Lintian Reports

Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the report showing only errors and warnings. Also see their QA overview.

abacas (1.3.1-5) §

abacas

acedb (4.9.39+dfsg.02-4) §

acedb-other

adun.app (0.81-13) §

adun-core

adun.app

aegean (0.16.0+dfsg-2) §

aegean

aeskulap (0.2.2-beta2+git20190406.ef77f01-1) §

aeskulap

aevol (5.0+ds-1) §

aevol

alien-hunter (1.7-7) §

alien-hunter

amap-align (2.2+git20080214.600fc29+dfsg-1) §

amap-align

amide (1.0.5-12) §

amide (1.0.5-12+b1; main)

ampliconnoise (1.29-8) §

ampliconnoise

andi (0.12-4) §

andi

anfo (0.98-7) §

anfo

libanfo0

aragorn (1.2.38-2) §

aragorn

arb (6.0.6-4; non-free) §

arb

arb-common

arb-doc

libarb

libarb-dev

arden (1.0-5) §

arden

ariba (2.14.4+ds-1) §

art-nextgen-simulation-tools (20160605+dfsg-3) §

art-nextgen-simulation-tools

art-nextgen-simulation-tools-profiles

artemis (17.0.1+dfsg-2) §

artemis

artfastqgenerator (0.0.20150519-3) §

assemblytics (1.0+ds-2) §

augustus (3.3.3+dfsg-2) §

augustus

augustus-data

autodock-vina (1.1.2-5) §

autodock-vina (1.1.2-5+b1; main)

axe-demultiplexer (0.3.3+dfsg-1) §

axe-demultiplexer

baitfisher (1.2.7+git20180107.e92dbf2+dfsg-1) §

baitfisher

bali-phy (3.4.1+dfsg-2) §

bali-phy

ball (1.5.0+git20180813.37fc53c-3) §

ballview

libball1.5

libball1.5-dev

libball1.5-doc

libballview1.5

libballview1.5-dev

python-ball

bambamc (0.0.50-3) §

libbambamc0

bandage (0.8.1-1) §

barrnap (0.9+dfsg-1) §

barrnap

bart (0.5.00-1) §

bart

bart-view (0.1.00-2) §

bart-view

beast2-mcmc (2.6.0+dfsg-1) §

beast2-mcmc-doc

beast2-mcmc-examples

bedtools (2.27.1+dfsg-4) §

bedtools-test

bio-eagle (2.4.1-1) §

bio-rainbow (2.0.4+dfsg-1) §

bio-rainbow

biobambam2 (2.0.95-1) §

biobambam2

biococoa (2.2.2-4) §

libbiococoa-dev (2.2.2-4+b1; main)

libbiococoa2 (2.2.2-4+b1; main)

biojava-live (1:1.7.1-8) §

libbiojava-java

libbiojava-java-demos

libbiojava-java-doc

biojava4-live (4.2.12+dfsg-2) §

libbiojava4-java

biomaj3-zipkin (0.2.2-1) §

python3-biomaj3-zipkin

biosquid (1.9g+cvs20050121-11) §

biosquid

libsquid-dev

libsquid1

biosyntax (1.0.0b-1) §

biosyntax-example

bitseq (0.7.5+dfsg-5) §

bitseq

blimps (3.9+ds-1; non-free) §

blimps-examples

blimps-utils

libblimps3

boxshade (3.3.1-13) §

boxshade

bppphyview (0.6.1-1) §

bppsuite (2.4.1-1) §

bppsuite

bppsuite-examples

brig (0.95+dfsg-2) §

brig

cain (1.10+dfsg-3) §

cain

cain-examples

cassiopee (1.0.9-2) §

libcassie-dev

libcassie-doc

libcassie1v5

cct (20170919+dfsg-1) §

cct

cct-examples

cd-hit (4.8.1-2) §

cd-hit

cdbfasta (0.99-20100722-6) §

cdbfasta

centrifuge (1.0.3-3) §

centrifuge

cfflib (2.0.5-3) §

cgview (0.0.20100111-4) §

cgview

changeo (0.4.6-1) §

changeo

charls (2.0.0+dfsg-1) §

libcharls2 (2.0.0+dfsg-1+b1; main)

