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Found 4380 issues in 358 maintained sources. To see all packaging hints, please click on the source.

• abyss 2.2.5+dfsg-1
• abyss_2.2.5+dfsg-1_amd64.deb (main)
  • W privacy-breach-generic usr/share/doc/abyss/README.html [<img src="https://img.shields.io/conda/dn/bioconda/abyss?label=conda" alt="conda" />] (https://img.shields.io/conda/dn/bioconda/abyss?label=conda)
  • W privacy-breach-generic usr/share/doc/abyss/README.html [<img src="https://img.shields.io/github/downloads/bcgsc/abyss/total?logo=github" alt="downloads" />] (https://img.shields.io/github/downloads/bcgsc/abyss/total?logo=github)
  • W privacy-breach-generic usr/share/doc/abyss/README.html [<img src="https://img.shields.io/github/issues/bcgsc/abyss.svg" alt="issues" />] (https://img.shields.io/github/issues/bcgsc/abyss.svg)
  • W privacy-breach-generic usr/share/doc/abyss/README.html [<img src="https://img.shields.io/github/release/bcgsc/abyss.svg" alt="release" />] (https://img.shields.io/github/release/bcgsc/abyss.svg)
• adapterremoval 2.3.1-3
• adapterremoval_2.3.1-3_amd64.deb (main)
  • W privacy-breach-generic usr/share/doc/adapterremoval/README.html [<img src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" alt="coveralls" title="" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • W privacy-breach-generic usr/share/doc/adapterremoval/README.html [<img src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" alt="travis" title="" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)
• adun.app 0.81-14
• adun-core_0.81-14_amd64.deb (main)
  • W breakout-link usr/lib/adun.app/libAdunKernel.so.0.13 -> usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
  • W breakout-link usr/lib/adun.app/libAdunKernel.so.0 -> usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0
  • W breakout-link usr/lib/adun.app/libAdunKernel.so -> usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/Current/libAdunKernel.so
  • W breakout-link usr/lib/adun.app/libMolTalk.so.3.0.1 -> usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1
  • W breakout-link usr/lib/adun.app/libMolTalk.so.3 -> usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3
  • W breakout-link usr/lib/adun.app/libMolTalk.so -> usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/Current/libMolTalk.so
  • W breakout-link usr/lib/adun.app/libULFramework.so.0.6 -> usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so.0.6
  • W breakout-link usr/lib/adun.app/libULFramework.so.0 -> usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so.0
  • W breakout-link usr/lib/adun.app/libULFramework.so -> usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/Current/libULFramework.so
  • W breakout-link usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/Headers -> usr/include/GNUstep/Frameworks/AdunKernel.framework/Versions/0
  • W breakout-link usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/Resources -> usr/share/GNUstep/Frameworks/AdunKernel.framework/Versions/0
  • W breakout-link usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/Headers -> usr/include/GNUstep/Frameworks/MolTalk.framework/Versions/3
  • W breakout-link usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/Resources -> usr/share/GNUstep/Frameworks/MolTalk.framework/Versions/3
  • W breakout-link usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/Headers -> usr/include/GNUstep/Frameworks/ULFramework.framework/Versions/0
  • W breakout-link usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/Resources -> usr/share/GNUstep/Frameworks/ULFramework.framework/Versions/0
• adun.app_0.81-14_amd64.deb (main)
  • W breakout-link usr/lib/GNUstep/Applications/UL.app/Resources -> usr/share/GNUstep/UL.app
• aevol 5.0+ds-2
• aevol_5.0+ds-2_amd64.deb (main)
  • W groff-message usr/share/man/man1/aevol_misc_ancestor_stats.1.gz (line 1) 1: warning: macro '/"test' not defined
  • W groff-message usr/share/man/man1/aevol_misc_view.1.gz (line 1) 1: warning: macro '/"test' not defined
  • W no-manual-page usr/bin/aevol_misc_ancestor_robustness
  • W no-manual-page usr/bin/aevol_misc_mutagenesis
• alien-hunter 1.7-8
• alien-hunter_1.7-8_all.deb (main)
  • W package-installs-java-bytecode usr/share/alien_hunter/ChangepointLeft$1.class
  • W package-installs-java-bytecode usr/share/alien_hunter/ChangepointLeft.class
  • W package-installs-java-bytecode usr/share/alien_hunter/ChangepointRight$1.class
  • W package-installs-java-bytecode usr/share/alien_hunter/ChangepointRight.class
• allelecount 4.2.1-1
• liballelecount-perl_4.2.1-1_all.deb (main)
  • W bad-whatis-entry usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm.gz
  • W pod-conversion-message usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm.gz:118
• altree 1.3.1-10
• altree_1.3.1-10+b1_amd64.deb (main)
  • W national-encoding usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Chi2.pm
  • W national-encoding usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Import.pm
  • W national-encoding usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Input.pm
  • W national-encoding usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Node.pm
  • W national-encoding usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/SitePerForet.pm
  • W national-encoding usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/SiteSensPerTree.pm
  • W national-encoding usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/to_rewrite.pm
  • W national-encoding usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Tree.pm
• amap-align 2.2+git20080214.600fc29+dfsg-2
• amap-align_2.2+git20080214.600fc29+dfsg-2_amd64.deb (main)
  • W executable-not-elf-or-script usr/share/doc/amap-align/examples/BB12020.tfa.out
• arb 6.0.6-4
• arb_6.0.6-4.dsc (non-free)
  • E malformed-override Unknown tag outdated-autotools-helper-file in line 2
• arb_6.0.6-4_amd64.deb (non-free)
  • W breakout-link usr/lib/arb/bin/arb_readseq -> usr/bin/readseq
  • W breakout-link usr/lib/arb/bin/clique -> usr/lib/phylip/bin/clique
  • W breakout-link usr/lib/arb/bin/consense -> usr/lib/phylip/bin/consense
  • W breakout-link usr/lib/arb/bin/contml -> usr/lib/phylip/bin/contml
  • W breakout-link usr/lib/arb/bin/contrast -> usr/lib/phylip/bin/contrast
  • W breakout-link usr/lib/arb/bin/dnacomp -> usr/lib/phylip/bin/dnacomp
  • W breakout-link usr/lib/arb/bin/dnadist -> usr/lib/phylip/bin/dnadist
  • W breakout-link usr/lib/arb/bin/dnainvar -> usr/lib/phylip/bin/dnainvar
  • W breakout-link usr/lib/arb/bin/dnamlk -> usr/lib/phylip/bin/dnamlk
  • W breakout-link usr/lib/arb/bin/dnaml -> usr/lib/phylip/bin/dnaml
  • W breakout-link usr/lib/arb/bin/dnamove -> usr/lib/phylip/bin/dnamove
  • W breakout-link usr/lib/arb/bin/dnapars -> usr/lib/phylip/bin/dnapars
  • W breakout-link usr/lib/arb/bin/dnapenny -> usr/lib/phylip/bin/dnapenny
  • W breakout-link usr/lib/arb/bin/dollop -> usr/lib/phylip/bin/dollop
  • W breakout-link usr/lib/arb/bin/dolmove -> usr/lib/phylip/bin/dolmove
  • W breakout-link usr/lib/arb/bin/dolpenny -> usr/lib/phylip/bin/dolpenny
  • W breakout-link usr/lib/arb/bin/drawgram -> usr/lib/phylip/bin/drawgram
  • W breakout-link usr/lib/arb/bin/drawtree -> usr/lib/phylip/bin/drawtree
  • W breakout-link usr/lib/arb/bin/factor -> usr/lib/phylip/bin/factor
  • W breakout-link usr/lib/arb/bin/fastdnaml -> usr/bin/fastDNAml
  • W breakout-link usr/lib/arb/bin/fitch -> usr/lib/phylip/bin/fitch
  • W breakout-link usr/lib/arb/bin/gendist -> usr/lib/phylip/bin/gendist
  • W breakout-link usr/lib/arb/bin/kitsch -> usr/lib/phylip/bin/kitsch
  • W breakout-link usr/lib/arb/bin/mix -> usr/lib/phylip/bin/mix
  • W breakout-link usr/lib/arb/bin/move -> usr/lib/phylip/bin/move
  • W breakout-link usr/lib/arb/bin/neighbor -> usr/lib/phylip/bin/neighbor
  • W breakout-link usr/lib/arb/bin/pars -> usr/lib/phylip/bin/pars
  • W breakout-link usr/lib/arb/bin/penny -> usr/lib/phylip/bin/penny
  • W breakout-link usr/lib/arb/bin/promlk -> usr/lib/phylip/bin/promlk
  • W breakout-link usr/lib/arb/bin/proml -> usr/lib/phylip/bin/proml
  • W breakout-link usr/lib/arb/bin/protdist -> usr/lib/phylip/bin/protdist
  • W breakout-link usr/lib/arb/bin/protpars -> usr/lib/phylip/bin/protpars
  • W breakout-link usr/lib/arb/bin/puzzle -> usr/bin/tree-puzzle
  • W breakout-link usr/lib/arb/bin/restdist -> usr/lib/phylip/bin/restdist
  • W breakout-link usr/lib/arb/bin/restml -> usr/lib/phylip/bin/restml
  • W breakout-link usr/lib/arb/bin/retree -> usr/lib/phylip/bin/retree
  • W breakout-link usr/lib/arb/bin/seqboot -> usr/lib/phylip/bin/seqboot
  • W breakout-link usr/lib/arb/bin/treedist -> usr/lib/phylip/bin/treedist
• arb-common_6.0.6-4_all.deb (non-free)
  • W breakout-link usr/lib/arb/lib/arb_default -> etc/arb/arb_default
  • W breakout-link usr/lib/arb/lib/export -> etc/arb/export
  • W breakout-link usr/lib/arb/lib/gde -> etc/arb/gde
  • W breakout-link usr/lib/arb/lib/import -> etc/arb/import
  • W breakout-link usr/lib/arb/lib/inputMasks -> etc/arb/inputMasks
  • W breakout-link usr/lib/arb/lib/macros -> etc/arb/macros
  • W breakout-link usr/lib/arb/lib/motifHack -> usr/share/arb/motifHack
  • W breakout-link usr/lib/arb/lib/nas -> var/lib/arb/nas
  • W breakout-link usr/lib/arb/lib/pictures -> usr/share/arb/pictures
  • W breakout-link usr/lib/arb/lib/pixmaps -> usr/share/arb/pixmaps
  • W breakout-link usr/lib/arb/lib/pts -> var/lib/arb/pts
  • W breakout-link usr/lib/arb/lib/rna3d -> usr/share/arb/rna3d
  • W breakout-link usr/lib/arb/lib/sellists -> etc/arb/sellists
  • W breakout-link usr/lib/arb/lib/submit -> etc/arb/submit
  • W duplicate-changelog-files usr/share/doc/arb-common/arb_CHANGES.txt.gz usr/share/doc/arb-common/changelog.gz usr/share/doc/arb/arb_CHANGES.txt.gz
• arb-doc_6.0.6-4_all.deb (non-free)
  • E malformed-override Unknown tag doc-package-should-be-section-doc in line 6
• libarb-dev_6.0.6-4_amd64.deb (non-free)
  • W breakout-link usr/lib/arb/INCLUDE -> usr/include/arb
• arden 1.0-5
• arden_1.0-5.dsc (main)
  • W incorrect-packaging-filename debian/NEWS.Debian -> debian/NEWS
• artemis 18.1.0+dfsg-3
• artemis_18.1.0+dfsg-3_amd64.deb (main)
  • W bad-jar-name usr/share/java/act.jar
  • W bad-jar-name usr/share/java/artemis.jar
  • W bad-jar-name usr/share/java/bamview.jar
  • W bad-jar-name usr/share/java/dnaplotter.jar
• augustus 3.4.0+dfsg2-2
• augustus_3.4.0+dfsg2-2.dsc (main)
  • W patch-file-present-but-not-mentioned-in-series keep_cflags
• augustus-data_3.4.0+dfsg2-2_all.deb (main)
  • W national-encoding usr/share/augustus/config/species/sealamprey/sealamprey_parameters.cfg
• ball 1.5.0+git20180813.37fc53c-6
• ball_1.5.0+git20180813.37fc53c-6.dsc (main)
  • W dependency-is-not-multi-archified libballview1.5-dev depends on libballview1.5 (multi-arch: no)
• libball1.5-data_1.5.0+git20180813.37fc53c-6_all.deb (main)
  • W national-encoding usr/share/BALL-1.5/gui-test/tutorial.btf
  • W national-encoding usr/share/BALL-1.5/structures/test.btf
  • W unusual-interpreter usr/share/BALL-1.5/Amber/converter/parmConverter.py /usr/bin/python
• libball1.5-doc_1.5.0+git20180813.37fc53c-6_all.deb (main)
