Hints
Steffen Moeller
We have the following e-mail addresses on file:
- moeller@debian.org
- steffen_moeller@gmx.de
Found 975 issues in 114 maintained sources. To see all packaging hints, please click on the source.
- ball 1.5.0+git20180813.37fc53c-6
- ball_1.5.0+git20180813.37fc53c-6.dsc (main)
- W dependency-is-not-multi-archified libballview1.5-dev depends on libballview1.5 (multi-arch: no)
- libball1.5-data_1.5.0+git20180813.37fc53c-6_all.deb (main)
- W national-encoding usr/share/BALL-1.5/gui-test/tutorial.btf
- W national-encoding usr/share/BALL-1.5/structures/test.btf
- W unusual-interpreter usr/share/BALL-1.5/Amber/converter/parmConverter.py /usr/bin/python
- libball1.5-doc_1.5.0+git20180813.37fc53c-6_all.deb (main)
- E malformed-override Unknown tag postinst-does-not-call-installdocs in line 1
- E malformed-override Unknown tag prerm-does-not-call-installdocs in line 2
- bcbio 1.2.5-1
- bcbio_1.2.5-1.dsc (contrib)
- bcbio_1.2.5-1_all.deb (contrib)
- E empty-manual-page usr/share/man/man1/bcbio_nextgen.1.gz
- W no-manual-page usr/bin/bcbio_fastq_umi_prep.py
- W no-manual-page usr/bin/bcbio_nextgen.py
- W no-manual-page usr/bin/bcbio_prepare_samples.py
- W no-manual-page usr/bin/bcbio_setup_genome.py
- W no-manual-page usr/bin/cwltool2wdl.py
- W script-not-executable usr/share/bcbio/config/examples/archived/NA12878-trio-sv-getdata.sh
- W script-not-executable usr/share/bcbio/config/examples/cancer-dream-syn3-getdata.sh
- W script-not-executable usr/share/bcbio/config/examples/cancer-giab-na12878-na24385-getdata.sh
- W script-not-executable usr/share/bcbio/config/examples/giab-validate-setup.sh
- W script-not-executable usr/share/bcbio/config/examples/HCC2218-sv-getdata.sh
- W script-not-executable usr/share/bcbio/config/examples/NA12878-exome-methodcmp-getdata.sh
- W script-not-executable usr/share/bcbio/config/examples/NA12878-hg38-validate-getdata.sh
- W script-not-executable usr/share/bcbio/config/examples/NA12878-sv-getdata.sh
- W script-not-executable usr/share/bcbio/config/examples/NA12878-trio-wgs-validate-getdata.sh
- W script-not-executable usr/share/bcbio/config/examples/NA12878.validate.sh
- W script-not-executable usr/share/bcbio/config/examples/NA24385-10x-getdata.sh
- W script-not-executable usr/share/bcbio/config/examples/rnaseq-seqc-getdata.sh
- W script-not-executable usr/share/bcbio/config/teaching/cancer-syn3-chr6-prep.sh
- biojava-live 1:1.7.1-9
- libbiojava-java-doc_1.7.1-9_all.deb (main)
- W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-3.5.1.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
- W national-encoding usr/share/doc/libbiojava-java/api/org/biojava/bio/program/das/dasalignment/DASException.html
- W national-encoding usr/share/doc/libbiojava-java/api/org/biojava/bio/structure/io/PDBParseException.html
- W national-encoding usr/share/doc/libbiojava-java/api/org/biojava/bio/structure/StructureException.html
- libbiojava1.7-java_1.7.1-9_all.deb (main)
- W bad-jar-name usr/share/java/biojava1.7.1.jar
- boinc 7.16.16+dfsg-1
- boinc_7.16.16+dfsg-1.dsc (main)
- E source-is-missing drupal/sites/default/boinc/modules/contrib/context/context_ui/json2.js line length is 3334 characters (>512)
- E source-is-missing drupal/sites/default/boinc/modules/contrib/tableofcontents/jquery.localscroll-min.js
- W national-encoding debian/po/sv.po
- boinc-client_7.16.16+dfsg-1_amd64.deb (main)
- E init.d-script-should-always-start-service etc/default/boinc-client (line 5)
- E systemd-service-file-outside-lib usr/lib/systemd/system/boinc-client.service
- W command-with-path-in-maintainer-script postinst:56 (in test syntax) /sbin/restorecon
- W command-with-path-in-maintainer-script postinst:56 (plain script) /sbin/restorecon
- boinc-screensaver_7.16.16+dfsg-1_amd64.deb (main)
- W no-manual-page usr/bin/boincscr
- libboinc-app-dev_7.16.16+dfsg-1_amd64.deb (main)
- W package-name-defined-in-config-h usr/include/boinc/config.h
- boinc-app-eah-brp 0.20170426+dfsg-10
- boinc-app-eah-brp_0.20170426+dfsg-10.dsc (main)
- W debian-rules-sets-dpkg-architecture-variable DEB_TARGET_ARCH_OS (line 148)
- W debian-watch-not-mangling-version opts="downloadurlmangle=s%-\d*\.zip%.zip%,uversionmangle=s/^/0./,repacksuffix=+dfsg1" https://einsteinathome.org/download/brp-src-release.html .*brp-src-release-([0-9]+)......\.zip debian update
- W package-uses-deprecated-debhelper-compat-version 9
- boinc-app-eah-brp_0.20170426+dfsg-10+b3_amd64.deb (main)
- W hardening-no-pie usr/lib/boinc-app-eah-brp/einsteinbinary_BRP4
- W recursive-privilege-change postinst:21
- caftools 2.0.3-1
- caftools_2.0.3-1.dsc (non-free)
- E duplicate-globbing-patterns debian/copyright src/* in lines 18 30
- W file-without-copyright-information debian/copyright aclocal.m4
- W file-without-copyright-information debian/copyright build-aux/ac_cond_with.m4
- W file-without-copyright-information debian/copyright build-aux/cc_warnings.m4
- W file-without-copyright-information debian/copyright build-aux/config.guess
- W file-without-copyright-information debian/copyright build-aux/config.sub
- W file-without-copyright-information debian/copyright build-aux/depcomp
- W file-without-copyright-information debian/copyright build-aux/install-sh
- W file-without-copyright-information debian/copyright build-aux/missing
- W file-without-copyright-information debian/copyright config/config.guess
- W file-without-copyright-information debian/copyright config/config.sub
- W file-without-copyright-information debian/copyright config/install-sh
- W file-without-copyright-information debian/copyright config/missing
- W file-without-copyright-information debian/copyright config/mkinstalldirs
- W file-without-copyright-information debian/copyright configure
- W file-without-copyright-information debian/copyright configure.in
- W file-without-copyright-information debian/copyright Makefile.am
- W file-without-copyright-information debian/copyright Makefile.in