chromimpute (1.0.3+dfsg-1) §

circlator (1.5.6-1) §

circos (0.69.9+dfsg-1) §

circos

fonts-circos-symbols

circos-tools (0.23-1) §

circos-tools

clearcut (1.0.9-4) §

clearcut

clonalframe (1.2-10) §

clonalframe

clonalframeml (1.11-3) §

clonalframeml

clonalorigin (1.0-3) §

clonalorigin

clustalw (2.1+lgpl-6) §

clustalw

clustalx (2.1+lgpl-8) §

cluster3 (1.57-1; non-free) §

codonw (1.4.4-4) §

codonw

coils (2002-7) §

ncoils

concavity (0.1+dfsg.1-4) §

concavity

consensuscore (1.1.1+dfsg-1) §

crac (2.5.2+dfsg-2) §

ctdconverter (2.1-1) §

ctdconverter

ctdopts (1.2-3) §

ctn (3.2.0~dfsg-6) §

ctn (3.2.0~dfsg-6+b1; main)

ctsim (6.0.2-3) §

ctsim

ctsim-doc

cwltool (1.0.20190915164430+dfsg-1) §

cwltool

cyvcf2 (0.11.5-1) §

daligner (1.0+git20180524.fd21879-1) §

daligner

dascrubber (1.1-1) §

dascrubber

dawg (1.2-2) §

dawg

dcm2niix (1.0.20181125-1) §

dcm2niix

dcmtk (3.6.4-2.1) §

dcmtk

dcmtk-doc

libdcmtk14

dialign (2.2.1-10) §

dialign

dialign-t (1.0.2-12) §

dialign-tx

dicom3tools (1.00~20190724083540-1) §

dicom3tools

dicompyler (0.4.2.0-2) §

dicompyler

dicomscope (3.6.0-20) §

dicomscope

dindel (1.01-wu1-3+dfsg-1) §

dindel (1.01-wu1-3+dfsg-1+b1; main)

disulfinder (1.2.11-8) §

disulfinder

dnaclust (3-7) §

dnaclust

dssp (3.0.0-3) §

dssp (3.0.0-3+b1; main)

e-mem (1.0.1-2) §

e-mem

ea-utils (1.1.2+dfsg-5) §

ea-utils

ecopcr (1.0.1+dfsg-1) §

ecopcr

edflib (1.16-1) §

libedf1

edtsurf (0.2009-6) §

edtsurf

eigensoft (7.2.1+dfsg-1) §

eigensoft

elastix (4.9.0-1) §

elastix-doc

embassy-domainatrix (0.1.660-3) §

embassy-domainatrix

embassy-domalign (0.1.660-3) §

embassy-domalign

embassy-domsearch (1:0.1.660-3) §

embassy-domsearch

embassy-phylip (3.69.660-3; non-free) §

embassy-phylip

emboss (6.6.0+dfsg-7) §

emboss (6.6.0+dfsg-7+b1; main)

emboss-doc

emboss-lib (6.6.0+dfsg-7+b1; main)

emboss-test

jemboss

emboss-explorer (2.2.0-10) §

emboss-explorer

emmax (0~beta.20100307-1) §

emmax

epcr (2.3.12-1-8) §

ncbi-epcr

epigrass (2.5.0+dfsg-1) §

epigrass

estscan (3.0.3-3) §

estscan

exonerate (2.4.0-4) §

exonerate

falcon (1.8.8-1) §

falcon

fastaq (3.17.0-2) §

fastdnaml (1.2.2-14) §

fastdnaml

fastlink

fastlink-doc

fastml (3.11-2) §

fastml

fastp (0.20.0+dfsg-1) §

fastp

fastqtl (2.184+dfsg-7) §

fastqtl-doc

fasttree (2.1.11-1) §

fasttree

ffindex (0.9.9.9-3) §

libffindex0

fis-gtm (6.3-007-1) §

fis-gtm-6.3-007 (6.3-007-1+b1; main)

fitgcp (0.0.20150429-3) §

fitgcp

flexbar (1:3.5.0-2) §

flexbar

freecontact (1.0.21-7) §

freecontact (1.0.21-7+b1; main)

libfreecontact-doc

libfreecontact0v5 (1.0.21-7+b1; main)

freemedforms-project (0.9.4-2) §

freediams (0.9.4-2+b2; main)

