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Olivier Sallou

We have the following e-mail addresses on file:

• osallou@debian.org
• olivier.sallou@irisa.fr

Found 529 issues in 55 maintained sources. To see all packaging hints, please click on the source.

• barclay 2.1.0-3.1
• barclay_2.1.0-3.1.dsc (main)
  • W global-files-wildcard-not-first-paragraph-in-dep5-copyright debian/copyright (line 9)
  • W globbing-patterns-out-of-order debian/copyright src/main/java/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.java * src/main/java/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.java
  • W no-nmu-in-changelog
• beast-mcmc 1.10.4+dfsg-2
• beast-mcmc_1.10.4+dfsg-2_all.deb (main)
  • W no-manual-page usr/bin/beast-tracer
  • W no-manual-page usr/bin/loganalyser
  • W no-manual-page usr/bin/logcombiner
  • W no-manual-page usr/bin/treeannotator
  • W no-manual-page usr/bin/treestat
• libnucleotidelikelihoodcore0_1.10.4+dfsg-2_amd64.deb (main)
  • W shared-library-lacks-prerequisites usr/lib/libNucleotideLikelihoodCore.so.0
• bedops 2.4.39+dfsg1-2
• bedops_2.4.39+dfsg1-2_amd64.deb (main)
  • W csh-considered-harmful usr/bin/bam2bed_gnuParallel
  • W csh-considered-harmful usr/bin/bam2bed_sge
  • W csh-considered-harmful usr/bin/bam2bed_slurm
  • W csh-considered-harmful usr/bin/bam2starch_gnuParallel
  • W csh-considered-harmful usr/bin/bam2starch_sge
  • W csh-considered-harmful usr/bin/bam2starch_slurm
  • W csh-considered-harmful usr/bin/starchcluster_gnuParallel
  • W csh-considered-harmful usr/bin/starchcluster_sge
  • W csh-considered-harmful usr/bin/starchcluster_slurm
  • W no-manual-page usr/bin/bam2bed_gnuParallel
  • W no-manual-page usr/bin/bam2bed_sge
  • W no-manual-page usr/bin/bam2bed_slurm
  • W no-manual-page usr/bin/bam2starch_gnuParallel
  • W no-manual-page usr/bin/bam2starch_sge
  • W no-manual-page usr/bin/bam2starch_slurm
  • W no-manual-page usr/bin/starchcluster_gnuParallel
  • W no-manual-page usr/bin/starchcluster_sge
  • W no-manual-page usr/bin/starchcluster_slurm
  • W useless-whatis-entry usr/share/man/man1/bam2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/bam2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/bedextract.1.gz
  • W useless-whatis-entry usr/share/man/man1/bedmap.1.gz
  • W useless-whatis-entry usr/share/man/man1/bedops.1.gz
  • W useless-whatis-entry usr/share/man/man1/bedops-starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/closest-features.1.gz
  • W useless-whatis-entry usr/share/man/man1/convert2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/gff2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/gff2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/gtf2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/gtf2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/gvf2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/gvf2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/psl2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/psl2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/rmsk2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/rmsk2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/sam2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/sam2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/sort-bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/starchcat.1.gz
  • W useless-whatis-entry usr/share/man/man1/starch-diff.1.gz
  • W useless-whatis-entry usr/share/man/man1/starchstrip.1.gz
  • W useless-whatis-entry usr/share/man/man1/unstarch.1.gz
  • W useless-whatis-entry usr/share/man/man1/update-sort-bed-migrate-candidates.1.gz
  • W useless-whatis-entry usr/share/man/man1/update-sort-bed-slurm.1.gz
  • W useless-whatis-entry usr/share/man/man1/update-sort-bed-starch-slurm.1.gz
  • W useless-whatis-entry usr/share/man/man1/vcf2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/vcf2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/wig2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/wig2starch.1.gz
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/001.not-element-of.001.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/002.complement.002.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/003.intersection.003.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/004.element-of.004.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/005.symdiff.005.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/006.difference.006.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/006.union.006.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/007.difference.007.expected
• bedops-doc_2.4.39+dfsg1-2_all.deb (main)
  • W embedded-javascript-library usr/share/doc/bedops/html/_static/doctools.js please use sphinx
