The following 135 source packages in the archive
triggered the tag 462 times (in any Lintian version).
We found 14 overrides. The tag performed
97% of the time.
- acm
- allelecount
-
[usr/bin/alleleCounter.pl]
-
[usr/bin/alleleCounterToJson.pl]
- bamclipper
- bcachefs-tools
- bcbio
-
[usr/bin/bcbio_fastq_umi_prep.py]
-
[usr/bin/bcbio_nextgen.py]
-
[usr/bin/bcbio_prepare_samples.py]
-
[usr/bin/bcbio_setup_genome.py]
-
[usr/bin/cwltool2wdl.py]
- bcftools
-
[usr/bin/color-chrs.pl]
-
[usr/bin/gff2gff.py]
-
[usr/bin/guess-ploidy.py]
-
[usr/bin/plot-roh.py]
-
[usr/bin/run-roh.pl]
-
[usr/bin/vcfutils.pl]
- bind9-libs
- bindgraph
- biomaj3
-
[usr/bin/biomaj_migrate_database.py]
- biomaj3-cli
- biomaj3-daemon
-
[usr/bin/biomaj_daemon_consumer.py]
- biomaj3-download
-
[usr/bin/biomaj_download_consumer.py]
- biomaj3-process
-
[usr/bin/biomaj_process_consumer.py]
- biomaj3-user
-
[usr/bin/biomaj-users.py]
- bioperl-run
-
[usr/bin/bp_multi_hmmsearch.pl]
-
[usr/bin/bp_panalysis.pl]
-
[usr/bin/bp_papplmaker.pl]
-
[usr/bin/bp_run_neighbor.pl]
-
[usr/bin/bp_run_protdist.pl]
- bio-rainbow
-
[usr/bin/select_all_rbcontig.pl]
-
[usr/bin/select_best_rbcontig.pl]
-
[usr/bin/select_best_rbcontig_plus_read1.pl]
-
[usr/bin/select_sec_rbcontig.pl]
- cg3
- changeo
-
[usr/bin/AlignRecords.py]
-
[usr/bin/AssignGenes.py]
-
[usr/bin/BuildTrees.py]
-
[usr/bin/ConvertDb.py]
-
[usr/bin/CreateGermlines.py]
-
[usr/bin/DefineClones.py]
-
[usr/bin/MakeDb.py]
-
[usr/bin/ParseDb.py]
- chip-seq
-
[usr/bin/check_bed.pl]
-
[usr/bin/chr_replace_sga.pl]
-
[usr/bin/eland2sga.pl]
-
[usr/bin/fps2sga.pl]
-
[usr/bin/gff2sga.pl]
-
[usr/bin/partit2bed.pl]
-
[usr/bin/partit2gff.pl]
-
[usr/bin/sga2fps.pl]
-
[usr/bin/sga2gff.pl]
- cnvkit
- condor
- couriergraph
-
[usr/sbin/couriergraph.pl]
- denss
-
[usr/bin/best_enantiomers.sh]
-
[usr/bin/denss.align2xyz.py]
-
[usr/bin/denss.align_and_average.py]
-
[usr/bin/denss.align_by_principal_axes.py]
-
[usr/bin/denss.align.py]
-
[usr/bin/denss.all.py]
-
[usr/bin/denss.average.py]
-
[usr/bin/denss.calcfsc.py]
-
[usr/bin/denss.fit_data.py]
-
[usr/bin/denss.get_info.py]
-
[usr/bin/denss.mrcops.py]
-
[usr/bin/denss.pdb2mrc.py]
-
[usr/bin/denss.py]
-
[usr/bin/denss.refine.py]
-
[usr/bin/denss.rho2dat.py]
-
[usr/bin/fsc2res.py]
- direwolf
-
[usr/bin/dwespeak.sh]
-
[usr/bin/telem-balloon.pl]
-
[usr/bin/telem-bits.pl]
-
[usr/bin/telem-data91.pl]
-
[usr/bin/telem-data.pl]
-
[usr/bin/telem-eqns.pl]
-