freediams-doc-en

freediams-doc-fr

freemedforms-common-resources

freemedforms-emr (0.9.4-2+b2; main)

freemedforms-emr-doc-en

freemedforms-emr-doc-fr

freemedforms-emr-resources

freemedforms-freedata

freemedforms-i18n

freemedforms-libs (0.9.4-2+b2; main)

freemedforms-project

freemedforms-theme

fsa (1.15.9+dfsg-4) §

fsa

fsm-lite (1.0-3) §

galileo (0.5.1-6) §

galileo

galileo-daemon

garli (2.1-3) §

garli

garli-examples

garli-mpi

gasic (0.0.r19-5) §

gasic

gdcm (2.8.8-9) §

gdcm-doc

libgdcm2.8 (2.8.8-9+b1; main)

libvtkgdcm2.8a (2.8.8-9+b1; main)

gdpc (2.2.5-9) §

gdpc

gemma (0.98.1+dfsg-1) §

gemma

gemma-doc

genometester (4.0+git20180508.a9c14a6+dfsg-1) §

genometester

gentle (1.9+cvs20100605+dfsg1-8) §

gentle

getdata (0.2-3) §

getdata

gff2aplot (2.0-11) §

gff2aplot

gff2ps (0.98l-2) §

gff2ps

ghmm (0.9~rc3-2) §

ghmm

libghmm1

giira (0.0.20140625-2) §

giira

glam2 (1064-8) §

glam2

golang-github-dataence-porter2 (0.0~git20150829.56e4718-2) §

suffixfsm

grabix (0.1.7-2) §

grabix

grinder (0.5.4-5) §

grinder

gwama (2.2.2+dfsg-2) §

harvest-tools (1.3-4) §

harvest-tools

hhsuite (3.2.0-2) §

hhsuite

hmmer2 (2.3.2+dfsg-6) §

libhmmer2-dev

htseq (0.11.2-2) §

htsjdk (2.18.2+dfsg-2) §

libhtsjdk-java-doc

hunspell-en-med (0.0.20140410-1) §

hunspell-en-med

igdiscover (0.11-3) §

igdiscover

igdiscover-doc

igor (1.3.0+dfsg-1) §

igor

igraph (0.7.1-4) §

libigraph0v5

igv (2.4.17+dfsg-1; non-free) §

indelible (1.03-4) §

indelible

insighttoolkit4 (4.12.2-dfsg1-4) §

insighttoolkit4-examples

libinsighttoolkit4.12 (4.12.2-dfsg1-4+b2; main)

insighttoolkit4 (4.12.2-dfsg1-4.1)

insighttoolkit4-examples

libinsighttoolkit4.12

invesalius (3.1.99992-3) §

invesalius

invesalius (3.1.99993-1)

invesalius

ipig (0.0.r5-3) §

ipig

ismrmrd (1.4.0-1) §

ismrmrd-tools

libismrmrd-doc

libismrmrd1.3

jaligner (1.0+dfsg-6) §

jam-lib (0.1.git20180106.740247a+dfsg-1) §

libjam-java-doc

jebl2 (0.1+git20180418.653eb83-1) §

libjebl2-java-doc

jellyfish1 (1.1.11-4) §

jellyfish1

jheatchart (0.6-1) §

libjheatchart-java-doc

jmodeltest (2.1.10+dfsg-7) §

jmodeltest

kalign (1:2.03+20110620-5) §

kalign

khmer (2.1.2+dfsg-6) §

khmer-common

kineticstools (0.6.1+git20180425.27a1878-2) §

kineticstools

king (2.23.161103+dfsg1-3) §

king

king-probe (2.16.160404+git20180613.a09b012-1) §

king-probe

kissplice (2.4.0-p1-5) §

kissplice

kmc (2.3+dfsg-7) §

kmc

kmer (0~20150903+r2013-6) §

atac

leaff

kmerresistance (2.2.0-1) §

kmerresistance

kraken (1.1.1-1) §

kraken

kraken2 (2.0.8~beta-1) §

kraken2

lagan (2.0-5) §

lagan

lamarc (2.1.10.1+dfsg-4) §

lamarc

lambda-align (1.0.3-5) §

lambda-align2 (2.0.0-6) §

lambda-align2

lefse (1.0.8-3) §

libace-perl (1.92-8) §

libace-perl (1.92-8+b2; main)

