Lintian Hints for People

Found 5675 issues in 478 maintained sources. To see all packaging hints, please click on the source.

abyss 2.3.4+dfsg-1

abyss_2.3.4+dfsg-1_amd64.deb (main)
- no-manual-page [usr/bin/abyss-pe]
- privacy-breach-generic [<img src="https://img.shields.io/conda/dn/bioconda/abyss?label=conda" alt="conda" />] (https://img.shields.io/conda/dn/bioconda/abyss?label=conda) [usr/share/doc/abyss/README.html]
- privacy-breach-generic [<img src="https://img.shields.io/github/downloads/bcgsc/abyss/total?logo=github" alt="downloads" />] (https://img.shields.io/github/downloads/bcgsc/abyss/total?logo=github) [usr/share/doc/abyss/README.html]
- privacy-breach-generic [<img src="https://img.shields.io/github/issues/bcgsc/abyss.svg" alt="issues" />] (https://img.shields.io/github/issues/bcgsc/abyss.svg) [usr/share/doc/abyss/README.html]
- privacy-breach-generic [<img src="https://img.shields.io/github/release/bcgsc/abyss.svg" alt="release" />] (https://img.shields.io/github/release/bcgsc/abyss.svg) [usr/share/doc/abyss/README.html]

acedb 4.9.39+dfsg.02-7

adapterremoval 2.3.2-1

adapterremoval_2.3.2-1.dsc (main)
- superfluous-file-pattern benchmark/* [debian/copyright:10]
adapterremoval_2.3.2-1_amd64.deb (main)
- privacy-breach-generic [<img src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" alt="coveralls" title="" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg) [usr/share/doc/adapterremoval/README.html]
- privacy-breach-generic [<img src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" alt="travis" title="" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg) [usr/share/doc/adapterremoval/README.html]

adun.app 0.81-14

adun.app_0.81-14.dsc (main)
- source-is-missing [UL/Resources/AdunHelp/css/genlist.html]
- source-is-missing [UL/Resources/AdunHelp/pages/basicPage.html]

aevol 5.0+ds-3

aevol_5.0+ds-3_amd64.deb (main)
- no-manual-page [usr/bin/aevol_misc_ancestor_robustness]
- no-manual-page [usr/bin/aevol_misc_mutagenesis]

alien-hunter 1.7-8

alien-hunter_1.7-8_all.deb (main)
- package-installs-java-bytecode [usr/share/alien_hunter/ChangepointLeft$1.class]
- package-installs-java-bytecode [usr/share/alien_hunter/ChangepointLeft.class]
- package-installs-java-bytecode [usr/share/alien_hunter/ChangepointRight$1.class]
- package-installs-java-bytecode [usr/share/alien_hunter/ChangepointRight.class]

allelecount 4.3.0-1.1

liballelecount-perl_4.3.0-1.1_all.deb (main)
- bad-whatis-entry [usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Sanger::CGP::AlleleCount::ToJson.3pm.gz]
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/liballelecount-perl:2]
- pod-conversion-message [usr/share/man/man3/Sanger::CGP::AlleleCount::Genotype.3pm.gz:118]
- pod-conversion-message [usr/share/man/man3/Sanger::CGP::AlleleCount::ToJson.3pm.gz:85]
- script-with-language-extension [usr/bin/alleleCounter.pl]
- script-with-language-extension [usr/bin/alleleCounterToJson.pl]

altree 1.3.2-1

altree_1.3.2-1+b1_amd64.deb (main)
- national-encoding [usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Chi2.pm]
- national-encoding [usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Import.pm]
- national-encoding [usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Input.pm]
- national-encoding [usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Node.pm]
- national-encoding [usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/SitePerForet.pm]
- national-encoding [usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/SiteSensPerTree.pm]
- national-encoding [usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/to_rewrite.pm]
- national-encoding [usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Tree.pm]

amap-align 2.2+git20080214.600fc29+dfsg-2

amap-align_2.2+git20080214.600fc29+dfsg-2_amd64.deb (main)
- executable-not-elf-or-script [usr/share/doc/amap-align/examples/BB12020.tfa.out]

amide 1.0.5-15

amide_1.0.5-15.dsc (main)
- superfluous-file-pattern Documentation [debian/copyright:62]
- superfluous-file-pattern ./src/amitk_dial.c [debian/copyright:35]
- superfluous-file-pattern ./src/amitk_dial.h [debian/copyright:35]
- superfluous-file-pattern ./src/amitk_xif_sel.c [debian/copyright:35]
- superfluous-file-pattern ./src/amitk_xif_sel.h [debian/copyright:35]

arb 6.0.6-5

arb_6.0.6-5.dsc (non-free)
- alien-tag outdated-autotools-helper-file [debian/source/lintian-overrides:2]
- source-is-missing [GDE/PHYML/usersguide_phyliplike.html]
- source-is-missing [UNIT_TESTER/run/help/unittest.html]
arb-common_6.0.6-5_all.deb (non-free)
- duplicate-changelog-files usr/share/doc/arb-common/arb_CHANGES.txt.gz usr/share/doc/arb-common/changelog.gz usr/share/doc/arb/arb_CHANGES.txt.gz
arb-doc_6.0.6-5_all.deb (non-free)
- alien-tag doc-package-should-be-section-doc [usr/share/lintian/overrides/arb-doc:6]
libarb-dev_6.0.6-5_amd64.deb (non-free)
- unpack-message-for-deb-data ar failed for usr/lib/arb/NAMES_COM/client.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/NAMES_COM/common.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/NAMES_COM/server.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/PROBE_COM/client.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/PROBE_COM/common.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/PROBE_COM/server.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/ALIVIEW/ALIVIEW.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/AP_TREE/AP_TREE.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/ARB_TREE/ARB_TREE.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/AW_HELIX/AW_HELIX.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/AW_NAME/AW_NAME.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/DB_QUERY/DB_QUERY.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/DB_SCANNER/DB_SCANNER.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/DB_UI/DB_UI.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/FAST_ALIGNER/FAST_ALIGNER.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/FILTER/FILTER.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/GUI_ALIVIEW/GUI_ALIVIEW.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/HELIX/HELIX.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/INSDEL/INSDEL.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/ITEMS/ITEMS.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/LOCATION/LOCATION.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/MACROS/MACROS.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/MATRIX/MATRIX.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/NDS/NDS.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/NEIGHBOURJOIN/NEIGHBOURJOIN.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/PRONUC/PRONUC.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/PTCLEAN/PTCLEAN.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/REFENTRIES/REFENTRIES.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/REGEXPR/REGEXPR.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/ROOTED_TREE/ROOTED_TREE.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/SEQIO/SEQIO.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/SEQUENCE/SEQUENCE.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/TRANSLATE/TRANSLATE.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/TREE_ADMIN/TREE_ADMIN.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/TREEDISP/TREEDISP.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/TREE_READ/TREE_READ.a
- unpack-message-for-deb-data ar failed for usr/lib/arb/SL/TREE_WRITE/TREE_WRITE.a
- unstripped-binary-or-object [usr/lib/arb/NAMES_COM/client.a]
- unstripped-binary-or-object [usr/lib/arb/NAMES_COM/common.a]
- unstripped-binary-or-object [usr/lib/arb/NAMES_COM/server.a]
- unstripped-binary-or-object [usr/lib/arb/PROBE_COM/client.a]
- unstripped-binary-or-object [usr/lib/arb/PROBE_COM/common.a]
- unstripped-binary-or-object [usr/lib/arb/PROBE_COM/server.a]
- unstripped-binary-or-object [usr/lib/arb/SL/ALIVIEW/ALIVIEW.a]
- unstripped-binary-or-object [usr/lib/arb/SL/AP_TREE/AP_TREE.a]
- unstripped-binary-or-object [usr/lib/arb/SL/ARB_TREE/ARB_TREE.a]
- unstripped-binary-or-object [usr/lib/arb/SL/AW_HELIX/AW_HELIX.a]
- unstripped-binary-or-object [usr/lib/arb/SL/AW_NAME/AW_NAME.a]
- unstripped-binary-or-object [usr/lib/arb/SL/DB_QUERY/DB_QUERY.a]
- unstripped-binary-or-object [usr/lib/arb/SL/DB_SCANNER/DB_SCANNER.a]
- unstripped-binary-or-object [usr/lib/arb/SL/DB_UI/DB_UI.a]
- unstripped-binary-or-object [usr/lib/arb/SL/FAST_ALIGNER/FAST_ALIGNER.a]
- unstripped-binary-or-object [usr/lib/arb/SL/FILTER/FILTER.a]
- unstripped-binary-or-object [usr/lib/arb/SL/GUI_ALIVIEW/GUI_ALIVIEW.a]
- unstripped-binary-or-object [usr/lib/arb/SL/HELIX/HELIX.a]
- unstripped-binary-or-object [usr/lib/arb/SL/INSDEL/INSDEL.a]
- unstripped-binary-or-object [usr/lib/arb/SL/ITEMS/ITEMS.a]
- unstripped-binary-or-object [usr/lib/arb/SL/LOCATION/LOCATION.a]
- unstripped-binary-or-object [usr/lib/arb/SL/MACROS/MACROS.a]
- unstripped-binary-or-object [usr/lib/arb/SL/MATRIX/MATRIX.a]
- unstripped-binary-or-object [usr/lib/arb/SL/NDS/NDS.a]
- unstripped-binary-or-object [usr/lib/arb/SL/NEIGHBOURJOIN/NEIGHBOURJOIN.a]
- unstripped-binary-or-object [usr/lib/arb/SL/PRONUC/PRONUC.a]
- unstripped-binary-or-object [usr/lib/arb/SL/PTCLEAN/PTCLEAN.a]
- unstripped-binary-or-object [usr/lib/arb/SL/REFENTRIES/REFENTRIES.a]
- unstripped-binary-or-object [usr/lib/arb/SL/REGEXPR/REGEXPR.a]
- unstripped-binary-or-object [usr/lib/arb/SL/ROOTED_TREE/ROOTED_TREE.a]
- unstripped-binary-or-object [usr/lib/arb/SL/SEQIO/SEQIO.a]
- unstripped-binary-or-object [usr/lib/arb/SL/SEQUENCE/SEQUENCE.a]
- unstripped-binary-or-object [usr/lib/arb/SL/TRANSLATE/TRANSLATE.a]
- unstripped-binary-or-object [usr/lib/arb/SL/TREE_ADMIN/TREE_ADMIN.a]
- unstripped-binary-or-object [usr/lib/arb/SL/TREEDISP/TREEDISP.a]
- unstripped-binary-or-object [usr/lib/arb/SL/TREE_READ/TREE_READ.a]
- unstripped-binary-or-object [usr/lib/arb/SL/TREE_WRITE/TREE_WRITE.a]

arden 1.0-5

artemis 18.1.0+dfsg-6

artemis_18.1.0+dfsg-6_all.deb (main)
- bad-jar-name [usr/share/java/act.jar]
- bad-jar-name [usr/share/java/artemis.jar]
- bad-jar-name [usr/share/java/bamview.jar]
- bad-jar-name [usr/share/java/dnaplotter.jar]

artfastqgenerator 0.0.20150519-4

artfastqgenerator_0.0.20150519-4.dsc (main)

assemblytics 1.2.1+dfsg-1

assemblytics_1.2.1+dfsg-1_all.deb (main)
- no-manual-page [usr/bin/Assemblytics]

ataqv 1.3.0+ds-1

ataqv_1.3.0+ds-1.dsc (main)
- source-is-missing [src/web/index.html]
ataqv_1.3.0+ds-1_amd64.deb (main)
- no-manual-page [usr/bin/make_ataqv_pipeline]
- no-manual-page [usr/bin/run_ataqv_example]

augur 13.1.0-1

augur_13.1.0-1.dsc (main)
- declare-python-versions-for-test py3versions -r [debian/tests/run-unit-test:4]
- test-leaves-python-version-untested [debian/tests/run-unit-test]
augur_13.1.0-1_all.deb (main)
- groff-message 14: warning [p 1, 2.7i]: cannot adjust line [usr/share/man/man1/augur.1.gz:2]
- groff-message 8: warning [p 1, 1.7i]: cannot adjust line [usr/share/man/man1/augur.1.gz:1]

augustus 3.4.0+dfsg2-3

augustus_3.4.0+dfsg2-3.dsc (main)
augustus-data_3.4.0+dfsg2-3_all.deb (main)
- national-encoding [usr/share/augustus/config/species/sealamprey/sealamprey_parameters.cfg]

axe-demultiplexer 0.3.3+dfsg-3

axe-demultiplexer_0.3.3+dfsg-3+b1_amd64.deb (main)
- package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/fake_0mm_R1.fq.gz]
- package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/fake_1mm_R1.fq.gz]
- package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/fake_2mm_R1.fq.gz]
- package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/gbs_R1.fastq.gz]
- package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/gbs_R2.fastq.gz]
- package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/pare.fq.gz]
- package-contains-timestamped-gzip 2021-12-03T00:08:07 [usr/share/doc/axe-demultiplexer/tests/data/pare_full.fq.gz]

bali-phy 3.6.1+dfsg-1

bali-phy_3.6.1+dfsg-1.dsc (main)
bali-phy_3.6.1+dfsg-1_amd64.deb (main)
- mismatched-override package-contains-documentation-outside-usr-share-doc usr/lib/bali-phy/help/* [usr/share/lintian/overrides/bali-phy:2]

ball 1.5.0+git20180813.37fc53c-10

ball_1.5.0+git20180813.37fc53c-10.dsc (main)
ballview_1.5.0+git20180813.37fc53c-10_amd64.deb (main)
- desktop-mime-but-no-exec-code [usr/share/applications/ballview.desktop]
libball1.5_1.5.0+git20180813.37fc53c-10_amd64.deb (main)
- lacks-unversioned-link-to-shared-library example: usr/lib/libBALL.so [usr/lib/libBALL.so.1.5]
libball1.5-data_1.5.0+git20180813.37fc53c-10_all.deb (main)
- mismatched-override package-contains-documentation-outside-usr-share-doc usr/share/BALL-1.5/BALLView/shortcuts_* [usr/share/lintian/overrides/libball1.5-data:2]
- national-encoding [usr/share/BALL-1.5/gui-test/tutorial.btf]
- national-encoding [usr/share/BALL-1.5/structures/test.btf]
libballview1.5_1.5.0+git20180813.37fc53c-10_amd64.deb (main)
- lacks-unversioned-link-to-shared-library example: usr/lib/libVIEW.so [usr/lib/libVIEW.so.1.5]
libballview1.5-dev_1.5.0+git20180813.37fc53c-10_amd64.deb (main)
- mismatched-override package-contains-empty-directory usr/lib/ [usr/share/lintian/overrides/libballview1.5-dev:2]

bamclipper 1.0.0-2

bamclipper_1.0.0-2_all.deb (main)
- debian-changelog-line-too-long [usr/share/doc/bamclipper/changelog.Debian.gz:3]
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/bamclipper:2]
- no-manual-page [usr/bin/bamclipper.sh]
- script-with-language-extension [usr/bin/bamclipper.sh]

bamkit 0.0.1+git20170413.ccd079d-3

bamkit_0.0.1+git20170413.ccd079d-3_all.deb (main)
- no-manual-page [usr/bin/sectosupp]

barrnap 0.9+dfsg-2

barrnap_0.9+dfsg-2_all.deb (main)
- alien-tag no-upstream-changelog [usr/share/lintian/overrides/barrnap:2]

bart-cuda 0.7.00-5

bart-cuda_0.7.00-5_amd64.deb (contrib)
- custom-library-search-path RUNPATH /usr/lib [usr/bin/bart]
- no-manual-page [usr/bin/bart]

bbmap 38.95+dfsg-1

bbmap_38.95+dfsg-1_all.deb (main)
- bad-jar-name [usr/share/java/bbmap.jar]

bcbio 1.2.5-1

bcbio_1.2.5-1.dsc (contrib)
- sphinxdoc-but-no-sphinxdoc-depends [debian/rules]
bcbio_1.2.5-1_all.deb (contrib)
- empty-manual-page [usr/share/man/man1/bcbio_nextgen.1.gz]
- mismatched-override script-with-language-extension usr/bin/bcbio_fastq_umi_prep.py [usr/share/lintian/overrides/bcbio:3]
- mismatched-override script-with-language-extension usr/bin/bcbio_nextgen.py [usr/share/lintian/overrides/bcbio:4]
- mismatched-override script-with-language-extension usr/bin/bcbio_prepare_samples.py [usr/share/lintian/overrides/bcbio:5]
- mismatched-override script-with-language-extension usr/bin/bcbio_setup_genome.py [usr/share/lintian/overrides/bcbio:6]
- mismatched-override script-with-language-extension usr/bin/cwltool2wdl.py [usr/share/lintian/overrides/bcbio:7]
- no-manual-page [usr/bin/bcbio_fastq_umi_prep.py]
- no-manual-page [usr/bin/bcbio_nextgen.py]
- no-manual-page [usr/bin/bcbio_prepare_samples.py]
- no-manual-page [usr/bin/bcbio_setup_genome.py]
- no-manual-page [usr/bin/cwltool2wdl.py]
- script-not-executable [usr/share/bcbio/config/examples/archived/NA12878-trio-sv-getdata.sh]
- script-not-executable [usr/share/bcbio/config/examples/cancer-dream-syn3-getdata.sh]
- script-not-executable [usr/share/bcbio/config/examples/cancer-giab-na12878-na24385-getdata.sh]
- script-not-executable [usr/share/bcbio/config/examples/giab-validate-setup.sh]
- script-not-executable [usr/share/bcbio/config/examples/HCC2218-sv-getdata.sh]
- script-not-executable [usr/share/bcbio/config/examples/NA12878-exome-methodcmp-getdata.sh]
- script-not-executable [usr/share/bcbio/config/examples/NA12878-hg38-validate-getdata.sh]
- script-not-executable [usr/share/bcbio/config/examples/NA12878-sv-getdata.sh]
- script-not-executable [usr/share/bcbio/config/examples/NA12878-trio-wgs-validate-getdata.sh]
- script-not-executable [usr/share/bcbio/config/examples/NA12878.validate.sh]
- script-not-executable [usr/share/bcbio/config/examples/NA24385-10x-getdata.sh]
- script-not-executable [usr/share/bcbio/config/examples/rnaseq-seqc-getdata.sh]
- script-not-executable [usr/share/bcbio/config/teaching/cancer-syn3-chr6-prep.sh]
- script-with-language-extension [usr/bin/bcbio_fastq_umi_prep.py]
- script-with-language-extension [usr/bin/bcbio_nextgen.py]
- script-with-language-extension [usr/bin/bcbio_prepare_samples.py]
- script-with-language-extension [usr/bin/bcbio_setup_genome.py]
- script-with-language-extension [usr/bin/cwltool2wdl.py]

bcftools 1.14-1~exp1

bcftools_1.14-1~exp1_amd64.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/bcftools:2]
- no-manual-page [usr/bin/gff2gff.py]
- no-manual-page [usr/bin/guess-ploidy.py]
- no-manual-page [usr/bin/plot-roh.py]
- no-manual-page [usr/bin/run-roh.pl]
- script-with-language-extension [usr/bin/color-chrs.pl]
- script-with-language-extension [usr/bin/gff2gff.py]
- script-with-language-extension [usr/bin/guess-ploidy.py]
- script-with-language-extension [usr/bin/plot-roh.py]
- script-with-language-extension [usr/bin/run-roh.pl]
- script-with-language-extension [usr/bin/vcfutils.pl]

