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Kevin Murray

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Found 66 issues in 9 maintained sources. To see all packaging hints, please click on the source.

• adapterremoval 2.3.2-1
• adapterremoval_2.3.2-1.dsc (main)
  • superfluous-file-pattern benchmark/* [debian/copyright:10]
• adapterremoval_2.3.2-1_amd64.deb (main)
  • privacy-breach-generic [<img src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" alt="coveralls" title="" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg) [usr/share/doc/adapterremoval/README.html]
  • privacy-breach-generic [<img src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" alt="travis" title="" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg) [usr/share/doc/adapterremoval/README.html]
• axe-demultiplexer 0.3.3+dfsg-3
• axe-demultiplexer_0.3.3+dfsg-3+b1_amd64.deb (main)
  • package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/fake_0mm_R1.fq.gz]
  • package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/fake_1mm_R1.fq.gz]
  • package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/fake_2mm_R1.fq.gz]
  • package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/gbs_R1.fastq.gz]
  • package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/gbs_R2.fastq.gz]
  • package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/pare.fq.gz]
  • package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/pare_full.fq.gz]
• khmer 2.1.2+dfsg-10
• khmer_2.1.2+dfsg-10.dsc (main)
  • inconsistent-appstream-metadata-license debian/khmer.metainfo.xml (mit != bsd-3-clause) [debian/copyright]
• khmer_2.1.2+dfsg-10_amd64.deb (main)
  • broken-bz2 [usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.truncated.bz2]
  • broken-bz2 [usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa.bz2]
  • broken-gz [usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.truncated.gz]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.bz2 [usr/share/lintian/overrides/khmer:3]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.gz [usr/share/lintian/overrides/khmer:4]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k12.ht.gz [usr/share/lintian/overrides/khmer:5]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.bz2 [usr/share/lintian/overrides/khmer:6]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.gz [usr/share/lintian/overrides/khmer:7]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.bz2 [usr/share/lintian/overrides/khmer:8]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.gz [usr/share/lintian/overrides/khmer:9]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.bz2 [usr/share/lintian/overrides/khmer:10]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.gz [usr/share/lintian/overrides/khmer:11]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa.bz2 [usr/share/lintian/overrides/khmer:12]
• libqes 0.2.8+ds-1
• libqes_0.2.8+ds-1.dsc (main)
  • superfluous-file-pattern src/crc.* [debian/copyright:11]
• libzstd 1.4.8+dfsg-3
• libzstd_1.4.8+dfsg-3.dsc (main)
  • mismatched-override binary-control-field-duplicates-source field "section" in package libzstd1 [debian/source/lintian-overrides:1]
• python-cutadapt 3.5-1
• python-cutadapt_3.5-1.dsc (main)
  • declare-python-versions-for-test py3versions -r [debian/tests/run-unit-test:5]
  • pypi-homepage https://pypi.python.org/pypi/cutadapt
  • test-leaves-python-version-untested [debian/tests/run-unit-test]
• python-skbio 0.5.6-6
• python-skbio-doc_0.5.6-6_all.deb (main)
  • embedded-javascript-library please use libjs-bootstrap [usr/share/doc/python-skbio-doc/html/_static/bootstrap-2.3.2/js/bootstrap.js]
  • embedded-javascript-library please use libjs-bootstrap [usr/share/doc/python-skbio-doc/html/_static/bootstrap-3.4.1/js/bootstrap.js]
  • embedded-javascript-library please use libjs-jquery [usr/share/doc/python-skbio-doc/html/_static/js/jquery-1.12.4.min.js]
• python3-skbio_0.5.6-6_amd64.deb (main)
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/skbio/io/tests/data/big5_file.bz2 [usr/share/lintian/overrides/python3-skbio:1]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/skbio/io/tests/data/big5_file.gz [usr/share/lintian/overrides/python3-skbio:2]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/skbio/io/tests/data/example_file.bz2 [usr/share/lintian/overrides/python3-skbio:3]