  • E malformed-override Unknown tag postinst-does-not-call-installdocs in line 1
  • E malformed-override Unknown tag prerm-does-not-call-installdocs in line 2
• bamclipper 1.0.0-2
• bamclipper_1.0.0-2_all.deb (main)
  • W debian-changelog-line-too-long line 3
  • W no-manual-page usr/bin/bamclipper.sh
• bamkit 0.0.1+git20170413.ccd079d-2
• bamkit_0.0.1+git20170413.ccd079d-2_all.deb (main)
  • W no-manual-page usr/bin/sectosupp
• bamtools 2.5.1+dfsg-9
• bamtools_2.5.1+dfsg-9_amd64.deb (main)
  • E malformed-override Unknown tag description-contains-duplicated-word in line 2
• barrnap 0.9+dfsg-2
• barrnap_0.9+dfsg-2_all.deb (main)
  • E malformed-override Unknown tag no-upstream-changelog in line 2
• bart 0.6.00-3
• bart_0.6.00-3.dsc (main)
  • W superficial-tests
• bart-cuda 0.6.00-1
• bart-cuda_0.6.00-1.dsc (contrib)
  • W superficial-tests
• bart-cuda_0.6.00-1_amd64.deb (contrib)
  • E custom-library-search-path usr/bin/bart /usr/lib
  • W initial-upload-closes-no-bugs
  • W no-manual-page usr/bin/bart
• bbmap 38.90+dfsg-1
• bbmap_38.90+dfsg-1_all.deb (main)
  • W bad-jar-name usr/share/java/bbmap.jar
  • W groff-message usr/share/man/man1/bbduk.sh.1.gz (line 1) 570: warning: macro 'pratio=G,C'' not defined
• bcbio 1.2.5-1
• bcbio_1.2.5-1.dsc (contrib)
  • W sphinxdoc-but-no-sphinxdoc-depends
• bcbio_1.2.5-1_all.deb (contrib)
  • E empty-manual-page usr/share/man/man1/bcbio_nextgen.1.gz
  • W no-manual-page usr/bin/bcbio_fastq_umi_prep.py
  • W no-manual-page usr/bin/bcbio_nextgen.py
  • W no-manual-page usr/bin/bcbio_prepare_samples.py
  • W no-manual-page usr/bin/bcbio_setup_genome.py
  • W no-manual-page usr/bin/cwltool2wdl.py
  • W script-not-executable usr/share/bcbio/config/examples/archived/NA12878-trio-sv-getdata.sh
  • W script-not-executable usr/share/bcbio/config/examples/cancer-dream-syn3-getdata.sh
  • W script-not-executable usr/share/bcbio/config/examples/cancer-giab-na12878-na24385-getdata.sh
  • W script-not-executable usr/share/bcbio/config/examples/giab-validate-setup.sh
  • W script-not-executable usr/share/bcbio/config/examples/HCC2218-sv-getdata.sh
  • W script-not-executable usr/share/bcbio/config/examples/NA12878-exome-methodcmp-getdata.sh
  • W script-not-executable usr/share/bcbio/config/examples/NA12878-hg38-validate-getdata.sh
  • W script-not-executable usr/share/bcbio/config/examples/NA12878-sv-getdata.sh
  • W script-not-executable usr/share/bcbio/config/examples/NA12878-trio-wgs-validate-getdata.sh
  • W script-not-executable usr/share/bcbio/config/examples/NA12878.validate.sh
  • W script-not-executable usr/share/bcbio/config/examples/NA24385-10x-getdata.sh
  • W script-not-executable usr/share/bcbio/config/examples/rnaseq-seqc-getdata.sh
  • W script-not-executable usr/share/bcbio/config/teaching/cancer-syn3-chr6-prep.sh
• bcftools 1.11-1
• bcftools_1.11-1_amd64.deb (main)
  • W no-manual-page usr/bin/gff2gff.py
  • W no-manual-page usr/bin/guess-ploidy.py
  • W no-manual-page usr/bin/plot-roh.py
  • W no-manual-page usr/bin/run-roh.pl
  • W script-with-language-extension usr/bin/color-chrs.pl
  • W script-with-language-extension usr/bin/gff2gff.py
  • W script-with-language-extension usr/bin/guess-ploidy.py
  • W script-with-language-extension usr/bin/plot-roh.py
  • W script-with-language-extension usr/bin/run-roh.pl
  • W script-with-language-extension usr/bin/vcfutils.pl
• beagle 5.1-200518+dfsg-1
• beagle_5.1-200518+dfsg-1.dsc (main)
  • W national-encoding debian/upstream.docs/README
• beast-mcmc 1.10.4+dfsg-2
• beast-mcmc_1.10.4+dfsg-2_all.deb (main)
  • W no-manual-page usr/bin/beast-tracer
  • W no-manual-page usr/bin/loganalyser
  • W no-manual-page usr/bin/logcombiner
  • W no-manual-page usr/bin/treeannotator
  • W no-manual-page usr/bin/treestat
• libnucleotidelikelihoodcore0_1.10.4+dfsg-2_amd64.deb (main)
  • W shared-library-lacks-prerequisites usr/lib/libNucleotideLikelihoodCore.so.0
• bedops 2.4.39+dfsg1-2
• bedops_2.4.39+dfsg1-2_amd64.deb (main)
  • W csh-considered-harmful usr/bin/bam2bed_gnuParallel
  • W csh-considered-harmful usr/bin/bam2bed_sge
  • W csh-considered-harmful usr/bin/bam2bed_slurm
  • W csh-considered-harmful usr/bin/bam2starch_gnuParallel
  • W csh-considered-harmful usr/bin/bam2starch_sge
  • W csh-considered-harmful usr/bin/bam2starch_slurm
  • W csh-considered-harmful usr/bin/starchcluster_gnuParallel
  • W csh-considered-harmful usr/bin/starchcluster_sge
  • W csh-considered-harmful usr/bin/starchcluster_slurm
  • W no-manual-page usr/bin/bam2bed_gnuParallel
  • W no-manual-page usr/bin/bam2bed_sge
  • W no-manual-page usr/bin/bam2bed_slurm
  • W no-manual-page usr/bin/bam2starch_gnuParallel
  • W no-manual-page usr/bin/bam2starch_sge
  • W no-manual-page usr/bin/bam2starch_slurm
  • W no-manual-page usr/bin/starchcluster_gnuParallel
  • W no-manual-page usr/bin/starchcluster_sge
  • W no-manual-page usr/bin/starchcluster_slurm
  • W useless-whatis-entry usr/share/man/man1/bam2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/bam2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/bedextract.1.gz
  • W useless-whatis-entry usr/share/man/man1/bedmap.1.gz
  • W useless-whatis-entry usr/share/man/man1/bedops.1.gz
  • W useless-whatis-entry usr/share/man/man1/bedops-starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/closest-features.1.gz
  • W useless-whatis-entry usr/share/man/man1/convert2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/gff2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/gff2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/gtf2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/gtf2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/gvf2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/gvf2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/psl2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/psl2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/rmsk2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/rmsk2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/sam2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/sam2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/sort-bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/starchcat.1.gz
  • W useless-whatis-entry usr/share/man/man1/starch-diff.1.gz
  • W useless-whatis-entry usr/share/man/man1/starchstrip.1.gz
  • W useless-whatis-entry usr/share/man/man1/unstarch.1.gz
  • W useless-whatis-entry usr/share/man/man1/update-sort-bed-migrate-candidates.1.gz
  • W useless-whatis-entry usr/share/man/man1/update-sort-bed-slurm.1.gz
  • W useless-whatis-entry usr/share/man/man1/update-sort-bed-starch-slurm.1.gz
  • W useless-whatis-entry usr/share/man/man1/vcf2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/vcf2starch.1.gz
  • W useless-whatis-entry usr/share/man/man1/wig2bed.1.gz
  • W useless-whatis-entry usr/share/man/man1/wig2starch.1.gz
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/001.not-element-of.001.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/002.complement.002.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/003.intersection.003.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/004.element-of.004.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/005.symdiff.005.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/006.difference.006.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/006.union.006.expected
  • W zero-byte-file-in-doc-directory usr/share/doc/bedops/tests/bedops/data/007.difference.007.expected
• bedops-doc_2.4.39+dfsg1-2_all.deb (main)
  • W embedded-javascript-library usr/share/doc/bedops/html/_static/doctools.js please use sphinx
  • W embedded-javascript-library usr/share/doc/bedops/html/_static/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/bedops/html/_static/language_data.js please use sphinx
  • W embedded-javascript-library usr/share/doc/bedops/html/_static/searchtools.js please use sphinx
  • W embedded-javascript-library usr/share/doc/bedops/html/_static/underscore.js please use libjs-underscore
  • W privacy-breach-generic usr/share/doc/bedops/html/content/installation.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/overview.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/performance.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/placeholder.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/starchcat.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/starch-diff.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/starch.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/starch-specification.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/starchstrip.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/compression/unstarch.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/bam2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/convert2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/gff2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/gtf2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/gvf2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/parallel_bam2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/parallel_bam2starch.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/psl2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/rmsk2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/sam2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/vcf2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/conversion/wig2bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/sorting.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/file-management/sorting/sort-bed.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/set-operations/bedextract.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/set-operations/bedops.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/set-operations/closest-features.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/set-operations.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/set-operations/nested-elements.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/statistics/bedmap.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/reference/statistics.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/release.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/revision-history.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/summary.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/usage-examples/distance-frequencies.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/usage-examples.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/usage-examples/master-list.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/usage-examples/multiple-inputs.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/usage-examples/smoothing-tags.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/usage-examples/snps-within-dhses.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/usage-examples/snp-visualization.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/content/usage-examples/starchcluster.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/genindex.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/index.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