  • W embedded-javascript-library usr/share/doc/bedops/html/_static/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/bedops/html/_static/language_data.js please use sphinx
  • W embedded-javascript-library usr/share/doc/bedops/html/_static/searchtools.js please use sphinx
  • W embedded-javascript-library usr/share/doc/bedops/html/_static/underscore.js please use libjs-underscore
  • W privacy-breach-generic usr/share/doc/bedops/html/content/installation.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/overview.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/performance.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/placeholder.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/starchcat.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/starch-diff.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/starch.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/starch-specification.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/starchstrip.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/unstarch.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/bam2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/convert2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/gff2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/gtf2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/gvf2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/parallel_bam2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/parallel_bam2starch.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/psl2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/rmsk2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/sam2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/vcf2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/wig2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/sorting.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
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  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/set-operations/bedextract.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
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  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/set-operations/nested-elements.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/statistics/bedmap.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
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  • W privacy-breach-generic usr/share/doc/bedops/html/content/release.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
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  • W privacy-breach-generic usr/share/doc/bedops/html/content/usage-examples/snp-visualization.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/usage-examples/starchcluster.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/genindex.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/index.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/search.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
• biojava4-live 4.2.12+dfsg-3.1
• biojava4-live_4.2.12+dfsg-3.1.dsc (main)
  • W patch-file-present-but-not-mentioned-in-series fix_code_to_support_latest_jmol
  • W patch-file-present-but-not-mentioned-in-series fix_uselog4j1
  • W patch-file-present-but-not-mentioned-in-series java8_compatibility.patch
• biojava-live 1:1.7.1-9
• libbiojava-java-doc_1.7.1-9_all.deb (main)
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-3.5.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
  • W national-encoding usr/share/doc/libbiojava-java/api/org/biojava/bio/program/das/dasalignment/DASException.html
  • W national-encoding usr/share/doc/libbiojava-java/api/org/biojava/bio/structure/io/PDBParseException.html
  • W national-encoding usr/share/doc/libbiojava-java/api/org/biojava/bio/structure/StructureException.html
• libbiojava1.7-java_1.7.1-9_all.deb (main)
  • W bad-jar-name usr/share/java/biojava1.7.1.jar
• biomaj3 3.1.18-2
• python3-biomaj3_3.1.18-2_all.deb (main)
  • W executable-not-elf-or-script usr/share/doc/python3-biomaj3/examples/tools/process/formatdb.sh
  • W no-manual-page usr/bin/biomaj_migrate_database.py
  • W unknown-field Python-Egg-Name
• biomaj3-cli 3.1.11-1
• biomaj3-cli_3.1.11-1.dsc (main)
  • W debian-rules-sets-DEB_BUILD_OPTIONS (line 3)
  • W package-uses-deprecated-debhelper-compat-version 9
• python3-biomaj3-cli_3.1.11-1_all.deb (main)
  • W no-manual-page usr/bin/biomaj-cli
  • W no-manual-page usr/bin/biomaj-cli.py
  • W script-with-language-extension usr/bin/biomaj-cli.py
  • W unknown-field Python-Egg-Name
• biomaj3-core 3.0.26-1
• python3-biomaj3-core_3.0.26-1_all.deb (main)
  • W unknown-field Python-Egg-Name
• biomaj3-daemon 3.0.22-2
• python3-biomaj3-daemon_3.0.22-2_all.deb (main)