- W file-without-copyright-information debian/copyright man/caf2ace.1
- W file-without-copyright-information debian/copyright man/caf2gap.1
- W file-without-copyright-information debian/copyright man/caf2phrap.1
- W file-without-copyright-information debian/copyright man/CAF.5
- W file-without-copyright-information debian/copyright man/cafcat.1
- W file-without-copyright-information debian/copyright man/caf_depad.1
- W file-without-copyright-information debian/copyright man/cafmerge.1
- W file-without-copyright-information debian/copyright man/caf_pad.1
- W file-without-copyright-information debian/copyright man/Makefile.am
- W file-without-copyright-information debian/copyright man/Makefile.in
- W file-without-copyright-information debian/copyright man/nd_clip.1
- W file-without-copyright-information debian/copyright man/phrapcons.1
- W file-without-copyright-information debian/copyright man/templates.1
- W file-without-copyright-information debian/copyright README
- W file-without-copyright-information debian/copyright tests/Makefile.am
- W file-without-copyright-information debian/copyright tests/Makefile.in
- W file-without-copyright-information debian/copyright tests/README
- W file-without-copyright-information debian/copyright tests/test_caf2gap
- W file-without-copyright-information debian/copyright tests/test_caf2phrap
- W file-without-copyright-information debian/copyright tests/test_caf_build_consensus
- W file-without-copyright-information debian/copyright tests/test_cafcat
- W file-without-copyright-information debian/copyright tests/test_caf_depad
- W file-without-copyright-information debian/copyright tests/test_caf_find_misassemblies
- W file-without-copyright-information debian/copyright tests/test_cafmerge
- W file-without-copyright-information debian/copyright tests/test_caf_pad
- W file-without-copyright-information debian/copyright tests/test_data/caf2phrap.caf
- W file-without-copyright-information debian/copyright tests/test_data/caf2phrap.fasta
- W file-without-copyright-information debian/copyright tests/test_data/caf2phrap.qual
- W file-without-copyright-information debian/copyright tests/test_data/caf_build_consensus.caf
- W file-without-copyright-information debian/copyright tests/test_data/cafcat.caf
- W file-without-copyright-information debian/copyright tests/test_data/caf_depad.caf
- W file-without-copyright-information debian/copyright tests/test_data/caf_find_misassemblies.caf
- W file-without-copyright-information debian/copyright tests/test_data/cafmerge.caf
- W file-without-copyright-information debian/copyright tests/test_data/caf_pad.caf
- W file-without-copyright-information debian/copyright tests/test_data/nd_clip.caf
- W file-without-copyright-information debian/copyright tests/test_data/nd_edit.caf
- W file-without-copyright-information debian/copyright tests/test_data/ne_clip.caf
- W file-without-copyright-information debian/copyright tests/test_data/np_edit.caf
- W file-without-copyright-information debian/copyright tests/test_data/phrapcons.caf
- W file-without-copyright-information debian/copyright tests/test_data/templates.out
- W file-without-copyright-information debian/copyright tests/test_data/test.caf
- W file-without-copyright-information debian/copyright tests/test_data/TestTools.pm
- W file-without-copyright-information debian/copyright tests/test_fix_quals
- W file-without-copyright-information debian/copyright tests/test_nd_clip
- W file-without-copyright-information debian/copyright tests/test_nd_edit
- W file-without-copyright-information debian/copyright tests/test_ne_clip
- W file-without-copyright-information debian/copyright tests/test_np_edit
- W file-without-copyright-information debian/copyright tests/test_phrapcons
- W file-without-copyright-information debian/copyright tests/test_scf2phd
- W file-without-copyright-information debian/copyright tests/test_sdict
- W file-without-copyright-information debian/copyright tests/test_templates
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/assembly.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/assinf.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/assinf.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/auto_edit.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/banded.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/base_edit.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/bases.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/bases.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/cafbin.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/caf_check.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/caf_check.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/caf.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/caf_read_scf.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/cafseq.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/cafseq.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/cafstrings.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/caf_types.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/classify.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/cl.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/cl.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/clipping.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/cmp.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/cmp.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/complement_scf.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/consensus.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/consensus.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/dir.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/fix_tags.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/lin_align.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/lin_align.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/Makefile.am
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/Makefile.in