  • mismatched-override compressed-duplicate usr/lib/python3/dist-packages/skbio/io/tests/data/example_file.gz [usr/share/lintian/overrides/python3-skbio:4]
  • mismatched-override package-contains-documentation-outside-usr-share-doc usr/lib/python3/dist-packages/skbio/*/tests/data/* [usr/share/lintian/overrides/python3-skbio:5]
  • national-encoding [usr/lib/python3/dist-packages/skbio/io/tests/data/big5_file]
• salmon 1.6.0+ds1-1
• salmon_1.6.0+ds1-1.dsc (main)
  • source-is-missing [debian/external/pufferfish/include/cereal/external/rapidxml/manual.html]
• snakemake 6.12.3-1
• snakemake_6.12.3-1.dsc (main)
  • source-is-missing [tests/test_issue635/expected-results/report.html]
  • source-is-missing [tests/test_module_report/expected-results/report.html]
  • source-is-missing [tests/test_report/expected-results/report.html]
  • mismatched-override source-is-missing tests/test_module_report/expected-results/report.html [debian/source/lintian-overrides:3]
  • mismatched-override source-is-missing tests/test_report/expected-results/report.html [debian/source/lintian-overrides:2]
  • mismatched-override very-long-line-length-in-source-file docs/executing/cluster.rst * [debian/source/lintian-overrides:8]
  • mismatched-override very-long-line-length-in-source-file docs/project_info/faq.rst * [debian/source/lintian-overrides:9]
  • mismatched-override very-long-line-length-in-source-file docs/snakefiles/deployment.rst * [debian/source/lintian-overrides:10]
  • mismatched-override very-long-line-length-in-source-file docs/snakefiles/remote_files.rst * [debian/source/lintian-overrides:11]
  • mismatched-override very-long-line-length-in-source-file docs/snakefiles/rules.rst * [debian/source/lintian-overrides:12]
  • mismatched-override very-long-line-length-in-source-file docs/tutorial/advanced.rst * [debian/source/lintian-overrides:13]
  • mismatched-override very-long-line-length-in-source-file tests/test_*/expected-results/* * [debian/source/lintian-overrides:16]
  • mismatched-override very-long-line-length-in-source-file tests/test_*report*/custom-stylesheet.css * [debian/source/lintian-overrides:18]
  • mismatched-override very-long-line-length-in-source-file tests/test_*report*/test.csv * [debian/source/lintian-overrides:17]
  • mismatched-override very-long-line-length-in-source-file tests/test_*/.snakemake/metadata/* * [debian/source/lintian-overrides:15]
  • mismatched-override very-long-line-length-in-source-file tests/tests.py * [debian/source/lintian-overrides:14]
• snakemake_6.12.3-1_all.deb (main)
  • privacy-breach-uses-embedded-file You may use the libjs-bootstrap package. (https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.1.1/css/bootstrap.min.css) [usr/lib/python3/dist-packages/snakemake/gui.html]
  • privacy-breach-uses-embedded-file You may use the libjs-jquery package. (https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.1/jquery.min.js) [usr/lib/python3/dist-packages/snakemake/gui.html]
  • mismatched-override extra-license-file usr/share/doc/snakemake/html/_sources/project_info/license.rst.txt [usr/share/lintian/overrides/snakemake:2]
  • mismatched-override no-manual-page usr/bin/snakemake-bash-completion [usr/share/lintian/overrides/snakemake:1]
  • no-manual-page [usr/bin/snakemake-bash-completion]
  • package-contains-vcs-control-file [usr/share/doc/snakemake/tests/test_remote_irods/.gitignore]
  • privacy-breach-generic [<link rel="stylesheet" type="text/css" href="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-select/1.5.4/bootstrap-select.min.css"/>] (https://cdnjs.cloudflare.com/ajax/libs/bootstrap-select/1.5.4/bootstrap-select.min.css) [usr/lib/python3/dist-packages/snakemake/gui.html]
  • privacy-breach-generic [<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-select/1.5.4/bootstrap-select.min.js">] (https://cdnjs.cloudflare.com/ajax/libs/bootstrap-select/1.5.4/bootstrap-select.min.js) [usr/lib/python3/dist-packages/snakemake/gui.html]
  • privacy-breach-generic [<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.4.6/d3.min.js">] (https://cdnjs.cloudflare.com/ajax/libs/d3/3.4.6/d3.min.js) [usr/lib/python3/dist-packages/snakemake/gui.html]
  • privacy-breach-generic [<script type="text/javascript" src="https://cpettitt.github.io/project/dagre-d3/v0.1.5/dagre-d3.js">] (https://cpettitt.github.io/project/dagre-d3/v0.1.5/dagre-d3.js) [usr/lib/python3/dist-packages/snakemake/gui.html]
  • script-not-executable [usr/lib/python3/dist-packages/snakemake/executors/jobscript.sh]