Lintian Reports

Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the report showing only errors and warnings. Also see their QA overview.

abacas (1.3.1-5) §

abacas

abyss (2.1.5-7) §

abyss (2.2.2-1)

abyss

acedb (4.9.39+dfsg.02-4) §

acedb-other

adapterremoval (2.2.3-1) §

adapterremoval (2.2.4-1)

adapterremoval (2.3.1-1)

adapterremoval

adun.app (0.81-13) §

adun-core

adun.app

aegean (0.16.0+dfsg-1) §

aegean (0.16.0+dfsg-2)

aegean

aeskulap (0.2.2-beta2+git20180219.8787e95-2) §

aeskulap (0.2.2-beta2+git20190406.ef77f01-1)

aeskulap

aevol (5.0-2) §

aevol (5.0+ds-1)

aevol

aghermann (1.1.2-2) §

aghermann

alien-hunter (1.7-7) §

alien-hunter

alter-sequence-alignment (1.3.4-2) §

altree (1.3.1-7) §

altree (1.3.1-7+b1; main)

altree-examples

amap-align (2.2+git20080214.600fc29+dfsg-1) §

amap-align

amide (1.0.5-12) §

amide (1.0.5-12+b1; main)

ampliconnoise (1.29-8) §

ampliconnoise

ampliconnoise-dbgsym

andi (0.12-4) §

andi

anfo (0.98-7) §

anfo

libanfo0

aragorn (1.2.38-2) §

aragorn

arb (6.0.6-4; non-free) §

arb

arb-common

arb-doc

libarb

libarb-dev

arden (1.0-5) §

arden

ariba (2.13.3+ds-1) §

ariba (2.14.3+ds-1)

art-nextgen-simulation-tools (20160605+dfsg-3) §

art-nextgen-simulation-tools

art-nextgen-simulation-tools-profiles

artemis (17.0.1+dfsg-2) §

artemis

artfastqgenerator (0.0.20150519-3) §

assemblytics (1.0+ds-2) §

atropos (1.1.21+dfsg-1) §

augustus (3.3.2+dfsg-2) §

augustus (3.3.2+dfsg-2+b1; main)

augustus-data

autodock-vina (1.1.2-5) §

autodock-vina (1.1.2-5+b1; main)

autodocksuite (4.2.6-6) §

autodock

autogrid

autodocktools (1.5.7-4; non-free) §

autodocktools

axe-demultiplexer (0.3.3+dfsg-1) §

axe-demultiplexer

baitfisher (1.2.7+git20180107.e92dbf2+dfsg-1) §

baitfisher

bali-phy (3.4.1+dfsg-2) §

bali-phy

bali-phy-dbgsym

ball (1.4.3~beta1-4) §

ball (1.5.0+git20180813.37fc53c-3)

ballview

libball1.5

libball1.5-dev

libball1.5-doc

libballview1.5

libballview1.5-dev

python-ball

bambamc (0.0.50-3) §

libbambamc0

bamtools (2.5.1+dfsg-3) §

bamtools

libbamtools-doc

libbamtools2.5.1

bandage (0.8.1-1) §

bandage

barrnap (0.9+dfsg-1) §

barrnap

bart (0.4.04-2) §

bart (0.5.00-1)

bart

bart-view (0.1.00-2) §

bart-view

bbmap (38.63+dfsg-1) §

bbmap

bbmap-jni

bcbio (1.1.5-1) §

bcbio

bcbio-doc

bcftools (1.9-1) §

bcftools

beads (1.1.18+dfsg-3) §

beads

beagle (5.1-190824+dfsg-1) §

beagle-doc

beast-mcmc (1.10.4+dfsg-1) §

beast-mcmc

beast-mcmc-examples

libnucleotidelikelihoodcore0

libnucleotidelikelihoodcore0-dbgsym

beast2-mcmc (2.6.0+dfsg-1) §

beast2-mcmc-doc

beast2-mcmc-examples

bedops (2.4.35+dfsg-1) §

bedops-dbgsym

bedops (2.4.36+dfsg-2)