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/myscf.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/ncr.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/ncr.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/padding.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/padding.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/pair_memory.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/pair_memory.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/priority_queue.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/priority_queue.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/readline.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/readline.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/scf_cache.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/searchpath.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/seed.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/seq_dict.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/seq_dict.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/seq_util.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/seq_util.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/sgrep.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/sw.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/sw.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/trace_align.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/trace_align.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/trace_edit.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/trace_quality.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/trace_quality.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/tree.h
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/tree_util.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/wordhash.c
- W globbing-patterns-out-of-order debian/copyright src/libsrc/* src/* src/libsrc/wordhash.h
- W useless-autoreconf-build-depends autotools-dev
- caftools_2.0.3-1_amd64.deb (non-free)
- W no-manual-page usr/bin/caf2ace
- W no-manual-page usr/bin/caf2fastq
- W no-manual-page usr/bin/caf2gap
- W no-manual-page usr/bin/caf2phrap
- W no-manual-page usr/bin/caf_build_consensus
- W no-manual-page usr/bin/cafcat
- W no-manual-page usr/bin/caf_check_pads
- W no-manual-page usr/bin/caf_depad
- W no-manual-page usr/bin/cafmerge
- W no-manual-page usr/bin/caf_pad
- W no-manual-page usr/bin/fix_quals
- W no-manual-page usr/bin/nd_clip
- W no-manual-page usr/bin/phrapcons
- W no-manual-page usr/bin/sdict
- W no-manual-page usr/bin/templates
- cbp2make 147+dfsg-4
- cbp2make_147+dfsg-4.dsc (main)
- W debian-watch-not-mangling-version http://sf.net/cbp2make/cbp2make-stl-rev(.*)\.tar\.gz
- W missing-field-in-dep5-copyright debian/copyright Copyright (paragraph at line 10)
- W missing-license-paragraph-in-dep5-copyright debian/copyright public domain (line 11)
- W space-in-std-shortname-in-dep5-copyright debian/copyright public domain (line 11)
- cnvkit 0.9.8-1
- cnvkit_0.9.8-1_amd64.deb (main)
- W breakout-link usr/lib/debian-med/bin/cnvkit.py -> usr/bin/cnvkit
- W groff-message usr/share/man/man1/cnvkit.1.gz (line 1) 8: warning [p 1, 1.7i]: cannot adjust line
- W groff-message usr/share/man/man1/cnvkit.1.gz (line 2) 8: warning [p 1, 1.8i]: cannot adjust line
- W groff-message usr/share/man/man1/cnvkit.1.gz (line 3) 14: warning [p 1, 2.8i, div 'an-div', 0.0i]: cannot adjust line
- W groff-message usr/share/man/man1/cnvkit.1.gz (line 4) 14: warning [p 1, 2.8i, div 'an-div', 0.2i]: cannot adjust line
- W no-manual-page usr/bin/cnvkit-cnv_annotate
- W no-manual-page usr/bin/cnvkit-cnv_expression_correlate
- W no-manual-page usr/bin/cnvkit-cnv_updater
- W no-manual-page usr/bin/cnvkit-guess_baits
- W no-manual-page usr/bin/cnvkit-skg_convert
- W no-manual-page usr/bin/snpfilter.sh
- W script-with-language-extension usr/bin/snpfilter.sh
- ecdsautils 0.3.2+git20151018-2
- ecdsautils_0.3.2+git20151018-2.dsc (main)
- ecdsautils_0.3.2+git20151018-2+b1_amd64.deb (main)
- eigensoft 7.2.1+dfsg-2
- eigensoft_7.2.1+dfsg-2_amd64.deb (main)
- W no-manual-page usr/bin/baseprog
- W no-manual-page usr/bin/convertf
- W no-manual-page usr/bin/eigenstrat
- W no-manual-page usr/bin/eigenstratQTL
- W no-manual-page usr/bin/evec2pca
- W no-manual-page usr/bin/evec2pca-ped
- W no-manual-page usr/bin/gc-eigensoft
- W no-manual-page usr/bin/mergeit
- W no-manual-page usr/bin/pca
- W no-manual-page usr/bin/pcatoy
- W no-manual-page usr/bin/smartpca
- W no-manual-page usr/bin/smartrel
- W no-manual-page usr/bin/smshrink
- W no-manual-page usr/bin/twstats
- estscan 3.0.3-5
- estscan_3.0.3-5_amd64.deb (main)
- W no-manual-page usr/bin/estscan
- W no-manual-page usr/bin/evaluate_model
- W no-manual-page usr/bin/extract_EST
- W no-manual-page usr/bin/extract_UG_EST
- W no-manual-page usr/bin/makesmat
- W no-manual-page usr/bin/maskred
- W no-manual-page usr/bin/prepare_data
- W no-manual-page usr/bin/winsegshuffle
- fasta3 36.3.8h.2020-02-11-4~0exp0simde
- fasta3_36.3.8h.2020-02-11-4~0exp0simde.dsc (main)
- W build-depends-on-1-revision Build-Depends: libsimde-dev (>= 0.7.0~rc-1)
- fasta3_36.3.8h.2020-02-11-4~0exp0simde_amd64.deb (main)
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/annot_blast_btop3.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/annot_blast_btop4.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_genome_seq.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_protein.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_protein_sql.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_protein_sql_www.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_refseq.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_uniprot.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_up_prot_iso_sql.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/map_exon_coords.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/relabel_domains.py /usr/bin/python3