  • W no-manual-page usr/bin/biomaj-daemon-consumer
  • W no-manual-page usr/bin/biomaj_daemon_consumer.py
  • W no-manual-page usr/bin/biomaj-daemon-web
  • W unknown-field Python-Egg-Name
• biomaj3-download 3.2.4-1
• python3-biomaj3-download_3.2.4-1_all.deb (main)
  • W no-manual-page usr/bin/biomaj-download-consumer
  • W no-manual-page usr/bin/biomaj_download_consumer.py
  • W no-manual-page usr/bin/biomaj-download-web
• biomaj3-process 3.0.16-2
• biomaj3-process_3.0.16-2.dsc (main)
  • W debian-rules-sets-DEB_BUILD_OPTIONS (line 3)
• python3-biomaj3-process_3.0.16-2_all.deb (main)
  • W no-manual-page usr/bin/biomaj-process-consumer
  • W no-manual-page usr/bin/biomaj_process_consumer.py
  • W no-manual-page usr/bin/biomaj-process-web
  • W script-with-language-extension usr/bin/biomaj_process_consumer.py
  • W unknown-field Python-Egg-Name
• biomaj3-user 3.0.10-1
• python3-biomaj3-user_3.0.10-1_all.deb (main)
  • W no-manual-page usr/bin/biomaj-users
  • W no-manual-page usr/bin/biomaj-users.py
  • W no-manual-page usr/bin/biomaj-users-web
  • W unknown-field Python-Egg-Name
• biomaj3-zipkin 0.2.2-1.1
• biomaj3-zipkin_0.2.2-1.1.dsc (main)
  • W debian-rules-sets-DEB_BUILD_OPTIONS (line 3)
  • W no-nmu-in-changelog
  • W package-uses-deprecated-debhelper-compat-version 9
• python3-biomaj3-zipkin_0.2.2-1.1_all.deb (main)
  • W unknown-field Python-Egg-Name
• bio-rainbow 2.0.4+dfsg-2
• bio-rainbow_2.0.4+dfsg-2.dsc (main)
  • E unpack-message-for-orig bio-rainbow_2.0.4+dfsg.orig.tar.xz tar: Ignoring unknown extended header keyword 'LIBARCHIVE.creationtime'
  • E unpack-message-for-orig bio-rainbow_2.0.4+dfsg.orig.tar.xz tar: Ignoring unknown extended header keyword 'SCHILY.dev'
  • E unpack-message-for-orig bio-rainbow_2.0.4+dfsg.orig.tar.xz tar: Ignoring unknown extended header keyword 'SCHILY.ino'
  • E unpack-message-for-orig bio-rainbow_2.0.4+dfsg.orig.tar.xz tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
• bytecode 0.92.svn.20090106-2.1
• bytecode_0.92.svn.20090106-2.1.dsc (main)
  • W no-nmu-in-changelog
  • W package-uses-deprecated-debhelper-compat-version 9
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/pkg-java/bytecode.git
  • W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/pkg-java/bytecode.git
• libbytecode-java_0.92.svn.20090106-2.1_all.deb (main)
  • W copyright-refers-to-versionless-license-file usr/share/common-licenses/LGPL
  • W needless-dependency-on-jre
• libbytecode-java-doc_0.92.svn.20090106-2.1_all.deb (main)
  • W copyright-refers-to-versionless-license-file usr/share/common-licenses/LGPL
  • W embedded-javascript-library usr/share/doc/libbytecode-java-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libbytecode-java-doc/api/jquery/jquery-3.5.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libbytecode-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libbytecode-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libbytecode-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libbytecode-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• circos 0.69.9+dfsg-2
• circos_0.69.9+dfsg-2_all.deb (main)
  • W bad-whatis-entry usr/share/man/man1/circos.1.gz
• fonts-circos-symbols_0.69.9+dfsg-2_all.deb (main)
  • W opentype-font-prohibits-installable-embedding [edit only] usr/share/circos/fonts/symbols/circossymbols.otf
• cnvkit 0.9.8-1
• cnvkit_0.9.8-1_amd64.deb (main)
  • W breakout-link usr/lib/debian-med/bin/cnvkit.py -> usr/bin/cnvkit
  • W groff-message usr/share/man/man1/cnvkit.1.gz (line 1) 8: warning [p 1, 1.7i]: cannot adjust line
  • W groff-message usr/share/man/man1/cnvkit.1.gz (line 2) 8: warning [p 1, 1.8i]: cannot adjust line
  • W groff-message usr/share/man/man1/cnvkit.1.gz (line 3) 14: warning [p 1, 2.8i, div 'an-div', 0.0i]: cannot adjust line
  • W groff-message usr/share/man/man1/cnvkit.1.gz (line 4) 14: warning [p 1, 2.8i, div 'an-div', 0.2i]: cannot adjust line
  • W no-manual-page usr/bin/cnvkit-cnv_annotate
  • W no-manual-page usr/bin/cnvkit-cnv_expression_correlate
  • W no-manual-page usr/bin/cnvkit-cnv_updater
  • W no-manual-page usr/bin/cnvkit-guess_baits
  • W no-manual-page usr/bin/cnvkit-skg_convert
  • W no-manual-page usr/bin/snpfilter.sh
  • W script-with-language-extension usr/bin/snpfilter.sh
• discosnp 4.4.4-1
• discosnp_4.4.4-1_amd64.deb (main)
  • W executable-not-elf-or-script usr/share/discosnp/scripts/from_phased_alleles_to_clusters.sh
  • W executable-not-elf-or-script usr/share/discosnp/scripts/k3000/run.sh
  • W no-manual-page usr/bin/create_coverage_h5_file
  • W no-manual-page usr/bin/run_discoSnp++_ML.sh
  • W no-manual-page usr/bin/run_discoSnp++_storagefile.sh
  • W script-not-executable usr/share/discosnp/discoSnpRAD/post-processing_scripts/vcf2structure.sh