  • W privacy-breach-generic usr/share/doc/bedops/html/search.html [<script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml">] (https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=tex-ams-mml_htmlormml)
• bedtools 2.30.0+dfsg-1
• bedtools_2.30.0+dfsg-1_amd64.deb (main)
  • W no-manual-page usr/bin/annotateBed
  • W no-manual-page usr/bin/bamToBed
  • W no-manual-page usr/bin/bamToFastq
  • W no-manual-page usr/bin/bed12ToBed6
  • W no-manual-page usr/bin/bedpeToBam
  • W no-manual-page usr/bin/bedToBam
  • W no-manual-page usr/bin/bedToIgv
  • W no-manual-page usr/bin/bedtools
  • W no-manual-page usr/bin/closestBed
  • W no-manual-page usr/bin/clusterBed
  • W no-manual-page usr/bin/complementBed
  • W no-manual-page usr/bin/coverageBed
  • W no-manual-page usr/bin/expandCols
  • W no-manual-page usr/bin/fastaFromBed
  • W no-manual-page usr/bin/flankBed
  • W no-manual-page usr/bin/genomeCoverageBed
  • W no-manual-page usr/bin/getOverlap
  • W no-manual-page usr/bin/groupBy
  • W no-manual-page usr/bin/intersectBed
  • W no-manual-page usr/bin/linksBed
  • W no-manual-page usr/bin/mapBed
  • W no-manual-page usr/bin/maskFastaFromBed
  • W no-manual-page usr/bin/mergeBed
  • W no-manual-page usr/bin/multiBamCov
  • W no-manual-page usr/bin/multiIntersectBed
  • W no-manual-page usr/bin/nucBed
  • W no-manual-page usr/bin/pairToBed
  • W no-manual-page usr/bin/pairToPair
  • W no-manual-page usr/bin/randomBed
  • W no-manual-page usr/bin/shiftBed
  • W no-manual-page usr/bin/shuffleBed
  • W no-manual-page usr/bin/slopBed
  • W no-manual-page usr/bin/sortBed
  • W no-manual-page usr/bin/subtractBed
  • W no-manual-page usr/bin/tagBam
  • W no-manual-page usr/bin/unionBedGraphs
  • W no-manual-page usr/bin/windowBed
  • W no-manual-page usr/bin/windowMaker
• bedtools-test_2.30.0+dfsg-1_all.deb (main)
  • W executable-not-elf-or-script usr/share/bedtools/data/knownGene.hg18.chr21.bed
  • W executable-not-elf-or-script usr/share/bedtools/test/bamtofastq/test.sam
  • W script-not-executable usr/share/bedtools/test/bamtobed/test-bamtobed.sh
  • W script-not-executable usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
  • W script-not-executable usr/share/bedtools/test/bedtobam/test-bedtobam.sh
  • W script-not-executable usr/share/bedtools/test/bigchroms/test-bigchroms.sh
  • W script-not-executable usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
  • W script-not-executable usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
  • W script-not-executable usr/share/bedtools/test/closest/test-closest.sh
  • W script-not-executable usr/share/bedtools/test/cluster/test-cluster.sh
  • W script-not-executable usr/share/bedtools/test/complement/test-complement.sh
  • W script-not-executable usr/share/bedtools/test/expand/test-expand.sh
  • W script-not-executable usr/share/bedtools/test/fisher/cmp.sh
  • W script-not-executable usr/share/bedtools/test/fisher/get.sh
  • W script-not-executable usr/share/bedtools/test/fisher/shuf.sh
  • W script-not-executable usr/share/bedtools/test/fisher/test-fisher.sh
  • W script-not-executable usr/share/bedtools/test/flank/test-flank.sh
  • W script-not-executable usr/share/bedtools/test/general/test-general.sh
  • W script-not-executable usr/share/bedtools/test/getfasta/test-getfasta.sh
  • W script-not-executable usr/share/bedtools/test/groupby/test-groupby.sh
  • W script-not-executable usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
  • W script-not-executable usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
  • W script-not-executable usr/share/bedtools/test/intersect/test-intersect.sh
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• berkeley-express 1.5.3+dfsg-1
• berkeley-express_1.5.3+dfsg-1.dsc (main)
  • W tab-in-license-text debian/copyright (starting at line 18)
• biobambam2 2.0.179+ds-1
• biobambam2_2.0.179+ds-1_amd64.deb (main)
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• biococoa 2.2.2-5
• biococoa_2.2.2-5.dsc (main)
  • W debhelper-but-no-misc-depends libbiococoa2
  • W debhelper-but-no-misc-depends libbiococoa-dev
• libbiococoa-dev_2.2.2-5_amd64.deb (main)
  • W breakout-link usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Headers -> usr/include/GNUstep/Frameworks/BioCocoa.framework/Versions/2
  • W national-encoding usr/include/GNUstep/Frameworks/BioCocoa.framework/Versions/2/BCSymbolSet.h
• libbiococoa2_2.2.2-5_amd64.deb (main)
  • W breakout-link usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/Resources -> usr/share/GNUstep/Frameworks/BioCocoa.framework/Versions/2
• biojava4-live 4.2.12+dfsg-3.1
• biojava4-live_4.2.12+dfsg-3.1.dsc (main)
  • W patch-file-present-but-not-mentioned-in-series fix_code_to_support_latest_jmol
  • W patch-file-present-but-not-mentioned-in-series fix_uselog4j1
  • W patch-file-present-but-not-mentioned-in-series java8_compatibility.patch
• biojava-live 1:1.7.1-9
• libbiojava-java-doc_1.7.1-9_all.deb (main)
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-3.5.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
  • W national-encoding usr/share/doc/libbiojava-java/api/org/biojava/bio/program/das/dasalignment/DASException.html
  • W national-encoding usr/share/doc/libbiojava-java/api/org/biojava/bio/structure/io/PDBParseException.html
  • W national-encoding usr/share/doc/libbiojava-java/api/org/biojava/bio/structure/StructureException.html
• libbiojava1.7-java_1.7.1-9_all.deb (main)
  • W bad-jar-name usr/share/java/biojava1.7.1.jar
• biomaj3 3.1.18-2
• python3-biomaj3_3.1.18-2_all.deb (main)
  • W executable-not-elf-or-script usr/share/doc/python3-biomaj3/examples/tools/process/formatdb.sh
  • W no-manual-page usr/bin/biomaj_migrate_database.py
  • W unknown-field Python-Egg-Name
• biomaj3-cli 3.1.11-1
• biomaj3-cli_3.1.11-1.dsc (main)
  • W debian-rules-sets-DEB_BUILD_OPTIONS line 3
  • W package-uses-deprecated-debhelper-compat-version 9
• python3-biomaj3-cli_3.1.11-1_all.deb (main)
  • W no-manual-page usr/bin/biomaj-cli
  • W no-manual-page usr/bin/biomaj-cli.py
  • W script-with-language-extension usr/bin/biomaj-cli.py
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• biomaj3-core 3.0.26-1
• python3-biomaj3-core_3.0.26-1_all.deb (main)
  • W unknown-field Python-Egg-Name
• biomaj3-daemon 3.0.22-2
• python3-biomaj3-daemon_3.0.22-2_all.deb (main)
  • W no-manual-page usr/bin/biomaj-daemon-consumer
  • W no-manual-page usr/bin/biomaj_daemon_consumer.py
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• biomaj3-download 3.2.4-1
• python3-biomaj3-download_3.2.4-1_all.deb (main)
  • W no-manual-page usr/bin/biomaj-download-consumer
  • W no-manual-page usr/bin/biomaj_download_consumer.py
  • W no-manual-page usr/bin/biomaj-download-web
• biomaj3-process 3.0.16-2
• biomaj3-process_3.0.16-2.dsc (main)
  • W debian-rules-sets-DEB_BUILD_OPTIONS line 3
• python3-biomaj3-process_3.0.16-2_all.deb (main)
  • W no-manual-page usr/bin/biomaj-process-consumer
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  • W no-manual-page usr/bin/biomaj-process-web
  • W script-with-language-extension usr/bin/biomaj_process_consumer.py
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• biomaj3-user 3.0.10-1
• python3-biomaj3-user_3.0.10-1_all.deb (main)
  • W no-manual-page usr/bin/biomaj-users
  • W no-manual-page usr/bin/biomaj-users.py
  • W no-manual-page usr/bin/biomaj-users-web
  • W unknown-field Python-Egg-Name
• biomaj3-zipkin 0.2.2-1.1
• biomaj3-zipkin_0.2.2-1.1.dsc (main)
  • W debian-rules-sets-DEB_BUILD_OPTIONS line 3
  • W no-nmu-in-changelog
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• python3-biomaj3-zipkin_0.2.2-1.1_all.deb (main)
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• bioperl-run 1.7.3-6
• bioperl-run_1.7.3-6_all.deb (main)
  • W mismatched-override script-with-language-extension usr/bin/bp_bioperl_application_installer.pl
• libbio-perl-run-perl_1.7.3-6_all.deb (main)
  • W bad-whatis-entry usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm.gz
  • W bad-whatis-entry usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz
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  • W bad-whatis-entry usr/share/man/man3/Bio::Tools::Run::Signalp.3pm.gz
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• bio-rainbow 2.0.4+dfsg-2
• bio-rainbow_2.0.4+dfsg-2.dsc (main)
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• biosig 2.1.2-4
• biosig_2.1.2-4.dsc (main)
  • W configure-generated-file-in-source config.log
  • W configure-generated-file-in-source config.status
  • W superficial-tests
• biosyntax 1.0.0b-2
• biosyntax_1.0.0b-2.dsc (main)
  • W inconsistent-appstream-metadata-license debian/copyright doc/biosyntax-gedit.metainfo.xml (cc0-1.0 != gpl-3)
  • W inconsistent-appstream-metadata-license debian/copyright doc/biosyntax-vim.metainfo.xml (cc0-1.0 != gpl-3)
• bio-tradis 1.4.5+dfsg2-1
• bio-tradis_1.4.5+dfsg2-1_all.deb (main)
  • W syntax-error-in-debian-news-file line 3 "unrecognised line"
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• bio-vcf 0.9.5-2
• bio-vcf_0.9.5-2.dsc (main)
  • W rubygem-homepage https://rubygems.org/gems/bio-vcf/
• bio-vcf_0.9.5-2_all.deb (main)
  • W no-manual-page usr/bin/bio-vcf
• bitseq 0.7.5+dfsg-5
• bitseq_0.7.5+dfsg-5_amd64.deb (main)
  • W no-manual-page usr/bin/biocUpdate
  • W no-manual-page usr/bin/checkTR
• bowtie2 2.4.2-3~0exp0simde
• bowtie2_2.4.2-3~0exp0simde.dsc (main)
  • W build-depends-on-1-revision Build-Depends: libsimde-dev (>= 0.7.0~rc-1)
• brian 2.4.2-6
• python-brian-doc_2.4.2-6_all.deb (main)
  • W embedded-javascript-library usr/share/doc/python-brian-doc/docs/_static/doctools.js please use sphinx
  • W embedded-javascript-library usr/share/doc/python-brian-doc/docs/_static/language_data.js please use sphinx
  • W embedded-javascript-library usr/share/doc/python-brian-doc/docs/_static/searchtools.js please use sphinx
  • W package-contains-vcs-control-file usr/share/doc/python-brian-doc/examples/frompapers/.gitignore
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• python3-brian_2.4.2-6_all.deb (main)
  • W privacy-breach-generic usr/share/doc/python3-brian/README.html [<img src="https://archive.softwareheritage.org/badge/swh:1:rel:3f86a656a919ae3e6ed6dfc664e121ece3c85d75/" alt="image" />] (https://archive.softwareheritage.org/badge/swh:1:rel:3f86a656a919ae3e6ed6dfc664e121ece3c85d75/)
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  • W privacy-breach-generic usr/share/doc/python3-brian/README.html [<img src="https://dev.azure.com/brian-team/brian2/_apis/build/status/brian-team.brian2?branchname=master" alt="image" />] (https://dev.azure.com/brian-team/brian2/_apis/build/status/brian-team.brian2?branchname=master)
  • W privacy-breach-generic usr/share/doc/python3-brian/README.html [<img src="https://img.shields.io/badge/contributor%20covenant-v1.4%20adopted-ff69b4.svg" alt="contributor covenant" />] (https://img.shields.io/badge/contributor%20covenant-v1.4%20adopted-ff69b4.svg)