beagle 5.2-210628-2

beagle_5.2-210628-2.dsc (main)
- national-encoding [debian/upstream.docs/README]
beagle-doc_5.2-210628-2_all.deb (main)
- embedded-javascript-library please use libjs-jquery [usr/share/doc/beagle/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/beagle/api/jquery/jquery-3.5.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/beagle/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/beagle/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/beagle/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/beagle/api/jquery/jquery-ui.min.js]
- mismatched-override embedded-javascript-library * please use libjs-jquery [usr/share/lintian/overrides/beagle-doc:2]
- mismatched-override embedded-javascript-library * please use libjs-jquery-ui [usr/share/lintian/overrides/beagle-doc:3]

beast-mcmc 1.10.4+dfsg-3

beast-mcmc_1.10.4+dfsg-3_all.deb (main)
- no-manual-page [usr/bin/beast-tracer]
- no-manual-page [usr/bin/loganalyser]
- no-manual-page [usr/bin/logcombiner]
- no-manual-page [usr/bin/treeannotator]
- no-manual-page [usr/bin/treestat]
libnucleotidelikelihoodcore0_1.10.4+dfsg-3_amd64.deb (main)
- shared-library-lacks-prerequisites [usr/lib/libNucleotideLikelihoodCore.so.0]

bedops 2.4.40+dfsg-1

bedops_2.4.40+dfsg-1_amd64.deb (main)
- csh-considered-harmful /bin/tcsh [usr/bin/bam2bed_gnuParallel:1]
- csh-considered-harmful /bin/tcsh [usr/bin/bam2bed_sge:1]
- csh-considered-harmful /bin/tcsh [usr/bin/bam2bed_slurm:1]
- csh-considered-harmful /bin/tcsh [usr/bin/bam2starch_gnuParallel:1]
- csh-considered-harmful /bin/tcsh [usr/bin/bam2starch_sge:1]
- csh-considered-harmful /bin/tcsh [usr/bin/bam2starch_slurm:1]
- csh-considered-harmful /bin/tcsh [usr/bin/starchcluster_gnuParallel:1]
- csh-considered-harmful /bin/tcsh [usr/bin/starchcluster_sge:1]
- csh-considered-harmful /bin/tcsh [usr/bin/starchcluster_slurm:1]
- no-manual-page [usr/bin/bam2bed_gnuParallel]
- no-manual-page [usr/bin/bam2bed_sge]
- no-manual-page [usr/bin/bam2bed_slurm]
- no-manual-page [usr/bin/bam2starch_gnuParallel]
- no-manual-page [usr/bin/bam2starch_sge]
- no-manual-page [usr/bin/bam2starch_slurm]
- no-manual-page [usr/bin/starchcluster_gnuParallel]
- no-manual-page [usr/bin/starchcluster_sge]
- no-manual-page [usr/bin/starchcluster_slurm]
- useless-whatis-entry [usr/share/man/man1/bam2bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/bam2starch.1.gz]
- useless-whatis-entry [usr/share/man/man1/bedextract.1.gz]
- useless-whatis-entry [usr/share/man/man1/bedmap.1.gz]
- useless-whatis-entry [usr/share/man/man1/bedops.1.gz]
- useless-whatis-entry [usr/share/man/man1/bedops-starch.1.gz]
- useless-whatis-entry [usr/share/man/man1/closest-features.1.gz]
- useless-whatis-entry [usr/share/man/man1/convert2bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/gff2bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/gff2starch.1.gz]
- useless-whatis-entry [usr/share/man/man1/gtf2bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/gtf2starch.1.gz]
- useless-whatis-entry [usr/share/man/man1/gvf2bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/gvf2starch.1.gz]
- useless-whatis-entry [usr/share/man/man1/psl2bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/psl2starch.1.gz]
- useless-whatis-entry [usr/share/man/man1/rmsk2bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/rmsk2starch.1.gz]
- useless-whatis-entry [usr/share/man/man1/sam2bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/sam2starch.1.gz]
- useless-whatis-entry [usr/share/man/man1/sort-bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/starchcat.1.gz]
- useless-whatis-entry [usr/share/man/man1/starch-diff.1.gz]
- useless-whatis-entry [usr/share/man/man1/starchstrip.1.gz]
- useless-whatis-entry [usr/share/man/man1/unstarch.1.gz]
- useless-whatis-entry [usr/share/man/man1/update-sort-bed-migrate-candidates.1.gz]
- useless-whatis-entry [usr/share/man/man1/update-sort-bed-slurm.1.gz]
- useless-whatis-entry [usr/share/man/man1/update-sort-bed-starch-slurm.1.gz]
- useless-whatis-entry [usr/share/man/man1/vcf2bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/vcf2starch.1.gz]
- useless-whatis-entry [usr/share/man/man1/wig2bed.1.gz]
- useless-whatis-entry [usr/share/man/man1/wig2starch.1.gz]
- zero-byte-file-in-doc-directory [usr/share/doc/bedops/tests/bedops/data/001.not-element-of.001.expected]
- zero-byte-file-in-doc-directory [usr/share/doc/bedops/tests/bedops/data/002.complement.002.expected]
- zero-byte-file-in-doc-directory [usr/share/doc/bedops/tests/bedops/data/003.intersection.003.expected]
- zero-byte-file-in-doc-directory [usr/share/doc/bedops/tests/bedops/data/004.element-of.004.expected]
- zero-byte-file-in-doc-directory [usr/share/doc/bedops/tests/bedops/data/005.symdiff.005.expected]
- zero-byte-file-in-doc-directory [usr/share/doc/bedops/tests/bedops/data/006.difference.006.expected]
- zero-byte-file-in-doc-directory [usr/share/doc/bedops/tests/bedops/data/006.union.006.expected]
- zero-byte-file-in-doc-directory [usr/share/doc/bedops/tests/bedops/data/007.difference.007.expected]
bedops-doc_2.4.40+dfsg-1_all.deb (main)
- embedded-javascript-library please use libjs-jquery [usr/share/doc/bedops/html/_static/jquery.js]
- embedded-javascript-library please use libjs-underscore [usr/share/doc/bedops/html/_static/underscore.js]
- embedded-javascript-library please use sphinx [usr/share/doc/bedops/html/_static/doctools.js]
- embedded-javascript-library please use sphinx [usr/share/doc/bedops/html/_static/language_data.js]
- embedded-javascript-library please use sphinx [usr/share/doc/bedops/html/_static/searchtools.js]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/bedops/html/content/reference/set-operations/nested-elements.html]

bedtools 2.30.0+dfsg-2

bedtools_2.30.0+dfsg-2.dsc (main)
- source-is-missing [tutorial/bedtools.html]
bedtools_2.30.0+dfsg-2_amd64.deb (main)
- no-manual-page [usr/bin/annotateBed]
- no-manual-page [usr/bin/bamToBed]
- no-manual-page [usr/bin/bamToFastq]
- no-manual-page [usr/bin/bed12ToBed6]
- no-manual-page [usr/bin/bedpeToBam]
- no-manual-page [usr/bin/bedToBam]
- no-manual-page [usr/bin/bedToIgv]
- no-manual-page [usr/bin/bedtools]
- no-manual-page [usr/bin/closestBed]
- no-manual-page [usr/bin/clusterBed]
- no-manual-page [usr/bin/complementBed]
- no-manual-page [usr/bin/coverageBed]
- no-manual-page [usr/bin/expandCols]
- no-manual-page [usr/bin/fastaFromBed]
- no-manual-page [usr/bin/flankBed]
- no-manual-page [usr/bin/genomeCoverageBed]
- no-manual-page [usr/bin/getOverlap]
- no-manual-page [usr/bin/groupBy]
- no-manual-page [usr/bin/intersectBed]
- no-manual-page [usr/bin/linksBed]
- no-manual-page [usr/bin/mapBed]
- no-manual-page [usr/bin/maskFastaFromBed]
- no-manual-page [usr/bin/mergeBed]
- no-manual-page [usr/bin/multiBamCov]
- no-manual-page [usr/bin/multiIntersectBed]
- no-manual-page [usr/bin/nucBed]
- no-manual-page [usr/bin/pairToBed]
- no-manual-page [usr/bin/pairToPair]
- no-manual-page [usr/bin/randomBed]
- no-manual-page [usr/bin/shiftBed]
- no-manual-page [usr/bin/shuffleBed]
- no-manual-page [usr/bin/slopBed]
- no-manual-page [usr/bin/sortBed]
- no-manual-page [usr/bin/subtractBed]
- no-manual-page [usr/bin/tagBam]
- no-manual-page [usr/bin/unionBedGraphs]
- no-manual-page [usr/bin/windowBed]
- no-manual-page [usr/bin/windowMaker]
bedtools-test_2.30.0+dfsg-2_all.deb (main)
- executable-not-elf-or-script [usr/share/bedtools/data/knownGene.hg18.chr21.bed]
- executable-not-elf-or-script [usr/share/bedtools/test/bamtofastq/test.sam]
- script-not-executable [usr/share/bedtools/test/bamtobed/test-bamtobed.sh]
- script-not-executable [usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh]
- script-not-executable [usr/share/bedtools/test/bedtobam/test-bedtobam.sh]
- script-not-executable [usr/share/bedtools/test/bigchroms/test-bigchroms.sh]
- script-not-executable [usr/share/bedtools/test/closest/kclosest/test-kclosest.sh]
- script-not-executable [usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh]
- script-not-executable [usr/share/bedtools/test/closest/test-closest.sh]
- script-not-executable [usr/share/bedtools/test/cluster/test-cluster.sh]
- script-not-executable [usr/share/bedtools/test/complement/test-complement.sh]
- script-not-executable [usr/share/bedtools/test/expand/test-expand.sh]
- script-not-executable [usr/share/bedtools/test/fisher/cmp.sh]
- script-not-executable [usr/share/bedtools/test/fisher/get.sh]
- script-not-executable [usr/share/bedtools/test/fisher/shuf.sh]
- script-not-executable [usr/share/bedtools/test/fisher/test-fisher.sh]
- script-not-executable [usr/share/bedtools/test/flank/test-flank.sh]
- script-not-executable [usr/share/bedtools/test/general/test-general.sh]
- script-not-executable [usr/share/bedtools/test/getfasta/test-getfasta.sh]
- script-not-executable [usr/share/bedtools/test/groupby/test-groupby.sh]
- script-not-executable [usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh]
- script-not-executable [usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh]
- script-not-executable [usr/share/bedtools/test/intersect/test-intersect.sh]
- script-not-executable [usr/share/bedtools/test/jaccard/test-jaccard.sh]
- script-not-executable [usr/share/bedtools/test/makewindows/test-makewindows.sh]
- script-not-executable [usr/share/bedtools/test/map/test-map.sh]
- script-not-executable [usr/share/bedtools/test/merge/test-merge.sh]
- script-not-executable [usr/share/bedtools/test/multicov/test-multicov.sh]
- script-not-executable [usr/share/bedtools/test/negativecontrol/test-negativecontrol.sh]
- script-not-executable [usr/share/bedtools/test/reldist/test-reldist.sh]
- script-not-executable [usr/share/bedtools/test/sample/test-sample.sh]
- script-not-executable [usr/share/bedtools/test/shift/test-shift.sh]
- script-not-executable [usr/share/bedtools/test/shuffle/test-shuffle.sh]
- script-not-executable [usr/share/bedtools/test/slop/test-slop.sh]
- script-not-executable [usr/share/bedtools/test/sort/test-sort.sh]
- script-not-executable [usr/share/bedtools/test/spacing/test-spacing.sh]
- script-not-executable [usr/share/bedtools/test/split/test-split.sh]
- script-not-executable [usr/share/bedtools/test/subtract/test-subtract.sh]

berkeley-express 1.5.3+dfsg-2

berkeley-express_1.5.3+dfsg-2.dsc (main)

biobambam2 2.0.183+ds-1

biobambam2_2.0.183+ds-1_amd64.deb (main)
- no-manual-page [usr/bin/bamdepth]
- no-manual-page [usr/bin/bamdepthintersect]
- no-manual-page [usr/bin/bamdifference]
- no-manual-page [usr/bin/bamexplode]
- no-manual-page [usr/bin/bamexploderef]
- no-manual-page [usr/bin/bamfastcat]
- no-manual-page [usr/bin/bamfastexploderef]
- no-manual-page [usr/bin/bamfastnumextract]
- no-manual-page [usr/bin/bamfastsplit]
- no-manual-page [usr/bin/bamfiltereofblocks]
- no-manual-page [usr/bin/bamfilterk]
- no-manual-page [usr/bin/bamfilterlength]
- no-manual-page [usr/bin/bamfilternames]
- no-manual-page [usr/bin/bamfilterrefid]
- no-manual-page [usr/bin/bamfixpairinfo]
- no-manual-page [usr/bin/bamintervalcommenthist]
- no-manual-page [usr/bin/bammapdist]
- no-manual-page [usr/bin/bamnumericalindex]
- no-manual-page [usr/bin/bamnumericalindexstats]
- no-manual-page [usr/bin/bamrefextract]
- no-manual-page [usr/bin/bamrefinterval]
- no-manual-page [usr/bin/bamreheader]
- no-manual-page [usr/bin/bamreplacechecksums]
- no-manual-page [usr/bin/bamscrapcount]
- no-manual-page [usr/bin/fastqtobam2]
- no-manual-page [usr/bin/populaterefcache]

biococoa 2.2.2-5

biococoa_2.2.2-5.dsc (main)
- debhelper-but-no-misc-depends libbiococoa2
- debhelper-but-no-misc-depends libbiococoa-dev
libbiococoa-dev_2.2.2-5+b1_amd64.deb (main)
- national-encoding [usr/include/GNUstep/Frameworks/BioCocoa.framework/Versions/2/BCSymbolSet.h]

biojava4-live 4.2.12+dfsg-6

libbiojava4-java-doc_4.2.12+dfsg-6_all.deb (main)
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libbiojava4-java/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libbiojava4-java/api/jquery/jquery-3.5.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libbiojava4-java/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libbiojava4-java/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libbiojava4-java/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libbiojava4-java/api/jquery/jquery-ui.min.js]
- mismatched-override embedded-javascript-library usr/share/doc/libbiojava4-java/api/jquery/* [usr/share/lintian/overrides/libbiojava4-java-doc:5]

biojava-live 1:1.7.1-9

libbiojava-java-doc_1.7.1-9_all.deb (main)
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libbiojava-java/api/jquery/jquery-3.5.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libbiojava-java/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libbiojava-java/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.js]
- national-encoding [usr/share/doc/libbiojava-java/api/org/biojava/bio/program/das/dasalignment/DASException.html]
- national-encoding [usr/share/doc/libbiojava-java/api/org/biojava/bio/structure/io/PDBParseException.html]
- national-encoding [usr/share/doc/libbiojava-java/api/org/biojava/bio/structure/StructureException.html]
libbiojava1.7-java_1.7.1-9_all.deb (main)
- bad-jar-name [usr/share/java/biojava1.7.1.jar]

biomaj3 3.1.18-2

python3-biomaj3_3.1.18-2_all.deb (main)
- executable-not-elf-or-script [usr/share/doc/python3-biomaj3/examples/tools/process/formatdb.sh]
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/python3-biomaj3:2]
- no-manual-page [usr/bin/biomaj_migrate_database.py]
- script-with-language-extension [usr/bin/biomaj_migrate_database.py]
- unknown-field Python-Egg-Name

biomaj3-cli 3.1.11-1

biomaj3-cli_3.1.11-1.dsc (main)
- debian-rules-sets-DEB_BUILD_OPTIONS [debian/rules:3]
- package-uses-deprecated-debhelper-compat-version 9
python3-biomaj3-cli_3.1.11-1_all.deb (main)
- no-manual-page [usr/bin/biomaj-cli]
- no-manual-page [usr/bin/biomaj-cli.py]
- script-with-language-extension [usr/bin/biomaj-cli.py]
- unknown-field Python-Egg-Name

biomaj3-core 3.0.26-1

biomaj3-core_3.0.26-1.dsc (main)
- declare-python-versions-for-test py3versions -r [debian/tests/run-unit-test:4]
- test-leaves-python-version-untested [debian/tests/run-unit-test]
python3-biomaj3-core_3.0.26-1_all.deb (main)
- unknown-field Python-Egg-Name

biomaj3-daemon 3.0.22-2

python3-biomaj3-daemon_3.0.22-2_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/python3-biomaj3-daemon:2]
- no-manual-page [usr/bin/biomaj-daemon-consumer]
- no-manual-page [usr/bin/biomaj_daemon_consumer.py]
- no-manual-page [usr/bin/biomaj-daemon-web]
- script-with-language-extension [usr/bin/biomaj_daemon_consumer.py]
- unknown-field Python-Egg-Name

biomaj3-download 3.2.4-1

python3-biomaj3-download_3.2.4-1_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/python3-biomaj3-download:2]
- no-manual-page [usr/bin/biomaj-download-consumer]
- no-manual-page [usr/bin/biomaj_download_consumer.py]
- no-manual-page [usr/bin/biomaj-download-web]
- script-with-language-extension [usr/bin/biomaj_download_consumer.py]

biomaj3-process 3.0.16-2

biomaj3-process_3.0.16-2.dsc (main)
- debian-rules-sets-DEB_BUILD_OPTIONS [debian/rules:3]
python3-biomaj3-process_3.0.16-2_all.deb (main)
- no-manual-page [usr/bin/biomaj-process-consumer]
- no-manual-page [usr/bin/biomaj_process_consumer.py]
- no-manual-page [usr/bin/biomaj-process-web]
- script-with-language-extension [usr/bin/biomaj_process_consumer.py]
- unknown-field Python-Egg-Name

biomaj3-user 3.0.10-1

python3-biomaj3-user_3.0.10-1_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/biomaj-users.py [usr/share/lintian/overrides/python3-biomaj3-user:2]
- no-manual-page [usr/bin/biomaj-users]
- no-manual-page [usr/bin/biomaj-users.py]
- no-manual-page [usr/bin/biomaj-users-web]
- script-with-language-extension [usr/bin/biomaj-users.py]
- unknown-field Python-Egg-Name

bioperl-run 1.7.3-7

bioperl-run_1.7.3-7_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/bp_multi_hmmsearch.pl [usr/share/lintian/overrides/bioperl-run:2]
- mismatched-override script-with-language-extension usr/bin/bp_panalysis.pl [usr/share/lintian/overrides/bioperl-run:3]
- mismatched-override script-with-language-extension usr/bin/bp_papplmaker.pl [usr/share/lintian/overrides/bioperl-run:4]
- mismatched-override script-with-language-extension usr/bin/bp_run_neighbor.pl [usr/share/lintian/overrides/bioperl-run:5]
- mismatched-override script-with-language-extension usr/bin/bp_run_protdist.pl [usr/share/lintian/overrides/bioperl-run:6]
- script-with-language-extension [usr/bin/bp_multi_hmmsearch.pl]
- script-with-language-extension [usr/bin/bp_panalysis.pl]
- script-with-language-extension [usr/bin/bp_papplmaker.pl]
- script-with-language-extension [usr/bin/bp_run_neighbor.pl]
- script-with-language-extension [usr/bin/bp_run_protdist.pl]