  • W script-not-executable usr/share/discosnp/scripts/simulations/multiple_samples_simulator.sh
• figtree 1.4.4-5
• figtree_1.4.4-5_all.deb (main)
  • W bad-jar-name usr/share/java/figtree.jar
• fonts-cmu 0.7.0-5
• fonts-cmu_0.7.0-5.dsc (main)
  • E duplicate-globbing-patterns debian/copyright *bbx.ttf in lines 16 58 91 112
  • E duplicate-globbing-patterns debian/copyright *bi.ttf in lines 16 58
  • E duplicate-globbing-patterns debian/copyright *bl.ttf in lines 16 58 91
  • E duplicate-globbing-patterns debian/copyright *bmo.ttf in lines 16 58 91 112
  • E duplicate-globbing-patterns debian/copyright *brm.ttf in lines 16 58 91 112
  • E duplicate-globbing-patterns debian/copyright *bso.ttf in lines 16 58 91 112
  • E duplicate-globbing-patterns debian/copyright *bsr.ttf in lines 16 58 91 112
  • E duplicate-globbing-patterns debian/copyright *btl.ttf in lines 16 58
  • E duplicate-globbing-patterns debian/copyright *bto.ttf in lines 16 58
  • E duplicate-globbing-patterns debian/copyright *bxo.ttf in lines 16 58 91 112
  • E duplicate-globbing-patterns debian/copyright *bx.ttf in lines 16 58 91
  • E duplicate-globbing-patterns debian/copyright *ci.ttf in lines 16 58
  • E duplicate-globbing-patterns debian/copyright *it.ttf in lines 16 58
  • E duplicate-globbing-patterns debian/copyright *obi.ttf in lines 9 16 58
  • E duplicate-globbing-patterns debian/copyright *obx.ttf in lines 9 16 58 91
  • E duplicate-globbing-patterns debian/copyright *orm.ttf in lines 9 16 58 91
  • E duplicate-globbing-patterns debian/copyright *oti.ttf in lines 9 16 58
  • E duplicate-globbing-patterns debian/copyright *rb.ttf in lines 16 91
  • E duplicate-globbing-patterns debian/copyright *rm.ttf in lines 16 58 91
  • E duplicate-globbing-patterns debian/copyright *si.ttf in lines 16 58 91
  • E duplicate-globbing-patterns debian/copyright *sl.ttf in lines 16 58
  • E duplicate-globbing-patterns debian/copyright *so.ttf in lines 16 58
  • E duplicate-globbing-patterns debian/copyright *ssdc.ttf in lines 16 58
  • E duplicate-globbing-patterns debian/copyright *ss.ttf in lines 16 58 91
  • E duplicate-globbing-patterns debian/copyright *st.ttf in lines 16 58 91
  • E duplicate-globbing-patterns debian/copyright *sx.ttf in lines 16 58 91
  • E duplicate-globbing-patterns debian/copyright *tb.ttf in lines 16 58
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  • E duplicate-globbing-patterns debian/copyright *tx.ttf in lines 16 58
  • E duplicate-globbing-patterns debian/copyright *ui.ttf in lines 16 58
• gatk-native-bindings 1.0.0-2.1
• gatk-native-bindings_1.0.0-2.1.dsc (main)
  • W no-nmu-in-changelog
• gbrowse 2.56+dfsg-8
• gbrowse_2.56+dfsg-8.dsc (main)
  • E duplicate-globbing-patterns debian/copyright bin/process_ncbi_human.pl in lines 39 39
• gbrowse_2.56+dfsg-8_all.deb (main)
  • W bad-whatis-entry usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm.gz
  • W bad-whatis-entry usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::Status.3pm.gz
  • W missing-systemd-service-for-init.d-script gbrowse-aws-balancer
  • W missing-systemd-service-for-init.d-script gbrowse-slave
  • W national-encoding etc/gbrowse/languages/fr.pm
  • W national-encoding etc/gbrowse/languages/is.pm
  • W national-encoding etc/gbrowse/languages/it.pm
  • W national-encoding etc/gbrowse/languages/ja.pm
  • W national-encoding etc/gbrowse/languages/ko.pm
  • W national-encoding etc/gbrowse/languages/nl.pm
  • W no-manual-page usr/bin/gbrowse_configure_slaves
  • W recursive-privilege-change postinst:11
  • W recursive-privilege-change postinst:12
  • W recursive-privilege-change postinst:13
  • W recursive-privilege-change postinst:14
  • W recursive-privilege-change postinst:16
  • W script-not-executable etc/default/gbrowse-aws-balancer
  • W script-not-executable etc/default/gbrowse-slave
• gbrowse-data_2.56+dfsg-8_all.deb (main)
  • W recursive-privilege-change postinst:7
  • W recursive-privilege-change postinst:8
• gkl 0.8.7+dfsg-1
• libgkl-jni_0.8.7+dfsg-1_amd64.deb (main)
  • E library-not-linked-against-libc usr/lib/jni/libgkl_utils.so
• htsjdk 2.23.0+dfsg-2
• htsjdk_2.23.0+dfsg-2.dsc (main)
  • W patch-file-present-but-not-mentioned-in-series 50-fix-javadoc
• libhtsjdk-java-doc_2.23.0+dfsg-2_all.deb (main)
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• libbio-graphics-perl 2.40-6
• libbio-graphics-perl_2.40-6_all.deb (main)
  • W bad-whatis-entry usr/share/man/man3/Bio::Graphics::Glyph::fb_shmiggle.3pm.gz
  • W bad-whatis-entry usr/share/man/man3/Bio::Graphics::Wiggle::Loader.3pm.gz
  • W groff-message usr/share/man/man3/Bio::Graphics::Glyph::hybrid_plot.3pm.gz (line 1) 165: warning [p 1, 4.8i]: can't break line
  • W groff-message usr/share/man/man3/Bio::Graphics::Glyph::ideogram.3pm.gz (line 1) 313: warning [p 3, 1.8i]: can't break line