- E python3-script-but-no-python3-dep usr/share/fasta3/scripts/rename_exons.py /usr/bin/python3
- W bad-whatis-entry usr/share/man/man1/ps_lav.1.gz
- W executable-not-elf-or-script usr/share/fasta3/scripts/color_defs.pl
- W groff-message usr/share/man/man1/fastf3.1.gz (line 1) 35: warning: macro 'Y',' not defined
- W groff-message usr/share/man/man1/prss3.1.gz (line 1) 54: warning: macro 'z-values'' not defined
- W no-manual-page usr/bin/fastf36
- W no-manual-page usr/bin/fastm36
- W no-manual-page usr/bin/fasts36
- W no-manual-page usr/bin/fastx36
- W no-manual-page usr/bin/fasty36
- W no-manual-page usr/bin/ggsearch36
- W no-manual-page usr/bin/glsearch36
- W no-manual-page usr/bin/lalign36
- W no-manual-page usr/bin/ssearch36
- W no-manual-page usr/bin/tfastf36
- W no-manual-page usr/bin/tfastm36
- W no-manual-page usr/bin/tfasts36
- W no-manual-page usr/bin/tfastx36
- W no-manual-page usr/bin/tfasty36
- W wrong-manual-section usr/share/man/man1/map_db.1.gz:1 1 != September, 1999
- gemma 0.98.4+dfsg-3
- gemma_0.98.4+dfsg-3_amd64.deb (main)
- W no-manual-page usr/bin/gemma
- gentle 1.9+cvs20100605+dfsg1-9
- gentle_1.9+cvs20100605+dfsg1-9_amd64.deb (main)
- W national-encoding usr/share/gentle/tips_de.txt
- getdata 0.2-4
- getdata_0.2-4.dsc (main)
- W homepage-refers-to-obsolete-debian-infrastructure http://debian-med.alioth.debian.org
- getdata_0.2-4_all.deb (main)
- W homepage-refers-to-obsolete-debian-infrastructure http://debian-med.alioth.debian.org
- ghmm 0.9~rc3-4
- ghmm_0.9~rc3-4_amd64.deb (main)
- W breakout-link usr/lib/ghmm/bin/cluster -> usr/bin/ghmm-cluster
- W no-manual-page usr/bin/ghmm-cluster
- W no-manual-page usr/bin/ghmm-config
- W no-manual-page usr/bin/HMMEd
- W no-manual-page usr/bin/probdist
- W no-manual-page usr/bin/scluster
- W no-manual-page usr/bin/smix_hmm
- htslib 1.11-4
- libhts3_1.11-4_amd64.deb (main)
- W bad-whatis-entry usr/share/man/man7/htslib-s3-plugin.7.gz
- hts-nim-tools 0.2.1-1
- hts-nim-tools_0.2.1-1_amd64.deb (main)
- W no-manual-page usr/bin/hts_nim_tools
- icu4j 68.2-2
- icu4j_68.2-2.dsc (main)
- E duplicate-globbing-patterns debian/copyright main/tests/core/src/com/ibm/icu/dev/test/duration/DataReadWriteTest.java in lines 8 8
- igdiscover 0.11-3
- igdiscover-doc_0.11-3_all.deb (main)
- W embedded-javascript-library usr/share/doc/igdiscover/html/_static/language_data.js please use sphinx
- igor 1.4.0+dfsg-2
- igor_1.4.0+dfsg-2_amd64.deb (main)
- W no-manual-page usr/bin/igor-compute_pgen
- jdeb 1.8-1
- libjdeb-java_1.8-1_all.deb (main)
- W bad-jar-name usr/share/java/jdeb.jar
- jgromacs 1.0-1.1
- jgromacs_1.0-1.1.dsc (main)
- E debian-upstream-obsolete-path debian/upstream
- E temporary-debhelper-file debhelper.log
- E unpack-message-for-orig jgromacs_1.0.orig.tar.gz tar: A lone zero block at 976
- W file-without-copyright-information debian/copyright .classpath
- W file-without-copyright-information debian/copyright copyright.txt
- W file-without-copyright-information debian/copyright licence.txt
- W file-without-copyright-information debian/copyright .project
- W file-without-copyright-information debian/copyright template.xml
- W no-nmu-in-changelog
- W package-uses-deprecated-debhelper-compat-version 8
- W vcs-obsolete-in-debian-infrastructure Browser http://anonscm.debian.org/viewvc/debichem/unstable/jgromacs
- W vcs-obsolete-in-debian-infrastructure Svn svn://svn.debian.org/svn/debichem/unstable/jgromacs
- libjgromacs-java_1.0-1.1_all.deb (main)
- libjgromacs-java-doc_1.0-1.1_all.deb (main)
- W embedded-javascript-library usr/share/doc/libjgromacs-java-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libjgromacs-java-doc/api/jquery/jquery-3.5.1.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libjgromacs-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libjgromacs-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libjgromacs-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libjgromacs-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
- W priority-extra-is-replaced-by-priority-optional
- joptsimple 5.0.4-4
- libjoptsimple-java_5.0.4-4_all.deb (main)
- W bad-jar-name usr/share/java/joptsimple.jar
- kdgcommons-java 1.0.15-1.1
- kdgcommons-java_1.0.15-1.1.dsc (main)
- W no-nmu-in-changelog
- W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/pkg-java/kdgcommons-java.git
- W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/pkg-java/kdgcommons-java.git
- libkdgcommons-java_1.0.15-1.1_all.deb (main)
- W bad-jar-name usr/share/java/kdgcommons.jar
- libbigwig 0.4.4+dfsg-2
- libbigwig-doc_0.4.4+dfsg-2_all.deb (main)
- W privacy-breach-generic usr/share/doc/libbigwig-dev/html/md_README.html [<img src="https://travis-ci.org/dpryan79/libbigwig.svg?branch=master" alt="master build status" class="inline"/>] (https://travis-ci.org/dpryan79/libbigwig.svg?branch=master)
- W privacy-breach-generic usr/share/doc/libbigwig-dev/html/md_README.html [<img src="https://zenodo.org/badge/doi/10.5281/zenodo.45278.svg" alt="doi" class="inline"/>] (https://zenodo.org/badge/doi/10.5281/zenodo.45278.svg)
- libchado-perl 1.31-6
- libchado-perl_1.31-6.dsc (main)
- W tab-in-license-text debian/copyright (starting at line 56)
- libchado-perl_1.31-6_all.deb (main)
- E malformed-override Unknown tag package-contains-upstream-install-documentation in line 1
- libiscwt-java 5.3.20100629-4.1
- libiscwt-java_5.3.20100629-4.1.dsc (main)
- W no-nmu-in-changelog
- W package-uses-deprecated-debhelper-compat-version 9
- W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/pkg-java/libiscwt-java.git
- W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/pkg-java/libiscwt-java.git
- libiscwt-java_5.3.20100629-4.1_all.deb (main)
- libiscwt-java-doc_5.3.20100629-4.1_all.deb (main)