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  • W privacy-breach-generic usr/share/doc/python3-brian/README.html [<img src="https://img.shields.io/travis/brian-team/brian2/master.svg" alt="image" />] (https://img.shields.io/travis/brian-team/brian2/master.svg)
  • W privacy-breach-generic usr/share/doc/python3-brian/README.html [<img src="https://readthedocs.org/projects/brian2/badge/?version=stable" alt="documentation status" />] (https://readthedocs.org/projects/brian2/badge/?version=stable)
  • W privacy-breach-generic usr/share/doc/python3-brian/README.html [<img src="https://zenodo.org/badge/doi/10.5281/zenodo.654861.svg" alt="image" />] (https://zenodo.org/badge/doi/10.5281/zenodo.654861.svg)
• brig 0.95+dfsg-3
• brig_0.95+dfsg-3_amd64.deb (main)
  • W bad-jar-name usr/share/java/BRIG-0.95.jar
  • W no-manual-page usr/bin/brig
• bustools 0.40.0-4
• bustools_0.40.0-4_amd64.deb (main)
  • W useless-whatis-entry usr/share/man/man1/bustools.1.gz
• camitk 4.1.2-4
• libcamitk-dev_4.1.2-4_amd64.deb (main)
  • W breaks-without-version libvtk6-dev
  • W breaks-without-version libvtk6-java
  • W breaks-without-version libvtk6-jni
  • W breaks-without-version libvtk6-qt-dev
• canu 2.0+dfsg-1
• canu_2.0+dfsg-1.dsc (main)
  • E no-human-maintainers
• cct 1:1.0.0-1
• cct_1.0.0-1_all.deb (main)
  • W executable-not-elf-or-script usr/share/cct/lib/scripts/assign_cogs/assign_cogs.pl
  • W executable-not-elf-or-script usr/share/cct/lib/scripts/cgview_xml_builder/cgview_xml_builder.pl
  • W executable-not-elf-or-script usr/share/cct/lib/scripts/get_cds/get_cds.pl
  • W executable-not-elf-or-script usr/share/cct/lib/scripts/get_orfs/get_orfs.pl
  • W executable-not-elf-or-script usr/share/cct/lib/scripts/local_blast_client/local_blast_client.pl
  • W executable-not-elf-or-script usr/share/cct/lib/scripts/sequence_to_multi_fasta/sequence_to_multi_fasta.pl
  • W no-manual-page usr/bin/build_cog_db
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• cd-hit 4.8.1-3
• cd-hit_4.8.1-3_amd64.deb (main)
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  • W no-manual-page usr/bin/clstr_sort_by
  • W no-manual-page usr/bin/clstr_sort_prot_by
  • W no-manual-page usr/bin/make_multi_seq
• chip-seq 1.5.5-3
• chip-seq_1.5.5-3_amd64.deb (main)
  • W no-manual-page usr/bin/check_bed.pl
  • W no-manual-page usr/bin/chr_replace_sga.pl
  • W no-manual-page usr/bin/eland2sga.pl
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• chromhmm 1.21+dfsg-1
• chromhmm_1.21+dfsg-1_all.deb (main)
  • W bad-jar-name usr/share/java/chromhmm.jar
• chromimpute 1.0.3+dfsg-2
• chromimpute_1.0.3+dfsg-2.dsc (main)
  • W superficial-tests
• chromimpute_1.0.3+dfsg-2_all.deb (main)
  • W bad-jar-name usr/share/java/chromimpute.jar
• circos 0.69.9+dfsg-2
• circos_0.69.9+dfsg-2_all.deb (main)
  • W bad-whatis-entry usr/share/man/man1/circos.1.gz
• fonts-circos-symbols_0.69.9+dfsg-2_all.deb (main)
  • W opentype-font-prohibits-installable-embedding [edit only] usr/share/circos/fonts/symbols/circossymbols.otf
• cnvkit 0.9.8-1
• cnvkit_0.9.8-1_amd64.deb (main)
  • W breakout-link usr/lib/debian-med/bin/cnvkit.py -> usr/bin/cnvkit
  • W groff-message usr/share/man/man1/cnvkit.1.gz (line 1) 8: warning [p 1, 1.7i]: cannot adjust line
  • W groff-message usr/share/man/man1/cnvkit.1.gz (line 2) 8: warning [p 1, 1.8i]: cannot adjust line
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  • W no-manual-page usr/bin/cnvkit-skg_convert
  • W no-manual-page usr/bin/snpfilter.sh
  • W script-with-language-extension usr/bin/snpfilter.sh
• concavity 0.1+dfsg.1-5
• concavity_0.1+dfsg.1-5.dsc (main)
  • W debian-watch-not-mangling-version opts=dversionmangle=s/.*/0.No-Release/ https://people.debian.org/~eriberto/ FakeWatchNoUpstreamReleaseForThisPackage-(\d\S+)\.gz
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• ctdconverter 2.1-3
• ctdconverter_2.1-3.dsc (main)
  • W superficial-tests
• ctdconverter_2.1-3_all.deb (main)
  • W groff-message usr/share/man/man1/CTDConverter.1.gz (line 1) 75: warning [p 2, 1.8i]: can't break line
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• ctsim 6.0.2-5
• ctsim_6.0.2-5.dsc (main)
  • W superficial-tests
• ctsim-doc_6.0.2-5_all.deb (main)
  • W privacy-breach-generic usr/share/doc/ctsim/examples/simulate.html [<link rel="stylesheet" href="http://www.ctsim.org/main.css" type="text/css">] (http://www.ctsim.org/main.css)
• cwlformat 2021.01.05-1
• cwlformat_2021.01.05-1_all.deb (main)
  • W no-manual-page usr/bin/cwl-explode
  • W no-manual-page usr/bin/cwl-format
• cwltool 3.0.20210124104916-3
• cwltool_3.0.20210124104916-3_all.deb (main)
  • W mismatched-override unusual-interpreter usr/lib/python3/dist-packages/cwltool/hello.simg #!run-singularity
  • W unusual-interpreter usr/lib/python3/dist-packages/cwltool/hello.simg run-singularity
• dcmtk 3.6.5-1
• dcmtk_3.6.5-1.dsc (main)
  • W patch-file-present-but-not-mentioned-in-series 02_system_charls.patch
  • W patch-file-present-but-not-mentioned-in-series 09_charls-2.0.patch
• dcmtk-doc_3.6.5-1_all.deb (main)
  • W syntax-error-in-debian-news-file line 1 "found eof where expected first heading"
• libdcmtk-dev_3.6.5-1_amd64.deb (main)
  • W national-encoding usr/include/dcmtk/dcmsr/codes/dcm.h
  • W syntax-error-in-debian-news-file line 1 "found eof where expected first heading"
• libdcmtk15_3.6.5-1_amd64.deb (main)
  • W syntax-error-in-debian-news-file line 1 "found eof where expected first heading"
• dicom3tools 1.00~20190724083540-1
• dicom3tools_1.00~20190724083540-1.dsc (main)
  • W package-uses-deprecated-debhelper-compat-version 9
• dicompyler 0.4.2.0+git20200106.2643e0e-1
• dicompyler_0.4.2.0+git20200106.2643e0e-1_all.deb (main)
  • W unusual-interpreter usr/share/dicompyler/dicompyler/baseplugins/2dview.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/baseplugins/anonymize.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/baseplugins/dvh.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/baseplugins/quickopen.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/baseplugins/treeview.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/dicomgui.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/dvhdata.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/guidvh.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/guiutil.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/__init__.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/main.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/plugin.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/preferences.py python
  • W unusual-interpreter usr/share/dicompyler/dicompyler/util.py python
• dicomscope 3.6.0-22
• dicomscope_3.6.0-22.dsc (main)
  • W source-contains-prebuilt-windows-binary DICOMscope/tls/iheprt1.rnd
• dicomscope_3.6.0-22_all.deb (main)
  • W bad-jar-name usr/share/java/DICOMscope-3.6.0.jar
• discosnp 4.4.4-1
• discosnp_4.4.4-1_amd64.deb (main)
  • W executable-not-elf-or-script usr/share/discosnp/scripts/from_phased_alleles_to_clusters.sh
  • W executable-not-elf-or-script usr/share/discosnp/scripts/k3000/run.sh
  • W no-manual-page usr/bin/create_coverage_h5_file
  • W no-manual-page usr/bin/run_discoSnp++_ML.sh
  • W no-manual-page usr/bin/run_discoSnp++_storagefile.sh
  • W script-not-executable usr/share/discosnp/discoSnpRAD/post-processing_scripts/vcf2structure.sh
  • W script-not-executable usr/share/discosnp/scripts/simulations/multiple_samples_simulator.sh
• drmaa 0.7.9-2
• drmaa_0.7.9-2.dsc (main)
  • W no-newline-at-end debian/rules
• drop-seq 2.4.0+dfsg-6
• drop-seq-testdata_2.4.0+dfsg-6_all.deb (main)
  • W broken-gz usr/share/doc/drop-seq/examples/org/broadinstitute/transcriptome/barnyard/digitalexpression/dge_example1_filtered.txt.gz
  • W zero-byte-file-in-doc-directory usr/share/doc/drop-seq/examples/org/broadinstitute/transcriptome/barnyard/digitalexpression/dge_example1_filtered.txt.gz
• drop-seq-tools_2.4.0+dfsg-6_all.deb (main)
  • W no-manual-page usr/bin/drop-seq
  • W no-manual-page usr/bin/public_clp_template.sh
• ea-utils 1.1.2+dfsg-6
• ea-utils_1.1.2+dfsg-6.dsc (main)
  • W debian-watch-not-mangling-version opts=dversionmangle=s/.*/0.No-Track/ https://people.debian.org/~eriberto/ FakeWatchNoUpstreamTrackingForThisPackage-(\d\S+)\.gz
• ea-utils_1.1.2+dfsg-6_amd64.deb (main)
  • W breakout-link usr/lib/debian-med/bin/alc -> usr/bin/ea-alc
  • W breakout-link usr/lib/debian-med/share/man/man1/alc.1.gz -> usr/share/man/man1/ea-alc.1.gz
• ecopcr 1.0.1+dfsg-2
• ecopcr_1.0.1+dfsg-2_amd64.deb (main)
  • W no-manual-page usr/bin/ecoPCRFilter
  • W no-manual-page usr/bin/ecoSort
• eegdev 0.2-5
• eegdev_0.2-5.dsc (main)
  • W patch-file-present-but-not-mentioned-in-series compiler-flags-old-way.patch
  • W patch-file-present-but-not-mentioned-in-series lenny-dsc-patch
  • W patch-file-present-but-not-mentioned-in-series lucid-dsc-patch
  • W patch-file-present-but-not-mentioned-in-series maverick-dsc-patch
  • W patch-file-present-but-not-mentioned-in-series natty-dsc-patch
  • W patch-file-present-but-not-mentioned-in-series oneiric-dsc-patch
  • W patch-file-present-but-not-mentioned-in-series squeeze-dsc-patch
• eegdev-plugins-free_0.2-5_amd64.deb (main)
  • W appstream-metadata-missing-modalias-provide lib/udev/rules.d/60-eegdev-plugins-free.rules
• eigensoft 7.2.1+dfsg-2
• eigensoft_7.2.1+dfsg-2_amd64.deb (main)
  • W no-manual-page usr/bin/baseprog
  • W no-manual-page usr/bin/convertf
  • W no-manual-page usr/bin/eigenstrat
  • W no-manual-page usr/bin/eigenstratQTL
  • W no-manual-page usr/bin/evec2pca
  • W no-manual-page usr/bin/evec2pca-ped
  • W no-manual-page usr/bin/gc-eigensoft
  • W no-manual-page usr/bin/mergeit
  • W no-manual-page usr/bin/pca
  • W no-manual-page usr/bin/pcatoy
  • W no-manual-page usr/bin/smartpca
  • W no-manual-page usr/bin/smartrel
  • W no-manual-page usr/bin/smshrink
  • W no-manual-page usr/bin/twstats
• emboss 6.6.0+dfsg-9
• emboss_6.6.0+dfsg-9.dsc (main)
  • W custom-compression-in-debian-rules dh_builddeb -- -Z xz (line 130)
  • W source-contains-prebuilt-windows-binary test/embl/acnum.hit
  • W source-contains-prebuilt-windows-binary test/embl/des.hit
• emboss_6.6.0+dfsg-9_amd64.deb (main)
  • W no-manual-page usr/bin/acdgalaxy
  • W no-manual-page usr/bin/assemblyget
  • W no-manual-page usr/bin/embossupdate
  • W no-manual-page usr/bin/featmerge
  • W no-manual-page usr/bin/infoassembly
  • W no-manual-page usr/bin/jembossctl
  • W no-manual-page usr/bin/refseqget
  • W no-manual-page usr/bin/variationget
  • W no-manual-page usr/bin/xmlget
  • W no-manual-page usr/bin/xmltext
• emboss-doc_6.6.0+dfsg-9_all.deb (main)
  • E doc-base-file-references-missing-file domainatrix:13 /usr/share/doc/emboss-doc/doc/manuals/domainatrix.txt
  • E doc-base-file-references-missing-file emboss-apps:8 /usr/share/doc/emboss-doc/doc/programs/html/index.html
  • E doc-base-file-references-missing-file emboss-apps:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • E doc-base-file-references-missing-file emboss-groups:8 /usr/share/doc/emboss-doc/doc/programs/html/groups.html