  • W no-manual-page usr/bin/bam_coverage_windows
  • W no-manual-page usr/bin/coverage_to_topoview
  • W no-manual-page usr/bin/glyph_help
  • W no-manual-page usr/bin/render_msa
  • W pod-conversion-message usr/share/man/man3/Bio::Graphics::FeatureDir.3pm.gz:226
• libchado-perl 1.31-6
• libchado-perl_1.31-6.dsc (main)
  • W tab-in-license-text debian/copyright (starting at line 56)
• libchado-perl_1.31-6_all.deb (main)
  • E malformed-override Unknown tag package-contains-upstream-install-documentation in line 1
• libclass-autoloadcan-perl 0.03-2.1
• libclass-autoloadcan-perl_0.03-2.1.dsc (main)
  • W no-nmu-in-changelog
  • W package-uses-deprecated-debhelper-compat-version 9
  • W team/pkg-perl/vcs/no-team-url Vcs-Browser https://anonscm.debian.org/cgit/pkg-perl/packages/libclass-autoloadcan-perl.git
  • W team/pkg-perl/vcs/no-team-url Vcs-Git git://anonscm.debian.org/pkg-perl/packages/libclass-autoloadcan-perl.git
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/pkg-perl/packages/libclass-autoloadcan-perl.git
  • W vcs-obsolete-in-debian-infrastructure Git git://anonscm.debian.org/pkg-perl/packages/libclass-autoloadcan-perl.git
• libdbix-class-tree-nestedset-perl 0.10-1.1
• libdbix-class-tree-nestedset-perl_0.10-1.1.dsc (main)
  • W no-nmu-in-changelog
  • W obsolete-url-in-packaging debian/control http://search.cpan.org/dist/DBIx-Class-Tree-NestedSet/
  • W obsolete-url-in-packaging debian/copyright http://search.cpan.org/dist/DBIx-Class-Tree-NestedSet/
  • W obsolete-url-in-packaging debian/watch http://search.cpan.org/dist/DBIx-Class-Tree-NestedSet/
  • W package-uses-deprecated-debhelper-compat-version 8
  • W team/pkg-perl/testsuite/no-testsuite-header
  • W team/pkg-perl/vcs/no-team-url Vcs-Browser http://anonscm.debian.org/gitweb/?p=pkg-perl/packages/libdbix-class-tree-nestedset-perl.git
  • W team/pkg-perl/vcs/no-team-url Vcs-Git git://git.debian.org/pkg-perl/packages/libdbix-class-tree-nestedset-perl.git
  • W vcs-obsolete-in-debian-infrastructure Browser http://anonscm.debian.org/gitweb/?p=pkg-perl/packages/libdbix-class-tree-nestedset-perl.git
  • W vcs-obsolete-in-debian-infrastructure Git git://git.debian.org/pkg-perl/packages/libdbix-class-tree-nestedset-perl.git
• libdbix-dbstag-perl 0.12-2
• libdbix-dbstag-perl_0.12-2.dsc (main)
  • W package-uses-deprecated-debhelper-compat-version 9
  • W team/pkg-perl/vcs/no-team-url Vcs-Browser https://anonscm.debian.org/cgit/pkg-perl/packages/libdbix-dbstag-perl.git
  • W team/pkg-perl/vcs/no-team-url Vcs-Git https://anonscm.debian.org/git/pkg-perl/packages/libdbix-dbstag-perl.git
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/pkg-perl/packages/libdbix-dbstag-perl.git
  • W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/pkg-perl/packages/libdbix-dbstag-perl.git
• libgetopt-complete-perl 0.26-2.1
• libgetopt-complete-perl_0.26-2.1.dsc (main)
  • W no-nmu-in-changelog
  • W package-uses-deprecated-debhelper-compat-version 9
  • W team/pkg-perl/vcs/no-team-url Vcs-Browser https://anonscm.debian.org/cgit/pkg-perl/packages/libgetopt-complete-perl.git
  • W team/pkg-perl/vcs/no-team-url Vcs-Git git://anonscm.debian.org/pkg-perl/packages/libgetopt-complete-perl.git
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/pkg-perl/packages/libgetopt-complete-perl.git
  • W vcs-obsolete-in-debian-infrastructure Git git://anonscm.debian.org/pkg-perl/packages/libgetopt-complete-perl.git
• libjung-free-java 2.0.1+dfsg-1.1
• libjung-free-java_2.0.1+dfsg-1.1.dsc (main)
  • W no-nmu-in-changelog
  • W package-uses-deprecated-debhelper-compat-version 9
  • W patch-file-present-but-not-mentioned-in-series use-apache-commons-collections
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/debian-med/libjung-java.git
  • W vcs-obsolete-in-debian-infrastructure Git git://anonscm.debian.org/debian-med/libjung-java.git
• libjung-free-java-doc_2.0.1+dfsg-1.1_all.deb (main)
  • E doc-base-file-references-wrong-path libjung-free-java-doc:8 //usr/share/doc/libjung-free-java/api
  • E doc-base-file-references-wrong-path libjung-free-java-doc:9 //usr/share/doc/libjung-free-java/api/*.html
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/jquery-3.5.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• libsis-base-java 18.09~pre1+git20180928.45fbd31+dfsg-3
• libsis-base-jni_18.09~pre1+git20180928.45fbd31+dfsg-3_amd64.deb (main)
  • W package-has-unnecessary-activation-of-ldconfig-trigger
• libtest-fork-perl 0.02-2.1
• libtest-fork-perl_0.02-2.1.dsc (main)
  • W no-nmu-in-changelog
  • W package-uses-deprecated-debhelper-compat-version 8
  • W team/pkg-perl/vcs/no-team-url Vcs-Browser https://anonscm.debian.org/cgit/pkg-perl/packages/libtest-fork-perl.git