- W embedded-javascript-library usr/share/doc/libiscwt-java-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libiscwt-java-doc/api/jquery/jquery-3.5.1.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libiscwt-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libiscwt-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libiscwt-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libiscwt-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
- W priority-extra-is-replaced-by-priority-optional
- libisfreetype-java 5.3.20100629-3.1
- libisfreetype-java_5.3.20100629-3.1.dsc (main)
- W no-nmu-in-changelog
- W package-uses-deprecated-debhelper-compat-version 7
- W vcs-field-uses-not-recommended-uri-format Svn svn+ssh://svn.debian.org/svn/pkg-java/trunk/libisfreetype-java/
- W vcs-obsolete-in-debian-infrastructure Browser http://svn.debian.org/wsvn/pkg-java/trunk/libisfreetype-java/
- W vcs-obsolete-in-debian-infrastructure Svn svn+ssh://svn.debian.org/svn/pkg-java/trunk/libisfreetype-java/
- libisfreetype-java_5.3.20100629-3.1_all.deb (main)
- libisfreetype-java-doc_5.3.20100629-3.1_all.deb (main)
- W embedded-javascript-library usr/share/doc/libisfreetype-java-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libisfreetype-java-doc/api/jquery/jquery-3.5.1.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libisfreetype-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libisfreetype-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libisfreetype-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libisfreetype-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
- W priority-extra-is-replaced-by-priority-optional
- libisnativec-java 5.3.20100629+fix-4
- libisnativec-java-doc_5.3.20100629+fix-4_all.deb (main)
- W embedded-javascript-library usr/share/doc/libisnativec-java-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libisnativec-java-doc/api/jquery/jquery-3.3.1.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libisnativec-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libisnativec-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libisnativec-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libisnativec-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
- libisrt-java 4.8.20100629-3
- libisrt-java_4.8.20100629-3.dsc (main)
- W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/viewvc/pkg-java/trunk/libisrt-java/
- W vcs-obsolete-in-debian-infrastructure Svn svn://anonscm.debian.org/pkg-java/trunk/libisrt-java
- libjgrapht0.6-java 0.6.0-12
- libjgrapht0.6-java_0.6.0-12_all.deb (main)
- W classpath-contains-relative-path usr/share/java/jgrapht-0.6.0.jar: lib/jgraph.jar
- W national-encoding usr/share/doc/libjgrapht0.6-java/README.html
- libjpedal-jbig2-java 20100117-1.1
- libjpedal-jbig2-java_20100117-1.1.dsc (main)
- libjpedal-jbig2-java_20100117-1.1_all.deb (main)
- W bad-jar-name usr/share/java/jbig2.jar
- W priority-extra-is-replaced-by-priority-optional
- libmaus2 2.0.768+dfsg-1
- libmaus2-2_2.0.768+dfsg-1_amd64.deb (main)
- W shared-library-lacks-prerequisites usr/lib/x86_64-linux-gnu/libmaus2/2.0.768/libmaus2_scram_mod.so
- libtaverna2-server-java 0.0.3-1
- libtaverna2-server-java_0.0.3-1.dsc (main)
- W package-uses-deprecated-debhelper-compat-version 7
- W syntax-error-in-dep5-copyright debian/copyright: Continuation line not in paragraph (line 16). Missing a dot on the previous line?
- W vcs-obsolete-in-debian-infrastructure Browser http://anonscm.debian.org/viewvc/pkg-java/trunk/libtaverna2-server-java
- W vcs-obsolete-in-debian-infrastructure Svn svn://anonscm.debian.org/pkg-java/trunk/libtaverna2-server-java
- libtaverna2-server-java_0.0.3-1_all.deb (main)
- W bad-jar-name usr/share/java/t2-server-client.jar
- libtfbs-perl 0.7.1-3
- libtfbs-perl_0.7.1-3.dsc (main)
- W uses-deprecated-adttmp debian/tests/run-unit-test (line 5)
- W uses-deprecated-adttmp debian/tests/run-unit-test (line 6)
- W uses-deprecated-adttmp debian/tests/run-unit-test (line 8)
- W uses-deprecated-adttmp debian/tests/run-unit-test (line 9)
- libtfbs-perl_0.7.1-3+b2_amd64.deb (main)
- W bad-whatis-entry usr/share/man/man3/TFBS::SitePair.3pm.gz
- W national-encoding usr/share/doc/libtfbs-perl/examples/t/transfac_new/matrix.dat
- W national-encoding usr/share/doc/libtfbs-perl/examples/t/transfac_old/matrix.dat
- W pod-conversion-message usr/share/man/man3/TFBS::Matrix::Alignment.3pm.gz:196
- libusb-java 0.8+ztex20090101-9
- libusb-java_0.8+ztex20090101-9_all.deb (main)
- W bad-jar-name usr/share/java/libusb.jar
- libusb-java-doc_0.8+ztex20090101-9_all.deb (main)
- W embedded-javascript-library usr/share/doc/libusb-java/html/jquery/external/jquery/jquery.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libusb-java/html/jquery/jquery-3.5.1.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libusb-java/html/jquery/jquery-ui.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libusb-java/html/jquery/jquery-ui.js please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libusb-java/html/jquery/jquery-ui.min.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libusb-java/html/jquery/jquery-ui.min.js please use libjs-jquery-ui
- libusb-java-lib_0.8+ztex20090101-9_amd64.deb (main)
- E lacks-ldconfig-trigger usr/lib/libusbJava.so.0.8
- W link-to-shared-library-in-wrong-package usr/lib/libusbJava.so.0.8 usr/lib/libusbJavaSh.so
- W maintscript-calls-ldconfig postinst
- W shared-library-lacks-version usr/lib/libusbJava.so.0.8 libusbJavaSh.so
- maven-source-plugin 3.0.1-2
- maven-source-plugin_3.0.1-2.dsc (main)
- W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/pkg-java/maven-source-plugin.git
- W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/pkg-java/maven-source-plugin.git
- libmaven-source-plugin-java_3.0.1-2_all.deb (main)
- W bad-jar-name usr/share/java/maven-source-plugin.jar
- W maven-plugin-in-usr-share-java usr/share/java/maven-source-plugin.jar
- milib 1.13-1
- libmilib-java_1.13-1_all.deb (main)
- W bad-jar-name usr/share/java/milib.jar
- mosdepth 0.3.1+ds-2
- mosdepth_0.3.1+ds-2_amd64.deb (main)
- W useless-whatis-entry usr/share/man/man1/mosdepth.1.gz