[usr/bin/telem-parm.pl]
-
[usr/bin/telem-seq.sh]
-
[usr/bin/telem-unit.pl]
-
[usr/bin/telem-volts.py]
- discosnp
-
[usr/bin/run_discoSnp++_ML.sh]
-
[usr/bin/run_discoSnp++.sh]
- dnapi
-
[usr/bin/dnapi.py]
-
[usr/bin/qual_offset.py]
-
[usr/bin/qual_trim.py]
-
[usr/bin/to_fasta.py]
- docbook-dsssl
-
[usr/bin/collateindex.pl]
- dpdk
-
[usr/bin/dpdk-devbind.py]
-
[usr/bin/dpdk-hugepages.py]
-
[usr/bin/dpdk-pmdinfo.py]
-
[usr/bin/dpdk-telemetry.py]
- drop-seq
-
[usr/bin/create_Drop-seq_reference_metadata.sh]
-
[usr/bin/Drop-seq_alignment.sh]
-
[usr/bin/public_clp_template.sh]
- dvblast
- emboss
- gdal
-
[usr/bin/gdal2tiles.py]
-
[usr/bin/gdal2xyz.py]
-
[usr/bin/gdalattachpct.py]
-
[usr/bin/gdal_calc.py]
-
[usr/bin/gdalcompare.py]
-
[usr/bin/gdal_edit.py]
-
[usr/bin/gdal_fillnodata.py]
-
[usr/bin/gdal_merge.py]
-
[usr/bin/gdalmove.py]
-
[usr/bin/gdal_pansharpen.py]
-
[usr/bin/gdal_polygonize.py]
-
[usr/bin/gdal_proximity.py]
-
[usr/bin/gdal_retile.py]
-
[usr/bin/gdal_sieve.py]
-
[usr/bin/ogrmerge.py]
-
[usr/bin/pct2rgb.py]
-
[usr/bin/rgb2pct.py]
- gettext
- gfxreconstruct
-
[usr/bin/gfxrecon-capture.py]
-
[usr/bin/gfxrecon.py]
- gjots2
- gnome-common
-
[usr/bin/gnome-autogen.sh]
- gnuift
-
[usr/bin/gift-add-collection.pl]
-
[usr/bin/gift-diagnose-print-all-ADI.pl]
-
[usr/bin/gift-dtd-to-keywords.pl]
-
[usr/bin/gift-dtd-to-tex.pl]
-
[usr/bin/gift-mrml-client.pl]
-
[usr/bin/gift-old-to-new-url2fts.pl]
-
[usr/bin/gift-perl-example-server.pl]
-
[usr/bin/gift-remove-collection.pl]
-
[usr/bin/gift-start.pl]
-
[usr/bin/gift-url-to-fts.pl]
- graphviz
- healpy
-
[usr/bin/healpy_get_wmap_maps.sh]
- hisat2
-
[usr/bin/hisat2_extract_exons.py]
-
[usr/bin/hisat2_extract_snps_haplotypes_UCSC.py]
-
[usr/bin/hisat2_extract_snps_haplotypes_VCF.py]
-
[usr/bin/hisat2_extract_splice_sites.py]
- ifscheme
- imdbpy
-
[usr/bin/imdbpy2sql.py]
-
[usr/bin/s32imdbpy.py]
- kaptive
- kata-containers
-
[usr/bin/kata-collect-data.sh]
- kde-dev-scripts
-
[usr/bin/build-progress.sh]
-
[usr/bin/fix-include.sh]
-
[usr/bin/grantlee_strings_extractor.py]
-
[usr/bin/kdelnk2desktop.py]
-
[usr/bin/kdemangen.pl]
-
[usr/bin/kde-systemsettings-tree.py]
-
[usr/bin/png2mng.pl]
-
[usr/bin/zonetab2pot.py]
- kdevelop
-
[usr/bin/kdevplatform_shell_environment.sh]
- kig
- knockd
-
[usr/sbin/knock_helper_ipt.sh]
- kphotoalbum
-
[usr/bin/kpa-backup.sh]
-
[usr/bin/open-raw.pl]
- lagan
-
[usr/bin/anal_gloc.pl]
-
[usr/bin/lagan.pl]
-
[usr/bin/rechaos.pl]