bio-rainbow 2.0.4+dfsg-2

bio-rainbow_2.0.4+dfsg-2.dsc (main)
- unpack-message-for-orig bio-rainbow_2.0.4+dfsg.orig.tar.xz . tar: Ignoring unknown extended header keyword 'LIBARCHIVE.creationtime'
- unpack-message-for-orig bio-rainbow_2.0.4+dfsg.orig.tar.xz . tar: Ignoring unknown extended header keyword 'SCHILY.dev'
- unpack-message-for-orig bio-rainbow_2.0.4+dfsg.orig.tar.xz . tar: Ignoring unknown extended header keyword 'SCHILY.ino'
- unpack-message-for-orig bio-rainbow_2.0.4+dfsg.orig.tar.xz . tar: Ignoring unknown extended header keyword 'SCHILY.nlink'
bio-rainbow_2.0.4+dfsg-2_amd64.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.pl [usr/share/lintian/overrides/bio-rainbow:2]
- script-with-language-extension [usr/bin/select_all_rbcontig.pl]
- script-with-language-extension [usr/bin/select_best_rbcontig.pl]
- script-with-language-extension [usr/bin/select_best_rbcontig_plus_read1.pl]
- script-with-language-extension [usr/bin/select_sec_rbcontig.pl]

biosig 2.3.3-1

biosig_2.3.3-1.dsc (main)
- configure-generated-file-in-source [config.log]
- configure-generated-file-in-source [config.status]
libbiosig-dev_2.3.3-1+b1_amd64.deb (main)
- executable-not-elf-or-script [usr/lib/x86_64-linux-gnu/pkgconfig/libbiosig.pc]

biosyntax 1.0.0b-2

biosyntax_1.0.0b-2.dsc (main)
- inconsistent-appstream-metadata-license doc/biosyntax-gedit.metainfo.xml (cc0-1.0 != gpl-3) [debian/copyright]
- inconsistent-appstream-metadata-license doc/biosyntax-vim.metainfo.xml (cc0-1.0 != gpl-3) [debian/copyright]

bio-tradis 1.4.5+dfsg2-1

bio-tradis_1.4.5+dfsg2-1_all.deb (main)
- syntax-error-in-debian-news-file "unrecognised line" [usr/share/doc/bio-tradis/NEWS.Debian.gz:3]
- syntax-error-in-debian-news-file "unrecognised line" [usr/share/doc/bio-tradis/NEWS.Debian.gz:4]
- syntax-error-in-debian-news-file "unrecognised line" [usr/share/doc/bio-tradis/NEWS.Debian.gz:5]
- syntax-error-in-debian-news-file "unrecognised line" [usr/share/doc/bio-tradis/NEWS.Debian.gz:6]
- syntax-error-in-debian-news-file "unrecognised line" [usr/share/doc/bio-tradis/NEWS.Debian.gz:8]

bitseq 0.7.5+dfsg-6

bitseq_0.7.5+dfsg-6_amd64.deb (main)
- no-manual-page [usr/bin/biocUpdate]
- no-manual-page [usr/bin/checkTR]

blasr 5.3.5+dfsg-1

blasr_5.3.5+dfsg-1+b1_amd64.deb (main)
- mismatched-override hardening-no-fortify-functions usr/bin/blasr [usr/share/lintian/overrides/blasr:2]

blimps 3.9+ds-1

blimps_3.9+ds-1.dsc (non-free)
- source-is-missing [www/help/LAMA_help.html]
blimps-examples_3.9+ds-1_amd64.deb (non-free)
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/blimps/blimps.blkprob.csh:1]
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/blimps/blimps.blksort.csh:1]
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/blimps/multimat.csh:1]
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/cobbler/cobbler.csh:1]
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/codehop/codehop.csh:1]
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/codehop/coduse.csh:1]
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/processor/calibrate.csh:1]
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/processor/process.csh:1]
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/processor/test.csh:1]
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/protomat/calibrate.csh:1]
- csh-considered-harmful /bin/csh [usr/share/doc/blimps-examples/examples/protomat/protomat.csh:1]

bmtk 0.0.9+ds-1

bmtk_0.0.9+ds-1.dsc (main)
- source-is-missing [docs/tutorial/modeling_tut_2021/Mouse_L4.html]

bowtie 1.3.1-1

bowtie_1.3.1-1.dsc (main)
- source-is-missing [doc/manual.html]
bowtie_1.3.1-1_amd64.deb (main)
- mismatched-override no-manual-page usr/bin/bowtie-align-l [usr/share/lintian/overrides/bowtie:1]
- mismatched-override no-manual-page usr/bin/bowtie-align-l-debug [usr/share/lintian/overrides/bowtie:7]
- mismatched-override no-manual-page usr/bin/bowtie-align-s [usr/share/lintian/overrides/bowtie:2]
- mismatched-override no-manual-page usr/bin/bowtie-align-s-debug [usr/share/lintian/overrides/bowtie:8]
- mismatched-override no-manual-page usr/bin/bowtie-build-l [usr/share/lintian/overrides/bowtie:3]
- mismatched-override no-manual-page usr/bin/bowtie-build-l-debug [usr/share/lintian/overrides/bowtie:9]
- mismatched-override no-manual-page usr/bin/bowtie-build-s [usr/share/lintian/overrides/bowtie:4]
- mismatched-override no-manual-page usr/bin/bowtie-build-s-debug [usr/share/lintian/overrides/bowtie:10]
- mismatched-override no-manual-page usr/bin/bowtie-inspect-l [usr/share/lintian/overrides/bowtie:5]
- mismatched-override no-manual-page usr/bin/bowtie-inspect-l-debug [usr/share/lintian/overrides/bowtie:11]
- mismatched-override no-manual-page usr/bin/bowtie-inspect-s [usr/share/lintian/overrides/bowtie:6]
- mismatched-override no-manual-page usr/bin/bowtie-inspect-s-debug [usr/share/lintian/overrides/bowtie:12]
- no-manual-page [usr/bin/bowtie-align-l]
- no-manual-page [usr/bin/bowtie-align-l-debug]
- no-manual-page [usr/bin/bowtie-align-s]
- no-manual-page [usr/bin/bowtie-align-s-debug]
- no-manual-page [usr/bin/bowtie-build-l]
- no-manual-page [usr/bin/bowtie-build-l-debug]
- no-manual-page [usr/bin/bowtie-build-s]
- no-manual-page [usr/bin/bowtie-build-s-debug]
- no-manual-page [usr/bin/bowtie-inspect-l]
- no-manual-page [usr/bin/bowtie-inspect-l-debug]
- no-manual-page [usr/bin/bowtie-inspect-s]
- no-manual-page [usr/bin/bowtie-inspect-s-debug]
bowtie-examples_1.3.1-1_all.deb (main)
- package-contains-vcs-control-file [usr/share/doc/bowtie/examples/genomes/.cvsignore]

bowtie2 2.4.4-1

bowtie2_2.4.4-1.dsc (main)
- source-is-missing [doc/manual.html]

brian 2.5.0.2-1

python-brian-doc_2.5.0.2-1_all.deb (main)
- embedded-javascript-library please use libjs-underscore [usr/share/doc/python-brian-doc/docs/_static/underscore.js]
- embedded-javascript-library please use sphinx [usr/share/doc/python-brian-doc/docs/_static/doctools.js]
- embedded-javascript-library please use sphinx [usr/share/doc/python-brian-doc/docs/_static/language_data.js]
- embedded-javascript-library please use sphinx [usr/share/doc/python-brian-doc/docs/_static/searchtools.js]
- mismatched-override embedded-javascript-library usr/share/doc/python-brian-doc/docs/_static/underscore.js please use libjs-underscore [usr/share/lintian/overrides/python-brian-doc:2]
- package-contains-vcs-control-file [usr/share/doc/python-brian-doc/examples/frompapers/.gitignore]
- package-contains-vcs-control-file [usr/share/doc/python-brian-doc/examples/standalone/.gitignore]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/advanced/functions.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/examples/advanced.exprel_function.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/examples/synapses.efficient_gaussian_connectivity.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/reference/brian2.input.binomial.BinomialFunction.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.morphology.Cylinder.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.morphology.Morphology.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/reference/brian2.spatialneuron.morphology.Section.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/reference/brian2.stateupdaters.explicit.ExplicitStateUpdater.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/reference/brian2.units.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/reference/brian2.units.unitsafefunctions.arcsin.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/reference/brian2.units.unitsafefunctions.exp.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/reference/brian2.units.unitsafefunctions.sin.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/user/converting_from_integrated_form.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/user/input.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/user/models.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/user/multicompartmental.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/user/synapses.html]
- privacy-breach-generic [<script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js">] (https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js) [usr/share/doc/python-brian-doc/docs/user/units.html]

brig 0.95+dfsg-3

brig_0.95+dfsg-3_amd64.deb (main)
- bad-jar-name [usr/share/java/BRIG-0.95.jar]
- no-manual-page [usr/bin/brig]

bustools 0.41.0+dfsg-1

bustools_0.41.0+dfsg-1_amd64.deb (main)
- useless-whatis-entry [usr/share/man/man1/bustools.1.gz]

camitk 4.1.2-4

libcamitk-dev_4.1.2-4_amd64.deb (main)
- breaks-without-version libvtk6-dev
- breaks-without-version libvtk6-java
- breaks-without-version libvtk6-jni
- breaks-without-version libvtk6-qt-dev

canu 2.0+dfsg-2

canu_2.0+dfsg-2.dsc (main)
- no-human-maintainers
- superfluous-file-pattern src/falcon_sense/* [debian/copyright:22]

cct 1:1.0.3-1

cct_1.0.3-1_all.deb (main)
- executable-not-elf-or-script [usr/share/cct/lib/scripts/assign_cogs/assign_cogs.pl]
- executable-not-elf-or-script [usr/share/cct/lib/scripts/cgview_xml_builder/cgview_xml_builder.pl]
- executable-not-elf-or-script [usr/share/cct/lib/scripts/get_cds/get_cds.pl]
- executable-not-elf-or-script [usr/share/cct/lib/scripts/get_orfs/get_orfs.pl]
- executable-not-elf-or-script [usr/share/cct/lib/scripts/local_blast_client/local_blast_client.pl]
- executable-not-elf-or-script [usr/share/cct/lib/scripts/sequence_to_multi_fasta/sequence_to_multi_fasta.pl]
- no-manual-page [usr/bin/build_cog_db]
- no-manual-page [usr/bin/check_env]
- no-manual-page [usr/bin/process_sample_projects]
- no-manual-page [usr/bin/process_test_projects]

cd-hit 4.8.1-4

cd-hit_4.8.1-4_amd64.deb (main)
- no-manual-page [usr/bin/cdhit]
- no-manual-page [usr/bin/cdhit-2d]
- no-manual-page [usr/bin/cdhit-454]
- no-manual-page [usr/bin/cdhit-est]
- no-manual-page [usr/bin/cdhit-est-2d]
- no-manual-page [usr/bin/clstr2tree]
- no-manual-page [usr/bin/clstr_merge]
- no-manual-page [usr/bin/clstr_merge_noorder]
- no-manual-page [usr/bin/clstr_reduce]
- no-manual-page [usr/bin/clstr_renumber]
- no-manual-page [usr/bin/clstr_rev]
- no-manual-page [usr/bin/clstr_sort_by]
- no-manual-page [usr/bin/clstr_sort_prot_by]
- no-manual-page [usr/bin/make_multi_seq]

centrifuge 1.0.3-10

centrifuge_1.0.3-10.dsc (main)
- source-is-missing [doc/manual.html]

cgview 0.0.20100111-7

cgview_0.0.20100111-7.dsc (main)
- source-is-missing [src/ca/ualberta/stothard/cgview/includes/overlib.js]
- mismatched-override source-is-missing src/ca/ualberta/stothard/cgview/includes/overlib.js line length is 562 characters (>512) [debian/source/lintian-overrides:2]

changeo 1.2.0-1

changeo_1.2.0-1_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/AlignRecords.py [usr/share/lintian/overrides/changeo:3]
- mismatched-override script-with-language-extension usr/bin/AssignGenes.py [usr/share/lintian/overrides/changeo:4]
- mismatched-override script-with-language-extension usr/bin/BuildTrees.py [usr/share/lintian/overrides/changeo:5]
- mismatched-override script-with-language-extension usr/bin/ConvertDb.py [usr/share/lintian/overrides/changeo:6]
- mismatched-override script-with-language-extension usr/bin/CreateGermlines.py [usr/share/lintian/overrides/changeo:7]
- mismatched-override script-with-language-extension usr/bin/DefineClones.py [usr/share/lintian/overrides/changeo:8]
- mismatched-override script-with-language-extension usr/bin/MakeDb.py [usr/share/lintian/overrides/changeo:9]
- mismatched-override script-with-language-extension usr/bin/ParseDb.py [usr/share/lintian/overrides/changeo:10]
- script-with-language-extension [usr/bin/AlignRecords.py]
- script-with-language-extension [usr/bin/AssignGenes.py]
- script-with-language-extension [usr/bin/BuildTrees.py]
- script-with-language-extension [usr/bin/ConvertDb.py]
- script-with-language-extension [usr/bin/CreateGermlines.py]
- script-with-language-extension [usr/bin/DefineClones.py]
- script-with-language-extension [usr/bin/MakeDb.py]
- script-with-language-extension [usr/bin/ParseDb.py]

chip-seq 1.5.5-3

chip-seq_1.5.5-3_amd64.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/chip-seq:2]
- no-manual-page [usr/bin/check_bed.pl]
- no-manual-page [usr/bin/chr_replace_sga.pl]
- no-manual-page [usr/bin/eland2sga.pl]
- no-manual-page [usr/bin/partit2gff.pl]
- script-with-language-extension [usr/bin/check_bed.pl]
- script-with-language-extension [usr/bin/chr_replace_sga.pl]
- script-with-language-extension [usr/bin/eland2sga.pl]
- script-with-language-extension [usr/bin/fps2sga.pl]
- script-with-language-extension [usr/bin/gff2sga.pl]
- script-with-language-extension [usr/bin/partit2bed.pl]
- script-with-language-extension [usr/bin/partit2gff.pl]
- script-with-language-extension [usr/bin/sga2fps.pl]
- script-with-language-extension [usr/bin/sga2gff.pl]

chromhmm 1.23+dfsg-1

chromhmm_1.23+dfsg-1_all.deb (main)
- bad-jar-name [usr/share/java/chromhmm.jar]

chromimpute 1.0.3+dfsg-3

chromimpute_1.0.3+dfsg-3_all.deb (main)
- bad-jar-name [usr/share/java/chromimpute.jar]

circlator 1.5.6-6

circlator_1.5.6-6.dsc (main)
- test-leaves-python-version-untested [debian/tests/run-unit-test]

circos 0.69.9+dfsg-2

circos_0.69.9+dfsg-2_all.deb (main)
- bad-whatis-entry [usr/share/man/man1/circos.1.gz]
fonts-circos-symbols_0.69.9+dfsg-2_all.deb (main)
- opentype-font-prohibits-installable-embedding (edit only) [usr/share/circos/fonts/symbols/circossymbols.otf]

clonalorigin 1.0-6

clonalorigin_1.0-6+b1_amd64.deb (main)
- no-manual-page [usr/bin/blocksplit]
- no-manual-page [usr/bin/computeMedians]
- no-manual-page [usr/bin/makeMauveWargFile]

cluster3 1.59+ds-3

cluster3_1.59+ds-3.dsc (non-free)

cmtk 3.3.1p2+dfsg-1

cmtk_3.3.1p2+dfsg-1+b1_amd64.deb (main)
- bad-whatis-entry [usr/share/man/man1/cmtk-iterative_shape_averaging.1.gz]
- groff-message 2: warning [p 1, 0.2i]: cannot adjust line [usr/share/man/man1/cmtk-iterative_shape_averaging.1.gz:1]

cnrun 2.1.0-3

cnrun_2.1.0-3.dsc (main)
- debian-rules-sets-DEB_BUILD_OPTIONS [debian/rules:6]

cnvkit 0.9.9-2

cnvkit_0.9.9-2_amd64.deb (main)
- groff-message 14: warning [p 1, 2.8i, div 'an-div', 0.0i]: cannot adjust line [usr/share/man/man1/cnvkit.1.gz:3]
- groff-message 14: warning [p 1, 2.8i, div 'an-div', 0.2i]: cannot adjust line [usr/share/man/man1/cnvkit.1.gz:4]
- groff-message 8: warning [p 1, 1.7i]: cannot adjust line [usr/share/man/man1/cnvkit.1.gz:1]
- groff-message 8: warning [p 1, 1.8i]: cannot adjust line [usr/share/man/man1/cnvkit.1.gz:2]
- no-manual-page [usr/bin/cnvkit-cnv_annotate]
- no-manual-page [usr/bin/cnvkit-cnv_expression_correlate]
- no-manual-page [usr/bin/cnvkit-cnv_updater]
- no-manual-page [usr/bin/cnvkit-genome_instability_index]
- no-manual-page [usr/bin/cnvkit-guess_baits]
- no-manual-page [usr/bin/cnvkit-skg_convert]
- no-manual-page [usr/bin/snpfilter.sh]
- script-with-language-extension [usr/bin/snpfilter.sh]

concavity 0.1+dfsg.1-5

concavity_0.1+dfsg.1-5.dsc (main)
- debian-watch-not-mangling-version opts=dversionmangle=s/.*/0.No-Release/ https://people.debian.org/~eriberto/ FakeWatchNoUpstreamReleaseForThisPackage-(\d\S+)\.gz [debian/watch:3]
- mismatched-override debian-watch-not-mangling-version line 3 [debian/source/lintian-overrides:2]

ctdconverter 2.1-4

ctdconverter_2.1-4_all.deb (main)
- groff-message 126: warning [p 2, 9.3i]: can't break line [usr/share/man/man1/CTDConverter.1.gz:2]
- groff-message 75: warning [p 2, 1.8i]: can't break line [usr/share/man/man1/CTDConverter.1.gz:1]

ctdopts 1.5-1

ctdopts_1.5-1.dsc (main)
- declare-python-versions-for-test py3versions -r [debian/tests/run-example:2]
- test-leaves-python-version-untested [debian/tests/run-example]

ctn 3.2.0~dfsg-7

ctn_3.2.0~dfsg-7_amd64.deb (main)
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/add-accession-numbers:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/create_common:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/createdirectory:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/create_icons:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/create_icons.94:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/fillImageDBScript:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/his_layout:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/icon_script:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/img_layout:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/pacs_layout:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/print_layout:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/start_clients:1]
- csh-considered-harmful /bin/csh [usr/share/doc/ctn/examples/start_img_server:1]

ctsim 6.0.2-5

ctsim-doc_6.0.2-5_all.deb (main)
- privacy-breach-generic [<link rel="stylesheet" href="http://www.ctsim.org/main.css" type="text/css">] (http://www.ctsim.org/main.css) [usr/share/doc/ctsim/examples/simulate.html]

cwlformat 2021.01.05-1

cwlformat_2021.01.05-1.dsc (main)
- declare-python-versions-for-test py3versions -r [debian/tests/run-unit-test:5]
cwlformat_2021.01.05-1_all.deb (main)
- no-manual-page [usr/bin/cwl-explode]
- no-manual-page [usr/bin/cwl-format]