bedops

bedops-doc

bedtools (2.27.1+dfsg-4) §

bedtools-test

bedtools (2.28.0+dfsg1-1)

bedtools

bedtools-test

berkeley-express (1.5.2+dfsg-1) §

berkeley-express (1.5.2+dfsg-1+b2; main)

bio-eagle (2.4.1-1) §

bio-rainbow (2.0.4+dfsg-1) §

bio-rainbow

bio-tradis (1.4.1+dfsg-1) §

bio-tradis

biobambam2 (2.0.95-1) §

biobambam2

biobambam2 (2.0.137+dfsg-1)

biobambam2

biococoa (2.2.2-4) §

libbiococoa-dev (2.2.2-4+b1; main)

libbiococoa2 (2.2.2-4+b1; main)

libbiococoa2-dbgsym (2.2.2-4+b1; main)

biojava-live (1:1.7.1-8) §

libbiojava-java

libbiojava-java-demos

libbiojava-java-doc

biojava4-live (4.2.12+dfsg-2) §

libbiojava4-java

biomaj3 (3.1.8-1) §

python3-biomaj3

biomaj3-cli (3.1.10-1) §

python3-biomaj3-cli

biomaj3-core (3.0.16-1) §

python3-biomaj3-core

biomaj3-daemon (3.0.19-1) §

python3-biomaj3-daemon

biomaj3-download (3.0.21-1) §

python3-biomaj3-download

biomaj3-process (3.0.13-1) §

python3-biomaj3-process

biomaj3-user (3.0.8-1) §

python3-biomaj3-user

biomaj3-zipkin (0.2.2-1) §

python3-biomaj3-zipkin

bioperl (1.7.5-1) §

libbio-perl-perl

bioperl-run (1.7.3-1) §

bioperl-run

libbio-perl-run-perl

biosquid (1.9g+cvs20050121-11) §

biosquid

libsquid-dev

libsquid1

biosyntax (1.0.0b-1) §

biosyntax-example

bitseq (0.7.5+dfsg-4) §

blasr (5.3.2+dfsg-1.1) §

blimps (3.9+ds-1; non-free) §

blimps-examples

blimps-utils

libblimps3

bolt-lmm (2.3.2+dfsg-3) §

bolt-lmm (2.3.2+dfsg-3+b1; main)

bowtie (1.2.2+dfsg-4) §

bowtie (1.2.3+dfsg-2)

bowtie

bowtie2 (2.3.4.3-1) §

bowtie2 (2.3.5.1-1)

bowtie2

boxshade (3.3.1-13) §

boxshade

bppphyview (0.6.1-1) §

bppphyview

bppsuite (2.4.1-1) §

bppsuite

bppsuite-examples

brig (0.95+dfsg-2) §

brig

bwa (0.7.17-3) §

bwa

cain (1.10+dfsg-3) §

cain

cain-examples

camitk (4.1.2-3) §

libcamitk-dev

libcamitk4

libcamitk4-data

libqtpropertybrowser-dev

libqtpropertybrowser4

camp (0.8.2-1) §

camp (0.8.2-2)

libcamp0.8

canu (1.8+dfsg-2) §

canu

cassiopee (1.0.9-2) §

libcassie-dev

libcassie-doc

libcassie1v5

cct (20170919+dfsg-1) §

cct

cct-examples

cd-hit (4.6.8-2) §

cd-hit (4.8.1-2)

cd-hit

cdbfasta (0.99-20100722-5) §

cdbfasta (0.99-20100722-6)

cdbfasta

centrifuge (1.0.3-2) §

centrifuge (1.0.3-3)

centrifuge

cfflib (2.0.5-3) §

cgview (0.0.20100111-4) §

cgview

changeo (0.4.6-1) §

changeo

charls (2.0.0+dfsg-1) §

libcharls2 (2.0.0+dfsg-1+b1; main)