  • W team/pkg-perl/vcs/no-team-url Vcs-Git git://anonscm.debian.org/pkg-perl/packages/libtest-fork-perl.git
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/pkg-perl/packages/libtest-fork-perl.git
  • W vcs-obsolete-in-debian-infrastructure Git git://anonscm.debian.org/pkg-perl/packages/libtest-fork-perl.git
• libvm-ec2-perl 1.28-2
• libvm-ec2-perl_1.28-2.dsc (main)
  • W package-uses-deprecated-debhelper-compat-version 9
  • W team/pkg-perl/vcs/no-team-url Vcs-Browser https://anonscm.debian.org/cgit/pkg-perl/packages/libvm-ec2-perl.git
  • W team/pkg-perl/vcs/no-team-url Vcs-Git https://anonscm.debian.org/git/pkg-perl/packages/libvm-ec2-perl.git
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/pkg-perl/packages/libvm-ec2-perl.git
  • W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/pkg-perl/packages/libvm-ec2-perl.git
• libvm-ec2-perl_1.28-2_all.deb (main)
  • W groff-message usr/share/man/man3/VM::EC2::ELB.3pm.gz (line 1) 303: warning [p 3, 1.8i]: can't break line
  • W groff-message usr/share/man/man3/VM::EC2::ELB.3pm.gz (line 2) 317: warning [p 3, 4.2i]: can't break line
  • W groff-message usr/share/man/man3/VM::EC2::REST::ebs.3pm.gz (line 1) 194: warning [p 1, 8.3i]: can't break line
• libzstd 1.4.8+dfsg-2.1
• libzstd_1.4.8+dfsg-2.1.dsc (main)
  • W mismatched-override binary-control-field-duplicates-source field "section" in package libzstd1
• ncbi-blast+ 2.11.0+ds-1
• ncbi-blast+_2.11.0+ds-1_amd64.deb (main)
  • W incorrect-path-for-interpreter usr/bin/legacy_blast (#!/usr/bin/env perl != /usr/bin/perl)
  • W no-manual-page usr/bin/blastdb_aliastool
  • W no-manual-page usr/bin/blastdbcheck
  • W no-manual-page usr/bin/blastdbcmd
  • W no-manual-page usr/bin/blastdb_convert
  • W no-manual-page usr/bin/blastdbcp
  • W no-manual-page usr/bin/blastdb_path
  • W no-manual-page usr/bin/blast_formatter
  • W no-manual-page usr/bin/blastn
  • W no-manual-page usr/bin/blastp
  • W no-manual-page usr/bin/blast_report
  • W no-manual-page usr/bin/blastx
  • W no-manual-page usr/bin/cleanup-blastdb-volumes
  • W no-manual-page usr/bin/convert2blastmask
  • W no-manual-page usr/bin/deltablast
  • W no-manual-page usr/bin/dustmasker
  • W no-manual-page usr/bin/gene_info_reader
  • W no-manual-page usr/bin/get_species_taxids
  • W no-manual-page usr/bin/legacy_blast
  • W no-manual-page usr/bin/makeblastdb
  • W no-manual-page usr/bin/makembindex
  • W no-manual-page usr/bin/makeprofiledb
  • W no-manual-page usr/bin/psiblast
  • W no-manual-page usr/bin/rpsblast+
  • W no-manual-page usr/bin/rpstblastn
  • W no-manual-page usr/bin/seedtop+
  • W no-manual-page usr/bin/segmasker
  • W no-manual-page usr/bin/seqdb_perf
  • W no-manual-page usr/bin/tblastn
  • W no-manual-page usr/bin/tblastx
  • W no-manual-page usr/bin/update_blastdb
  • W no-manual-page usr/bin/windowmasker
  • W no-manual-page usr/bin/windowmasker_2.2.22_adapter
• ncbi-blast+-legacy_2.11.0+ds-1_all.deb (main)
  • W no-manual-page usr/bin/bl2seq
  • W no-manual-page usr/bin/blastall
  • W no-manual-page usr/bin/blastpgp
  • W no-manual-page usr/bin/fastacmd
  • W no-manual-page usr/bin/formatdb
  • W no-manual-page usr/bin/megablast
  • W no-manual-page usr/bin/rpsblast
  • W no-manual-page usr/bin/seedtop
• netlib-java 0.9.3-7
• netlib-java_0.9.3-7.dsc (main)
  • E duplicate-globbing-patterns debian/copyright src/org/netlib/generate/JNIGenerator.java in lines 11 11
  • W unnecessary-team-upload
• libnetlib-java_0.9.3-7_all.deb (main)
  • W embedded-javascript-library usr/share/doc/libnetlib-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libnetlib-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libnetlib-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libnetlib-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libnetlib-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libnetlib-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• obitools 1.2.13+dfsg-3
• obitools_1.2.13+dfsg-3.dsc (main)
  • W pypi-homepage https://pypi.python.org/pypi/OBITools
• obitools_1.2.13+dfsg-3+b1_amd64.deb (main)
  • W no-manual-page usr/bin/ali2consensus
  • W no-manual-page usr/bin/ecodbtaxstat
  • W no-manual-page usr/bin/ecotag
  • W no-manual-page usr/bin/ecotaxspecificity
  • W no-manual-page usr/bin/ecotaxstat
  • W no-manual-page usr/bin/extractreads
  • W no-manual-page usr/bin/extractreads2
  • W no-manual-page usr/bin/illuminapairedend
  • W no-manual-page usr/bin/ngsfilter
  • W no-manual-page usr/bin/obiaddtaxids
  • W no-manual-page usr/bin/obiannotate
  • W no-manual-page usr/bin/obiclean
  • W no-manual-page usr/bin/obicomplement
  • W no-manual-page usr/bin/obiconvert
  • W no-manual-page usr/bin/obicount
  • W no-manual-page usr/bin/obicut
  • W no-manual-page usr/bin/obidistribute