- multiqc 1.9+dfsg-3
- multiqc_1.9+dfsg-3_all.deb (main)
- W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/css/bootstrap.min.css -> usr/share/javascript/bootstrap/css/bootstrap.min.css
- W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot -> usr/share/fonts-glyphicons/glyphicons-halflings-regular.eot
- W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg -> usr/share/fonts-glyphicons/glyphicons-halflings-regular.svg
- W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf -> usr/share/fonts-glyphicons/glyphicons-halflings-regular.ttf
- W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2 -> usr/share/fonts-glyphicons/glyphicons-halflings-regular.woff2
- W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff -> usr/share/fonts-glyphicons/glyphicons-halflings-regular.woff
- W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/js/packages/bootstrap.min.js -> usr/share/javascript/bootstrap/js/bootstrap.min.js
- W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> usr/share/javascript/jquery/jquery.min.js
- W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> usr/share/javascript/jquery-tablesorter/jquery.tablesorter.min.js
- W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> usr/share/javascript/jquery-ui/jquery-ui.min.js
- W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default_dev/includes.html [<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/filesaver.js/1.3.8/filesaver.min.js">] (https://cdnjs.cloudflare.com/ajax/libs/filesaver.js/1.3.8/filesaver.min.js)
- W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default_dev/includes.html [<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/lz-string/1.4.4/lz-string.min.js">] (https://cdnjs.cloudflare.com/ajax/libs/lz-string/1.4.4/lz-string.min.js)
- W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://cdnjs.cloudflare.com/ajax/libs/filesaver.js/1.3.8/filesaver.min.js" type="text/javascript">] (https://cdnjs.cloudflare.com/ajax/libs/filesaver.js/1.3.8/filesaver.min.js)
- W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery-toast-plugin/1.3.2/jquery.toast.min.js" type="text/javascript">] (https://cdnjs.cloudflare.com/ajax/libs/jquery-toast-plugin/1.3.2/jquery.toast.min.js)
- W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://cdnjs.cloudflare.com/ajax/libs/lz-string/1.4.4/lz-string.min.js" type="text/javascript">] (https://cdnjs.cloudflare.com/ajax/libs/lz-string/1.4.4/lz-string.min.js)
- W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://code.highcharts.com/highcharts.export-csv.js" type="text/javascript">] (https://code.highcharts.com/highcharts.export-csv.js)
- W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://code.highcharts.com/highcharts.exporting.js" type="text/javascript">] (https://code.highcharts.com/highcharts.exporting.js)
- W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://code.highcharts.com/highcharts.heatmap.js" type="text/javascript">] (https://code.highcharts.com/highcharts.heatmap.js)
- W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://code.highcharts.com/highcharts.js" type="text/javascript">] (https://code.highcharts.com/highcharts.js)
- W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://code.highcharts.com/highcharts.offline-exporting.js" type="text/javascript">] (https://code.highcharts.com/highcharts.offline-exporting.js)
- myhdl 0.11-1
- myhdl-doc_0.11-1_all.deb (main)
- W embedded-javascript-library usr/share/doc/myhdl-doc/html/_static/language_data.js please use sphinx
- nanostat 1.4.0-3
- python3-nanostat_1.4.0-3_all.deb (main)
- W useless-whatis-entry usr/share/man/man1/NanoStat.1.gz
- paml 4.9j+dfsg-3
- paml_4.9j+dfsg-3_amd64.deb (main)
- W breakout-link usr/lib/debian-med/bin/chi2 -> usr/lib/paml/bin/chi2
- W breakout-link usr/lib/debian-med/bin/evolver -> usr/lib/paml/bin/evolver
- W no-manual-page usr/bin/baseml
- W no-manual-page usr/bin/basemlg
- W no-manual-page usr/bin/chi2
- W no-manual-page usr/bin/codeml
- W no-manual-page usr/bin/mcmctree
- W no-manual-page usr/bin/paml-evolver
- W no-manual-page usr/bin/pamp
- W no-manual-page usr/bin/yn00
- pdb2pqr 2.1.1+dfsg-7
- pdb2pqr_2.1.1+dfsg-7+b1_amd64.deb (main)
- W unusual-interpreter usr/share/pdb2pqr/propka30/Source/corresponding_atoms.py /usr/bin/python
- W unusual-interpreter usr/share/pdb2pqr/propka30/Source/rotate.py /usr/bin/python
- picard-tools 2.24.1+dfsg-1
- libpicard-java-doc_2.24.1+dfsg-1_all.deb (main)
- W embedded-javascript-library usr/share/doc/libpicard-java/api/jquery/jquery-3.5.1.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/libpicard-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libpicard-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libpicard-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libpicard-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
- picopore 1.2.0-2
- picopore_1.2.0-2_all.deb (main)
- W groff-message usr/share/man/man1/picopore-rename.1.gz (line 1) 6: warning: macro 'b' not defined
- pigx-rnaseq 0.0.10+ds-2
- pigx-rnaseq_0.0.10+ds-2_all.deb (main)
- W useless-whatis-entry usr/share/man/man1/pigx-rnaseq.1.gz
- pizzly 0.37.3+ds-5
- pizzly_0.37.3+ds-5_amd64.deb (main)
- W no-manual-page usr/bin/flatten_json.py
- W no-manual-page usr/bin/get_fragment_length.py
- W no-manual-page usr/bin/pizzly_flatten_json.py
- W script-with-language-extension usr/bin/flatten_json.py
- W script-with-language-extension usr/bin/get_fragment_length.py
- plink 1.07+dfsg-3
- plink_1.07+dfsg-3.dsc (main)
- W incorrect-packaging-filename debian/NEWS.Debian -> debian/NEWS
- W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 11)
- W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 12)
- W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 24)
- W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 8)
- W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 9)
- plink_1.07+dfsg-3_amd64.deb (main)