  • E doc-base-file-references-missing-file emboss-groups:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • E doc-base-file-references-missing-file emboss-qg:11 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.pdf
  • E doc-base-file-references-missing-file emboss-qg:8 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.ps
• emboss-lib_6.6.0+dfsg-9_amd64.deb (main)
  • W package-has-unnecessary-activation-of-ldconfig-trigger
• emboss-test_6.6.0+dfsg-9_all.deb (main)
  • W csh-considered-harmful usr/share/EMBOSS/test/memtest/purify.csh
  • W csh-considered-harmful usr/share/EMBOSS/test/memtest/valgrind.csh
  • W csh-considered-harmful usr/share/EMBOSS/test/qa/qatest.csh
  • W privacy-breach-generic usr/share/EMBOSS/test/data/memenew/ex1.html [<img src="http://meme.nbcr.net/meme/images/meme.png" alt="meme">] (http://meme.nbcr.net/meme/images/meme.png)
• jemboss_6.6.0+dfsg-9_all.deb (main)
  • W classpath-contains-relative-path usr/share/EMBOSS/jemboss/lib/jemboss.jar: lib/jakarta-regexp-1.2.jar
  • W no-manual-page usr/bin/jemboss
  • W no-manual-page usr/bin/runJemboss.sh
• emboss-explorer 2.2.0-11
• emboss-explorer_2.2.0-11_all.deb (main)
  • W bad-whatis-entry usr/share/man/man1/acdcheck.1p.gz
  • W bad-whatis-entry usr/share/man/man1/mkstatic.1p.gz
  • W pod-conversion-message usr/share/man/man1/acdcheck.1p.gz:104
  • W pod-conversion-message usr/share/man/man1/mkstatic.1p.gz:107
  • W recursive-privilege-change postinst:11
  • W recursive-privilege-change postinst:12
• epigrass 3.0.0+dfsg-1
• epigrass_3.0.0+dfsg-1_amd64.deb (main)
  • W breakout-link usr/lib/python3/dist-packages/Epigrass/egicon.png -> usr/share/pixmaps/epigrass.png
  • W national-encoding usr/share/doc/epigrass/demos/sitios2.csv
  • W no-manual-page usr/bin/epidash
• estscan 3.0.3-5
• estscan_3.0.3-5_amd64.deb (main)
  • W no-manual-page usr/bin/estscan
  • W no-manual-page usr/bin/evaluate_model
  • W no-manual-page usr/bin/extract_EST
  • W no-manual-page usr/bin/extract_UG_EST
  • W no-manual-page usr/bin/makesmat
  • W no-manual-page usr/bin/maskred
  • W no-manual-page usr/bin/prepare_data
  • W no-manual-page usr/bin/winsegshuffle
• examl 3.0.22-3~0exp0simde
• examl_3.0.22-3~0exp0simde.dsc (main)
  • W build-depends-on-1-revision Build-Depends: libsimde-dev (>= 0.7.0~rc-1)
• examl_3.0.22-3~0exp0simde_amd64.deb (main)
  • W no-manual-page usr/bin/examl-OMP
• falcon 1.8.8-1
• falcon_1.8.8-1.dsc (main)
  • E missing-build-dependency-for-dh-addon python2 => python2:any | python2-dev:any | dh-sequence-python2
  • W package-uses-deprecated-debhelper-compat-version 9
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/debian-med/falcon.git
  • W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/debian-med/falcon.git
• falcon_1.8.8-1_amd64.deb (main)
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/falcon-task
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_actg_coordinate
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_actg_coordinate.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_calc_cutoff
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_consensus
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_consensus.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_contig_annotate
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_contig_annotate.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_ctg_link_analysis
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_ctg_link_analysis.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_dedup_a_tigs
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_dedup_a_tigs.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_fasta2fasta
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_fetch_reads
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_get_read_ctg_map
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_graph_to_contig
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_graph_to_contig.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_graph_to_utgs
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_graph_to_utgs.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_ovlp_filter
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_ovlp_filter.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_ovlp_stats
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_ovlp_stats.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_ovlp_to_graph
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_ovlp_to_graph.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_pr_ctg_track
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_rr_ctg_track
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_run
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_run1
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/fc_run.py
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/heartbeat-wrapper
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/pwatcher-main
  • E script-uses-unversioned-python-in-shebang usr/lib/falcon/bin/pwatcher-pypeflow-example
  • W executable-not-elf-or-script usr/share/doc/falcon/examples/run/greg200k-sv2/fc_run.cfg
  • W unusual-interpreter usr/lib/falcon/bin/falcon-task /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_actg_coordinate.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_actg_coordinate /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_calc_cutoff /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_consensus.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_consensus /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_contig_annotate.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_contig_annotate /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_ctg_link_analysis.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_ctg_link_analysis /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_dedup_a_tigs.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_dedup_a_tigs /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_fasta2fasta /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_fetch_reads /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_get_read_ctg_map /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_graph_to_contig.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_graph_to_contig /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_graph_to_utgs.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_graph_to_utgs /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_ovlp_filter.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_ovlp_filter /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_ovlp_stats.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_ovlp_stats /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_ovlp_to_graph.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_ovlp_to_graph /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_pr_ctg_track /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_rr_ctg_track /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_run1 /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_run.py /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/fc_run /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/heartbeat-wrapper /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/pwatcher-main /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/bin/pwatcher-pypeflow-example /usr/bin/python
  • W unusual-interpreter usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/falcon_kit/mains/fasta2fasta.py python2.7
  • W unusual-interpreter usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/falcon_kit/mains/LAmerge.py python
  • W unusual-interpreter usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/falcon_kit/mains/LAsort.py python
  • W unusual-interpreter usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/falcon_kit/mains/report_pre_assembly.py python2.7
  • W unusual-interpreter usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/falcon_kit/stats_preassembly.py python2.7
  • W unusual-interpreter usr/lib/falcon/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/blocking.py python2.7
  • W unusual-interpreter usr/lib/falcon/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/fs_based.py python2.7
  • W unusual-interpreter usr/lib/falcon/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/mains/query_server.py python
  • W unusual-interpreter usr/lib/falcon/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/network_based.py python2.7
  • W unusual-interpreter usr/lib/falcon/pylib/pypeflow-1.0.0-py2.7.egg/pypeflow/do_task.py python2.7
• fast5 0.6.5-4
• fast5_0.6.5-4.dsc (main)
  • W unnecessary-team-upload
• fast5_0.6.5-4_all.deb (main)
  • W no-manual-page usr/bin/f5ls
  • W no-manual-page usr/bin/f5pack
• fasta3 36.3.8h.2020-02-11-4~0exp0simde
• fasta3_36.3.8h.2020-02-11-4~0exp0simde.dsc (main)
  • W build-depends-on-1-revision Build-Depends: libsimde-dev (>= 0.7.0~rc-1)
• fasta3_36.3.8h.2020-02-11-4~0exp0simde_amd64.deb (main)
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/annot_blast_btop3.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/annot_blast_btop4.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_genome_seq.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_protein.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_protein_sql.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_protein_sql_www.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_refseq.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_uniprot.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/get_up_prot_iso_sql.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/map_exon_coords.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/relabel_domains.py /usr/bin/python3
  • E python3-script-but-no-python3-dep usr/share/fasta3/scripts/rename_exons.py /usr/bin/python3
  • W bad-whatis-entry usr/share/man/man1/ps_lav.1.gz
  • W executable-not-elf-or-script usr/share/fasta3/scripts/color_defs.pl
  • W groff-message usr/share/man/man1/fastf3.1.gz (line 1) 35: warning: macro 'Y',' not defined
  • W groff-message usr/share/man/man1/prss3.1.gz (line 1) 54: warning: macro 'z-values'' not defined
  • W no-manual-page usr/bin/fastf36
  • W no-manual-page usr/bin/fastm36
  • W no-manual-page usr/bin/fasts36
  • W no-manual-page usr/bin/fastx36
  • W no-manual-page usr/bin/fasty36
  • W no-manual-page usr/bin/ggsearch36
  • W no-manual-page usr/bin/glsearch36
  • W no-manual-page usr/bin/lalign36
  • W no-manual-page usr/bin/ssearch36
  • W no-manual-page usr/bin/tfastf36
  • W no-manual-page usr/bin/tfastm36
  • W no-manual-page usr/bin/tfasts36
  • W no-manual-page usr/bin/tfastx36
  • W no-manual-page usr/bin/tfasty36
  • W wrong-manual-section usr/share/man/man1/map_db.1.gz:1 1 != September, 1999
• fastlink 4.1P-fix100+dfsg-4
• fastlink_4.1P-fix100+dfsg-4.dsc (main)
  • W debian-watch-not-mangling-version opts=dversionmangle=s/.*/0.No-Release/ https://people.debian.org/~eriberto/ FakeWatchNoUpstreamReleaseForThisPackage-(\d\S+)\.gz
• fastlink_4.1P-fix100+dfsg-4_amd64.deb (main)