-
[usr/bin/slagan-mfa.pl]
-
[usr/bin/slagan.pl]
-
[usr/bin/supermap.pl]
-
[usr/bin/xmfa2mfa.pl]
- lefse
-
[usr/bin/lefse2circlader.py]
-
[usr/bin/lefse_format_input.py]
-
[usr/bin/lefse_plot_cladogram.py]
-
[usr/bin/lefse_plot_features.py]
-
[usr/bin/lefse_plot_res.py]
-
[usr/bin/lefse_run.py]
-
[usr/bin/qiime2lefse.py]
- libbio-db-ace-perl
-
[usr/bin/bp_process_wormbase.pl]
- libbio-samtools-perl
-
[usr/bin/bamToGBrowse.pl]
-
[usr/bin/chrom_sizes.pl]
-
[usr/bin/genomeCoverageBed.pl]
- libbio-searchio-hmmer-perl
-
[usr/bin/bp_hmmer_to_table.pl]
-
[usr/bin/bp_parse_hmmsearch.pl]
- libbio-tools-run-remoteblast-perl
-
[usr/bin/bp_remote_blast.pl]
- libcatalyst-perl
- libdevel-repl-perl
- libhtml-formfu-perl
-
[usr/bin/html_formfu_deploy.pl]
-
[usr/bin/html_formfu_dumpconf.pl]
- liblocale-maketext-lexicon-perl
- libmason-perl
- libmath-prime-util-perl
- libstring-mkpasswd-perl
- magics++
- makedumpfile
-
[usr/bin/makedumpfile-R.pl]
- maq
-
[usr/bin/farm-run.pl]
-
[usr/bin/maq_eval.pl]
-
[usr/bin/maq.pl]
-
[usr/bin/maq_plot.pl]
- matrix-synapse
-
[usr/bin/generate_signing_key.py]
-
[usr/bin/move_remote_media_to_new_store.py]
-
[usr/bin/sync_room_to_group.pl]
- mesa
-
[usr/bin/mesa-overlay-control.py]
- metabat
-
[usr/bin/aggregateBinDepths.pl]
-
[usr/bin/aggregateContigOverlapsByBin.pl]
-
[usr/bin/merge_depths.pl]
-
[usr/bin/runMetaBat.sh]
- metaphlan2
-
[usr/bin/add_metadata_tree.py]
-
[usr/bin/extract_markers.py]
-
[usr/bin/merge_metaphlan_tables.py]
-
[usr/bin/plot_tree_graphlan.py]
-
[usr/bin/read_fastx.py]
-
[usr/bin/sample2markers.py]
-
[usr/bin/strain_transmission.py]
- mimedefang
-
[usr/bin/graphdefang.pl]
-
[usr/bin/mimedefang.pl]
-
[usr/bin/watch-multiple-mimedefangs.tcl]
- minimap2
- mountpy
- mtools
- myspell
- nanopb
-
[usr/bin/nanopb_generator.py]
- netatalk
- netdata
-
[usr/sbin/netdata-claim.sh]
- neutron
-
[usr/bin/ovn_migration.sh]
- openmpi
- opennebula-context
- packmol
- pal2nal
- paraclu
- parallel
-
[usr/bin/env_parallel.csh]
-
[usr/bin/env_parallel.sh]
- pfstools
-
[usr/bin/pfs_split_exposures.py]
- pftools
-
[usr/bin/compare_2_profiles.pl]
-
[usr/bin/fasta_to_fastq.pl]
-
[usr/bin/make_iupac_cmp.pl]
-
[usr/bin/ps_scan.pl]
-
[usr/bin/scramble_fasta.pl]
-
[usr/bin/sort_fasta.pl]
-
[usr/bin/split_profile_file.pl]
- php-sabredav
-
[usr/bin/naturalselection.py]
- pizzly
-
[usr/bin/flatten_json.py]
-
[usr/bin/get_fragment_length.py]
- plaso
-
[usr/bin/image_export.py]
-