- W breakout-link usr/lib/debian-med/share/man/man1/plink.1.gz -> usr/share/man/man1/p-link.1.gz
- W breakout-link usr/lib/plink/plink -> usr/lib/debian-med/bin/plink
- pluto-find-orb 0.0~git20180227-4
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- W no-manual-page usr/bin/fo_serve.cgi
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- W no-nmu-in-changelog
- W package-uses-deprecated-debhelper-compat-version 9
- W vcs-obsolete-in-debian-infrastructure Browser http://anonscm.debian.org/cgit/pkg-java/practicalxml-java.git
- W vcs-obsolete-in-debian-infrastructure Git git://anonscm.debian.org/pkg-java/practicalxml-java.git
- libpracticalxml-java_1.1.19-1.1_all.deb (main)
- W bad-jar-name usr/share/java/practicalxml.jar
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- W breakout-link usr/lib/debian-med/share/man/man1/pscan.1.gz -> usr/share/man/man1/pscan-tfbs.1.gz
- pychopper 2.5.0-1
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- W groff-message usr/share/man/man1/pychopper.1.gz (line 10) 96: a special character is not allowed in a name
- W groff-message usr/share/man/man1/pychopper.1.gz (line 11) 101: a special character is not allowed in a name
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- W groff-message usr/share/man/man1/pychopper.1.gz (line 15) 115: a special character is not allowed in a name
- W groff-message usr/share/man/man1/pychopper.1.gz (line 1) 60: warning: macro 'Binput_fastx' not defined
- W groff-message usr/share/man/man1/pychopper.1.gz (line 16) 118: a special character is not allowed in a name
- W groff-message usr/share/man/man1/pychopper.1.gz (line 17) 123: a special character is not allowed in a name
- W groff-message usr/share/man/man1/pychopper.1.gz (line 18) 128: a special character is not allowed in a name
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- W groff-message usr/share/man/man1/pychopper.1.gz (line 24) 154: a special character is not allowed in a name
- W groff-message usr/share/man/man1/pychopper.1.gz (line 2) 63: warning: macro 'Boutput_fastx' not defined
- W groff-message usr/share/man/man1/pychopper.1.gz (line 3) 69: a special character is not allowed in a name
- W groff-message usr/share/man/man1/pychopper.1.gz (line 4) 72: a special character is not allowed in a name
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- W groff-message usr/share/man/man1/pychopper.1.gz (line 6) 78: a special character is not allowed in a name
- W groff-message usr/share/man/man1/pychopper.1.gz (line 7) 83: a special character is not allowed in a name
- W groff-message usr/share/man/man1/pychopper.1.gz (line 8) 86: a special character is not allowed in a name
- W groff-message usr/share/man/man1/pychopper.1.gz (line 9) 91: a special character is not allowed in a name
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- python-alignlib_0.1.1+dfsg-1.1.dsc (main)
- W debian-watch-not-mangling-version https://pypi.debian.net/alignlib/alignlib-(.+)\.tar\.gz
- python-anndata 0.7.5+ds-3
- python-anndata_0.7.5+ds-3.dsc (main)
- W patch-file-present-but-not-mentioned-in-series use-is-categorical-dtype.patch
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- E unknown-file-in-python-module-directory usr/lib/python3/dist-packages/test.h5ad
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- E old-dpmt-vcs Browser
- E old-dpmt-vcs Git
- E python-teams-merged Debian Python Modules Team <python-modules-team@lists.alioth.debian.org>
- W package-uses-deprecated-debhelper-compat-version 9
- python-bioblend-doc_0.7.0-3_all.deb (main)
- W embedded-javascript-library usr/share/doc/python-bioblend-doc/singlehtml/_static/doctools.js please use sphinx
- W embedded-javascript-library usr/share/doc/python-bioblend-doc/singlehtml/_static/language_data.js please use sphinx
- W embedded-javascript-library usr/share/doc/python-bioblend-doc/singlehtml/_static/searchtools.js please use sphinx
- python-bx 0.8.9-1
- python3-bx_0.8.9-1_amd64.deb (main)
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- W no-manual-page usr/bin/align_print_template.py
- W no-manual-page usr/bin/axt_extract_ranges.py
- W no-manual-page usr/bin/axt_to_fasta.py
- W no-manual-page usr/bin/axt_to_lav.py
- W no-manual-page usr/bin/axt_to_maf.py
- W no-manual-page usr/bin/bed_bigwig_profile.py
- W no-manual-page usr/bin/bed_build_windows.py
- W no-manual-page usr/bin/bed_complement.py
- W no-manual-page usr/bin/bed_count_by_interval.py
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- W no-manual-page usr/bin/bed_coverage.py
- W no-manual-page usr/bin/bed_diff_basewise_summary.py
- W no-manual-page usr/bin/bed_extend_to.py
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- W no-manual-page usr/bin/bed_rand_intersect.py
- W no-manual-page usr/bin/bed_subtract_basewise.py
- W no-manual-page usr/bin/bnMapper.py
- W no-manual-page usr/bin/div_snp_table_chr.py
- W no-manual-page usr/bin/find_in_sorted_file.py
- W no-manual-page usr/bin/gene_fourfold_sites.py
- W no-manual-page usr/bin/get_scores_in_intervals.py
- W no-manual-page usr/bin/interval_count_intersections.py
- W no-manual-page usr/bin/interval_join.py
- W no-manual-page usr/bin/int_seqs_to_char_strings.py
- W no-manual-page usr/bin/lav_to_axt.py
- W no-manual-page usr/bin/lav_to_maf.py
- W no-manual-page usr/bin/line_select.py
- W no-manual-page usr/bin/lzop_build_offset_table.py
- W no-manual-page usr/bin/maf_build_index.py
- W no-manual-page usr/bin/maf_chop.py
- W no-manual-page usr/bin/maf_chunk.py
- W no-manual-page usr/bin/maf_col_counts_all.py
- W no-manual-page usr/bin/maf_col_counts.py
- W no-manual-page usr/bin/maf_count.py
- W no-manual-page usr/bin/maf_covered_ranges.py
- W no-manual-page usr/bin/maf_covered_regions.py
- W no-manual-page usr/bin/maf_div_sites.py
- W no-manual-page usr/bin/maf_drop_overlapping.py
- W no-manual-page usr/bin/maf_extract_chrom_ranges.py
- W no-manual-page usr/bin/maf_extract_ranges_indexed.py
- W no-manual-page usr/bin/maf_extract_ranges.py