  • W no-manual-page usr/bin/obiextract
  • W no-manual-page usr/bin/obigrep
  • W no-manual-page usr/bin/obihead
  • W no-manual-page usr/bin/obijoinpairedend
  • W no-manual-page usr/bin/obipr2
  • W no-manual-page usr/bin/obisample
  • W no-manual-page usr/bin/obiselect
  • W no-manual-page usr/bin/obisilva
  • W no-manual-page usr/bin/obisort
  • W no-manual-page usr/bin/obisplit
  • W no-manual-page usr/bin/obistat
  • W no-manual-page usr/bin/obisubset
  • W no-manual-page usr/bin/obitab
  • W no-manual-page usr/bin/obitail
  • W no-manual-page usr/bin/obitaxonomy
  • W no-manual-page usr/bin/obiuniq
  • W no-manual-page usr/bin/oligotag
• opennebula-context 4.14.0-1
• opennebula-context_4.14.0-1.dsc (main)
  • W package-uses-deprecated-debhelper-compat-version 9
  • W vcs-obsolete-in-debian-infrastructure Browser http://anonscm.debian.org/cgit/pkg-opennebula/opennebula-context.git
  • W vcs-obsolete-in-debian-infrastructure Git git://anonscm.debian.org/pkg-opennebula/opennebula-context.git
• opennebula-context_4.14.0-1_all.deb (main)
  • E init.d-script-needs-depends-on-lsb-base etc/init.d/vmcontext (line 33)
  • E malformed-override Unknown tag init.d-script-does-not-implement-optional-option in line 3
  • E ruby-script-but-no-ruby-dep usr/bin/onegate.rb ruby
  • W missing-systemd-service-for-init.d-script vmcontext
  • W no-manual-page usr/bin/onegate
  • W no-manual-page usr/bin/onegate.rb
  • W priority-extra-is-replaced-by-priority-optional
  • W ruby-interpreter-is-deprecated ruby | ruby-interpreter
  • W script-with-language-extension usr/bin/onegate.rb
• pbsuite 15.8.24+dfsg-7
• pbsuite_15.8.24+dfsg-7.dsc (main)
  • W obsolete-runtime-tests-restriction needs-recommends in line 3
  • W uses-deprecated-adttmp debian/tests/pbhoney (line 7)
  • W uses-deprecated-adttmp debian/tests/pbhoney (line 9)
• pbhoney_15.8.24+dfsg-7_all.deb (main)
  • W executable-not-elf-or-script usr/share/doc/pbhoney/examples/lambda_reference.fasta
• picard-tools 2.24.1+dfsg-1
• libpicard-java-doc_2.24.1+dfsg-1_all.deb (main)
  • W embedded-javascript-library usr/share/doc/libpicard-java/api/jquery/jquery-3.5.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libpicard-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libpicard-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libpicard-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libpicard-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• python-consul 0.7.1-1.1
• python-consul_0.7.1-1.1.dsc (main)
  • E old-dpmt-vcs Browser
  • E old-dpmt-vcs Git
  • E python-teams-merged Debian Python Modules Team <python-modules-team@lists.alioth.debian.org>
  • W no-nmu-in-changelog
  • W package-uses-deprecated-debhelper-compat-version 9
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/python-modules/python-consul.git
  • W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/python-modules/python-consul.git
• python3-consul_0.7.1-1.1_all.deb (main)
  • W unknown-field Python-Egg-Name
• python-cutadapt 3.4-1
• python-cutadapt_3.4-1.dsc (main)
  • W pypi-homepage https://pypi.python.org/pypi/cutadapt
• python-dictobj 0.4-4
• python-dictobj_0.4-4.dsc (main)
  • E old-dpmt-vcs Browser
  • E old-dpmt-vcs Git
  • E python-teams-merged Debian Python Modules Team <python-modules-team@lists.alioth.debian.org>
  • W pypi-homepage http://pypi.python.org/pypi/dictobj
• python-easydev 0.10.1+dfsg-1
• python3-easydev_0.10.1+dfsg-1_all.deb (main)
  • W no-manual-page usr/bin/easydev3_browse
  • W no-manual-page usr/bin/easydev3_buildPackage
• python-ftputil 3.4-3
• python-ftputil_3.4-3.dsc (main)
  • E old-dpmt-vcs Browser
  • E old-dpmt-vcs Git
  • E python-teams-merged Debian Python Modules Team <python-modules-team@lists.alioth.debian.org>
  • W package-uses-deprecated-debhelper-compat-version 9
  • W patch-file-present-but-not-mentioned-in-series 0002-Skip-test-that-fail-on-Debian.patch
• python3-ftputil_3.4-3_all.deb (main)
  • W unknown-field Python-Egg-Name
• python-irodsclient 0.8.1-2
• python-irodsclient_0.8.1-2.dsc (main)
  • E old-dpmt-vcs Browser
  • E old-dpmt-vcs Git
  • E python-teams-merged Debian Python Modules Team <python-modules-team@lists.alioth.debian.org>
• python3-irodsclient_0.8.1-2_all.deb (main)
  • W unknown-field Python-Egg-Name
• python-py-zipkin 0.15.0-1.1
• python-py-zipkin_0.15.0-1.1.dsc (main)
  • E old-dpmt-vcs Browser
  • E old-dpmt-vcs Git
  • E python-teams-merged Debian Python Modules Team <python-modules-team@lists.alioth.debian.org>
  • W global-files-wildcard-not-first-paragraph-in-dep5-copyright debian/copyright (line 10)
  • W globbing-patterns-out-of-order debian/copyright py_zipkin/thrift/zipkinCore.thrift * py_zipkin/thrift/zipkinCore.thrift
  • W no-nmu-in-changelog