[usr/bin/log2timeline.py]
-
[usr/bin/pinfo.py]
-
[usr/bin/psort.py]
-
[usr/bin/psteal.py]
- presto
-
[usr/bin/AlignSets.py]
-
[usr/bin/AssemblePairs.py]
-
[usr/bin/BuildConsensus.py]
-
[usr/bin/ClusterSets.py]
-
[usr/bin/CollapseSeq.py]
-
[usr/bin/ConvertHeaders.py]
-
[usr/bin/EstimateError.py]
-
[usr/bin/FilterSeq.py]
-
[usr/bin/MaskPrimers.py]
-
[usr/bin/PairSeq.py]
-
[usr/bin/ParseHeaders.py]
-
[usr/bin/ParseLog.py]
-
[usr/bin/SplitSeq.py]
-
[usr/bin/UnifyHeaders.py]
- prinseq-lite
-
[usr/bin/prinseq-graphs-noPCA.pl]
-
[usr/bin/prinseq-graphs.pl]
-
[usr/bin/prinseq-lite.pl]
- proteinortho
-
[usr/bin/proteinortho2html.pl]
-
[usr/bin/proteinortho2tree.pl]
-
[usr/bin/proteinortho2xml.pl]
-
[usr/bin/proteinortho6.pl]
-
[usr/bin/proteinortho_compareProteinorthoGraphs.pl]
-
[usr/bin/proteinortho_do_mcl.pl]
-
[usr/bin/proteinortho_extract_from_graph.pl]
-
[usr/bin/proteinortho_ffadj_mcs.py]
-
[usr/bin/proteinortho_formatUsearch.pl]
-
[usr/bin/proteinortho_grab_proteins.pl]
-
[usr/bin/proteinortho_history.pl]
-
[usr/bin/proteinortho_singletons.pl]
-
[usr/bin/proteinortho_summary.pl]
- pyasn
-
[usr/bin/pyasn_util_asnames.py]
-
[usr/bin/pyasn_util_convert.py]
-
[usr/bin/pyasn_util_download.py]
- pychopper
-
[usr/bin/cdna_classifier.py]
- pyftdi
-
[usr/bin/ftconf.py]
-
[usr/bin/ftdi_urls.py]
-
[usr/bin/i2cscan.py]
-
[usr/bin/pyterm.py]
- python-bx
-
[usr/bin/aggregate_scores_in_intervals.py]
-
[usr/bin/align_print_template.py]
-
[usr/bin/axt_extract_ranges.py]
-
[usr/bin/axt_to_fasta.py]
-
[usr/bin/axt_to_lav.py]
-
[usr/bin/axt_to_maf.py]
-
[usr/bin/bed_bigwig_profile.py]
-
[usr/bin/bed_build_windows.py]
-
[usr/bin/bed_complement.py]
-
[usr/bin/bed_count_by_interval.py]
-
[usr/bin/bed_count_overlapping.py]
-
[usr/bin/bed_coverage_by_interval.py]
-
[usr/bin/bed_coverage.py]
-
[usr/bin/bed_diff_basewise_summary.py]
-
[usr/bin/bed_extend_to.py]
-
[usr/bin/bed_intersect_basewise.py]
-
[usr/bin/bed_intersect.py]
-
[usr/bin/bed_merge_overlapping.py]
-
[usr/bin/bed_rand_intersect.py]
-
[usr/bin/bed_subtract_basewise.py]
-
[usr/bin/bnMapper.py]
-
[usr/bin/div_snp_table_chr.py]
-
[usr/bin/find_in_sorted_file.py]
-
[usr/bin/gene_fourfold_sites.py]
-
[usr/bin/get_scores_in_intervals.py]
-
[usr/bin/interval_count_intersections.py]
-
[usr/bin/interval_join.py]
-
[usr/bin/int_seqs_to_char_strings.py]
-
[usr/bin/lav_to_axt.py]
-
[usr/bin/lav_to_maf.py]
-
[usr/bin/line_select.py]
-
[usr/bin/lzop_build_offset_table.py]