cwltool 3.1.20211104071347-3

cwltool_3.1.20211104071347-3_all.deb (main)
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/reloc/test.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/subgraph/1432.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/subgraph/env-tool2.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/subgraph/env-tool2_no_env.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/subgraph/env-tool2_req.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/subgraph/env-wf2_subwf-packed.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/1496.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/811.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/816_tool.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/816_wf.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/expect_iwd-passthrough1_packed.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/expect_packed.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/expect_revsort_datetime_packed.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/expect_trick_packed.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/operation/abstract-cosifer.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/operation/expect_operation-single_packed.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/operation/operation-single.cwl]
- executable-not-elf-or-script [usr/lib/python3/dist-packages/cwltool/tests/wf/schemadef-bug-1473.cwl]
- mismatched-override executable-not-elf-or-script usr/lib/python3/dist-packages/cwltool/tests/wf/expect_trick_packed.cwl [usr/share/lintian/overrides/cwltool:5]
- mismatched-override package-contains-documentation-outside-usr-share-doc usr/lib/python3/dist-packages/cwltool/schemas/* [usr/share/lintian/overrides/cwltool:1]
- mismatched-override package-contains-documentation-outside-usr-share-doc usr/lib/python3/dist-packages/cwltool/tests/wf/hello.txt [usr/share/lintian/overrides/cwltool:2]
- mismatched-override package-contains-documentation-outside-usr-share-doc usr/lib/python3/dist-packages/cwltool/tests/wf/whale.txt [usr/share/lintian/overrides/cwltool:3]
- mismatched-override unusual-interpreter usr/lib/python3/dist-packages/cwltool/hello.simg run-singularity [usr/share/lintian/overrides/cwltool:4]
- unusual-interpreter run-singularity [usr/lib/python3/dist-packages/cwltool/hello.simg]

dcmstack 0.8-3

python3-dcmstack_0.8-3_all.deb (main)
- groff-message 139: a space character is not allowed in an escape name [usr/share/man/man1/dcmstack.1.gz:1]
- groff-message 139: a space character is not allowed in an escape name [usr/share/man/man1/dcmstack.1.gz:2]
- groff-message 37: a space character is not allowed in an escape name [usr/share/man/man1/nitool.1.gz:1]
- groff-message 37: a space character is not allowed in an escape name [usr/share/man/man1/nitool.1.gz:2]

dcmtk 3.6.6-5

dcmtk_3.6.6-5.dsc (main)
- patch-file-present-but-not-mentioned-in-series [debian/patches/02_system_charls.patch]
- patch-file-present-but-not-mentioned-in-series [debian/patches/09_charls-2.0.patch]
- superfluous-file-pattern dcmsr/include/dcmtk/dcmsr/cmr/dsrdnflt.h [debian/copyright:390]
- superfluous-file-pattern dcmsr/include/dcmtk/dcmsr/cmr/dsritcsr.h [debian/copyright:390]
- superfluous-file-pattern dcmsr/include/dcmtk/dcmsr/cmr/dsrprdcc.h [debian/copyright:390]
- superfluous-file-pattern dcmsr/include/dcmtk/dcmsr/cmr/tid1409m.h [debian/copyright:390]
- superfluous-file-pattern dcmsr/libcmr/dsrdnflt.cc [debian/copyright:390]
- superfluous-file-pattern dcmsr/libcmr/dsritcsr.cc [debian/copyright:390]
- superfluous-file-pattern dcmsr/libcmr/dsrprdcc.cc [debian/copyright:390]
- superfluous-file-pattern dcmsr/libcmr/tid1409m.cc [debian/copyright:390]
- superfluous-file-pattern dcmsr/libcmr/tid300cc.cc [debian/copyright:390]
dcmtk-doc_3.6.6-5_all.deb (main)
- syntax-error-in-debian-news-file "found eof where expected first heading" [usr/share/doc/dcmtk-doc/NEWS.Debian.gz:1]
libdcmtk-dev_3.6.6-5_amd64.deb (main)
- syntax-error-in-debian-news-file "found eof where expected first heading" [usr/share/doc/libdcmtk-dev/NEWS.Debian.gz:1]
libdcmtk16_3.6.6-5_amd64.deb (main)
- syntax-error-in-debian-news-file "found eof where expected first heading" [usr/share/doc/libdcmtk16/NEWS.Debian.gz:1]

debian-med 3.7.1

debian-med_3.7.1.dsc (main)
- upstream-metadata-in-native-source [debian/upstream/metadata]

dicompyler 0.4.2.0+git20200106.2643e0e-1

dicompyler_0.4.2.0+git20200106.2643e0e-1_all.deb (main)
- mismatched-override extra-license-file usr/share/dicompyler/dicompyler/license.txt [usr/share/lintian/overrides/dicompyler:2]
- mismatched-override package-contains-documentation-outside-usr-share-doc usr/share/dicompyler/dicompyler/license.txt [usr/share/lintian/overrides/dicompyler:3]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/baseplugins/2dview.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/baseplugins/anonymize.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/baseplugins/dvh.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/baseplugins/quickopen.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/baseplugins/treeview.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/dicomgui.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/dvhdata.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/guidvh.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/guiutil.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/__init__.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/main.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/plugin.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/preferences.py]
- unusual-interpreter python [usr/share/dicompyler/dicompyler/util.py]

dicomscope 3.6.0-23

dicomscope_3.6.0-23.dsc (main)
- source-contains-prebuilt-windows-binary [DICOMscope/tls/iheprt1.rnd]
dicomscope_3.6.0-23_all.deb (main)
- bad-jar-name [usr/share/java/DICOMscope-3.6.0.jar]

dipy 1.4.1-1

python-dipy-doc_1.4.1-1_all.deb (main)
- embedded-javascript-library please use libjs-underscore [usr/share/doc/python-dipy-doc/html/_static/underscore.js]
- embedded-javascript-library please use sphinx [usr/share/doc/python-dipy-doc/html/_static/doctools.js]
- embedded-javascript-library please use sphinx [usr/share/doc/python-dipy-doc/html/_static/language_data.js]
- embedded-javascript-library please use sphinx [usr/share/doc/python-dipy-doc/html/_static/searchtools.js]
- privacy-breach-generic [<iframe width="420" height="315" src="http://www.youtube.com/embed/kstl7kkqu94" frameborder="0" allowfullscreen>] (http://www.youtube.com/embed/kstl7kkqu94) [usr/share/doc/python-dipy-doc/html/old_highlights.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/af_l_fa.png?raw=true" style="width: 70%;" />] (https://github.com/dipy/dipy_data/blob/master/af_l_fa.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/buan_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/af_l_highlighted.png?raw=true" style="width: 70%;" />] (https://github.com/dipy/dipy_data/blob/master/af_l_highlighted.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/buan_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/af_l_rb.png?raw=true" style="width: 70%;" />] (https://github.com/dipy/dipy_data/blob/master/af_l_rb.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/bundle_segmentation_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/af_l_rb_with_model.png?raw=true" style="width: 70%;" />] (https://github.com/dipy/dipy_data/blob/master/af_l_rb_with_model.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/bundle_segmentation_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/cfin_basic1.png?raw=true" style="width: 70%;" />] (https://github.com/dipy/dipy_data/blob/master/cfin_basic1.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/basic_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/cfin_basic2.png?raw=true" style="width: 70%;" />] (https://github.com/dipy/dipy_data/blob/master/cfin_basic2.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/basic_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/cfin_basic3.png?raw=true" style="width: 70%;" />] (https://github.com/dipy/dipy_data/blob/master/cfin_basic3.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/basic_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/cst_l_highlighted.png?raw=true" style="width: 50%;" />] (https://github.com/dipy/dipy_data/blob/master/cst_l_highlighted.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/buan_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/sm_moved_uf_r__recognized.png?raw=true" style="width: 50%;" />] (https://github.com/dipy/dipy_data/blob/master/sm_moved_uf_r__recognized.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/buan_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/some_tracks.png?raw=true" style="width: 70%;" />] (https://github.com/dipy/dipy_data/blob/master/some_tracks.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/basic_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/tractograms_after_registration.png?raw=true" style="width: 70%;" />] (https://github.com/dipy/dipy_data/blob/master/tractograms_after_registration.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/bundle_segmentation_flow.html]
- privacy-breach-generic [<img alt="alternate text" src="https://github.com/dipy/dipy_data/blob/master/tractograms_initial.png?raw=true" style="width: 70%;" />] (https://github.com/dipy/dipy_data/blob/master/tractograms_initial.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/bundle_segmentation_flow.html]
- privacy-breach-generic [<img alt="image10" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/sherbrooke_denoise_nlmeans.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/sherbrooke_denoise_nlmeans.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image13" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_mppca.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_mppca.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image14" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_nlmeans.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_nlmeans.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image16" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/cfin_multib_lpca.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/cfin_multib_lpca.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image17" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/cfin_multib_denoise_mppca.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/cfin_multib_denoise_mppca.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image19" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/stanford_hardi_t1_original.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/stanford_hardi_t1_original.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image1" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/eudx_tracking.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/eudx_tracking.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/tracking_flow.html]
- privacy-breach-generic [<img alt="image1" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/stanford_hardi_original.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/stanford_hardi_original.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image1" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/t1_brain_denoised_gibbs_unringing.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/t1_brain_denoised_gibbs_unringing.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/gibbs_unringing_flow.html]
- privacy-breach-generic [<img alt="image20" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/stanford_hardi_t1_nlmeans.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/stanford_hardi_t1_nlmeans.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image2" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/deterministic_tracking.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/deterministic_tracking.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/tracking_flow.html]
- privacy-breach-generic [<img alt="image2" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_lpca.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/stanford_hardi_denoise_lpca.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image2" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/t1_brain_denoised_gibbs_unringing_after.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/t1_brain_denoised_gibbs_unringing_after.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/gibbs_unringing_flow.html]
- privacy-breach-generic [<img alt="image3" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/closest_peaks_tracking.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/closest_peaks_tracking.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/tracking_flow.html]
- privacy-breach-generic [<img alt="image3" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/sherbrooke_3shell_original.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/sherbrooke_3shell_original.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image4" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/sherbrooke_3shell_denoise_mppca.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/sherbrooke_3shell_denoise_mppca.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image5" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/cfin_multib_original.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/cfin_multib_original.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image6" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/cfin_multib_denoise_nlmeans.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/cfin_multib_denoise_nlmeans.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
- privacy-breach-generic [<img alt="image8" class="align-middle" src="https://github.com/dipy/dipy_data/blob/master/sherbrooke_denoise_lpca.png?raw=true" />] (https://github.com/dipy/dipy_data/blob/master/sherbrooke_denoise_lpca.png?raw=true) [usr/share/doc/python-dipy-doc/html/interfaces/denoise_flow.html]
python3-dipy_1.4.1-1_all.deb (main)
- no-manual-page [usr/bin/dipy_align_affine]
- no-manual-page [usr/bin/dipy_align_syn]
- no-manual-page [usr/bin/dipy_apply_transform]
- no-manual-page [usr/bin/dipy_buan_lmm]
- no-manual-page [usr/bin/dipy_buan_profiles]
- no-manual-page [usr/bin/dipy_buan_shapes]
- no-manual-page [usr/bin/dipy_denoise_lpca]
- no-manual-page [usr/bin/dipy_denoise_mppca]
- no-manual-page [usr/bin/dipy_denoise_nlmeans]
- no-manual-page [usr/bin/dipy_denoise_patch2self]
- no-manual-page [usr/bin/dipy_fetch]
- no-manual-page [usr/bin/dipy_fit_csa]
- no-manual-page [usr/bin/dipy_fit_csd]
- no-manual-page [usr/bin/dipy_fit_dki]
- no-manual-page [usr/bin/dipy_fit_dti]
- no-manual-page [usr/bin/dipy_fit_ivim]
- no-manual-page [usr/bin/dipy_fit_mapmri]
- no-manual-page [usr/bin/dipy_gibbs_ringing]
- no-manual-page [usr/bin/dipy_horizon]
- no-manual-page [usr/bin/dipy_info]
- no-manual-page [usr/bin/dipy_labelsbundles]
- no-manual-page [usr/bin/dipy_mask]
- no-manual-page [usr/bin/dipy_median_otsu]
- no-manual-page [usr/bin/dipy_recobundles]
- no-manual-page [usr/bin/dipy_reslice]
- no-manual-page [usr/bin/dipy_slr]
- no-manual-page [usr/bin/dipy_snr_in_cc]
- no-manual-page [usr/bin/dipy_split]
- no-manual-page [usr/bin/dipy_track]
- no-manual-page [usr/bin/dipy_track_pft]

discosnp 1:2.6.1-1

discosnp_2.6.1-1.dsc (main)
- superfluous-file-pattern tools/kissreads2/src/libchash.h [debian/copyright:9]
discosnp_2.6.1-1_amd64.deb (main)
- executable-not-elf-or-script [usr/share/discosnp/scripts/from_phased_alleles_to_clusters.sh]
- executable-not-elf-or-script [usr/share/discosnp/scripts/k3000/run_K3000.sh]
- mismatched-override package-contains-documentation-outside-usr-share-doc usr/share/discosnp/*/README.md [usr/share/lintian/overrides/discosnp:4]
- mismatched-override script-with-language-extension usr/bin/run_*.sh [usr/share/lintian/overrides/discosnp:2]
- no-manual-page [usr/bin/create_coverage_h5_file]
- no-manual-page [usr/bin/run_discoSnp++_ML.sh]
- script-not-executable [usr/share/discosnp/discoSnpRAD/post-processing_scripts/vcf2structure.sh]
- script-not-executable [usr/share/discosnp/scripts/simulations/multiple_samples_simulator.sh]
- script-with-language-extension [usr/bin/run_discoSnp++_ML.sh]
- script-with-language-extension [usr/bin/run_discoSnp++.sh]

dnaclust 3-7

dnaclust_3-7+b2_amd64.deb (main)
- executable-not-elf-or-script [usr/share/doc/dnaclust/examples/ebola.fasta]
- no-manual-page [usr/bin/dnaclust-abun]
- no-manual-page [usr/bin/dnaclust-ref]
- no-manual-page [usr/bin/find-large-clusters]
- no-manual-page [usr/bin/generate_test_clusters]
- no-manual-page [usr/bin/star-align]

dnapi 1.1-3

dnapi_1.1-3_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/dnapi:2]
- script-with-language-extension [usr/bin/dnapi.py]
- script-with-language-extension [usr/bin/qual_offset.py]
- script-with-language-extension [usr/bin/qual_trim.py]
- script-with-language-extension [usr/bin/to_fasta.py]

drmaa 0.7.9-2

drmaa_0.7.9-2.dsc (main)
- no-newline-at-end [debian/rules]

drop-seq 2.5.1+dfsg-1

drop-seq-testdata_2.5.1+dfsg-1_all.deb (main)
- broken-gz [usr/share/doc/drop-seq/examples/org/broadinstitute/transcriptome/barnyard/digitalexpression/dge_example1_filtered.txt.gz]
- zero-byte-file-in-doc-directory [usr/share/doc/drop-seq/examples/org/broadinstitute/transcriptome/barnyard/digitalexpression/dge_example1_filtered.txt.gz]
drop-seq-tools_2.5.1+dfsg-1_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.sh [usr/share/lintian/overrides/drop-seq-tools:2]
- no-manual-page [usr/bin/drop-seq]
- no-manual-page [usr/bin/public_clp_template.sh]
- script-with-language-extension [usr/bin/create_Drop-seq_reference_metadata.sh]
- script-with-language-extension [usr/bin/Drop-seq_alignment.sh]
- script-with-language-extension [usr/bin/public_clp_template.sh]

ea-utils 1.1.2+dfsg-9

ea-utils_1.1.2+dfsg-9.dsc (main)
- temporary-debhelper-file [debian/.debhelper/]
- debian-watch-not-mangling-version opts=dversionmangle=s/.*/0.No-Track/ https://people.debian.org/~eriberto/ FakeWatchNoUpstreamTrackingForThisPackage-(\d\S+)\.gz [debian/watch:4]
ea-utils_1.1.2+dfsg-9+b1_amd64.deb (main)
- package-contains-timestamped-gzip 2021-12-03T00:22:57 [usr/share/doc/ea-utils/examples/data.fastq.gz]

ecopcr 1.0.1+dfsg-3

ecopcr_1.0.1+dfsg-3_amd64.deb (main)
- no-manual-page [usr/bin/ecoPCRFilter]
- no-manual-page [usr/bin/ecoSort]

edfbrowser 1.90+dfsg-1

edfbrowser_1.90+dfsg-1_amd64.deb (main)
- mismatched-override spelling-error-in-binary usr/bin/edfbrowser endianess endianness [usr/share/lintian/overrides/edfbrowser:5]

edflib 1.20-1

libedf-dev_1.20-1_amd64.deb (main)
- national-encoding [usr/share/doc/libedf-dev/examples/unittest.c]

eegdev 0.2-6

eigensoft 7.2.1+dfsg-3

eigensoft_7.2.1+dfsg-3+b1_amd64.deb (main)
- no-manual-page [usr/bin/baseprog]
- no-manual-page [usr/bin/convertf]
- no-manual-page [usr/bin/eigenstrat]
- no-manual-page [usr/bin/eigenstratQTL]
- no-manual-page [usr/bin/evec2pca]
- no-manual-page [usr/bin/evec2pca-ped]
- no-manual-page [usr/bin/gc-eigensoft]
- no-manual-page [usr/bin/mergeit]
- no-manual-page [usr/bin/pca]
- no-manual-page [usr/bin/pcatoy]
- no-manual-page [usr/bin/smartpca]
- no-manual-page [usr/bin/smartrel]
- no-manual-page [usr/bin/smshrink]
- no-manual-page [usr/bin/twstats]

elastix 5.0.1-2

elastix_5.0.1-2_amd64.deb (main)
- link-to-shared-library-in-wrong-package usr/lib/x86_64-linux-gnu/libANNlib-5.0.so.1 [usr/lib/x86_64-linux-gnu/libANNlib-5.0.so]
- package-name-doesnt-match-sonames libANNlib-5.0-1

embassy-domainatrix 0.1.660-4

embassy-domainatrix_0.1.660-4.dsc (main)
- source-is-missing [emboss_doc/html/domainnr.html]
- source-is-missing [emboss_doc/html/domainsse.html]

embassy-domalign 0.1.660-4

embassy-domalign_0.1.660-4.dsc (main)
embassy-domalign_0.1.660-4_amd64.deb (main)
- custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/allversusall]
- custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/domainalign]
- custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/domainrep]
- custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/seqalign]
- mismatched-override binary-or-shlib-defines-rpath usr/bin/* /usr/lib/emboss/lib [usr/share/lintian/overrides/embassy-domalign:2]

embassy-domsearch 1:0.1.660-3

embassy-domsearch_0.1.660-3.dsc (main)
embassy-domsearch_0.1.660-3_amd64.deb (main)
- custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/seqfraggle]
- custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/seqnr]
- custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/seqsearch]
- custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/seqsort]
- custom-library-search-path RUNPATH /usr/lib/emboss/lib [usr/bin/seqwords]
- mismatched-override binary-or-shlib-defines-rpath usr/bin/* /usr/lib/emboss/lib [usr/share/lintian/overrides/embassy-domsearch:2]

emboss 6.6.0+dfsg-10

emboss-explorer 2.2.0-11

emboss-explorer_2.2.0-11_all.deb (main)
- bad-whatis-entry [usr/share/man/man1/acdcheck.1p.gz]
- bad-whatis-entry [usr/share/man/man1/mkstatic.1p.gz]
- mismatched-override non-standard-apache2-configuration-name emboss-explorer.apache2.conf != emboss-explorer.conf [usr/share/lintian/overrides/emboss-explorer:2]
- non-standard-apache2-configuration-name emboss-explorer.apache2.conf != emboss-explorer.conf [etc/apache2/conf-available/emboss-explorer.apache2.conf]
- pod-conversion-message [usr/share/man/man1/acdcheck.1p.gz:104]
- pod-conversion-message [usr/share/man/man1/mkstatic.1p.gz:107]
- recursive-privilege-change "chmod -R" [postinst:12]
- recursive-privilege-change "chown -R" [postinst:11]