libbio-coordinate-perl (1.7.1-3) §

libbio-das-lite-perl (2.11-7) §

libbio-mage-perl (20030502.3-5) §

libbio-mage-perl

libbio-mage-utils-perl (20030502.0-4) §

libbio-mage-utils-perl

libbioparser-dev (2.0.1-1) §

libbpp-core (2.4.1-4) §

libbpp-core-dev

libbpp-core4

libbpp-phyl (2.4.1-3) §

libbpp-phyl-dev

libbpp-phyl12

libbpp-phyl-omics (2.4.1-1) §

libbpp-phyl-omics-dev

libbpp-phyl-omics3

libbpp-popgen (2.4.1-2) §

libbpp-popgen-dev

libbpp-popgen8

libbpp-qt (2.4.1-3) §

libbpp-raa (2.4.1-3) §

libbpp-raa-dev

libbpp-raa4

libbpp-seq (2.4.1-4) §

libbpp-seq-dev

libbpp-seq12

libbpp-seq-omics (2.4.1-4) §

libbpp-seq-omics-dev

libbpp-seq-omics3

libcolt-free-java (1.2.0+dfsg-7) §

libcolt-free-java-doc

libctapimkt (1.0.5~rc1-7) §

libctapimkt1

libdisorder (0.0.2+git20130809.8062ee1-1) §

libdisorder-tools

libdisorder0

libdivsufsort (2.0.1-4) §

libdivsufsort3

libedlib (1.2.4-2) §

libfreecontact-perl (0.08-7) §

libgenome (1.3.11+svn20110227.4616-2) §

libgenome0

libgenome-model-tools-music-perl (0.04-4) [Uploader] §

libgenome-model-tools-music-perl

libgenome-perl (0.06-5) [Uploader] §

libgenome-perl

libgff (1.0-2) §

libgkarrays (2.1.0+dfsg-2) §

libgkarrays-dev

libgkarrays1

libgo-perl (0.15-7) §

libgo-perl

libgtextutils (0.7-6) §

libgtextutils0v5

libgzstream (1.5+dfsg-4) §

libgzstream0

libhac-java (0.20110510-3) §

libhac-java-doc

libhat-trie (0.1.2-2) §

libhat-trie0

libhpptools (1.1.1-3) §

libics (1.6.2-2) §

libics0

libjbzip2-java (0.9.1-5) §

libjloda-java (0.0+git20180523.cbaf6d1-1) §

libjloda-java

libjung-free-java (2.0.1+dfsg-1) §

libjung-free-java-doc

libkmlframework-java (0.0.git20150825.a2e0518-1) §

libkmlframework-java

liblemon (1.3.1+dfsg-2) §

liblemon-dev

liblemon-doc

liblemon-utils

liblemon1.3.1

libmaus2 (2.0.611-1) §

libmaus2-2

libmems (1.6.0+4725-8) §

libmems-dev (1.6.0+4725-8+b1; main)

libmems1 (1.6.0+4725-8+b1; main)

libmialm (1.0.9-2) §

libmialm3

libminc (2.4.03-2) §

libminc2-5.2.0 (2.4.03-2+b1; main)

libmurmurhash (1.5-2) §

libmurmurhash2

libmuscle (3.7+4565-6) §

libmuscle1

liboptions-java (0.0.20120113-3) §

liboptions-java-doc

libpal-java (1.5.1+dfsg-5) §

libpal-java-doc

libpll (0.3.2-2) §

libpll0

libpsortb (1.0+dfsg-3) §

libmodhmm0

libsvmloc0

libqes (0.2.8-1) §

libqes0

librandom123 (1.09+dfsg-2) §

librandom123-doc

librdp-taxonomy-tree-java (1.2.0-3) §

librdp-taxonomy-tree-java

librg-blast-parser-perl (0.03-6) §

librg-blast-parser-perl (0.03-6+b2; main)

librg-exception-perl (1.0.3-4) §

librg-utils-perl (1.0.43-6) §

librg-utils-perl

librostlab-blast (1.0.1-10) §

librostlab-blast-doc

librostlab-blast0v5

libsbml (5.17.2+dfsg-3) §

libsbml5 (5.17.2+dfsg-3+b3; main)

libsbml5-cil (5.17.2+dfsg-3+b3; main)

libsbml5-doc