Michael R. Crusoe
At the time of the last Lintian run, the following possible problems were found in packages maintained by Michael R. Crusoe <michael.crusoe@gmail.com>, listed by source package. See also the full report, including info, experimental and overridden tags. Also see their QA overview.
ctdconverter (2.1-1) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.24.0)
ctdconverter
-
W manpage-has-errors-from-man
- usr/share/man/man1/CTDConverter.1.gz 75: warning [p 2, 4.2i]: can't break line
ctdopts (1.2-3) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.24.0)
-
W ancient-python-version-field
- x-python-version 2.6
- x-python3-version 3.2
cwltool (1.0.20190915164430+dfsg-1) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.26.0)
cwltool
-
W executable-not-elf-or-script
- usr/lib/python3/dist-packages/cwltool/tests/arg-empty-prefix-separate-false.cwl
htslib (1.9-11) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.25.0)
libhts-dev
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W manpage-has-errors-from-man
- usr/share/man/man5/faidx.5.gz file '<standard input>', around line 49:
- usr/share/man/man5/vcf.5.gz file '<standard input>', around line 39:
khmer (2.1.2+dfsg-6) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.28.0)
-
W inconsistent-appstream-metadata-license
- debian/khmer.metainfo.xml (mit != bsd-3-clause)
libdeflate (1.3-3) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.26.0)
-
W dependency-is-not-multi-archified
- libdeflate-dev depends on libdeflate0 (multi-arch: no)
- libdeflate-dev depends on libdeflate0 (multi-arch: no)
- libdeflate-dev depends on libdeflate0 (multi-arch: no)
- libdeflate-dev depends on libdeflate0 (multi-arch: no)
libdeflate0
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W binary-without-manpage
- usr/bin/libdeflate-gunzip [amd64, i386]
- usr/bin/libdeflate-gzip [amd64, i386]
mira (4.9.6-4) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.26.0)
-
W debian-rules-should-not-use-custom-compression-settings
- dh_builddeb -- -Z xz (line 53)
python-bx (0.8.2-1) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.24.0)
-
W missing-license-paragraph-in-dep5-copyright
- gpl-2 (paragraph at line 23)
python-gffutils (0.9-2) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.25.0)
python3-gffutils
-
W manpage-has-errors-from-man
- usr/share/man/man1/gffutils-cli.1.gz 8: warning [p 1, 1.7i, div 'an-div', 0.0i]: cannot adjust line
python-screed (1.0-3) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.29.0)
python3-screed
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W binary-without-manpage
- usr/bin/screed
r-cran-blockmodeling (0.3.4-1) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.28.0)
r-cran-blockmodeling
-
W spelling-error-in-description
- algorithem algorithm [amd64, i386]
rsem (1.3.2+dfsg-2) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.26.0)
rsem
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W binary-without-manpage
- usr/bin/extract-transcript-to-gene-map-from-trinity
- usr/bin/rsem-bam2readdepth
- usr/bin/rsem-build-read-index
- usr/bin/rsem-calculate-credibility-intervals
- usr/bin/rsem-extract-reference-transcripts
- usr/bin/rsem-gen-transcript-plots
- usr/bin/rsem-generate-data-matrix
- usr/bin/rsem-get-unique
- usr/bin/rsem-parse-alignments
- usr/bin/rsem-plot-model
- usr/bin/rsem-preref
- usr/bin/rsem-refseq-extract-primary-assembly
- usr/bin/rsem-run-em
- usr/bin/rsem-run-gibbs
- usr/bin/rsem-sam-validator
- usr/bin/rsem-scan-for-paired-end-reads
- usr/bin/rsem-synthesis-reference-transcripts
- usr/bin/rsem-tbam2gbam
- usr/bin/rsem_perl_utils.pm
ruby-colorize (0.8.1-1) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.25.0)
-
W ancient-standards-version
- 3.9.8 (released 2016-04-06) (current is 4.4.1)
-
W vcs-obsolete-in-debian-infrastructure
- vcs-browser https://anonscm.debian.org/cgit/pkg-ruby-extras/ruby-colorize.git
- vcs-git https://anonscm.debian.org/git/pkg-ruby-extras/ruby-colorize.git
seqan2 (2.4.0+dfsg-11) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.24.0)
libseqan2-dev
-
W pkg-config-references-unknown-shared-library
- usr/share/pkgconfig/seqan-2.pc -lbz2 (line 9)
sga (0.10.15-4) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.24.0)
sga
-
W privacy-breach-generic
- usr/share/doc/sga/index.html [<img border="0" width="90" src="http://github.com/images/modules/download/tar.png">] (http://github.com/images/modules/download/tar.png)
- usr/share/doc/sga/index.html [<img border="0" width="90" src="http://github.com/images/modules/download/zip.png">] (http://github.com/images/modules/download/zip.png)
staden-io-lib (1.14.11-6) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.24.0)
libstaden-read-dev
-
W binary-without-manpage
- usr/bin/io_lib-config [amd64, i386]
staden-io-lib-examples
-
W zero-byte-file-in-doc-directory
- usr/share/doc/staden-io-lib/test/data/xx#blank.sam
staden-io-lib-utils
-
W binary-without-manpage
- usr/bin/convert_trace [amd64, i386]
- usr/bin/cram_dump [amd64, i386]
- usr/bin/cram_filter [amd64, i386]
- usr/bin/cram_index [amd64, i386]
- usr/bin/cram_size [amd64, i386]
- usr/bin/extract_fastq [amd64, i386]
- usr/bin/extract_qual [amd64, i386]
- usr/bin/extract_seq [amd64, i386]
- usr/bin/get_comment [amd64, i386]
- usr/bin/hash_exp [amd64, i386]
- usr/bin/hash_extract [amd64, i386]
- usr/bin/hash_list [amd64, i386]
- usr/bin/hash_sff [amd64, i386]
- usr/bin/hash_tar [amd64, i386]
- usr/bin/index_tar [amd64, i386]
- usr/bin/makeSCF [amd64, i386]
- usr/bin/scf_dump [amd64, i386]
- usr/bin/scf_info [amd64, i386]
- usr/bin/scf_update [amd64, i386]
- usr/bin/scram_flagstat [amd64, i386]
- usr/bin/scram_merge [amd64, i386]
- usr/bin/scram_pileup [amd64, i386]
- usr/bin/scram_test [amd64, i386]
- usr/bin/srf_extract_hash [amd64, i386]
- usr/bin/srf_extract_linear [amd64, i386]
- usr/bin/trace_dump [amd64, i386]
- usr/bin/ztr_dump [amd64, i386]
trinityrnaseq (2.6.6+dfsg-6) [Uploader] §
Info Package Tracker Bugs Source Full report (outdated, last processed by Lintian/2.26.0)
trinityrnaseq
-
W bad-jar-name
- usr/share/java/Butterfly-2.6.6.jar
-
E python-script-but-no-python-dep
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/extract_supertranscript_from_reference.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Compact_graph_partial.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Compact_graph_whole.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/DP_matrix.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/GraphCycleException.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Node_alignment.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Node_path.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Splice_model_refiner.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/TGraph.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/TNode.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Topological_sort.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py #!python3
- usr/lib/trinityrnaseq/Analysis/SuperTranscripts/pylib/Trinity_util.py #!python3
- usr/lib/trinityrnaseq/util/misc/TPM_weighted_gene_length.py #!python3
- usr/lib/trinityrnaseq/util/support_scripts/trinity_installer.py #!python3
trinityrnaseq-examples
-
E depends-on-essential-package-without-using-version
- depends: coreutils