emperor 1.0.3+ds-2

emperor_1.0.3+ds-2.dsc (main)
- source-is-missing [doc/index.html]
- source-is-missing [doc/tutorial_index.html]

epigrass 3.0.3+dfsg-2

epigrass_3.0.3+dfsg-2_amd64.deb (main)
- national-encoding [usr/share/doc/epigrass/demos/sitios2.csv]

estscan 3.0.3-6

estscan_3.0.3-6.dsc (main)
- superfluous-file-pattern debian/tests/data [debian/copyright:18]
estscan_3.0.3-6_amd64.deb (main)
- no-manual-page [usr/bin/estscan]
- no-manual-page [usr/bin/evaluate_model]
- no-manual-page [usr/bin/extract_EST]
- no-manual-page [usr/bin/extract_UG_EST]
- no-manual-page [usr/bin/makesmat]
- no-manual-page [usr/bin/maskred]
- no-manual-page [usr/bin/prepare_data]
- no-manual-page [usr/bin/winsegshuffle]

examl 3.0.22-3

examl_3.0.22-3_amd64.deb (main)
- no-manual-page [usr/bin/examl-OMP]

falcon 1.8.8-1

falcon_1.8.8-1.dsc (main)
- missing-build-dependency-for-dh-addon python2 (does not satisfy python2:any | python2-dev:any | dh-sequence-python2:any) [debian/rules]
- source-is-missing [pypeFLOW/presentation/pypeFLOW_tutorial.html]
- package-uses-deprecated-debhelper-compat-version 9
- vcs-obsolete-in-debian-infrastructure Browser https://anonscm.debian.org/cgit/debian-med/falcon.git
- vcs-obsolete-in-debian-infrastructure Git https://anonscm.debian.org/git/debian-med/falcon.git
falcon_1.8.8-1_amd64.deb (main)
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/falcon-task]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_actg_coordinate]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_actg_coordinate.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_calc_cutoff]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_consensus]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_consensus.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_contig_annotate]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_contig_annotate.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_ctg_link_analysis]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_ctg_link_analysis.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_dedup_a_tigs]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_dedup_a_tigs.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_fasta2fasta]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_fetch_reads]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_get_read_ctg_map]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_graph_to_contig]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_graph_to_contig.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_graph_to_utgs]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_graph_to_utgs.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_ovlp_filter]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_ovlp_filter.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_ovlp_stats]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_ovlp_stats.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_ovlp_to_graph]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_ovlp_to_graph.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_pr_ctg_track]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_rr_ctg_track]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_run]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_run1]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/fc_run.py]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/heartbeat-wrapper]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/pwatcher-main]
- script-uses-unversioned-python-in-shebang [usr/lib/falcon/bin/pwatcher-pypeflow-example]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_actg_coordinate.py]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_consensus.py]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_contig_annotate.py]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_ctg_link_analysis.py]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_dedup_a_tigs.py]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_graph_to_contig.py]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_graph_to_utgs.py]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_ovlp_filter.py]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_ovlp_stats.py]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_ovlp_to_graph.py]
- executable-not-elf-or-script [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/EGG-INFO/scripts/fc_run.py]
- executable-not-elf-or-script [usr/share/doc/falcon/examples/run/greg200k-sv2/fc_run.cfg]
- mismatched-override executable-not-elf-or-script usr/lib/falcon/pylib/falcon_kit-*.egg/EGG-INFO/scripts/* [usr/share/lintian/overrides/falcon:4]
- unusual-interpreter python [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/falcon_kit/mains/LAmerge.py]
- unusual-interpreter python [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/falcon_kit/mains/LAsort.py]
- unusual-interpreter python [usr/lib/falcon/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/mains/query_server.py]
- unusual-interpreter python2.7 [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/falcon_kit/mains/fasta2fasta.py]
- unusual-interpreter python2.7 [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/falcon_kit/mains/report_pre_assembly.py]
- unusual-interpreter python2.7 [usr/lib/falcon/pylib/falcon_kit-0.7-py2.7-linux-x86_64.egg/falcon_kit/stats_preassembly.py]
- unusual-interpreter python2.7 [usr/lib/falcon/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/blocking.py]
- unusual-interpreter python2.7 [usr/lib/falcon/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/fs_based.py]
- unusual-interpreter python2.7 [usr/lib/falcon/pylib/pypeflow-1.0.0-py2.7.egg/pwatcher/network_based.py]
- unusual-interpreter python2.7 [usr/lib/falcon/pylib/pypeflow-1.0.0-py2.7.egg/pypeflow/do_task.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/falcon-task]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_actg_coordinate]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_actg_coordinate.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_calc_cutoff]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_consensus]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_consensus.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_contig_annotate]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_contig_annotate.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_ctg_link_analysis]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_ctg_link_analysis.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_dedup_a_tigs]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_dedup_a_tigs.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_fasta2fasta]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_fetch_reads]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_get_read_ctg_map]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_graph_to_contig]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_graph_to_contig.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_graph_to_utgs]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_graph_to_utgs.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_ovlp_filter]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_ovlp_filter.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_ovlp_stats]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_ovlp_stats.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_ovlp_to_graph]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_ovlp_to_graph.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_pr_ctg_track]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_rr_ctg_track]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_run]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_run1]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/fc_run.py]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/heartbeat-wrapper]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/pwatcher-main]
- unusual-interpreter /usr/bin/python [usr/lib/falcon/bin/pwatcher-pypeflow-example]

fast5 0.6.5-6

fast5_0.6.5-6_all.deb (main)
- no-manual-page [usr/bin/f5ls]
- no-manual-page [usr/bin/f5pack]

fasta3 36.3.8h.2020-02-11-4

fasta3_36.3.8h.2020-02-11-4_amd64.deb (main)
- bad-whatis-entry [usr/share/man/man1/ps_lav.1.gz]
- executable-not-elf-or-script [usr/share/fasta3/scripts/color_defs.pl]
- groff-message 35: warning: macro 'Y',' not defined [usr/share/man/man1/fastf3.1.gz:1]
- groff-message 54: warning: macro 'z-values'' not defined [usr/share/man/man1/prss3.1.gz:1]
- no-manual-page [usr/bin/fastf36]
- no-manual-page [usr/bin/fastm36]
- no-manual-page [usr/bin/fasts36]
- no-manual-page [usr/bin/fastx36]
- no-manual-page [usr/bin/fasty36]
- no-manual-page [usr/bin/ggsearch36]
- no-manual-page [usr/bin/glsearch36]
- no-manual-page [usr/bin/lalign36]
- no-manual-page [usr/bin/ssearch36]
- no-manual-page [usr/bin/tfastf36]
- no-manual-page [usr/bin/tfastm36]
- no-manual-page [usr/bin/tfasts36]
- no-manual-page [usr/bin/tfastx36]
- no-manual-page [usr/bin/tfasty36]
- wrong-manual-section 1 != September, 1999 [usr/share/man/man1/map_db.1.gz:1]

fastlink 4.1P-fix100+dfsg-4

fastlink_4.1P-fix100+dfsg-4.dsc (main)
- debian-watch-not-mangling-version opts=dversionmangle=s/.*/0.No-Release/ https://people.debian.org/~eriberto/ FakeWatchNoUpstreamReleaseForThisPackage-(\d\S+)\.gz [debian/watch:4]
fastlink_4.1P-fix100+dfsg-4_amd64.deb (main)
- privacy-breach-generic [<img src="http://www.ncbi.nlm.nih.gov/corehtml/left.gif" width="130" height="45" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/left.gif) [usr/share/doc/fastlink/fastlink.html]
- privacy-breach-generic [<img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif" width="125" height="1" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif) [usr/share/doc/fastlink/fastlink.html]
- privacy-breach-generic [<link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css">] (http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css) [usr/share/doc/fastlink/fastlink.html]

fastqtl 2.184+dfsg-8

fastqtl_2.184+dfsg-8.dsc (main)
- source-is-missing [doc/pages/install.html]
fastqtl_2.184+dfsg-8+b1_amd64.deb (main)
- mismatched-override typo-in-manual-page usr/share/man/man1/fastQTL.1.gz line 140 Buil Build [usr/share/lintian/overrides/fastqtl:3]

fermi-lite 0.1+git20190320.b499514-1

libfml0_0.1+git20190320.b499514-1+b1_amd64.deb (main)
- symbols-file-contains-current-version-with-debian-revision on symbol fm_verbose@Base and 1 others (libfml.so.0) [symbols]

ffindex 0.9.9.9-5

libffindex0_0.9.9.9-5_amd64.deb (main)
- package-name-doesnt-match-sonames libffindex2.0.2

figtree 1.4.4-5

figtree_1.4.4-5_all.deb (main)
- bad-jar-name [usr/share/java/figtree.jar]

fis-gtm 6.3-014-3

fis-gtm-6.3-014_6.3-014-3_amd64.deb (main)
- elevated-privileges 4500 root/root [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/gtmsecshrdir/gtmsecshr]
- elevated-privileges 4500 root/root [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/utf8/gtmsecshrdir/gtmsecshr]
- elevated-privileges 4755 root/root [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/gtmsecshr]
- elevated-privileges 4755 root/root [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/utf8/gtmsecshr]
- executable-is-not-world-readable 4500 [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/gtmsecshrdir/gtmsecshr]
- executable-is-not-world-readable 4500 [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/utf8/gtmsecshrdir/gtmsecshr]
- mismatched-override executable-is-not-world-readable usr/lib/*/fis-gtm/*/gtmsecshrdir/gtmsecshr 4500 [usr/share/lintian/overrides/fis-gtm-6.3-014:4]
- mismatched-override non-standard-dir-perm usr/lib/*/fis-gtm/*/gtmsecshrdir/ 0500 != 0755 [usr/share/lintian/overrides/fis-gtm-6.3-014:6]
- mismatched-override package-contains-hardlink usr/lib/*/fis-gtm/*/gtmsecshrdir/gtmsecshr -> usr/lib/*/fis-gtm/*/utf8/gtmsecshrdir/gtmsecshr [usr/share/lintian/overrides/fis-gtm-6.3-014:8]
- mismatched-override package-contains-hardlink usr/lib/*/fis-gtm/*/gtmsecshr -> usr/lib/*/fis-gtm/*/utf8/gtmsecshr [usr/share/lintian/overrides/fis-gtm-6.3-014:7]
- mismatched-override setuid-binary usr/lib/*/fis-gtm/*/gtmsecshr 4755 root/root [usr/share/lintian/overrides/fis-gtm-6.3-014:5]
- mismatched-override setuid-binary usr/lib/*/fis-gtm/*/gtmsecshrdir/gtmsecshr 4500 root/root [usr/share/lintian/overrides/fis-gtm-6.3-014:3]
- mismatched-override shared-lib-without-dependency-information usr/lib/*/fis-gtm/*/libgtmutil.so [usr/share/lintian/overrides/fis-gtm-6.3-014:1]
- non-standard-dir-perm 0500 != 0755 [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/gtmsecshrdir/]
- non-standard-setuid-executable-perm 4500 [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/gtmsecshrdir/gtmsecshr]
- non-standard-setuid-executable-perm 4500 [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/utf8/gtmsecshrdir/gtmsecshr]
- package-contains-hardlink pointing to: usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/gtmsecshr [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/utf8/gtmsecshr]
- package-contains-hardlink pointing to: usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/gtmsecshrdir/gtmsecshr [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/utf8/gtmsecshrdir/gtmsecshr]
- shared-library-lacks-prerequisites [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/libgtmutil.so]
- shared-library-lacks-prerequisites [usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-014_x86_64/utf8/libgtmutil.so]

flash 1.2.11-2

flash_1.2.11-2.dsc (main)
- no-nmu-in-changelog [debian/changelog:1]
- source-nmu-has-incorrect-version-number 1.2.11-2 [debian/changelog:1]

flexbar 1:3.5.0-4

flexbar_3.5.0-4_amd64.deb (main)
- mismatched-override compressed-duplicate usr/share/doc/flexbar/examples/* [usr/share/lintian/overrides/flexbar:2]

freebayes 1.3.5-3

freebayes_1.3.5-3_amd64.deb (main)
- no-manual-page [usr/bin/bamleftalign]
- no-manual-page [usr/bin/freebayes]

g2 0.72-10

g2_0.72-10.dsc (main)
- source-is-missing [doc/html/group__color.html]
- source-is-missing [doc/html/index.html]
libg20_0.72-10_amd64.deb (main)
- package-name-doesnt-match-sonames libg2-0.72

galileo 0.5.1-8

galileo-daemon_0.5.1-8_all.deb (main)
- systemd-service-file-refers-to-unusual-wantedby-target network.target [usr/lib/systemd/system/galileo-daemon.service]

gbrowse 2.56+dfsg-9

gbrowse_2.56+dfsg-9_all.deb (main)
- bad-whatis-entry [usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::Status.3pm.gz]
- mismatched-override script-not-executable etc/gbrowse/MobyServices/GbrowseServices.pm [usr/share/lintian/overrides/gbrowse:1]
- missing-systemd-service-for-init.d-script gbrowse-aws-balancer [etc/init.d/gbrowse-aws-balancer]
- missing-systemd-service-for-init.d-script gbrowse-slave [etc/init.d/gbrowse-slave]
- national-encoding [etc/gbrowse/languages/fr.pm]
- national-encoding [etc/gbrowse/languages/is.pm]
- national-encoding [etc/gbrowse/languages/it.pm]
- national-encoding [etc/gbrowse/languages/ja.pm]
- national-encoding [etc/gbrowse/languages/ko.pm]
- national-encoding [etc/gbrowse/languages/nl.pm]
- no-manual-page [usr/bin/gbrowse_configure_slaves]
- recursive-privilege-change "chmod -R" [postinst:12]
- recursive-privilege-change "chmod -R" [postinst:14]
- recursive-privilege-change "chown -R" [postinst:11]
- recursive-privilege-change "chown -R" [postinst:13]
- recursive-privilege-change "chown -R" [postinst:16]
- script-not-executable [etc/default/gbrowse-aws-balancer]
- script-not-executable [etc/default/gbrowse-slave]
- script-not-executable [etc/gbrowse/MobyServices/GbrowseServices.pm]
gbrowse-data_2.56+dfsg-9_all.deb (main)
- recursive-privilege-change "chmod -R" [postinst:8]
- recursive-privilege-change "chown -R" [postinst:7]

gdcm 3.0.10-1

gdcm_3.0.10-1.dsc (main)
- superfluous-file-pattern Utilities/C99/* [debian/copyright:156]
- superfluous-file-pattern Utilities/gdcmcharls/jpegimagedatasegment.h [debian/copyright:183]
- superfluous-file-pattern Utilities/gdcmcharls/jpegmarkersegment.cpp [debian/copyright:183]
- superfluous-file-pattern Utilities/gdcmcharls/jpegmarkersegment.h [debian/copyright:183]
- superfluous-file-pattern Utilities/gdcmcharls/jpegsegment.h [debian/copyright:183]
- superfluous-file-pattern Utilities/gdcmcharls/jpegstreamwriter.cpp [debian/copyright:183]
- superfluous-file-pattern Utilities/gdcmcharls/jpegstreamwriter.h [debian/copyright:183]
libgdcm-java_3.0.10-1_amd64.deb (main)
- bad-jar-name [usr/share/java/gdcm.jar]
libgdcm-tools_3.0.10-1_amd64.deb (main)
- mismatched-override embedded-library usr/bin/gdcmpap3: libjpeg [usr/share/lintian/overrides/libgdcm-tools:5]
libvtkgdcm-java_3.0.10-1_amd64.deb (main)
- bad-jar-name [usr/share/java/vtkgdcm.jar]

gemma 0.98.5+dfsg-1

gemma_0.98.5+dfsg-1+b1_amd64.deb (main)
- no-manual-page [usr/bin/gemma]

genometester 4.0+git20200511.91cecb5+dfsg-1

genometester_4.0+git20200511.91cecb5+dfsg-1_amd64.deb (main)
- no-manual-page [usr/bin/gdistribution]

genometools 1.6.2+ds-2

genometools_1.6.2+ds-2.dsc (main)

gentle 1.9+cvs20100605+dfsg1-9

gentle_1.9+cvs20100605+dfsg1-9.dsc (main)
- source-is-missing [help/de_ligation.htm]
- source-is-missing [help/de_vector.htm]
gentle_1.9+cvs20100605+dfsg1-9_amd64.deb (main)
- national-encoding [usr/share/gentle/tips_de.txt]

getdata 0.2-4

getdata_0.2-4.dsc (main)
- homepage-refers-to-obsolete-debian-infrastructure http://debian-med.alioth.debian.org
getdata_0.2-4_all.deb (main)
- homepage-refers-to-obsolete-debian-infrastructure http://debian-med.alioth.debian.org

gfapy 1.2.1+dfsg-1

python3-gfapy_1.2.1+dfsg-1_amd64.deb (main)
- mismatched-override library-package-name-for-application usr/bin/gfapy-* [usr/share/lintian/overrides/python3-gfapy:2]

gff2aplot 2.0-14

gff2aplot_2.0-14_amd64.deb (main)
- spelling-error-in-changelog upsream upstream [usr/share/doc/gff2aplot/changelog.Debian.gz]

ghmm 0.9~rc3-4

ghmm_0.9~rc3-4_amd64.deb (main)
- no-manual-page [usr/bin/ghmm-cluster]
- no-manual-page [usr/bin/ghmm-config]
- no-manual-page [usr/bin/HMMEd]
- no-manual-page [usr/bin/probdist]
- no-manual-page [usr/bin/scluster]
- no-manual-page [usr/bin/smix_hmm]

gifticlib 1.0.9-4

gifti-bin_1.0.9-4_amd64.deb (main)
- no-manual-page [usr/bin/gifti_tool]

glam2 1064-9

glam2_1064-9.dsc (main)
- source-is-missing [doc/glam2_tut.html]

gmap 2021-12-17+ds-1

gmap_2021-12-17+ds-1_amd64.deb (main)
- mismatched-override spelling-error-in-binary usr/lib/gmap/gmap* ofO of [usr/share/lintian/overrides/gmap:1]
- no-manual-page [usr/bin/gmap.avx2]
- no-manual-page [usr/bin/gmapl]
- no-manual-page [usr/bin/gmapl.avx2]
- no-manual-page [usr/bin/gmapl.nosimd]
- no-manual-page [usr/bin/gmap.nosimd]
- no-manual-page [usr/bin/gsnap.avx2]
- no-manual-page [usr/bin/gsnapl]
- no-manual-page [usr/bin/gsnapl.avx2]
- no-manual-page [usr/bin/gsnapl.nosimd]
- no-manual-page [usr/bin/gsnap.nosimd]

gnumed-client 1.8.6+dfsg-1

gnumed-client_1.8.6+dfsg-1.dsc (main)

gnumed-server 22.16-2

gnumed-server_22.16-2.dsc (main)
- source-is-missing [server/doc/schema/gnumed-entire_schema.html]

grinder 0.5.4-6

grinder_0.5.4-6.dsc (main)
- source-is-missing [README.htm]

gubbins 2.4.1-4

gubbins_2.4.1-4_amd64.deb (main)
- link-to-shared-library-in-wrong-package usr/lib/x86_64-linux-gnu/libgubbins.so.0.0.1 [usr/lib/x86_64-linux-gnu/libgubbins.so]
- mismatched-override non-dev-pkg-with-shlib-symlink usr/lib/*/libgubbins.so.* usr/lib/*/libgubbins.so [usr/share/lintian/overrides/gubbins:2]