  • W privacy-breach-generic usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/left.gif" width="130" height="45" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/left.gif)
  • W privacy-breach-generic usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif" width="125" height="1" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif)
  • W privacy-breach-generic usr/share/doc/fastlink/fastlink.html [<link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css">] (http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css)
• fastqtl 2.184+dfsg-7
• fastqtl_2.184+dfsg-7.dsc (main)
  • W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 11)
  • W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 12)
  • W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 14)
  • W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 29)
  • W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 8)
  • W uses-deprecated-adttmp debian/tests/run-sample-analysis (line 9)
• ffindex 0.9.9.9-4
• libffindex0_0.9.9.9-4_amd64.deb (main)
  • W package-name-doesnt-match-sonames libffindex2.0.2
• figtree 1.4.4-5
• figtree_1.4.4-5_all.deb (main)
  • W bad-jar-name usr/share/java/figtree.jar
• fis-gtm 6.3-014-3
• fis-gtm-6.3-014_6.3-014-3_amd64.deb (main)
  • W mismatched-override package-contains-hardlink usr/lib/*/fis-gtm/*/gtmsecshrdir/gtmsecshr -> usr/lib/*/fis-gtm/*/utf8/gtmsecshrdir/gtmsecshr
  • W mismatched-override package-contains-hardlink usr/lib/*/fis-gtm/*/gtmsecshr -> usr/lib/*/fis-gtm/*/utf8/gtmsecshr
  • W non-standard-setuid-executable-perm usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/gtmsecshrdir/gtmsecshr 4500
  • W non-standard-setuid-executable-perm usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/utf8/gtmsecshrdir/gtmsecshr 4500
  • W package-contains-hardlink usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/utf8/gtmsecshrdir/gtmsecshr -> usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/gtmsecshrdir/gtmsecshr
  • W package-contains-hardlink usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/utf8/gtmsecshr -> usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/gtmsecshr
• flash 1.2.11-2
• flash_1.2.11-2.dsc (main)
  • W no-nmu-in-changelog
  • W source-nmu-has-incorrect-version-number 1.2.11-2
• freebayes 1.3.5-1
• freebayes_1.3.5-1_amd64.deb (main)
  • W no-manual-page usr/bin/bamleftalign
  • W no-manual-page usr/bin/freebayes
• fsa 1.15.9+dfsg-6
• fsa_1.15.9+dfsg-6_amd64.deb (main)
  • W breakout-link usr/lib/debian-med/bin/translate -> usr/bin/fsa-translate
  • W breakout-link usr/lib/debian-med/share/man/man1/translate.1.gz -> usr/share/man/man1/fsa-translate.1.gz
• g2 0.72-9
• libg20_0.72-9+b1_amd64.deb (main)
  • W package-name-doesnt-match-sonames libg2-0.72
• galileo 0.5.1-7
• galileo_0.5.1-7.dsc (main)
  • W incorrect-packaging-filename debian/NEWS.Debian -> debian/NEWS
  • W superficial-tests
• galileo-daemon_0.5.1-7_all.deb (main)
  • W systemd-service-file-refers-to-unusual-wantedby-target lib/systemd/system/galileo-daemon.service network.target
• gatb-core 1.4.2+dfsg-6
• libgatbcore3_1.4.2+dfsg-6_amd64.deb (main)
  • E symbols-file-contains-current-version-with-debian-revision on symbol _ZNSt13__future_base11_Task_stateISt5_BindIFZN4gatb4core8debruijn4impl10prepare_ufILi128EEEvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPNS3_4bank5IBankEiRiiiRmmEUliE_St12_PlaceholderILi1EEEESaIiEFviEED2Ev@Base and 42 others
• gbrowse 2.56+dfsg-8
• gbrowse_2.56+dfsg-8.dsc (main)
  • E duplicate-globbing-patterns debian/copyright bin/process_ncbi_human.pl in lines 39 39
• gbrowse_2.56+dfsg-8_all.deb (main)
  • W bad-whatis-entry usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm.gz
  • W bad-whatis-entry usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::Status.3pm.gz
  • W missing-systemd-service-for-init.d-script gbrowse-aws-balancer
  • W missing-systemd-service-for-init.d-script gbrowse-slave
  • W national-encoding etc/gbrowse/languages/fr.pm
  • W national-encoding etc/gbrowse/languages/is.pm
  • W national-encoding etc/gbrowse/languages/it.pm
  • W national-encoding etc/gbrowse/languages/ja.pm
  • W national-encoding etc/gbrowse/languages/ko.pm
  • W national-encoding etc/gbrowse/languages/nl.pm
  • W no-manual-page usr/bin/gbrowse_configure_slaves
  • W recursive-privilege-change postinst:11
  • W recursive-privilege-change postinst:12
  • W recursive-privilege-change postinst:13
  • W recursive-privilege-change postinst:14
  • W recursive-privilege-change postinst:16
  • W script-not-executable etc/default/gbrowse-aws-balancer
  • W script-not-executable etc/default/gbrowse-slave
• gbrowse-data_2.56+dfsg-8_all.deb (main)
  • W recursive-privilege-change postinst:7
  • W recursive-privilege-change postinst:8
• gdcm 3.0.8-1
• gdcm_3.0.8-1.dsc (main)
  • W no-nmu-in-changelog
  • W source-nmu-has-incorrect-version-number 3.0.8-1
• libgdcm-java_3.0.8-1_amd64.deb (main)
  • W bad-jar-name usr/share/java/gdcm.jar
• libvtkgdcm-java_3.0.8-1_amd64.deb (main)
  • W bad-jar-name usr/share/java/vtkgdcm.jar
• gemma 0.98.4+dfsg-3
• gemma_0.98.4+dfsg-3_amd64.deb (main)
  • W no-manual-page usr/bin/gemma
• genometester 4.0+git20200511.91cecb5+dfsg-1
• genometester_4.0+git20200511.91cecb5+dfsg-1_amd64.deb (main)
  • W no-manual-page usr/bin/gdistribution
• gentle 1.9+cvs20100605+dfsg1-9
• gentle_1.9+cvs20100605+dfsg1-9_amd64.deb (main)
  • W national-encoding usr/share/gentle/tips_de.txt
• getdata 0.2-4
• getdata_0.2-4.dsc (main)
  • W homepage-refers-to-obsolete-debian-infrastructure http://debian-med.alioth.debian.org
• getdata_0.2-4_all.deb (main)
  • W homepage-refers-to-obsolete-debian-infrastructure http://debian-med.alioth.debian.org
• gfapy 1.1.0+dfsg-1
• python3-gfapy_1.1.0+dfsg-1+b1_amd64.deb (main)
  • W mismatched-override library-package-name-for-application usr/bin/gfapy-convert usr/bin/gfapy-mergelinear usr/bin/gfapy-validate
  • W no-manual-page usr/bin/gfapy-renumber
• ghmm 0.9~rc3-4
• ghmm_0.9~rc3-4_amd64.deb (main)
  • W breakout-link usr/lib/ghmm/bin/cluster -> usr/bin/ghmm-cluster
  • W no-manual-page usr/bin/ghmm-cluster
  • W no-manual-page usr/bin/ghmm-config
  • W no-manual-page usr/bin/HMMEd
  • W no-manual-page usr/bin/probdist
  • W no-manual-page usr/bin/scluster
  • W no-manual-page usr/bin/smix_hmm
• gifticlib 1.0.9-4
• gifti-bin_1.0.9-4_amd64.deb (main)
  • W no-manual-page usr/bin/gifti_tool
• gmap 2021-02-22+ds-1
• gmap_2021-02-22+ds-1_amd64.deb (main)
  • W no-manual-page usr/bin/gmap.avx2
  • W no-manual-page usr/bin/gmapl
  • W no-manual-page usr/bin/gmapl.avx2
  • W no-manual-page usr/bin/gmapl.nosimd
  • W no-manual-page usr/bin/gmap.nosimd
  • W no-manual-page usr/bin/gsnap.avx2
  • W no-manual-page usr/bin/gsnapl
  • W no-manual-page usr/bin/gsnapl.avx2
  • W no-manual-page usr/bin/gsnapl.nosimd
  • W no-manual-page usr/bin/gsnap.nosimd
• gnumed-client 1.8.5+dfsg-2
• gnumed-client_1.8.5+dfsg-2.dsc (main)
  • W national-encoding debian/gm-install_arriba.8
  • W superficial-tests
• graphlan 1.1.3-2
• graphlan_1.1.3-2.dsc (main)
  • W uses-deprecated-adttmp debian/tests/run-unit-test (line 22)
  • W uses-deprecated-adttmp debian/tests/run-unit-test (line 4)
  • W uses-deprecated-adttmp debian/tests/run-unit-test (line 5)
  • W uses-deprecated-adttmp debian/tests/run-unit-test (line 7)
  • W uses-deprecated-adttmp debian/tests/run-unit-test (line 8)
• gwama 2.2.2+dfsg-4
• gwama_2.2.2+dfsg-4.dsc (main)
  • W inconsistent-appstream-metadata-license debian/copyright debian/upstream/ee.geenivaramu.tools.gwama.metainfo.xml (cc0-1.0 != bsd-3-clause)
• hhsuite 3.3.0+ds-4
• hhsuite-data_3.3.0+ds-4_all.deb (main)
  • W breakout-link usr/lib/hhsuite/data/context_data.crf -> usr/share/hhsuite/data/context_data.crf
  • W breakout-link usr/lib/hhsuite/data/context_data.lib -> usr/share/hhsuite/data/context_data.lib
  • W breakout-link usr/lib/hhsuite/data/cs219.lib -> usr/share/hhsuite/data/cs219.lib
• hisat2 2.2.1-2
• python3-hisat2_2.2.1-2_all.deb (main)
  • W no-manual-page usr/bin/hisat2_extract_exons.py
  • W no-manual-page usr/bin/hisat2_extract_snps_haplotypes_UCSC.py
  • W no-manual-page usr/bin/hisat2_extract_snps_haplotypes_VCF.py
  • W no-manual-page usr/bin/hisat2_extract_splice_sites.py
• hmmer2 2.3.2+dfsg-7
• hmmer2_2.3.2+dfsg-7.dsc (main)
  • W patch-file-present-but-not-mentioned-in-series hardening.patch
• hmmer2_2.3.2+dfsg-7_amd64.deb (main)
  • W breakout-link usr/lib/hmmer2/hmmindex -> usr/bin/hmm2index
  • W breakout-link usr/lib/hmmer2/hmmpfam -> usr/bin/hmm2pfam
  • W script-uses-perl4-libs-without-dep usr/share/doc/hmmer2/examples/sqc:179 getopts.pl
  • W script-uses-perl4-libs-without-dep usr/share/doc/hmmer2/examples/sqc:180 importenv.pl
• libhmmer2-dev_2.3.2+dfsg-7_amd64.deb (main)
  • W package-name-defined-in-config-h usr/include/hmmer2/config.h
• htseq 0.13.5-1
• python3-htseq_0.13.5-1_amd64.deb (main)
  • W no-manual-page usr/bin/htseq-count-barcodes
• htsjdk 2.23.0+dfsg-2
• htsjdk_2.23.0+dfsg-2.dsc (main)
  • W patch-file-present-but-not-mentioned-in-series 50-fix-javadoc
• libhtsjdk-java-doc_2.23.0+dfsg-2_all.deb (main)
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• htslib 1.11-4
• libhts3_1.11-4_amd64.deb (main)
  • W bad-whatis-entry usr/share/man/man7/htslib-s3-plugin.7.gz
• hts-nim-tools 0.2.1-1
• hts-nim-tools_0.2.1-1_amd64.deb (main)
  • W no-manual-page usr/bin/hts_nim_tools
• hyphy 2.5.28+dfsg-3
• hyphy-mpi_2.5.28+dfsg-3_amd64.deb (main)
  • W mismatched-override typo-in-manual-page usr/share/man/man1/HYPHYMPI.1.gz gard guard
• hyphy-pt_2.5.28+dfsg-3_amd64.deb (main)
  • W mismatched-override typo-in-manual-page usr/share/man/man1/hyphy.1.gz gard guard
• icb-utils 2.0.1+git20161002.afee1d9-4
• libicb-utils-java_2.0.1+git20161002.afee1d9-4_all.deb (main)
  • W bad-jar-name usr/share/java/icb-utils.jar
• idba 1.1.3-7
• idba-extra_1.1.3-7_amd64.deb (main)
  • W no-manual-page usr/bin/fa2fq
  • W no-manual-page usr/bin/parallel_blat
  • W no-manual-page usr/bin/parallel_rna_blat
  • W no-manual-page usr/bin/print_graph
  • W no-manual-page usr/bin/raw_n50
  • W no-manual-page usr/bin/sample_reads
  • W no-manual-page usr/bin/scaffold
  • W no-manual-page usr/bin/shuffle_reads
  • W no-manual-page usr/bin/sort_psl
  • W no-manual-page usr/bin/sort_reads
  • W no-manual-page usr/bin/split_fa
  • W no-manual-page usr/bin/split_fq
  • W no-manual-page usr/bin/split_scaffold
  • W no-manual-page usr/bin/validate_component
  • W no-manual-page usr/bin/validate_contigs_blat
  • W no-manual-page usr/bin/validate_contigs_mummer
  • W no-manual-page usr/bin/validate_reads_blat
  • W no-manual-page usr/bin/validate_rna
• idseq-bench 0.0~git20200902.8241a9a-1
• idseq-bench_0.0~git20200902.8241a9a-1_all.deb (main)
  • W no-manual-page usr/bin/idseq-bench-compare
• igdiscover 0.11-3
• igdiscover-doc_0.11-3_all.deb (main)
  • W embedded-javascript-library usr/share/doc/igdiscover/html/_static/language_data.js please use sphinx
• igor 1.4.0+dfsg-2
• igor_1.4.0+dfsg-2_amd64.deb (main)
  • W no-manual-page usr/bin/igor-compute_pgen
• imagej 1.53i-1~0exp0
• imagej_1.53i-1~0exp0.dsc (main)