-
[usr/bin/maf_build_index.py]
-
[usr/bin/maf_chop.py]
-
[usr/bin/maf_chunk.py]
-
[usr/bin/maf_col_counts_all.py]
-
[usr/bin/maf_col_counts.py]
-
[usr/bin/maf_count.py]
-
[usr/bin/maf_covered_ranges.py]
-
[usr/bin/maf_covered_regions.py]
-
[usr/bin/maf_div_sites.py]
-
[usr/bin/maf_drop_overlapping.py]
-
[usr/bin/maf_extract_chrom_ranges.py]
-
[usr/bin/maf_extract_ranges_indexed.py]
-
[usr/bin/maf_extract_ranges.py]
-
[usr/bin/maf_filter_max_wc.py]
-
[usr/bin/maf_filter.py]
-
[usr/bin/maf_gap_frequency.py]
-
[usr/bin/maf_gc_content.py]
-
[usr/bin/maf_interval_alignibility.py]
-
[usr/bin/maf_limit_to_species.py]
-
[usr/bin/maf_mapping_word_frequency.py]
-
[usr/bin/maf_mask_cpg.py]
-
[usr/bin/maf_mean_length_ungapped_piece.py]
-
[usr/bin/maf_percent_columns_matching.py]
-
[usr/bin/maf_percent_identity.py]
-
[usr/bin/maf_print_chroms.py]
-
[usr/bin/maf_print_scores.py]
-
[usr/bin/maf_randomize.py]
-
[usr/bin/maf_region_coverage_by_src.py]
-
[usr/bin/maf_select.py]
-
[usr/bin/maf_shuffle_columns.py]
-
[usr/bin/maf_species_in_all_files.py]
-
[usr/bin/maf_split_by_src.py]
-
[usr/bin/maf_thread_for_species.py]
-
[usr/bin/maf_tile_2bit.py]
-
[usr/bin/maf_tile_2.py]
-
[usr/bin/maf_tile.py]
-
[usr/bin/maf_to_axt.py]
-
[usr/bin/maf_to_concat_fasta.py]
-
[usr/bin/maf_to_fasta.py]
-
[usr/bin/maf_to_int_seqs.py]
-
[usr/bin/maf_translate_chars.py]
-
[usr/bin/maf_truncate.py]
-
[usr/bin/maf_word_frequency.py]
-
[usr/bin/mask_quality.py]
-
[usr/bin/mMK_bitset.py]
-
[usr/bin/nib_chrom_intervals_to_fasta.py]
-
[usr/bin/nib_intervals_to_fasta.py]
-
[usr/bin/nib_length.py]
-
[usr/bin/one_field_per_line.py]
-
[usr/bin/out_to_chain.py]
-
[usr/bin/prefix_lines.py]
-
[usr/bin/pretty_table.py]
-
[usr/bin/qv_to_bqv.py]
-
[usr/bin/random_lines.py]
-
[usr/bin/table_add_column.py]
-
[usr/bin/table_filter.py]
-
[usr/bin/tfloc_summary.py]
-
[usr/bin/ucsc_gene_table_to_intervals.py]
-
[usr/bin/wiggle_to_array_tree.py]
-
[usr/bin/wiggle_to_binned_array.py]
-
[usr/bin/wiggle_to_chr_binned_array.py]
-
[usr/bin/wiggle_to_simple.py]
- python-enigma
- python-evtx
-
[usr/bin/evtx_dump_chunk_slack.py]
-
[usr/bin/evtx_dump.py]
-
[usr/bin/evtx_eid_record_numbers.py]
-
[usr/bin/evtx_extract_record.py]
-
[usr/bin/evtx_filter_records.py]
-
[usr/bin/evtx_info.py]
-
[usr/bin/evtx_record_structure.py]
-
[usr/bin/evtx_structure.py]
-
[usr/bin/evtx_templates.py]
- python-ipmi
- python-jsonpath-rw
- python-plac
- python-pyani
-