gwama 2.2.2+dfsg-4

gwama_2.2.2+dfsg-4.dsc (main)
- inconsistent-appstream-metadata-license debian/upstream/ee.geenivaramu.tools.gwama.metainfo.xml (cc0-1.0 != bsd-3-clause) [debian/copyright]

gwyddion 2.60-1

heudiconv 0.10.0-1

heudiconv_0.10.0-1_all.deb (main)
- no-manual-page [usr/bin/heudiconv_monitor]

hhsuite 3.3.0+ds-6

hhsuite_3.3.0+ds-6_amd64.deb (main)
- no-manual-page [usr/bin/a3m_database_extract]
- no-manual-page [usr/bin/a3m_database_filter]
- no-manual-page [usr/bin/a3m_database_reduce]
- no-manual-page [usr/bin/a3m_extract]
- no-manual-page [usr/bin/a3m_reduce]
- no-manual-page [usr/bin/ffindex_apply]
- no-manual-page [usr/bin/ffindex_build]
- no-manual-page [usr/bin/ffindex_from_fasta]
- no-manual-page [usr/bin/ffindex_from_fasta_with_split]
- no-manual-page [usr/bin/ffindex_get]
- no-manual-page [usr/bin/ffindex_modify]
- no-manual-page [usr/bin/ffindex_order]
- no-manual-page [usr/bin/ffindex_reduce]
- no-manual-page [usr/bin/ffindex_unpack]
- no-manual-page [usr/bin/hhalign_omp]
- no-manual-page [usr/bin/hhblits_ca3m]
- no-manual-page [usr/bin/hhsearch_omp]

hilive 2.0a-3

hilive_2.0a-3+b2_amd64.deb (main)
- package-contains-timestamped-gzip 2020-12-12T09:34:36 [usr/share/doc/hilive/tutorial/BaseCalls.tar.gz]

hisat2 2.2.1-3

hisat2_2.2.1-3.dsc (main)
- source-is-missing [docs/_includes/share-buttons.html]
- source-is-missing [docs_jhu/manual.inc.html]
- mismatched-override source-is-missing docs/_includes/share-buttons.html line * [debian/source/lintian-overrides:2]
python3-hisat2_2.2.1-3_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/python3-hisat2:2]
- no-manual-page [usr/bin/hisat2_extract_exons.py]
- no-manual-page [usr/bin/hisat2_extract_snps_haplotypes_UCSC.py]
- no-manual-page [usr/bin/hisat2_extract_snps_haplotypes_VCF.py]
- no-manual-page [usr/bin/hisat2_extract_splice_sites.py]
- script-with-language-extension [usr/bin/hisat2_extract_exons.py]
- script-with-language-extension [usr/bin/hisat2_extract_snps_haplotypes_UCSC.py]
- script-with-language-extension [usr/bin/hisat2_extract_snps_haplotypes_VCF.py]
- script-with-language-extension [usr/bin/hisat2_extract_splice_sites.py]

hmmer2 2.3.2+dfsg-7

hmmer2_2.3.2+dfsg-7.dsc (main)
- patch-file-present-but-not-mentioned-in-series [debian/patches/hardening.patch]
hmmer2_2.3.2+dfsg-7_amd64.deb (main)
- script-uses-perl4-libs-without-dep (does not satisfy libperl4-corelibs-perl:any | perl:any (<< 5.12.3-7)) getopts.pl [usr/share/doc/hmmer2/examples/sqc:179]
- script-uses-perl4-libs-without-dep (does not satisfy libperl4-corelibs-perl:any | perl:any (<< 5.12.3-7)) importenv.pl [usr/share/doc/hmmer2/examples/sqc:180]
libhmmer2-dev_2.3.2+dfsg-7_amd64.deb (main)
- package-name-defined-in-config-h usr/include/hmmer2/config.h

hnswlib 0.6.0-1

hnswlib_0.6.0-1.dsc (main)
- test-leaves-python-version-untested [debian/tests/run-unit-test]

htscodecs 1.1.1-3

htscodecs_1.1.1-3.dsc (main)
- patch-file-present-but-not-mentioned-in-series [debian/patches/big-endian]
- patch-file-present-but-not-mentioned-in-series [debian/patches/ship_varint_h]

htseq 1.99.2-1

python3-htseq_1.99.2-1_amd64.deb (main)
- no-manual-page [usr/bin/htseq-count-barcodes]

htsjdk 2.24.1+dfsg-1

libhtsjdk-java-doc_2.24.1+dfsg-1_all.deb (main)
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libhtsjdk-java-doc/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-3.5.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libhtsjdk-java-doc/api/jquery/jquery-ui.min.js]
- mismatched-override embedded-javascript-library usr/share/doc/libhtsjdk-java-doc/api/*/jquery*.*s * [usr/share/lintian/overrides/libhtsjdk-java-doc:4]

htslib 1.14+ds-1~exp1

htslib-test_1.14+ds-1~exp1_all.deb (main)
- mismatched-override compressed-duplicate usr/share/htslib-test/test/bgziptest.txt.gz [usr/share/lintian/overrides/htslib-test:2]
libhts-dev_1.14+ds-1~exp1_amd64.deb (main)
- no-code-sections [usr/lib/x86_64-linux-gnu/libhts.a]
libhts3_1.14+ds-1~exp1_amd64.deb (main)
- symbols-file-contains-current-version-with-debian-revision on symbol bam_mods_at_next_pos@Base and 7 others (libhts.so.3) [symbols]
- bad-whatis-entry [usr/share/man/man7/htslib-s3-plugin.7.gz]

hts-nim-tools 0.2.1-1

hts-nim-tools_0.2.1-1_amd64.deb (main)
- mismatched-override useless-whatis-entry usr/share/man/man1/hts-nim-tools.1.gz [usr/share/lintian/overrides/hts-nim-tools:2]
- no-manual-page [usr/bin/hts_nim_tools]
- useless-whatis-entry [usr/share/man/man1/hts-nim-tools.1.gz]

hyphy 2.5.33+dfsg-1

hyphy-common_2.5.33+dfsg-1_all.deb (main)
- mismatched-override package-contains-documentation-outside-usr-share-doc usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md [usr/share/lintian/overrides/hyphy-common:1]
hyphy-mpi_2.5.33+dfsg-1_amd64.deb (main)
- mismatched-override typo-in-manual-page usr/share/man/man1/HYPHYMPI.1.gz gard guard [usr/share/lintian/overrides/hyphy-mpi:1]
hyphy-pt_2.5.33+dfsg-1_amd64.deb (main)
- mismatched-override typo-in-manual-page usr/share/man/man1/hyphy.1.gz gard guard [usr/share/lintian/overrides/hyphy-pt:1]

icb-utils 2.0.1+git20161002.afee1d9-5

libicb-utils-java_2.0.1+git20161002.afee1d9-5_all.deb (main)
- bad-jar-name [usr/share/java/icb-utils.jar]

idba 1.1.3-7

idba-extra_1.1.3-7_amd64.deb (main)
- no-manual-page [usr/bin/fa2fq]
- no-manual-page [usr/bin/parallel_blat]
- no-manual-page [usr/bin/parallel_rna_blat]
- no-manual-page [usr/bin/print_graph]
- no-manual-page [usr/bin/raw_n50]
- no-manual-page [usr/bin/sample_reads]
- no-manual-page [usr/bin/scaffold]
- no-manual-page [usr/bin/shuffle_reads]
- no-manual-page [usr/bin/sort_psl]
- no-manual-page [usr/bin/sort_reads]
- no-manual-page [usr/bin/split_fa]
- no-manual-page [usr/bin/split_fq]
- no-manual-page [usr/bin/split_scaffold]
- no-manual-page [usr/bin/validate_component]
- no-manual-page [usr/bin/validate_contigs_blat]
- no-manual-page [usr/bin/validate_contigs_mummer]
- no-manual-page [usr/bin/validate_reads_blat]
- no-manual-page [usr/bin/validate_rna]

idseq-bench 0.0~git20210602.27fb6dc-1

idseq-bench_0.0~git20210602.27fb6dc-1.dsc (main)
- test-leaves-python-version-untested [debian/tests/run-unit-test]
idseq-bench_0.0~git20210602.27fb6dc-1_all.deb (main)
- no-manual-page [usr/bin/idseq-bench-compare]

igdiscover 0.11-3

igdiscover-doc_0.11-3_all.deb (main)
- embedded-javascript-library usr/share/doc/igdiscover/html/_static/language_data.js please use sphinx

igor 1.4.0+dfsg-3

igor_1.4.0+dfsg-3.dsc (main)
- source-is-missing [docs/index.html]
igor_1.4.0+dfsg-3+b1_amd64.deb (main)
- no-manual-page [usr/bin/igor-compute_pgen]

igraph 0.9.6+ds-2

libigraph-dev_0.9.6+ds-2_amd64.deb (main)
- no-code-sections [usr/lib/x86_64-linux-gnu/libigraph.a]

illustrate 0.0+git20200923.217db48-2

illustrate_0.0+git20200923.217db48-2_amd64.deb (main)
- no-manual-page [usr/bin/illustrate]

indelible 1.03-5

indelible_1.03-5.dsc (main)
- source-is-missing [help/index.html]

insighttoolkit4 4.13.3withdata-dfsg1-4.1

insighttoolkit4_4.13.3withdata-dfsg1-4.1.dsc (main)
- missing-notice-file-for-apache-license [NOTICE]
libinsighttoolkit4-dev_4.13.3withdata-dfsg1-4.1_amd64.deb (main)
- no-manual-page [usr/bin/itkTestDriver]
libinsighttoolkit4.13_4.13.3withdata-dfsg1-4.1_amd64.deb (main)
- breaks-without-version libinsighttoolkit4.12

insighttoolkit5 5.2.1-3

insighttoolkit5_5.2.1-3.dsc (main)
- source-is-missing [Utilities/Doxygen/workbox-sw.prod.v2.0.1.js]
- source-is-missing [Utilities/Maintenance/DownloadLinksCookieCutter/{{cookiecutter.output_directory}}/ReleaseDownloadLinks.html]
- invalid-short-name-in-dep5-copyright bsd [debian/copyright:115]
- mismatched-override source-is-missing Utilities/Doxygen/workbox-sw.prod.v2.0.1.js [debian/source/lintian-overrides:14]
libinsighttoolkit5-dev_5.2.1-3_amd64.deb (main)
- mismatched-override no-manual-page usr/bin/itkTestDriver [usr/share/lintian/overrides/libinsighttoolkit5-dev:1]
- no-manual-page [usr/bin/itkTestDriver]

ipig 0.0.r5-4

ipig_0.0.r5-4_amd64.deb (main)
- bad-jar-name [usr/share/java/iPiG-0.0.r5.jar]

ismrmrd 1.4.2.1-6

ismrmrd-tools_1.4.2.1-6_amd64.deb (main)
- mismatched-override no-manual-page usr/bin/ismrmrd_generate_cartesian_shepp_logan [usr/share/lintian/overrides/ismrmrd-tools:1]
- mismatched-override no-manual-page usr/bin/ismrmrd_info [usr/share/lintian/overrides/ismrmrd-tools:2]
- mismatched-override no-manual-page usr/bin/ismrmrd_read_timing_test [usr/share/lintian/overrides/ismrmrd-tools:3]
- mismatched-override no-manual-page usr/bin/ismrmrd_recon_cartesian_2d [usr/share/lintian/overrides/ismrmrd-tools:4]
- mismatched-override no-manual-page usr/bin/ismrmrd_test_xml [usr/share/lintian/overrides/ismrmrd-tools:5]
- no-manual-page [usr/bin/ismrmrd_generate_cartesian_shepp_logan]
- no-manual-page [usr/bin/ismrmrd_info]
- no-manual-page [usr/bin/ismrmrd_read_timing_test]
- no-manual-page [usr/bin/ismrmrd_recon_cartesian_2d]
- no-manual-page [usr/bin/ismrmrd_test_xml]

iva 1.0.11+ds-1

iva_1.0.11+ds-1.dsc (main)
- patch-file-present-but-not-mentioned-in-series [debian/patches/reduce-ram.patch]
iva_1.0.11+ds-1_amd64.deb (main)
- package-installs-java-bytecode [usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class]
- package-installs-java-bytecode [usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class]
- package-installs-java-bytecode [usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class]
- package-installs-java-bytecode [usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class]
- package-installs-java-bytecode [usr/lib/python3/dist-packages/iva/gage/SizeFasta.class]
- package-installs-java-bytecode [usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class]
- package-installs-java-bytecode [usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class]
- package-installs-java-bytecode [usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class]
- package-installs-java-bytecode [usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class]
- package-installs-java-bytecode [usr/lib/python3/dist-packages/iva/gage/Utils.class]

ivar 1.3.1+dfsg-4

ivar_1.3.1+dfsg-4.dsc (main)

jam-lib 0.1.git20180106.740247a+dfsg-1

libjam-java-doc_0.1.git20180106.740247a+dfsg-1_all.deb (main)
- doc-base-file-references-wrong-path //usr/share/doc/libjam-java/api [usr/share/doc-base/libjam-java-doc:8]
- doc-base-file-references-wrong-path //usr/share/doc/libjam-java/api/*.html [usr/share/doc-base/libjam-java-doc:9]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libjam-java/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libjam-java/api/jquery/jquery-3.3.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjam-java/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjam-java/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjam-java/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjam-java/api/jquery/jquery-ui.min.js]

jebl2 0.1+git20201011.969bd4b-1

libjebl2-java-doc_0.1+git20201011.969bd4b-1_all.deb (main)
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libjebl2-java/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libjebl2-java/api/jquery/jquery-3.3.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjebl2-java/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjebl2-java/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjebl2-java/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjebl2-java/api/jquery/jquery-ui.min.js]
- mismatched-override embedded-javascript-library usr/share/doc/libjebl2-java/api/*/jquery*.*s * [usr/share/lintian/overrides/libjebl2-java-doc:4]

jellyfish 2.3.0-12

libjellyfish-2.0-2_2.3.0-12+b1_amd64.deb (main)
- mismatched-override no-symbols-control-file .* [usr/share/lintian/overrides/libjellyfish-2.0-2:2]
libjellyfish-2.0-dev_2.3.0-12+b1_amd64.deb (main)
- package-name-defined-in-config-h usr/include/jellyfish/config.h

jheatchart 0.6-1.1

jheatchart_0.6-1.1.dsc (main)
- no-newline-at-end [debian/control]
- no-nmu-in-changelog [debian/changelog:1]
libjheatchart-java-doc_0.6-1.1_all.deb (main)
- doc-base-file-references-wrong-path //usr/share/doc/libjheatchart-java/api [usr/share/doc-base/libjheatchart-java-doc:8]
- doc-base-file-references-wrong-path //usr/share/doc/libjheatchart-java/api/*.html [usr/share/doc-base/libjheatchart-java-doc:9]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libjheatchart-java/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libjheatchart-java/api/jquery/jquery-3.5.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjheatchart-java/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjheatchart-java/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjheatchart-java/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjheatchart-java/api/jquery/jquery-ui.min.js]

jmodeltest 2.1.10+dfsg-11

jmodeltest_2.1.10+dfsg-11_all.deb (main)
- mismatched-override no-manual-page usr/bin/runjmodeltest-cluster [usr/share/lintian/overrides/jmodeltest:2]
- no-manual-page [usr/bin/runjmodeltest-cluster]

kallisto 0.48.0+dfsg-1

kallisto_0.48.0+dfsg-1_amd64.deb (main)
- no-manual-page [usr/bin/kallisto]

kaptive 0.7.3-4

kaptive_0.7.3-4_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/kaptive:2]
- script-with-language-extension [usr/bin/kaptive.py]

khmer 2.1.2+dfsg-10

khmer_2.1.2+dfsg-10.dsc (main)
- inconsistent-appstream-metadata-license debian/khmer.metainfo.xml (mit != bsd-3-clause) [debian/copyright]
khmer_2.1.2+dfsg-10_amd64.deb (main)
- broken-bz2 [usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.truncated.bz2]
- broken-bz2 [usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa.bz2]
- broken-gz [usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.truncated.gz]
- mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.bz2 [usr/share/lintian/overrides/khmer:3]
- mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.gz [usr/share/lintian/overrides/khmer:4]
- mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k12.ht.gz [usr/share/lintian/overrides/khmer:5]
- mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.bz2 [usr/share/lintian/overrides/khmer:6]
- mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.gz [usr/share/lintian/overrides/khmer:7]
- mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.bz2 [usr/share/lintian/overrides/khmer:8]
- mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.gz [usr/share/lintian/overrides/khmer:9]
- mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.bz2 [usr/share/lintian/overrides/khmer:10]
- mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.gz [usr/share/lintian/overrides/khmer:11]
- mismatched-override compressed-duplicate usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa.bz2 [usr/share/lintian/overrides/khmer:12]

kineticstools 0.6.1+git20210811.276ca9c+dfsg-1

python3-kineticstools_0.6.1+git20210811.276ca9c+dfsg-1_amd64.deb (main)
- shared-library-lacks-prerequisites [usr/lib/python3/dist-packages/kineticsTools/tree_predict.cpython-39-x86_64-linux-gnu.so]

king 2.23.161103+dfsg2-1

king_2.23.161103+dfsg2-1.dsc (main)

king-probe 02.18-2

king-probe_02.18-2.dsc (main)
- missing-field-in-dep5-copyright Copyright [debian/copyright:13]
- missing-field-in-dep5-copyright Copyright [debian/copyright:16]
- missing-field-in-dep5-copyright License [debian/copyright:13]
- missing-field-in-dep5-copyright License [debian/copyright:16]

kissplice 2.5.4+dfsg-1

kissplice_2.5.4+dfsg-1.dsc (main)
- mismatched-override debian-watch-uses-insecure-uri http://kissplice.prabi.fr/download/index.php [debian/source/lintian-overrides:2]

klustakwik 3.0.2+ds-2

klustakwik_3.0.2+ds-2.dsc (main)
- debian-watch-not-mangling-version http://sf.net/klustakwik/KlustaKwik-(.*)\.tar\.bz2 [debian/watch:2]
klustakwik_3.0.2+ds-2_amd64.deb (main)
- mismatched-override no-manual-page usr/bin/KlustaKwik [usr/share/lintian/overrides/klustakwik:3]
- no-manual-page [usr/bin/KlustaKwik]

kraken 1.1.1-3

kraken_1.1.1-3.dsc (main)
- source-is-missing [docs/MANUAL.html]

kraken2 2.1.2-1

kraken2_2.1.2-1.dsc (main)
- source-is-missing [docs/MANUAL.html]