- W no-manual-page usr/bin/maf_filter_max_wc.py
- W no-manual-page usr/bin/maf_filter.py
- W no-manual-page usr/bin/maf_gap_frequency.py
- W no-manual-page usr/bin/maf_gc_content.py
- W no-manual-page usr/bin/maf_interval_alignibility.py
- W no-manual-page usr/bin/maf_limit_to_species.py
- W no-manual-page usr/bin/maf_mapping_word_frequency.py
- W no-manual-page usr/bin/maf_mask_cpg.py
- W no-manual-page usr/bin/maf_mean_length_ungapped_piece.py
- W no-manual-page usr/bin/maf_percent_columns_matching.py
- W no-manual-page usr/bin/maf_percent_identity.py
- W no-manual-page usr/bin/maf_print_chroms.py
- W no-manual-page usr/bin/maf_print_scores.py
- W no-manual-page usr/bin/maf_randomize.py
- W no-manual-page usr/bin/maf_region_coverage_by_src.py
- W no-manual-page usr/bin/maf_select.py
- W no-manual-page usr/bin/maf_shuffle_columns.py
- W no-manual-page usr/bin/maf_species_in_all_files.py
- W no-manual-page usr/bin/maf_split_by_src.py
- W no-manual-page usr/bin/maf_thread_for_species.py
- W no-manual-page usr/bin/maf_tile_2bit.py
- W no-manual-page usr/bin/maf_tile_2.py
- W no-manual-page usr/bin/maf_tile.py
- W no-manual-page usr/bin/maf_to_axt.py
- W no-manual-page usr/bin/maf_to_concat_fasta.py
- W no-manual-page usr/bin/maf_to_fasta.py
- W no-manual-page usr/bin/maf_to_int_seqs.py
- W no-manual-page usr/bin/maf_translate_chars.py
- W no-manual-page usr/bin/maf_truncate.py
- W no-manual-page usr/bin/maf_word_frequency.py
- W no-manual-page usr/bin/mask_quality.py
- W no-manual-page usr/bin/mMK_bitset.py
- W no-manual-page usr/bin/nib_chrom_intervals_to_fasta.py
- W no-manual-page usr/bin/nib_intervals_to_fasta.py
- W no-manual-page usr/bin/nib_length.py
- W no-manual-page usr/bin/one_field_per_line.py
- W no-manual-page usr/bin/out_to_chain.py
- W no-manual-page usr/bin/prefix_lines.py
- W no-manual-page usr/bin/pretty_table.py
- W no-manual-page usr/bin/qv_to_bqv.py
- W no-manual-page usr/bin/random_lines.py
- W no-manual-page usr/bin/table_add_column.py
- W no-manual-page usr/bin/table_filter.py
- W no-manual-page usr/bin/tfloc_summary.py
- W no-manual-page usr/bin/ucsc_gene_table_to_intervals.py
- W no-manual-page usr/bin/wiggle_to_array_tree.py
- W no-manual-page usr/bin/wiggle_to_binned_array.py
- W no-manual-page usr/bin/wiggle_to_chr_binned_array.py
- W no-manual-page usr/bin/wiggle_to_simple.py
- W unusual-interpreter usr/lib/python3/dist-packages/bx/pwm/bed_score_aligned_pwm.py python2.4
- W unusual-interpreter usr/lib/python3/dist-packages/bx/pwm/bed_score_aligned_string.py python2.4
- W unusual-interpreter usr/lib/python3/dist-packages/bx/pwm/maf_select_motifs.py python2.4
- W unusual-interpreter usr/lib/python3/dist-packages/bx/pwm/pwm_score_maf.py /usr/bin/python2.4
- W unusual-interpreter usr/lib/python3/dist-packages/bx/pwm/pwm_score_motifs.py python2.4
- W unusual-interpreter usr/lib/python3/dist-packages/bx/pwm/pwm_score_positions.py python2.4
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- W embedded-javascript-library usr/share/doc/python-cogent-doc/html/_static/bootstrap-2.3.2/js/bootstrap.js please use libjs-bootstrap
- W embedded-javascript-library usr/share/doc/python-cogent-doc/html/_static/bootstrap-3.3.7/js/bootstrap.js please use libjs-bootstrap
- W embedded-javascript-library usr/share/doc/python-cogent-doc/html/_static/doctools.js please use sphinx
- W embedded-javascript-library usr/share/doc/python-cogent-doc/html/_static/js/jquery-1.11.0.min.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/python-cogent-doc/html/_static/language_data.js please use sphinx
- W embedded-javascript-library usr/share/doc/python-cogent-doc/html/_static/searchtools.js please use sphinx
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- W truetype-font-prohibits-installable-embedding [edit only] usr/lib/R/site-library/rmarkdown/rmd/h/bootstrap/css/fonts/OpenSansItalic.ttf
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- W truetype-font-prohibits-installable-embedding [edit only] usr/lib/R/site-library/rmarkdown/rmd/h/bootstrap/css/fonts/OpenSansLight.ttf
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- r-cran-rook 1.1-1+dfsg-3
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- E library-not-linked-against-libc usr/lib/R/site-library/Rook/libs/Rook.so
- r-cran-rook-examples_1.1-1+dfsg-3_all.deb (main)
- W breakout-link usr/lib/R/site-library/Rook/exampleApps/Hmisc/javascript/prototype.js -> usr/share/javascript/prototype/prototype.js
- r-cran-rsgcc 1.0.6-2
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- r-cran-rslurm 0.5.0-2
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- W script-not-executable usr/lib/R/site-library/rslurm/templates/submit_sh.txt
- W script-not-executable usr/lib/R/site-library/rslurm/templates/submit_single_sh.txt
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- W debian-watch-not-mangling-version opts="repack,compression=gz,repacksuffix=+ds" https://cloud.r-project.org/src/contrib/tcR_@ANY_VERSION@@ARCHIVE_EXT@
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- W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/jquery-3.5.1.js please use libjs-jquery
- W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
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- W no-manual-page usr/bin/trace2dbest.pl
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- W no-manual-page usr/bin/checkbcphd
- W no-manual-page usr/bin/checkqv
- W no-manual-page usr/bin/checkqvphd
- W no-manual-page usr/bin/lut
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- W embedded-javascript-library usr/share/doc/libwsdl4j-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libwsdl4j-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libwsdl4j-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
- W embedded-javascript-library usr/share/doc/libwsdl4j-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
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