chromhmm (1.19+dfsg-1) §

chromimpute (1.0.3+dfsg-1) §

ciftilib (1.5.3-2) §

libcifti0

circlator (1.5.6-1) §

circos (0.69.9+dfsg-1) §

circos

fonts-circos-symbols

circos-tools (0.23-1) §

circos-tools

clearcut (1.0.9-4) §

clearcut

clearcut-dbgsym

clonalframe (1.2-9) §

clonalframe

clonalframeml (1.11-3) §

clonalframeml

clonalorigin (1.0-3) §

clonalorigin

clustalo (1.2.4-2) §

clustalo

clustalw (2.1+lgpl-6) §

clustalw

clustalx (2.1+lgpl-8) §

clustalx

cluster3 (1.57-1; non-free) §

cnvkit (0.9.6-1) §

cnvkit (0.9.6-1+b1; main)

codonw (1.4.4-4) §

codonw

coils (2002-7) §

ncoils

concavity (0.1+dfsg.1-4) §

concavity

consensuscore (1.1.1+dfsg-1) §

conservation-code (20110309.0-7) §

conservation-code

crac (2.5.0+dfsg-3) §

crac (2.5.2+dfsg-2)

crac

ctdconverter (2.1-1) §

ctdconverter

ctdopts (1.2-3) §

ctn (3.2.0~dfsg-6) §

ctn (3.2.0~dfsg-6+b1; main)

ctsim (6.0.2-2) §

ctsim (6.0.2-3)

ctsim

ctsim-doc

cufflinks

cwltool (1.0.20190915164430+dfsg-1) §

cwltool

cycle (0.3.1-15) §

cycle

cyvcf2 (0.10.8-1) §

cyvcf2 (0.11.5-1)

python3-cyvcf2

daligner (1.0+git20180524.fd21879-1) §

daligner

dascrubber (1.1-1) §

dascrubber

dawg (1.2-2) §

dawg

dazzdb (1.0+git20180908.0bd5e07-1) §

dazzdb (1.0+git20190616.034f1ab-1)

dazzdb

dcm2niix (1.0.20181125-1) §

dcm2niix

dcmtk (3.6.4-2.1) §

dcmtk

dcmtk-doc

libdcmtk14

debian-med (3.3) §

med-config

med-epi

med-tasks

deepnano (0.0+git20170813.e8a621e-3) §

deepnano

delly (0.8.1-2) §

delly

dialign (2.2.1-10) §

dialign

dialign-t (1.0.2-12) §

dialign-tx

diamond-aligner (0.9.24+dfsg-1) §

diamond-aligner (0.9.25+dfsg-1)

dicom3tools (1.00~20180803063840-1) §

dicom3tools

dicompyler (0.4.2.0-2) §

dicompyler

dicomscope (3.6.0-20) §

dicomscope

dindel (1.01-wu1-3+dfsg-1) §

dindel (1.01-wu1-3+dfsg-1+b1; main)

discosnp (2.3.0-2) §

discosnp

disulfinder (1.2.11-8) §

disulfinder

dnaclust (3-6) §

dnaclust (3-7)

dnaclust

dssp (3.0.0-3) §

dssp (3.0.0-3+b1; main)

dwgsim (0.1.12-2) §

dwgsim

e-mem (1.0.1-2) §

e-mem

ea-utils (1.1.2+dfsg-5) §

ea-utils

ecopcr (1.0.1+dfsg-1) §

ecopcr

edfbrowser (1.67+dfsg-1) §

edfbrowser (1.70+dfsg-1)

edfbrowser

edflib (1.15-1) §

edflib (1.16-1)

libedf1

edtsurf (0.2009-6) §

edtsurf

eigensoft (7.2.1+dfsg-1) §

eigensoft

elastix (4.9.0-1) §

elastix (4.9.0-1+b1; main)

elastix-doc

elph (1.0.1-2) §

elph

embassy-domainatrix (0.1.660-3) §

embassy-domainatrix

embassy-domalign (0.1.660-3) §

embassy-domalign

embassy-domsearch (1:0.1.660-3) §

embassy-domsearch

embassy-phylip (3.69.660-3; non-free) §

embassy-phylip

emboss (6.6.0+dfsg-7) §

emboss (6.6.0+dfsg-7+b1; main)