lagan 2.0-6

lagan_2.0-6_amd64.deb (main)
- mismatched-override binary-without-manpage usr/bin/anal_gloc.pl [usr/share/lintian/overrides/lagan:10]
- mismatched-override binary-without-manpage usr/bin/anchors [usr/share/lintian/overrides/lagan:11]
- mismatched-override binary-without-manpage usr/bin/glocal [usr/share/lintian/overrides/lagan:13]
- mismatched-override binary-without-manpage usr/bin/lagan_chaos [usr/share/lintian/overrides/lagan:12]
- mismatched-override binary-without-manpage usr/bin/lagan.pl [usr/share/lintian/overrides/lagan:14]
- mismatched-override binary-without-manpage usr/bin/order [usr/share/lintian/overrides/lagan:15]
- mismatched-override binary-without-manpage usr/bin/prolagan [usr/share/lintian/overrides/lagan:16]
- mismatched-override binary-without-manpage usr/bin/rechaos.pl [usr/share/lintian/overrides/lagan:17]
- mismatched-override binary-without-manpage usr/bin/slagan-mfa.pl [usr/share/lintian/overrides/lagan:18]
- mismatched-override binary-without-manpage usr/bin/slagan.pl [usr/share/lintian/overrides/lagan:19]
- mismatched-override binary-without-manpage usr/bin/supermap.pl [usr/share/lintian/overrides/lagan:20]
- mismatched-override binary-without-manpage usr/bin/xmfa2mfa.pl [usr/share/lintian/overrides/lagan:21]
- mismatched-override script-with-language-extension usr/bin/anal_gloc.pl [usr/share/lintian/overrides/lagan:3]
- mismatched-override script-with-language-extension usr/bin/lagan.pl [usr/share/lintian/overrides/lagan:4]
- mismatched-override script-with-language-extension usr/bin/rechaos.pl [usr/share/lintian/overrides/lagan:5]
- mismatched-override script-with-language-extension usr/bin/slagan-mfa.pl [usr/share/lintian/overrides/lagan:6]
- mismatched-override script-with-language-extension usr/bin/slagan.pl [usr/share/lintian/overrides/lagan:7]
- mismatched-override script-with-language-extension usr/bin/supermap.pl [usr/share/lintian/overrides/lagan:8]
- mismatched-override script-with-language-extension usr/bin/xmfa2mfa.pl [usr/share/lintian/overrides/lagan:9]
- no-manual-page [usr/bin/anal_gloc.pl]
- no-manual-page [usr/bin/anchors]
- no-manual-page [usr/bin/glocal]
- no-manual-page [usr/bin/lagan_chaos]
- no-manual-page [usr/bin/lagan.pl]
- no-manual-page [usr/bin/order]
- no-manual-page [usr/bin/prolagan]
- no-manual-page [usr/bin/rechaos.pl]
- no-manual-page [usr/bin/slagan-mfa.pl]
- no-manual-page [usr/bin/slagan.pl]
- no-manual-page [usr/bin/supermap.pl]
- no-manual-page [usr/bin/xmfa2mfa.pl]
- script-with-language-extension [usr/bin/anal_gloc.pl]
- script-with-language-extension [usr/bin/lagan.pl]
- script-with-language-extension [usr/bin/rechaos.pl]
- script-with-language-extension [usr/bin/slagan-mfa.pl]
- script-with-language-extension [usr/bin/slagan.pl]
- script-with-language-extension [usr/bin/supermap.pl]
- script-with-language-extension [usr/bin/xmfa2mfa.pl]

lamarc 2.1.10.1+dfsg-6

lamarc_2.1.10.1+dfsg-6.dsc (main)
lamarc_2.1.10.1+dfsg-6_amd64.deb (main)
- no-manual-page [usr/bin/lamarc]
- no-manual-page [usr/bin/lam_conv]

last-align 1257-2

last-align_1257-2_amd64.deb (main)
- mismatched-override no-manual-page usr/bin/lastdb5 [usr/share/lintian/overrides/last-align:4]
- mismatched-override no-manual-page usr/bin/parallel-fasta [usr/share/lintian/overrides/last-align:5]
- mismatched-override no-manual-page usr/bin/parallel-fastq [usr/share/lintian/overrides/last-align:6]
- mismatched-override useless-whatis-entry usr/share/man/man1/maf-cut.1.gz [usr/share/lintian/overrides/last-align:2]
- no-manual-page [usr/bin/lastdb5]
- no-manual-page [usr/bin/parallel-fasta]
- no-manual-page [usr/bin/parallel-fastq]
- useless-whatis-entry [usr/share/man/man1/maf-cut.1.gz]

lefse 1.1.2-1

lefse_1.1.2-1_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/lefse:2]
- script-with-language-extension [usr/bin/lefse2circlader.py]
- script-with-language-extension [usr/bin/lefse_format_input.py]
- script-with-language-extension [usr/bin/lefse_plot_cladogram.py]
- script-with-language-extension [usr/bin/lefse_plot_features.py]
- script-with-language-extension [usr/bin/lefse_plot_res.py]
- script-with-language-extension [usr/bin/lefse_run.py]
- script-with-language-extension [usr/bin/qiime2lefse.py]

libace-perl 1.92-11

libace-perl_1.92-11.dsc (main)
- source-is-missing [docs/ACE_SERVER_TRAPS.HOWTO.html]
libace-perl_1.92-11_amd64.deb (main)
- pod-conversion-message [usr/share/man/man3/Ace.3pm.gz:1195]
- pod-conversion-message [usr/share/man/man3/Ace::Graphics::GlyphFactory.3pm.gz:191]
- pod-conversion-message [usr/share/man/man3/Ace::Sequence::GappedAlignment.3pm.gz:156]
- pod-conversion-message [usr/share/man/man3/Ace::Sequence::Gene.3pm.gz:169]
- pod-conversion-message [usr/share/man/man3/Ace::Sequence::Transcript.3pm.gz:169]

libatomic-queue 0.0+git20211209.7db4cea-1

libatomic-queue_0.0+git20211209.7db4cea-1.dsc (main)
- source-is-missing [html/benchmarks.js]
- mismatched-override source-is-missing html/benchmarks.js* [debian/source/lintian-overrides:2]

libbigwig 0.4.4+dfsg-2

libbigwig-doc_0.4.4+dfsg-2_all.deb (main)
- privacy-breach-generic [<img src="https://travis-ci.org/dpryan79/libbigwig.svg?branch=master" alt="master build status" class="inline"/>] (https://travis-ci.org/dpryan79/libbigwig.svg?branch=master) [usr/share/doc/libbigwig-dev/html/md_README.html]
- privacy-breach-generic [<img src="https://zenodo.org/badge/doi/10.5281/zenodo.45278.svg" alt="doi" class="inline"/>] (https://zenodo.org/badge/doi/10.5281/zenodo.45278.svg) [usr/share/doc/libbigwig-dev/html/md_README.html]

libbiod 0.2.3+git20191120.b8eecef-2

libbiod_0.2.3+git20191120.b8eecef-2.dsc (main)
- superfluous-file-pattern bio/bam/thirdparty/msgpack.d [debian/copyright:9]
libbiod-dev_0.2.3+git20191120.b8eecef-2+b3_amd64.deb (main)
- script-not-executable [usr/include/d/bio/bio/etc/ragel/workarounds/fix_static_const.sh]
- script-not-executable [usr/include/d/bio/bio/etc/ragel/workarounds/fix_switch_case_fallthrough.sh]

libbio-db-biofetch-perl 1.7.3-4

libbio-db-biofetch-perl_1.7.3-4.dsc (main)
- obsolete-runtime-tests-restriction needs-recommends [debian/tests/control:18]

libbio-db-embl-perl 1.7.4-4

libbio-db-embl-perl_1.7.4-4.dsc (main)
- obsolete-runtime-tests-restriction needs-recommends [debian/tests/control:18]

libbio-db-hts-perl 3.01-3

libbio-db-hts-perl_3.01-3+b1_amd64.deb (main)
- possible-missing-colon-in-closes Closes #948097 [usr/share/doc/libbio-db-hts-perl/changelog.Debian.gz:1]
- bad-whatis-entry [usr/share/man/man3/Bio::DB::HTS::FetchIterator.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Bio::DB::HTS::ReadIterator.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Bio::DB::HTS::Segment.3pm.gz]
- mismatched-override wrong-section-according-to-package-name libbio-db-hts-perl => perl [usr/share/lintian/overrides/libbio-db-hts-perl:3]

libbio-db-ncbihelper-perl 1.7.6-4

libbio-db-ncbihelper-perl_1.7.6-4.dsc (main)
- obsolete-runtime-tests-restriction needs-recommends [debian/tests/control:18]

libbio-graphics-perl 2.40-6

libbio-graphics-perl_2.40-6_all.deb (main)
- bad-whatis-entry [usr/share/man/man3/Bio::Graphics::Glyph::fb_shmiggle.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Bio::Graphics::Wiggle::Loader.3pm.gz]
- groff-message 165: warning [p 1, 4.8i]: can't break line [usr/share/man/man3/Bio::Graphics::Glyph::hybrid_plot.3pm.gz:1]
- groff-message 313: warning [p 3, 1.8i]: can't break line [usr/share/man/man3/Bio::Graphics::Glyph::ideogram.3pm.gz:1]
- no-manual-page [usr/bin/bam_coverage_windows]
- no-manual-page [usr/bin/coverage_to_topoview]
- no-manual-page [usr/bin/glyph_help]
- no-manual-page [usr/bin/render_msa]
- pod-conversion-message [usr/share/man/man3/Bio::Graphics::FeatureDir.3pm.gz:226]

libbio-mage-perl 20030502.3-6

libbio-mage-perl_20030502.3-6_all.deb (main)
- bad-whatis-entry [usr/share/man/man3/Bio::MAGE::Association.3pm.gz]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Array::Array.3pm.gz:1073]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Array::ArrayGroup.3pm.gz:1270]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Array::ArrayManufacture.3pm.gz:1082]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Array::ArrayManufactureDeviation.3pm.gz:555]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::ArrayDesign::ArrayDesign.3pm.gz:1086]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::ArrayDesign::CompositeGroup.3pm.gz:859]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::ArrayDesign::DesignElementGroup.3pm.gz:803]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::ArrayDesign::FeatureGroup.3pm.gz:1135]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::ArrayDesign::PhysicalArrayDesign.3pm.gz:1189]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::ArrayDesign::ReporterGroup.3pm.gz:859]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::ArrayDesign::Zone.3pm.gz:1009]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneGroup.3pm.gz:769]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneLayout.3pm.gz:662]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Array::FeatureDefect.3pm.gz:576]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Array::Fiducial.3pm.gz:743]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMS.3pm.gz:792]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMSBiomaterial.3pm.gz:923]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Array::PositionDelta.3pm.gz:572]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Array::ZoneDefect.3pm.gz:576]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Audit.3pm.gz:741]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Contact.3pm.gz:1007]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Organization.3pm.gz:1057]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Person.3pm.gz:1186]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Security.3pm.gz:812]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::AuditAndSecurity::SecurityGroup.3pm.gz:752]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::BioAssay.3pm.gz:816]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayCreation.3pm.gz:910]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayTreatment.3pm.gz:850]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::Channel.3pm.gz:752]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayData.3pm.gz:939]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDatum.3pm.gz:621]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDimension.3pm.gz:752]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMap.3pm.gz:859]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMapping.3pm.gz:495]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataCube.3pm.gz:527]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataTuples.3pm.gz:495]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataValues.3pm.gz:444]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::CompositeSequenceDimension.3pm.gz:752]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::DerivedBioAssayData.3pm.gz:987]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementDimension.3pm.gz:698]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMap.3pm.gz:757]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMapping.3pm.gz:495]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::FeatureDimension.3pm.gz:752]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::MeasuredBioAssayData.3pm.gz:940]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeDimension.3pm.gz:752]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMap.3pm.gz:859]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMapping.3pm.gz:495]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::ReporterDimension.3pm.gz:752]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssayData::Transformation.3pm.gz:1000]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::DerivedBioAssay.3pm.gz:979]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::FeatureExtraction.3pm.gz:846]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::Hybridization.3pm.gz:906]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::Image.3pm.gz:844]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::ImageAcquisition.3pm.gz:906]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::MeasuredBioAssay.3pm.gz:919]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioAssay::PhysicalBioAssay.3pm.gz:979]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioEvent::BioEvent.3pm.gz:763]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioEvent::Map.3pm.gz:757]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterial.3pm.gz:921]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterialMeasurement.3pm.gz:529]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioMaterial::BioSample.3pm.gz:966]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioMaterial::BioSource.3pm.gz:979]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioMaterial::Compound.3pm.gz:904]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioMaterial::CompoundMeasurement.3pm.gz:529]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioMaterial::LabeledExtract.3pm.gz:979]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioMaterial::Treatment.3pm.gz:1011]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioSequence::BioSequence.3pm.gz:1195]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeature.3pm.gz:709]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeatureLocation.3pm.gz:587]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BioSequence::SequencePosition.3pm.gz:531]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::BQS::BibliographicReference.3pm.gz:1152]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Describable.3pm.gz:626]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Description::Database.3pm.gz:842]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Description::DatabaseEntry.3pm.gz:664]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Description::Description.3pm.gz:919]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Description::ExternalReference.3pm.gz:615]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Description::OntologyEntry.3pm.gz:679]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::CompositeCompositeMap.3pm.gz:859]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::CompositePosition.3pm.gz:632]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::CompositeSequence.3pm.gz:919]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::DesignElement.3pm.gz:744]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::Feature.3pm.gz:1047]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::FeatureInformation.3pm.gz:542]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::FeatureLocation.3pm.gz:525]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::FeatureReporterMap.3pm.gz:859]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::MismatchInformation.3pm.gz:570]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::Position.3pm.gz:572]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::Reporter.3pm.gz:968]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::ReporterCompositeMap.3pm.gz:859]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::DesignElement::ReporterPosition.3pm.gz:632]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Experiment::Experiment.3pm.gz:992]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Experiment::ExperimentalFactor.3pm.gz:859]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Experiment::ExperimentDesign.3pm.gz:923]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Experiment::FactorValue.3pm.gz:833]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Extendable.3pm.gz:490]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster.3pm.gz:799]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::Node.3pm.gz:782]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeContents.3pm.gz:743]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeValue.3pm.gz:666]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Identifiable.3pm.gz:750]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Measurement::ConcentrationUnit.3pm.gz:525]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Measurement::DistanceUnit.3pm.gz:525]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Measurement::MassUnit.3pm.gz:525]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Measurement::Measurement.3pm.gz:666]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Measurement::QuantityUnit.3pm.gz:525]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Measurement::TemperatureUnit.3pm.gz:525]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Measurement::TimeUnit.3pm.gz:525]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Measurement::Unit.3pm.gz:498]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Measurement::VolumeUnit.3pm.gz:525]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::NameValueType.3pm.gz:567]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Protocol::Hardware.3pm.gz:1054]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Protocol::HardwareApplication.3pm.gz:754]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Protocol::Parameter.3pm.gz:786]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Protocol::Parameterizable.3pm.gz:801]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Protocol::ParameterizableApplication.3pm.gz:669]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Protocol::ParameterValue.3pm.gz:527]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Protocol::Protocol.3pm.gz:1054]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Protocol::ProtocolApplication.3pm.gz:934]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Protocol::Software.3pm.gz:1011]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Protocol::SoftwareApplication.3pm.gz:799]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::ConfidenceIndicator.3pm.gz:1044]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::DerivedSignal.3pm.gz:998]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::Error.3pm.gz:1045]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::ExpectedValue.3pm.gz:1045]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::Failed.3pm.gz:998]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::MeasuredSignal.3pm.gz:998]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::PresentAbsent.3pm.gz:998]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::PValue.3pm.gz:1045]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::QuantitationType.3pm.gz:996]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::Ratio.3pm.gz:998]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::SpecializedQuantitationType.3pm.gz:998]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::QuantitationType::StandardQuantitationType.3pm.gz:1004]

libbio-mage-utils-perl 20030502.0-5

libbio-mage-utils-perl_20030502.0-5_all.deb (main)
- bad-whatis-entry [usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyClassEntry.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyEntry.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyHelper.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyPropertyEntry.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Bio::MAGE::XML::Handler.3pm.gz]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::SQLUtils.3pm.gz:101]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyClassEntry.3pm.gz:144]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyEntry.3pm.gz:127]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyPropertyEntry.3pm.gz:118]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::XML::Handler.3pm.gz:103]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::XML::Reader.3pm.gz:214]
- pod-conversion-message [usr/share/man/man3/Bio::MAGE::XML::Writer.3pm.gz:310]

libbio-tools-run-remoteblast-perl 1.7.3-3

libbio-tools-run-remoteblast-perl_1.7.3-3_all.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/libbio-tools-run-remoteblast-perl:2]
- script-with-language-extension [usr/bin/bp_remote_blast.pl]

libbio-variation-perl 1.7.5-3

libbio-variation-perl_1.7.5-3_all.deb (main)
- bad-whatis-entry [usr/share/man/man3/Bio::Variation.3pm.gz]

libbpp-phyl 2.4.1-6

libbpp-phyl-dev_2.4.1-6_amd64.deb (main)
- national-encoding [usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h]
- national-encoding [usr/include/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h]
- national-encoding [usr/include/Bpp/Phyl/Model/AnonymousSubstitutionModel.h]
- national-encoding [usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h]
- national-encoding [usr/include/Bpp/Phyl/Model/FromMixtureSubstitutionModel.h]
- national-encoding [usr/include/Bpp/Phyl/Model/InMixedSubstitutionModel.h]
- national-encoding [usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h]
- national-encoding [usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h]
- national-encoding [usr/include/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h]
- national-encoding [usr/include/Bpp/Phyl/Model/OneChangeTransitionModel.h]

libbpp-phyl-omics 2.4.1-3

libbpp-phyl-omics3_2.4.1-3_amd64.deb (main)
- symbols-file-contains-current-version-with-debian-revision on symbol _ZN3bpp13NodeExceptionD0Ev@Base and 53 others (libbpp-phyl-omics.so.3) [symbols]

libbpp-qt 2.4.1-6

libbpp-qt-dev_2.4.1-6_amd64.deb (main)
- national-encoding [usr/include/Bpp/Qt/Tree/TreeCanvasControlers.h]
- national-encoding [usr/include/Bpp/Qt/Tree/TreeCanvas.h]
- national-encoding [usr/include/Bpp/Qt/Tree/TreeStatisticsBox.h]

libbpp-seq 2.4.1-7

libbpp-seq-dev_2.4.1-7_amd64.deb (main)
- national-encoding [usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h]
- national-encoding [usr/include/Bpp/Seq/Alphabet/IntegerAlphabet.h]

libcereal 1.3.1+dfsg-1

libcereal_1.3.1+dfsg-1.dsc (main)
- source-is-missing [include/cereal/external/rapidxml/manual.html]

libchado-perl 1.31-6

libchado-perl_1.31-6.dsc (main)
libchado-perl_1.31-6_all.deb (main)
- alien-tag package-contains-upstream-install-documentation [usr/share/lintian/overrides/libchado-perl:1]

libcifpp 2.0.4-4

libcifpp_2.0.4-4.dsc (main)
- comma-separated-files-in-dep5-copyright [debian/copyright:14]

libcolt-free-java 1.2.0+dfsg-8~exp1

libdeflate 1.9-1

libdeflate-tools_1.9-1_amd64.deb (main)
- no-manual-page [usr/bin/libdeflate-gunzip]
- no-manual-page [usr/bin/libdeflate-gzip]

libdisorder 0.0.2+git20130809.8062ee1-4

libdisorder0_0.0.2+git20130809.8062ee1-4_amd64.deb (main)
- library-not-linked-against-libc [usr/lib/x86_64-linux-gnu/libdisorder.so.0.0.0]

libdistlib-java 1.0-2

libdistlib-java_1.0-2_all.deb (main)
- bad-jar-name [usr/share/java/distlib.jar]
libdistlib-java-doc_1.0-2_all.deb (main)
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libdistlib-java/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libdistlib-java/api/jquery/jquery-3.3.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libdistlib-java/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libdistlib-java/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libdistlib-java/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libdistlib-java/api/jquery/jquery-ui.min.js]
- mismatched-override embedded-javascript-library usr/share/doc/libdistlib-java/api/*/jquery*.*s * [usr/share/lintian/overrides/libdistlib-java-doc:4]

libgclib 0.12.7+ds-4

libgclib-dev_0.12.7+ds-4_amd64.deb (main)
- no-code-sections [usr/lib/x86_64-linux-gnu/libgclib.a]