[usr/bin/average_nucleotide_identity.py]
-
[usr/bin/delta_filter_wrapper.py]
-
[usr/bin/genbank_get_genomes_by_taxon.py]
- pyxnat
-
[usr/bin/sessionmirror.py]
- racon
-
[usr/bin/racon_wrapper.py]
- rapmap
- redfishtool
- ruby-knapsack
-
[usr/bin/print_header.sh]
- ruby-license-finder
-
[usr/bin/license_finder_pip.py]
- ruby-redis-actionpack
-
[usr/bin/bundler-version-options.rb]
- ruby-stackprof
-
[usr/bin/stackprof-flamegraph.pl]
-
[usr/bin/stackprof-gprof2dot.py]
- runawk
- sagemath
-
[usr/bin/sage-num-threads.py]
-
[usr/bin/sage-rebaseall.sh]
-
[usr/bin/sage-rebase.sh]
-
[usr/bin/sage-startuptime.py]
-
[usr/bin/sage-version.sh]
- samtools
-
[usr/bin/blast2sam.pl]
-
[usr/bin/bowtie2sam.pl]
-
[usr/bin/export2sam.pl]
-
[usr/bin/fasta-sanitize.pl]
-
[usr/bin/interpolate_sam.pl]
-
[usr/bin/novo2sam.pl]
-
[usr/bin/psl2sam.pl]
-
[usr/bin/sam2vcf.pl]
-
[usr/bin/samtools.pl]
-
[usr/bin/seq_cache_populate.pl]
-
[usr/bin/soap2sam.pl]
-
[usr/bin/wgsim_eval.pl]
-
[usr/bin/zoom2sam.pl]
- sepp
-
[usr/bin/run_sepp.py]
-
[usr/bin/run-sepp.sh]
- sg3-utils
-
[usr/bin/rescan-scsi-bus.sh]
- sibelia
- snap
-
[usr/bin/hmm-assembler.pl]
-
[usr/bin/patch-hmm.pl]
-
[usr/bin/zff2gff3.pl]
- snort
-
[usr/sbin/appid_detector_builder.sh]
- spirv-tools
-
[usr/bin/spirv-lesspipe.sh]
- ssft
- starpu
-
[usr/bin/starpu_mpi_comm_matrix.py]
-
[usr/bin/starpu_temanejo2.sh]
-
[usr/bin/starpu_trace_state_stats.py]
- starpu-contrib
-
[usr/bin/starpu_mpi_comm_matrix.py]
-
[usr/bin/starpu_temanejo2.sh]
-
[usr/bin/starpu_trace_state_stats.py]
- syslinux
- tar
- tcd-utils
-
[usr/bin/rewrite_tide_db.sh]
- tiddit
- tipp
-
[usr/bin/run_abundance.py]
-
[usr/bin/run_tipp.py]
-
[usr/bin/run_tipp_tool.py]
- tophat-recondition
-
[usr/bin/tophat-recondition.py]
- trace2dbest
-
[usr/bin/rename_file.pl]
-
[usr/bin/trace2dbest.pl]
- tvc
-
[usr/bin/variant_caller_pipeline.py]
- unhide.rb
- wine-development
-
[usr/bin/function_grep.pl]
- xabacus
-
[usr/games/play.sh]
-
[usr/games/play.sh]
- xinetd
- zoneminder
-
[usr/bin/zmaudit.pl]
-
[usr/bin/zmcamtool.pl]
-
[usr/bin/zmcontrol.pl]
-
[usr/bin/zmdc.pl]
-
[usr/bin/zmfilter.pl]
-
[usr/bin/zmonvif-probe.pl]
-
[usr/bin/zmonvif-trigger.pl]
-
[usr/bin/zmpkg.pl]
-
[usr/bin/zmrecover.pl]
-
[usr/bin/zmstats.pl]
-
[usr/bin/zmsystemctl.pl]
-
[usr/bin/zmtelemetry.pl]
-
[usr/bin/zmtrack.pl]
-
[usr/bin/zmtrigger.pl]
-
[usr/bin/zmupdate.pl]
-
[usr/bin/zmvideo.pl]
-
[usr/bin/zmwatch.pl]
-
[usr/bin/zmx10.pl]