Tags

libvcflib 1.0.1+dfsg-3

• libvcflib-dev_1.0.1+dfsg-3_amd64.deb
• O copyright-refers-to-versionless-license-file usr/share/common-licenses/LGPL
• libvcflib-tools_1.0.1+dfsg-3_amd64.deb
• W no-manual-page usr/bin/vcf2tsv
• W no-manual-page usr/bin/vcffilter
• W no-manual-page usr/bin/vcfkeepinfo
• W no-manual-page usr/bin/vcfstreamsort
• W no-manual-page usr/bin/vcfuniq
• P executable-in-usr-lib usr/lib/vcflib/bin/abba-baba
• P executable-in-usr-lib usr/lib/vcflib/bin/bFst
• P executable-in-usr-lib usr/lib/vcflib/bin/bed2region
• P executable-in-usr-lib usr/lib/vcflib/bin/bgziptabix
• P executable-in-usr-lib usr/lib/vcflib/bin/dumpContigsFromHeader
• P executable-in-usr-lib usr/lib/vcflib/bin/genotypeSummary
• P executable-in-usr-lib usr/lib/vcflib/bin/hapLrt
• P executable-in-usr-lib usr/lib/vcflib/bin/iHS
• P executable-in-usr-lib usr/lib/vcflib/bin/meltEHH
• P executable-in-usr-lib usr/lib/vcflib/bin/normalize-iHS
• P executable-in-usr-lib usr/lib/vcflib/bin/pFst
• P executable-in-usr-lib usr/lib/vcflib/bin/pVst
• P executable-in-usr-lib usr/lib/vcflib/bin/permuteGPAT++
• P executable-in-usr-lib usr/lib/vcflib/bin/permuteSmooth
• P executable-in-usr-lib usr/lib/vcflib/bin/plotHaps
• P executable-in-usr-lib usr/lib/vcflib/bin/plot_roc.r
• P executable-in-usr-lib usr/lib/vcflib/bin/popStats
• P executable-in-usr-lib usr/lib/vcflib/bin/segmentFst
• P executable-in-usr-lib usr/lib/vcflib/bin/segmentIhs
• P executable-in-usr-lib usr/lib/vcflib/bin/sequenceDiversity
• P executable-in-usr-lib usr/lib/vcflib/bin/smoother
• P executable-in-usr-lib usr/lib/vcflib/bin/vcf2bed.py
• P executable-in-usr-lib usr/lib/vcflib/bin/vcf2dag
• P executable-in-usr-lib usr/lib/vcflib/bin/vcf2fasta
• P executable-in-usr-lib usr/lib/vcflib/bin/vcf2sqlite.py
• P executable-in-usr-lib usr/lib/vcflib/bin/vcf2tsv
• P executable-in-usr-lib usr/lib/vcflib/bin/vcf_strip_extra_headers
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfaddinfo
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfafpath
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfallelicprimitives
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfaltcount
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfannotate
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfannotategenotypes
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfbiallelic
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfbreakmulti
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfcat
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfcheck
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfclassify
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfcleancomplex
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfclearid
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfclearinfo
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfcombine
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfcommonsamples
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfcomplex
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfcountalleles
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfcreatemulti
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfdistance
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfecho
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfentropy
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfevenregions
• P executable-in-usr-lib usr/lib/vcflib/bin/vcffilter
• P executable-in-usr-lib usr/lib/vcflib/bin/vcffirstheader
• P executable-in-usr-lib usr/lib/vcflib/bin/vcffixup
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfflatten
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfgeno2alleles
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfgeno2haplo
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfgenosamplenames
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfgenosummarize
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfgenotypecompare
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfgenotypes
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfglbound
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfglxgt
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfgtcompare.sh
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfhetcount
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfhethomratio
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfindelproximity
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfindels
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfindex
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfinfo2qual
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfinfosummarize
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfintersect
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfjoincalls
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfkeepgeno
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfkeepinfo
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfkeepsamples
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfld
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfleftalign
• P executable-in-usr-lib usr/lib/vcflib/bin/vcflength
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfmultiallelic
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfmultiway
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfmultiwayscripts
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfnobiallelicsnps
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfnoindels
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfnormalizesvs
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfnosnps
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfnull2ref
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfnulldotslashdot
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfnumalt
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfoverlay
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfparsealts
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfplotaltdiscrepancy.r
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfplotaltdiscrepancy.sh
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfplotsitediscrepancy.r
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfplottstv.sh
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfprimers
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfprintaltdiscrepancy.r
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfprintaltdiscrepancy.sh
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfqual2info
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfqualfilter
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfrandom
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfrandomsample
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfregionreduce
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfregionreduce_and_cut
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfregionreduce_pipe
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfregionreduce_uncompressed
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfremap
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfremoveaberrantgenotypes
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfremovenonATGC
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfremovesamples
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfroc
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfsample2info
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfsamplediff
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfsamplenames
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfsitesummarize
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfsnps
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfsort
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfstats
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfstreamsort
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfuniq
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfuniqalleles
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfunphase
• P executable-in-usr-lib usr/lib/vcflib/bin/vcfvarstats
• P executable-in-usr-lib usr/lib/vcflib/bin/wcFst
• O copyright-refers-to-versionless-license-file usr/share/common-licenses/LGPL
• libvcflib1_1.0.1+dfsg-3_amd64.deb
• I exit-in-shared-library usr/lib/x86_64-linux-gnu/libvcflib.so.1
• I no-symbols-control-file usr/lib/x86_64-linux-gnu/libvcflib.so.1
• O copyright-refers-to-versionless-license-file usr/share/common-licenses/LGPL
• libvcflib_1.0.1+dfsg-3.dsc
• W patch-file-present-but-not-mentioned-in-series intervaltree.patch
• I out-of-date-standards-version 4.4.1 (released 2019-09-29) (current is 4.5.0)
• I patch-not-forwarded-upstream debian/patches/crossbuild
• I patch-not-forwarded-upstream debian/patches/disorder_include
• I patch-not-forwarded-upstream debian/patches/dont_link_pthread
• I patch-not-forwarded-upstream debian/patches/fix_ssw_cpp_header_name.patch
• I patch-not-forwarded-upstream debian/patches/hardening-flags
• I patch-not-forwarded-upstream debian/patches/intervaltree.patch
• I patch-not-forwarded-upstream debian/patches/no_fsom
• I patch-not-forwarded-upstream debian/patches/no_libVCFH
• I patch-not-forwarded-upstream debian/patches/override_version
• I patch-not-forwarded-upstream debian/patches/pkg-config.patch
• I patch-not-forwarded-upstream debian/patches/shared_lib.patch
• I patch-not-forwarded-upstream debian/patches/use_debian_packaged_fastahack.patch
• I patch-not-forwarded-upstream debian/patches/use_debian_packaged_libssw.patch
• I patch-not-forwarded-upstream debian/patches/use_debian_packaged_smithwaterman.patch
• I patch-not-forwarded-upstream debian/patches/use_debian_packaged_tabixpp.patch
• I upstream-metadata-missing-bug-tracking
• I upstream-metadata-missing-repository
• P debian-watch-does-not-check-gpg-signature
• P maintainer-manual-page debian/vcflib.1
• P package-does-not-install-examples examples/
• P package-uses-old-debhelper-compat-version 12
• P silent-on-rules-requiring-root