  • W globbing-patterns-out-of-order debian/copyright debian/extra/imagej1.png debian/* debian/extra/imagej1.png
  • W superficial-tests
• insighttoolkit4 4.12.2-dfsg1-4.1
• insighttoolkit4_4.12.2-dfsg1-4.1.dsc (main)
  • E missing-build-dependency-for-dh-addon python2 => python2:any | python2-dev:any | dh-sequence-python2
  • E missing-notice-file-for-apache-license NOTICE
  • W incorrect-packaging-filename debian/NEWS.Debian -> debian/NEWS
  • W missing-field-in-dep5-copyright debian/copyright Copyright (paragraph at line 117)
  • W missing-field-in-dep5-copyright debian/copyright Copyright (paragraph at line 215)
  • W missing-field-in-dep5-copyright debian/copyright Copyright (paragraph at line 72)
  • W missing-license-paragraph-in-dep5-copyright debian/copyright apache-2.0+vtk-copyright (line 304)
  • W package-uses-deprecated-debhelper-compat-version 9
  • W patch-file-present-but-not-mentioned-in-series castxml-define-gccxml.patch
  • W patch-file-present-but-not-mentioned-in-series fix_python_tests.diff
  • W patch-file-present-but-not-mentioned-in-series itk4.10.0_itkTriangleHelper.h.patch
  • W patch-file-present-but-not-mentioned-in-series itk4.10-correct_itkMathDetail_include-order.patch
  • W patch-file-present-but-not-mentioned-in-series vnl_complex_test_accuracy.patch
  • W space-in-std-shortname-in-dep5-copyright debian/copyright debian itk is licensed under the gpl (line 18)
  • W space-in-std-shortname-in-dep5-copyright debian/copyright public domain (line 74)
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/debian-med/insighttoolkit.git
  • W vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/debian-med/insighttoolkit.git
• intake 0.6.1-1
• python3-intake_0.6.1-1_amd64.deb (main)
  • W no-manual-page usr/bin/intake-server
• ipig 0.0.r5-4
• ipig_0.0.r5-4_amd64.deb (main)
  • W bad-jar-name usr/share/java/iPiG-0.0.r5.jar
• iva 1.0.9+ds-11
• iva_1.0.9+ds-11.dsc (main)
  • W patch-file-present-but-not-mentioned-in-series reduce-ram.patch
• iva_1.0.9+ds-11_amd64.deb (main)
  • W package-installs-java-bytecode usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class
  • W package-installs-java-bytecode usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class
  • W package-installs-java-bytecode usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class
  • W package-installs-java-bytecode usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class
  • W package-installs-java-bytecode usr/lib/python3/dist-packages/iva/gage/SizeFasta.class
  • W package-installs-java-bytecode usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class
  • W package-installs-java-bytecode usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class
  • W package-installs-java-bytecode usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class
  • W package-installs-java-bytecode usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class
  • W package-installs-java-bytecode usr/lib/python3/dist-packages/iva/gage/Utils.class
• ivar 1.3+dfsg-1
• ivar-doc_1.3+dfsg-1_all.deb (main)
  • W privacy-breach-generic usr/share/doc/ivar/html/cookbookpage.html [<img src="https://raw.githubusercontent.com/andersen-lab/ivar/master/pipeline/pipeline.png" width="500"/>] (https://raw.githubusercontent.com/andersen-lab/ivar/master/pipeline/pipeline.png)
• jam-lib 0.1.git20180106.740247a+dfsg-1
• libjam-java-doc_0.1.git20180106.740247a+dfsg-1_all.deb (main)
  • E doc-base-file-references-wrong-path libjam-java-doc:8 //usr/share/doc/libjam-java/api
  • E doc-base-file-references-wrong-path libjam-java-doc:9 //usr/share/doc/libjam-java/api/*.html
  • W embedded-javascript-library usr/share/doc/libjam-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libjam-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libjam-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjam-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjam-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjam-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• jellyfish 2.3.0-10
• jellyfish-examples_2.3.0-10_all.deb (main)
  • W breakout-link usr/lib/jellyfish/bin/jellyfish -> usr/bin/jellyfish
• libjellyfish-2.0-dev_2.3.0-10_amd64.deb (main)
  • W package-name-defined-in-config-h usr/include/jellyfish/config.h
• jheatchart 0.6-1.1
• jheatchart_0.6-1.1.dsc (main)
  • W no-newline-at-end debian/control
  • W no-nmu-in-changelog
• libjheatchart-java-doc_0.6-1.1_all.deb (main)
  • E doc-base-file-references-wrong-path libjheatchart-java-doc:8 //usr/share/doc/libjheatchart-java/api
  • E doc-base-file-references-wrong-path libjheatchart-java-doc:9 //usr/share/doc/libjheatchart-java/api/*.html
  • W embedded-javascript-library usr/share/doc/libjheatchart-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libjheatchart-java/api/jquery/jquery-3.5.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libjheatchart-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjheatchart-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjheatchart-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjheatchart-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• kalign 1:3.3-2~0exp0simde
• kalign_3.3-2~0exp0simde.dsc (main)
  • W build-depends-on-1-revision Build-Depends: libsimde-dev (>= 0.7.0~rc-1)
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• libbio-db-hts-perl 3.01-3
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• libbio-mage-perl 20030502.3-6
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• libbio-mage-utils-perl 20030502.0-5
• libbio-mage-utils-perl_20030502.0-5_all.deb (main)
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• libbio-variation-perl 1.7.5-2
• libbio-variation-perl_1.7.5-2_all.deb (main)
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• libbpp-phyl 2.4.1-4
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  • W national-encoding usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h
  • W national-encoding usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h
  • W national-encoding usr/include/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h
  • W national-encoding usr/include/Bpp/Phyl/Model/OneChangeTransitionModel.h
• libbpp-phyl-omics 2.4.1-2
• libbpp-phyl-omics3_2.4.1-2_amd64.deb (main)
  • E symbols-file-contains-current-version-with-debian-revision on symbol _ZN3bpp13NodeExceptionD0Ev@Base and 50 others
• libbpp-qt 2.4.1-4
• libbpp-qt-dev_2.4.1-4_amd64.deb (main)
  • W national-encoding usr/include/Bpp/Qt/Tree/TreeCanvasControlers.h
  • W national-encoding usr/include/Bpp/Qt/Tree/TreeCanvas.h
  • W national-encoding usr/include/Bpp/Qt/Tree/TreeStatisticsBox.h
• libbpp-seq 2.4.1-5
• libbpp-seq-dev_2.4.1-5_amd64.deb (main)
  • W national-encoding usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h
  • W national-encoding usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h
• libcereal 1.3.0+dfsg-1
• libcereal_1.3.0+dfsg-1.dsc (main)
  • W unnecessary-team-upload
• libchado-perl 1.31-6
• libchado-perl_1.31-6.dsc (main)
  • W tab-in-license-text debian/copyright (starting at line 56)
• libchado-perl_1.31-6_all.deb (main)
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• libcolt-free-java 1.2.0+dfsg-8~exp1
• libcolt-free-java-doc_1.2.0+dfsg-8~exp1_all.deb (main)
  • E doc-base-file-references-wrong-path libcolt-free-java-doc:8 //usr/share/doc/libcolt-free-java
  • E doc-base-file-references-wrong-path libcolt-free-java-doc:9 //usr/share/doc/libcolt-free-java/*.html
• libdeflate 1.7-1
• libdeflate-tools_1.7-1_amd64.deb (main)
  • W no-manual-page usr/bin/libdeflate-gunzip
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• libdisorder 0.0.2+git20130809.8062ee1-2
• libdisorder0_0.0.2+git20130809.8062ee1-2_amd64.deb (main)
  • E library-not-linked-against-libc usr/lib/x86_64-linux-gnu/libdisorder.so.0.0.0
• libdistlib-java 1.0-2
• libdistlib-java_1.0-2_all.deb (main)
  • W bad-jar-name usr/share/java/distlib.jar
• libgenome-perl 0.06-6
• libgenome-perl_0.06-6.dsc (main)
  • W no-nmu-in-changelog
  • W source-nmu-has-incorrect-version-number 0.06-6
• libgkarrays 2.1.0+dfsg-4
• libgkarrays-dev_2.1.0+dfsg-4_amd64.deb (main)
  • W national-encoding usr/include/libProgressBar-1.2.0/progressBar.h
  • W package-name-defined-in-config-h usr/include/libGkArrays-2.1.0/config.h
  • W package-name-defined-in-config-h usr/include/libProgressBar-1.2.0/config.h
• libhac-java 0.20110510-3
• libhac-java-doc_0.20110510-3_all.deb (main)
  • W embedded-javascript-library usr/share/doc/libhac-java-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libhac-java-doc/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• libhmsbeagle 3.1.2+dfsg-10
• libhmsbeagle1v5_3.1.2+dfsg-10_amd64.deb (main)
  • W lacks-unversioned-link-to-shared-library usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so
  • W shared-library-lacks-version usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so libhmsbeagle-jni.so
• libjung-free-java 2.0.1+dfsg-1.1
• libjung-free-java_2.0.1+dfsg-1.1.dsc (main)
  • W no-nmu-in-changelog
  • W package-uses-deprecated-debhelper-compat-version 9
  • W patch-file-present-but-not-mentioned-in-series use-apache-commons-collections
  • W vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/debian-med/libjung-java.git
  • W vcs-obsolete-in-debian-infrastructure Git git://anonscm.debian.org/debian-med/libjung-java.git
• libjung-free-java-doc_2.0.1+dfsg-1.1_all.deb (main)
  • E doc-base-file-references-wrong-path libjung-free-java-doc:8 //usr/share/doc/libjung-free-java/api
  • E doc-base-file-references-wrong-path libjung-free-java-doc:9 //usr/share/doc/libjung-free-java/api/*.html
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/jquery-3.5.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• libkmlframework-java 0.0.git20150825.a2e0518-1
• libkmlframework-java_0.0.git20150825.a2e0518-1.dsc (main)
  • W build-depends-on-obsolete-package Build-Depends: libservlet3.1-java => libservlet-api-java
• libla4j-java 0.6.0-2
• libla4j-java_0.6.0-2_all.deb (main)
  • W bad-jar-name usr/share/java/la4j.jar
• liblemon 1.3.1+dfsg-4
• liblemon-dev_1.3.1+dfsg-4_amd64.deb (main)
  • W national-encoding usr/include/lemon/soplex.h
• liblemon-utils_1.3.1+dfsg-4_amd64.deb (main)
  • W no-manual-page usr/bin/dimacs-solver
  • W no-manual-page usr/bin/dimacs-to-lgf
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• libmaus2 2.0.768+dfsg-1
• libmaus2-2_2.0.768+dfsg-1_amd64.deb (main)
  • W shared-library-lacks-prerequisites usr/lib/x86_64-linux-gnu/libmaus2/2.0.768/libmaus2_scram_mod.so
• libmialm 1.0.9-3
• libmialm_1.0.9-3.dsc (main)
  • W orig-tarball-missing-upstream-signature libmialm_1.0.9.orig.tar.xz
• libncl 2.1.21+git20190531.feceb81-3
• ncl-tools_2.1.21+git20190531.feceb81-3_amd64.deb (main)
  • W no-manual-page usr/bin/checktaxonnodes
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  • W no-manual-page usr/bin/otsubtree
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  • W no-manual-page usr/bin/outdeg1count
• liboptions-java 0.0.20120113-3
• liboptions-java-doc_0.0.20120113-3_all.deb (main)
  • E doc-base-file-references-wrong-path liboptions-java-doc:8 //usr/share/doc/liboptions-java/api