libgenome-model-tools-music-perl 0.04-5

libgenome-model-tools-music-perl_0.04-5_all.deb (main)
- bad-whatis-entry [usr/share/man/man1/genome-music.1p.gz]
- bad-whatis-entry [usr/share/man/man1/gmt-music.1p.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music::Bmr::CalcBmr.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music::Bmr::CalcCovg.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music::Bmr::CalcCovgHelper.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music::Bmr::CalcWigCovg.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music::ClinicalCorrelation.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music::MutationRelation.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music::PathScan.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music::Proximity.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music::Smg.3pm.gz]
- bad-whatis-entry [usr/share/man/man3/Genome::Model::Tools::Music::Survival.3pm.gz]
- mismatched-override bad-whatis-entry usr/share/man/* [usr/share/lintian/overrides/libgenome-model-tools-music-perl:1]

libgenome-perl 0.06-6

libgenome-perl_0.06-6.dsc (main)
- no-nmu-in-changelog [debian/changelog:1]
- source-nmu-has-incorrect-version-number 0.06-6 [debian/changelog:1]

libgkarrays 2.1.0+dfsg-4

libgkarrays-dev_2.1.0+dfsg-4_amd64.deb (main)
- national-encoding [usr/include/libProgressBar-1.2.0/progressBar.h]
- package-name-defined-in-config-h usr/include/libGkArrays-2.1.0/config.h
- package-name-defined-in-config-h usr/include/libProgressBar-1.2.0/config.h

libgoby-java 3.3.1+dfsg2-7

goby-java_3.3.1+dfsg2-7_all.deb (main)
- bad-jar-name [usr/share/java/goby-distribution.jar]
libgoby-io-java_3.3.1+dfsg2-7_all.deb (main)
- bad-jar-name [usr/share/java/goby-io.jar]

libhac-java 0.20110510+git20110510.8b2a326-1

libhac-java-doc_0.20110510+git20110510.8b2a326-1_all.deb (main)
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libhac-java-doc/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libhac-java-doc/api/jquery/jquery-3.5.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.min.js]

libhmsbeagle 3.1.2+dfsg-12

libhmsbeagle1v5_3.1.2+dfsg-12_amd64.deb (main)
- lacks-unversioned-link-to-shared-library example: usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so [usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so]
- shared-library-lacks-version usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so libhmsbeagle-jni.so

libjung-free-java 2.1.1-1

libjung-free-java_2.1.1-1_all.deb (main)
- bad-jar-name [usr/share/java/jung-algorithms.jar]
- bad-jar-name [usr/share/java/jung-api.jar]
- bad-jar-name [usr/share/java/jung-graph-impl.jar]
- bad-jar-name [usr/share/java/jung-io.jar]
- bad-jar-name [usr/share/java/jung-samples.jar]
- bad-jar-name [usr/share/java/jung-visualization.jar]
libjung-free-java-doc_2.1.1-1_all.deb (main)
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libjung-free-java/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libjung-free-java/api/jquery/jquery-3.5.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjung-free-java/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjung-free-java/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjung-free-java/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libjung-free-java/api/jquery/jquery-ui.min.js]
- mismatched-override embedded-javascript-library usr/share/doc/libjung-free-java/api/jquery/* * [usr/share/lintian/overrides/libjung-free-java-doc:4]

libkmlframework-java 0.0.git20150825.a2e0518-1

libkmlframework-java_0.0.git20150825.a2e0518-1.dsc (main)
- build-depends-on-obsolete-package Build-Depends: libservlet3.1-java => libservlet-api-java

libla4j-java 0.6.0-3

libla4j-java_0.6.0-3_all.deb (main)
- bad-jar-name [usr/share/java/la4j.jar]

liblemon 1.3.1+dfsg-5

liblemon-dev_1.3.1+dfsg-5_amd64.deb (main)
- national-encoding [usr/include/lemon/soplex.h]
liblemon-utils_1.3.1+dfsg-5_amd64.deb (main)
- no-manual-page [usr/bin/dimacs-solver]
- no-manual-page [usr/bin/dimacs-to-lgf]
- no-manual-page [usr/bin/lgf-gen]

libmems 1.6.0+4725-9

libmems-dev_1.6.0+4725-9+b1_amd64.deb (main)
- national-encoding [usr/include/libMems/Matrix.h]

libmialm 1.0.9-3

libmialm_1.0.9-3.dsc (main)
- orig-tarball-missing-upstream-signature libmialm_1.0.9.orig.tar.xz

libmurmurhash 1.5-3

libmurmurhash_1.5-3.dsc (main)
- no-nmu-in-changelog [debian/changelog:1]
- source-nmu-has-incorrect-version-number 1.5-3 [debian/changelog:1]

libncl 2.1.21+git20210811.b1213a7-1

libncl_2.1.21+git20210811.b1213a7-1.dsc (main)
ncl-tools_2.1.21+git20210811.b1213a7-1_amd64.deb (main)
- no-manual-page [usr/bin/checktaxonnodes]
- no-manual-page [usr/bin/findunsupportededges]
- no-manual-page [usr/bin/otsubtree]
- no-manual-page [usr/bin/otTreeInspect]
- no-manual-page [usr/bin/outdeg1count]

liboptions-java 0.0.20120113-3

liboptions-java-doc_0.0.20120113-3_all.deb (main)
- doc-base-file-references-wrong-path //usr/share/doc/liboptions-java/api [usr/share/doc-base/liboptions-java-doc:8]
- doc-base-file-references-wrong-path //usr/share/doc/liboptions-java/api/*.html [usr/share/doc-base/liboptions-java-doc:9]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/liboptions-java/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/liboptions-java/api/jquery/jquery-3.3.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/liboptions-java/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/liboptions-java/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/liboptions-java/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/liboptions-java/api/jquery/jquery-ui.min.js]

libpal-java 1.5.1+dfsg-8

libpal-java-doc_1.5.1+dfsg-8_all.deb (main)
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libpal-java/api/jquery/external/jquery/jquery.js]
- embedded-javascript-library please use libjs-jquery [usr/share/doc/libpal-java/api/jquery/jquery-3.5.1.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libpal-java/api/jquery/jquery-ui.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libpal-java/api/jquery/jquery-ui.js]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libpal-java/api/jquery/jquery-ui.min.css]
- embedded-javascript-library please use libjs-jquery-ui [usr/share/doc/libpal-java/api/jquery/jquery-ui.min.js]

libpll 0.3.2-4

libpll_0.3.2-4.dsc (main)
- test-leaves-python-version-untested [debian/tests/run-unit-test]

libqes 0.2.8+ds-1

libqes_0.2.8+ds-1.dsc (main)
- superfluous-file-pattern src/crc.* [debian/copyright:11]

librostlab 1.0.20-10

librostlab3_1.0.20-10_amd64.deb (main)
- shared-library-lacks-prerequisites [usr/lib/x86_64-linux-gnu/librostlab.so.3.0.0]
librostlab3-dev_1.0.20-10_amd64.deb (main)
- no-code-sections [usr/lib/x86_64-linux-gnu/librostlab.a]

librostlab-blast 1.0.1-10

librostlab-blast_1.0.1-10.dsc (main)

libsbml 5.19.0+dfsg-1

libsbml_5.19.0+dfsg-1.dsc (main)
- source-is-missing [docs/src/common-text/libsbml-issues.html]
- debian-rules-uses-supported-python-versions-without-python-all-build-depends py3versions -s [debian/rules:79]
libsbml5-java_5.19.0+dfsg-1_amd64.deb (main)
- bad-jar-name [usr/share/java/libsbmlj.jar]
- needless-dependency-on-jre

libsis-base-java 18.09~pre1+git20180928.45fbd31+dfsg-3

libsis-base-jni_18.09~pre1+git20180928.45fbd31+dfsg-3_amd64.deb (main)
- package-has-unnecessary-activation-of-ldconfig-trigger

libtfbs-perl 0.7.1+ds-1

libtfbs-perl_0.7.1+ds-1_amd64.deb (main)
- bad-whatis-entry [usr/share/man/man3/TFBS::SitePair.3pm.gz]
- mismatched-override bad-whatis-entry usr/share/man/man3/TFBS::SitePair.3pm.gz [usr/share/lintian/overrides/libtfbs-perl:2]
- mismatched-override national-encoding usr/share/doc/libtfbs-perl/examples/t/transfac_*/matrix.dat [usr/share/lintian/overrides/libtfbs-perl:3]
- mismatched-override package-contains-documentation-outside-usr-share-doc */TFBS/README.md [usr/share/lintian/overrides/libtfbs-perl:5]
- mismatched-override pod-conversion-message usr/share/man/man3/TFBS::Matrix::Alignment.3pm.gz:* [usr/share/lintian/overrides/libtfbs-perl:4]
- national-encoding [usr/share/doc/libtfbs-perl/examples/t/transfac_new/matrix.dat]
- national-encoding [usr/share/doc/libtfbs-perl/examples/t/transfac_old/matrix.dat]
- pod-conversion-message [usr/share/man/man3/TFBS::Matrix::Alignment.3pm.gz:196]

libvcflib 1.0.2+dfsg-5

libvcflib-tools_1.0.2+dfsg-5_amd64.deb (main)
- bad-whatis-entry [usr/share/man/man1/abba-baba.1.gz]
- bad-whatis-entry [usr/share/man/man1/bFst.1.gz]
- bad-whatis-entry [usr/share/man/man1/dumpContigsFromHeader.1.gz]
- bad-whatis-entry [usr/share/man/man1/genotypeSummary.1.gz]
- bad-whatis-entry [usr/share/man/man1/hapLrt.1.gz]
- bad-whatis-entry [usr/share/man/man1/iHS.1.gz]
- bad-whatis-entry [usr/share/man/man1/meltEHH.1.gz]
- bad-whatis-entry [usr/share/man/man1/normalize-iHS.1.gz]
- bad-whatis-entry [usr/share/man/man1/permuteGPAT++.1.gz]
- bad-whatis-entry [usr/share/man/man1/permuteSmooth.1.gz]
- bad-whatis-entry [usr/share/man/man1/pFst.1.gz]
- bad-whatis-entry [usr/share/man/man1/plotHaps.1.gz]
- bad-whatis-entry [usr/share/man/man1/popStats.1.gz]
- bad-whatis-entry [usr/share/man/man1/pVst.1.gz]
- bad-whatis-entry [usr/share/man/man1/segmentFst.1.gz]
- bad-whatis-entry [usr/share/man/man1/segmentIhs.1.gz]
- bad-whatis-entry [usr/share/man/man1/sequenceDiversity.1.gz]
- bad-whatis-entry [usr/share/man/man1/smoother.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcf2dag.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcf2fasta.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcf2tsv.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfaddinfo.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfafpath.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfallelicprimitives.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfaltcount.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfannotate.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfannotategenotypes.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfbreakmulti.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfcat.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfcheck.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfclassify.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfcleancomplex.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfcombine.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfcommonsamples.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfcountalleles.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfcreatemulti.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfdistance.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfecho.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfentropy.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfevenregions.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcffilter.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcffixup.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfflatten.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfgeno2alleles.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfgeno2haplo.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfgenosamplenames.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfgenosummarize.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfgenotypecompare.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfgenotypes.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfglbound.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfglxgt.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfhetcount.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfhethomratio.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfindex.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfinfo2qual.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfinfosummarize.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfintersect.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfkeepgeno.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfkeepinfo.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfkeepsamples.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfld.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfleftalign.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcflength.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcflib.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfnumalt.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfoverlay.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfparsealts.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfprimers.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfqual2info.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfrandom.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfrandomsample.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfremap.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfremoveaberrantgenotypes.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfremovesamples.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfroc.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfsample2info.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfsamplediff.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfsamplenames.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfsitesummarize.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfstats.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfstreamsort.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfuniq.1.gz]
- bad-whatis-entry [usr/share/man/man1/vcfuniqalleles.1.gz]
- bad-whatis-entry [usr/share/man/man1/wcFst.1.gz]

libvistaio 1.2.19-3

libvistaio_1.2.19-3.dsc (main)
- orig-tarball-missing-upstream-signature libvistaio_1.2.19.orig.tar.xz
libvistaio-dev_1.2.19-3_amd64.deb (main)
- national-encoding [usr/include/vistaio-1.2/vistaio/vista.h]

libzeep 5.1.4-1

libzeep_5.1.4-1.dsc (main)
- source-is-missing [doc/index.html]

libzerg 1.0.7-11

libzerg0_1.0.7-11_amd64.deb (main)
- national-encoding [usr/share/doc/libzerg0/README]

libzerg-perl 1.0.4-8

libzerg-perl_1.0.4-8_amd64.deb (main)
- national-encoding [usr/lib/x86_64-linux-gnu/perl5/5.32/Zerg/Report.pm]

libzstd 1.4.8+dfsg-3

libzstd_1.4.8+dfsg-3.dsc (main)
- mismatched-override binary-control-field-duplicates-source field "section" in package libzstd1 [debian/source/lintian-overrides:1]

logol 1.7.9+dfsg-1

logol_1.7.9+dfsg-1.dsc (main)
- superfluous-file-pattern Doc/pldoc.sty [debian/copyright:14]
logol_1.7.9+dfsg-1_all.deb (main)
- mismatched-override package-contains-empty-directory usr/share/doc/logol/examples/results/ [usr/share/lintian/overrides/logol:2]
- mismatched-override package-contains-empty-directory usr/share/doc/logol/examples/tmp/ [usr/share/lintian/overrides/logol:3]
logol-bin_1.7.9+dfsg-1_amd64.deb (main)
- unstripped-binary-or-object [usr/lib/logol/logol.exe]
- unstripped-binary-or-object [usr/lib/logol/preanalyse.exe]
- mismatched-override unstripped-binary-or-object usr/lib/logol/logol.exe [usr/share/lintian/overrides/logol-bin:3]
- mismatched-override unstripped-binary-or-object usr/lib/logol/preanalyse.exe [usr/share/lintian/overrides/logol-bin:2]

macs 2.2.7.1-5

macs_2.2.7.1-5+b1_amd64.deb (main)
- groff-message 14: warning [p 1, 2.7i]: cannot adjust line [usr/share/man/man1/macs2.1.gz:2]
- groff-message 8: warning [p 1, 1.7i]: cannot adjust line [usr/share/man/man1/macs2.1.gz:1]
- mismatched-override manpage-has-errors-from-man usr/share/man/man1/macs2.1.gz 8: warning [p 1, 1.7i]: cannot adjust line [usr/share/lintian/overrides/macs:1]
- package-contains-timestamped-gzip 2021-11-21T09:03:39 [usr/share/doc/macs/examples/aluY.chr1.bed.gz]
- package-contains-timestamped-gzip 2021-11-21T09:03:39 [usr/share/doc/macs/examples/gerp.chr1.bed.gz]

macsyfinder 2.0~rc4-2

macsyfinder_2.0~rc4-2_amd64.deb (main)
- mismatched-override package-contains-documentation-outside-usr-share-doc usr/share/macsyfinder/data/models/readme [usr/share/lintian/overrides/macsyfinder:1]
- no-manual-page [usr/bin/macsydata]
- no-manual-page [usr/bin/macsyprofile]

maffilter 1.3.1+dfsg-3

maffilter_1.3.1+dfsg-3_amd64.deb (main)
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/maffilter.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/AlnFilter2.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/AlnFilter.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/AlnScore.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Analyzing.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/BlockCounts.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/BlockLength.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/BlockSize.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Cleaning.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Concatenate.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/CountClusters.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Description.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Descriptive.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/DistanceBasedPhylogeny.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/DistanceEstimation.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/DiversityStatistics.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/DropSpecies.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/EntropyFilter.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Exporting.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/ExtractFeature.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Extracting.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/FeatureFilter.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Filters.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/FourSpeciesSitePatternCounts.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/General.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/index.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Introduction.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/LiftOver.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/MaskFilter.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Merge.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/MinBlockLength.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/MinBlockSize.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Miscelaneous.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/ModelFit.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/MsmcOutput.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/NewOutgroup.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/OrderFilter.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/OutputAlignments.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/OutputAsTable.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/OutputCoordinates.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/OutputDistanceMatrices.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Output.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/OutputTrees.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/PairwiseDivergence.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Phylogenetics.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/PlinkOutput.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/PolymorphismStatistics.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/QualFilter.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/RemoveEmptySequences.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Run.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/SelectChr.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/SelectOrphans.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/SequenceLength.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/SiteFrequencySpectrum.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/SiteStatistics.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/Subset.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/SystemCall.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/TreeFilter.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/VcfOutput.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/WindowSplit.html]
- privacy-breach-generic [<link rel="stylesheet" type="text/css" href="http://www.w3.org/stylesheets/core/steely">] (http://www.w3.org/stylesheets/core/steely) [usr/share/doc/maffilter/Manual/XFullGap.html]

maq 0.7.1-9

maq_0.7.1-9_amd64.deb (main)
- mismatched-override script-with-language-extension usr/bin/*.* [usr/share/lintian/overrides/maq:4]
- mismatched-override script-with-language-extension usr/bin/maq.pl [usr/share/lintian/overrides/maq:2]
- script-with-language-extension [usr/bin/farm-run.pl]
- script-with-language-extension [usr/bin/maq_eval.pl]
- script-with-language-extension [usr/bin/maq.pl]
- script-with-language-extension [usr/bin/maq_plot.pl]

mauve-aligner 2.4.0+4736-4

mauve-aligner_2.4.0+4736-4_amd64.deb (main)
- bad-jar-name [usr/share/java/Mauve.jar]
- no-manual-page [usr/bin/mauve]
- no-manual-page [usr/bin/mauve-contig-mover]

mcl 1:14-137+ds-9

mcl_14-137+ds-9+b1_amd64.deb (main)
- no-manual-page [usr/bin/clxdo]

mecat2 0.0+git20200428.f54c542+ds-3

mecat2_0.0+git20200428.f54c542+ds-3_amd64.deb (main)
- mismatched-override no-manual-page usr/bin/mecat2cns [usr/share/lintian/overrides/mecat2:9]
- mismatched-override no-manual-page usr/bin/mecat2extseqs [usr/share/lintian/overrides/mecat2:10]
- mismatched-override no-manual-page usr/bin/mecat2lcr [usr/share/lintian/overrides/mecat2:11]
- mismatched-override no-manual-page usr/bin/mecat2map [usr/share/lintian/overrides/mecat2:12]
- mismatched-override no-manual-page usr/bin/mecat2pm4 [usr/share/lintian/overrides/mecat2:13]
- mismatched-override no-manual-page usr/bin/mecat2splitreads [usr/share/lintian/overrides/mecat2:14]
- mismatched-override no-manual-page usr/bin/mecat2trimbases [usr/share/lintian/overrides/mecat2:15]
- mismatched-override no-manual-page usr/bin/mecat2viewdb [usr/share/lintian/overrides/mecat2:16]
- no-manual-page [usr/bin/mecat2cns]
- no-manual-page [usr/bin/mecat2extseqs]
- no-manual-page [usr/bin/mecat2lcr]
- no-manual-page [usr/bin/mecat2map]
- no-manual-page [usr/bin/mecat2pm4]
- no-manual-page [usr/bin/mecat2splitreads]
- no-manual-page [usr/bin/mecat2trimbases]
- no-manual-page [usr/bin/mecat2viewdb]

medicalterms 20160103-6

hunspell-de-med_20160103-6_all.deb (main)
- national-encoding [usr/share/hunspell/de_med.dic]

melting 5.2.0-2

melting_5.2.0-2.dsc (main)

Lintian Reports_BETA

Hints

Debian Med Packaging Team