emboss-doc

emboss-lib (6.6.0+dfsg-7+b1; main)

emboss-test

jemboss

emboss-explorer (2.2.0-10) §

emboss-explorer

emmax (0~beta.20100307-1) §

emmax

epcr (2.3.12-1-8) §

ncbi-epcr

epigrass (2.4.7-2) §

epigrass (2.5.0+dfsg-1)

epigrass

estscan (3.0.3-3) §

estscan

examl (3.0.21-2) §

examl

exonerate (2.4.0-4) §

exonerate

falcon (1.8.8-1) §

falcon

fast5 (0.6.5-2) §

fast5 (0.6.5-3)

fast5

fasta3 (36.3.8g-1; non-free) §

fasta3

fasta3-doc

fastaq (3.17.0-2) §

fastdnaml (1.2.2-14) §

fastdnaml

fastlink

fastlink-dbgsym

fastlink-doc

fastml (3.1-4) §

fastml (3.11-2)

fastml

fastp (0.19.6+dfsg-1) §

fastp (0.19.8+dfsg-1)

fastp (0.20.0+dfsg-1)

fastp

fastqc (0.11.8+dfsg-2) §

fastqtl (2.184+dfsg-6) §

fastqtl (2.184+dfsg-7)

fastqtl

fastqtl-doc

fasttree (2.1.10-2) §

fasttree (2.1.11-1)

fasttree

fastx-toolkit (0.0.14-6) §

fastx-toolkit

fermi-lite (0.1-5) §

libfml0 (0.1-5+b1; main)

ffindex (0.9.9.9-3) §

libffindex0

figtree (1.4.4-3) §

figtree

fis-gtm (6.3-007-1) §

fis-gtm-6.3-007 (6.3-007-1+b1; main)

fitgcp (0.0.20150429-3) §

fitgcp

flexbar (1:3.4.0-2) §

flexbar (1:3.5.0-2)

flexbar

freebayes (1.2.0-2) §

freebayes (1.3.1-1)

freebayes

freecontact (1.0.21-7) §

freecontact (1.0.21-7+b1; main)

libfreecontact-doc

libfreecontact0v5 (1.0.21-7+b1; main)

freemedforms-project (0.9.4-2) §

freediams (0.9.4-2+b2; main)

freediams-doc-en

freediams-doc-fr

freemedforms-common-resources

freemedforms-emr (0.9.4-2+b2; main)

freemedforms-emr-doc-en

freemedforms-emr-doc-fr

freemedforms-emr-resources

freemedforms-freedata

freemedforms-i18n

freemedforms-libs (0.9.4-2+b2; main)

freemedforms-project

freemedforms-theme

fsa (1.15.9+dfsg-4) §

fsa

fsm-lite (1.0-3) §

fw4spl (17.2.0-2) §

fw4spl

g2 (0.72-8) §

libg2-dev (0.72-8+b1; main)

libg20 (0.72-8+b1; main)

libg20-perl (0.72-8+b1; main)

galileo (0.5.1-6) §

galileo

galileo-daemon

garli (2.1-3) §

garli

garli-examples

garli-mpi

gasic (0.0.r19-4) §

gasic

gatb-core (1.4.1+git20181225.44d5a44+dfsg-3) §

gatb-core (1.4.1+git20190813.a73b6dd+dfsg-1)

gatb-core

gatb-core-testdata

libgatbcore-dev

libgatbcore2

gbrowse (2.56+dfsg-4) §

gbrowse

gbrowse-data

gdcm (2.8.8-9) §

gdcm-doc

libgdcm-java (2.8.8-9+b1; main)

libgdcm-tools (2.8.8-9+b1; main)

libgdcm2.8 (2.8.8-9+b1; main)

libvtkgdcm2.8a (2.8.8-9+b1; main)

python3-gdcm (2.8.8-9+b1; main)

python3-vtkgdcm (2.8.8-9+b1; main)

gdcm (2.8.9-1~exp1)

gdcm-doc

libgdcm-java

libgdcm-tools

libgdcm2.8