  • W package-uses-deprecated-debhelper-compat-version 9
• python3-py-zipkin_0.15.0-1.1_all.deb (main)
  • W unknown-field Python-Egg-Name
• python-thriftpy 0.3.9+ds1-1
• python-thriftpy_0.3.9+ds1-1.dsc (main)
  • E old-dpmt-vcs Browser
  • E old-dpmt-vcs Git
  • E python-teams-merged Debian Python Modules Team <python-modules-team@lists.alioth.debian.org>
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/python-modules/python-thriftpy.git
  • W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/python-modules/python-thriftpy.git
• rdp-classifier 2.10.2-5
• rdp-classifier-doc_2.10.2-5_all.deb (main)
  • W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/jquery-3.5.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
  • W executable-not-elf-or-script usr/share/doc/rdp-classifier/examples/samplefiles/new_trainset_db_taxid.txt
• ruby-cassiopee 0.1.13-1
• ruby-cassiopee_0.1.13-1.dsc (main)
  • W package-uses-deprecated-debhelper-compat-version 9
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/pkg-ruby-extras/ruby-cassiopee.git
  • W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/pkg-ruby-extras/ruby-cassiopee.git
• ruby-cassiopee_0.1.13-1_all.deb (main)
  • E ruby-script-but-no-ruby-dep usr/bin/cassie /usr/bin/ruby
  • W ruby-interpreter-is-deprecated ruby | ruby-interpreter
• ruby-text 1.3.0-1.1
• ruby-text_1.3.0-1.1.dsc (main)
  • W no-nmu-in-changelog
  • W package-uses-deprecated-debhelper-compat-version 7
  • W vcs-obsolete-in-debian-infrastructure Browser http://anonscm.debian.org/gitweb?p=pkg-ruby-extras/ruby-text.git;a=summary
  • W vcs-obsolete-in-debian-infrastructure Git git://anonscm.debian.org/pkg-ruby-extras/ruby-text.git
• ruby-text_1.3.0-1.1_all.deb (main)
  • W ruby-interpreter-is-deprecated ruby | ruby-interpreter
• ugene 34.0+dfsg-2
• ugene_34.0+dfsg-2.dsc (non-free)
  • W globbing-patterns-out-of-order debian/copyright src/plugins_3rdparty/hmm2/src/hmmer2/sre_string.cpp src/plugins_3rdparty/hmm2/* src/plugins_3rdparty/hmm2/src/hmmer2/sre_string.cpp
• ugene_34.0+dfsg-2_amd64.deb (non-free)
  • W package-has-unnecessary-activation-of-ldconfig-trigger
• ugene-data_34.0+dfsg-2_all.deb (non-free)
  • W unusual-interpreter usr/share/ugene/data/snp_scripts/rsnp.py python
• vienna-rna 2.4.17+dfsg-2
• vienna-rna_2.4.17+dfsg-2.dsc (non-free)
  • W patch-file-present-but-not-mentioned-in-series add_shared_library
• python3-rna_2.4.17+dfsg-2_amd64.deb (non-free)
  • W package-has-unnecessary-activation-of-ldconfig-trigger
• vienna-rna_2.4.17+dfsg-2_amd64.deb (non-free)
  • W groff-message usr/share/man/man1/RNAup.1.gz (line 1) 316: warning: macro 'RD' not defined
  • W mismatched-override groff-message usr/share/man/man1/AnalyseDists.1.gz 2: warning: macro `ER' not defined
  • W mismatched-override groff-message usr/share/man/man1/AnalyseSeqs.1.gz 2: warning: macro `ER' not defined
  • W mismatched-override groff-message usr/share/man/man1/RNAup.1.gz 140: warning [p 3, 1.0i]: can't break line
  • W useless-whatis-entry usr/share/man/man1/ct2db.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNA2Dfold.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAaliduplex.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAalifold.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAcofold.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAdistance.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAdos.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAduplex.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAeval.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAfold.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAheat.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAinverse.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNALalifold.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNALfold.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAlocmin.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNApaln.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAparconv.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNApdist.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAPKplex.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAplex.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAplfold.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAplot.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNApvmin.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAsnoop.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAsubopt.1.gz
  • W useless-whatis-entry usr/share/man/man1/RNAup.1.gz
• visp 3.4.0-4
• visp_3.4.0-4.dsc (main)
  • W debian-rules-sets-DEB_BUILD_OPTIONS (line 22)
• libvisp-doc_3.4.0-4_all.deb (main)
  • W mismatched-override privacy-breach-generic usr/share/doc/libvisp-doc/html/*