  • E doc-base-file-references-wrong-path liboptions-java-doc:9 //usr/share/doc/liboptions-java/api/*.html
  • W embedded-javascript-library usr/share/doc/liboptions-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/liboptions-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/liboptions-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/liboptions-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/liboptions-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/liboptions-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• libpal-java 1.5.1+dfsg-6
• libpal-java-doc_1.5.1+dfsg-6_all.deb (main)
  • W embedded-javascript-library usr/share/doc/libpal-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libpal-java/api/jquery/jquery-3.5.1.js please use libjs-jquery
  • W embedded-javascript-library usr/share/doc/libpal-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libpal-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libpal-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • W embedded-javascript-library usr/share/doc/libpal-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• librostlab 1.0.20-10
• librostlab3_1.0.20-10_amd64.deb (main)
  • W shared-library-lacks-prerequisites usr/lib/x86_64-linux-gnu/librostlab.so.3.0.0
• librostlab-blast 1.0.1-10
• librostlab-blast_1.0.1-10.dsc (main)
  • W uses-deprecated-adttmp debian/tests/installation-test (line 10)
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• libsbml 5.19.0+dfsg-1
• libsbml_5.19.0+dfsg-1.dsc (main)
  • W debian-rules-uses-supported-python-versions-without-python-all-build-depends py3versions -s (line 79)
• libsbml5-java_5.19.0+dfsg-1_amd64.deb (main)
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  • W needless-dependency-on-jre
• libseqlib 1.2.0+dfsg-4
• libseqlib_1.2.0+dfsg-4.dsc (main)
  • W no-nmu-in-changelog
  • W source-nmu-has-incorrect-version-number 1.2.0+dfsg-4
• libsis-base-java 18.09~pre1+git20180928.45fbd31+dfsg-3
• libsis-base-jni_18.09~pre1+git20180928.45fbd31+dfsg-3_amd64.deb (main)
  • W package-has-unnecessary-activation-of-ldconfig-trigger
• libsmithwaterman 0.0+git20160702.2610e25-11
• libsmithwaterman0_0.0+git20160702.2610e25-11_amd64.deb (main)
  • E symbols-file-contains-current-version-with-debian-revision on symbol _ZNSt12_Vector_baseIfSaIfEED1Ev@Base and 5 others
• libtabixpp 1.1.0-4
• libtabixpp0_1.1.0-4_amd64.deb (main)
  • E symbols-file-contains-current-version-with-debian-revision on symbol _ZNKSt5ctypeIcE8do_widenEc@Base
• libtecla 1.6.3-2.1
• libtecla_1.6.3-2.1.dsc (main)
  • W maintainer-upload-has-incorrect-version-number 1.6.3-2.1
• libtfbs-perl 0.7.1-3
• libtfbs-perl_0.7.1-3.dsc (main)
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• libtfbs-perl_0.7.1-3+b2_amd64.deb (main)
  • W bad-whatis-entry usr/share/man/man3/TFBS::SitePair.3pm.gz
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  • W pod-conversion-message usr/share/man/man3/TFBS::Matrix::Alignment.3pm.gz:196
• libvcflib 1.0.2+dfsg-2
• libvcflib-tools_1.0.2+dfsg-2_amd64.deb (main)
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• libvistaio 1.2.19-3
• libvistaio_1.2.19-3.dsc (main)
  • W orig-tarball-missing-upstream-signature libvistaio_1.2.19.orig.tar.xz
• libvistaio-dev_1.2.19-3_amd64.deb (main)
  • W national-encoding usr/include/vistaio-1.2/vistaio/vista.h
• libzerg 1.0.7-11
• libzerg0_1.0.7-11_amd64.deb (main)
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• libzerg-perl 1.0.4-8
• libzerg-perl_1.0.4-8_amd64.deb (main)
  • W national-encoding usr/lib/x86_64-linux-gnu/perl5/5.32/Zerg/Report.pm
• libzstd 1.4.8+dfsg-2.1
• libzstd_1.4.8+dfsg-2.1.dsc (main)
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• macsyfinder 2.0~rc1-3
• macsyfinder_2.0~rc1-3_amd64.deb (main)
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• mash 2.2.2+dfsg-2
• mash_2.2.2+dfsg-2.dsc (main)
  • W sphinxdoc-but-no-sphinxdoc-depends
• mauve-aligner 2.4.0+4736-4
• mauve-aligner_2.4.0+4736-4_amd64.deb (main)
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  • W no-manual-page usr/bin/mauve
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• medicalterms 20160103-5
• hunspell-de-med_20160103-5_all.deb (main)
  • W national-encoding usr/share/hunspell/de_med.dic
• metabat 2.15-3
• metabat_2.15-3_amd64.deb (main)
  • W no-manual-page usr/bin/aggregateBinDepths.pl
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• metastudent 2.0.1-8
• metastudent_2.0.1-8.dsc (main)
  • E duplicate-globbing-patterns debian/copyright metastudentPkg/lib/groupB/pp2/go/DAG.java in lines 27 27
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  • E duplicate-globbing-patterns debian/copyright metastudentPkg/lib/groupB/pp2/prediction/knn/BlastHit.java in lines 19 19
  • E duplicate-globbing-patterns debian/copyright metastudentPkg/lib/groupB/pp2/prediction/knn/BlastResultList.java in lines 19 19
  • E duplicate-globbing-patterns debian/copyright metastudentPkg/lib/groupB/pp2/prediction/knn/DAGNode.java in lines 19 19
  • E duplicate-globbing-patterns debian/copyright metastudentPkg/lib/groupB/pp2/prediction/knn/DetermineDistribution.java in lines 23 23
  • E duplicate-globbing-patterns debian/copyright metastudentPkg/lib/groupB/pp2/prediction/knn/GoNode.java in lines 19 19
  • E duplicate-globbing-patterns debian/copyright metastudentPkg/lib/groupB/pp2/prediction/knn/kNearestNeighbor.java in lines 19 19
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  • W orig-tarball-missing-upstream-signature metastudent_2.0.1.orig.tar.gz
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  • W groff-message usr/share/man/man1/mia-2dmyopgt-nonrigid.1.gz (line 1) 17: warning: macro 'Note' not defined
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  • W breakout-link usr/lib/python3/dist-packages/microbegps/data -> usr/share/microbegps/data
  • W no-manual-page usr/bin/MicrobeGPS
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• libmilib-java_1.13-1_all.deb (main)
  • W bad-jar-name usr/share/java/milib.jar
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  • W build-depends-on-1-revision Build-Depends: libsimde-dev (>= 0.7.0~rc-1)
• mmseqs2 13-45111+ds-1
• mmseqs2_13-45111+ds-1_amd64.deb (main)
  • W no-manual-page usr/bin/mmseqs-avx
  • W no-manual-page usr/bin/mmseqs-avx2
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  • W no-manual-page usr/bin/mmseqs-sse4.1
  • W no-manual-page usr/bin/mmseqs-ssse3
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  • W useless-whatis-entry usr/share/man/man1/mosdepth.1.gz
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  • W desktop-command-not-in-package usr/share/applications/mricron-npm.desktop mricron-npm
  • W hardening-no-pie usr/lib/mricron/mricron
• multiqc 1.9+dfsg-3
• multiqc_1.9+dfsg-3_all.deb (main)
  • W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/css/bootstrap.min.css -> usr/share/javascript/bootstrap/css/bootstrap.min.css
  • W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot -> usr/share/fonts-glyphicons/glyphicons-halflings-regular.eot
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  • W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf -> usr/share/fonts-glyphicons/glyphicons-halflings-regular.ttf
  • W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2 -> usr/share/fonts-glyphicons/glyphicons-halflings-regular.woff2
  • W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff -> usr/share/fonts-glyphicons/glyphicons-halflings-regular.woff
  • W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/js/packages/bootstrap.min.js -> usr/share/javascript/bootstrap/js/bootstrap.min.js
  • W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> usr/share/javascript/jquery/jquery.min.js
  • W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> usr/share/javascript/jquery-tablesorter/jquery.tablesorter.min.js
  • W breakout-link usr/lib/python3/dist-packages/multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> usr/share/javascript/jquery-ui/jquery-ui.min.js
  • W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default_dev/includes.html [<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/filesaver.js/1.3.8/filesaver.min.js">] (https://cdnjs.cloudflare.com/ajax/libs/filesaver.js/1.3.8/filesaver.min.js)
  • W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default_dev/includes.html [<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/lz-string/1.4.4/lz-string.min.js">] (https://cdnjs.cloudflare.com/ajax/libs/lz-string/1.4.4/lz-string.min.js)
  • W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://cdnjs.cloudflare.com/ajax/libs/filesaver.js/1.3.8/filesaver.min.js" type="text/javascript">] (https://cdnjs.cloudflare.com/ajax/libs/filesaver.js/1.3.8/filesaver.min.js)
  • W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery-toast-plugin/1.3.2/jquery.toast.min.js" type="text/javascript">] (https://cdnjs.cloudflare.com/ajax/libs/jquery-toast-plugin/1.3.2/jquery.toast.min.js)
  • W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://cdnjs.cloudflare.com/ajax/libs/lz-string/1.4.4/lz-string.min.js" type="text/javascript">] (https://cdnjs.cloudflare.com/ajax/libs/lz-string/1.4.4/lz-string.min.js)
  • W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://code.highcharts.com/highcharts.export-csv.js" type="text/javascript">] (https://code.highcharts.com/highcharts.export-csv.js)
  • W privacy-breach-generic usr/lib/python3/dist-packages/multiqc/templates/default/includes.html [<script src="https://code.highcharts.com/highcharts.exporting.js" type="text/javascript">] (https://code.highcharts.com/highcharts.exporting.js)
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• mypy 0.812-1
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  • W no-manual-page usr/bin/mypyc
  • W no-manual-page usr/bin/stubtest
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  • W shared-library-lacks-prerequisites usr/lib/python3/dist-packages/mypyc/common.cpython-39-x86_64-linux-gnu.so
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  • W shared-library-lacks-prerequisites usr/lib/python3/dist-packages/mypy/checker.cpython-39-x86_64-linux-gnu.so
  • W shared-library-lacks-prerequisites usr/lib/python3/dist-packages/mypy/checkexpr.cpython-39-x86_64-linux-gnu.so
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  • W shared-library-lacks-prerequisites usr/lib/python3/dist-packages/mypyc/__init__.cpython-39-x86_64-linux-gnu.so
  • W shared-library-lacks-prerequisites usr/lib/python3/dist-packages/mypyc/irbuild/builder.cpython-39-x86_64-linux-gnu.so
  • W shared-library-lacks-prerequisites usr/lib/python3/dist-packages/mypyc/irbuild/callable_class.cpython-39-x86_64-linux-gnu.so
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• nibabel 3.2.1-2
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• nipype 1.6.0-2
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  • E invalid-profile-name-in-source-relation needsrebuildorfix [Build-Depends: python3-nipy <needsrebuildorfix>]
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