Andreas Tille

At the time of the last Lintian run, the following possible problems were found in packages maintained by Andreas Tille <tille@debian.org>, listed by source package. See also the full report, including info, experimental and overridden tags. Also see their QA overview.

abacas

• W manpage-has-errors-from-man
  • usr/share/man/man1/abacas.1.gz 20: warning [p 1, 3.0i, div `an-div', 0.0i]: cannot adjust line

abinit

• W binary-without-manpage
  • usr/bin/aim [amd64, i386]
  • usr/bin/anaddb [amd64, i386]
  • usr/bin/band2eps [amd64, i386]
  • usr/bin/bsepostproc [amd64, i386]
  • usr/bin/conducti [amd64, i386]
  • usr/bin/cut3d [amd64, i386]
  • usr/bin/dummy_tests [amd64, i386]
  • usr/bin/fftprof [amd64, i386]
  • usr/bin/fold2Bloch [amd64, i386]
  • usr/bin/ioprof [amd64, i386]
  • usr/bin/lapackprof [amd64, i386]
  • usr/bin/macroave [amd64, i386]
  • usr/bin/mrgddb [amd64, i386]
  • usr/bin/mrgdv [amd64, i386]
  • usr/bin/mrggkk [amd64, i386]
  • usr/bin/mrgscr [amd64, i386]
  • usr/bin/optic [amd64, i386]
  • usr/bin/tdep [amd64, i386]
  • usr/bin/ujdet [amd64, i386]
  • usr/bin/vdw_kernelgen [amd64, i386]

adapterremoval

• W privacy-breach-generic
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)

adapterremoval

• W privacy-breach-generic
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)

alien-hunter

• W package-installs-java-bytecode
  • usr/share/alien_hunter/ChangepointLeft$1.class
  • usr/share/alien_hunter/ChangepointLeft.class
  • usr/share/alien_hunter/ChangepointRight$1.class
  • usr/share/alien_hunter/ChangepointRight.class

amide (1.0.5-12+b1; main)

• W manpage-has-errors-from-man
  • usr/share/man/man1/amide.1.gz 6: warning: macro `IX' not defined

ampliconnoise-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/1d/02c5065511784c6f83d548dc53f7aa46f9dffa.debug
  • usr/lib/debug/.build-id/94/29e99411a34a807f13179d30280fcd2ca002b3.debug

arb-common

• W duplicate-changelog-files
  • usr/share/doc/arb-common/arb_CHANGES.txt.gz usr/share/doc/arb-common/changelog.gz usr/share/doc/arb/arb_CHANGES.txt.gz

• W changelog-should-mention-nmu
• W debian-rules-should-not-set-CFLAGS-from-noopt
• W python-foo-but-no-python3-foo
  • python-ball
  • python-ballview
• W source-nmu-has-incorrect-version-number
  • 1.4.3~beta1-3
• W spelling-error-in-patch-description
  • debian/patches/fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch comparision comparison
  • debian/patches/link_against_x11.patch explicitely explicitly
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ball.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ball.git

• W debian-rules-should-not-set-CFLAGS-from-noopt
• W python-foo-but-no-python3-foo
  • python-ball
  • python-ballview
• W spelling-error-in-patch-description
  • debian/patches/fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch comparision comparison
  • debian/patches/link_against_x11.patch explicitely explicitly
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ball.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ball.git

• W python-foo-but-no-python3-foo
  • python-ball

ballview

• W desktop-mime-but-no-exec-code
  • usr/share/applications/ballview.desktop [amd64, i386]

libball1.5

• W dev-pkg-without-shlib-symlink
  • usr/lib/libBALL.so.1.5 usr/lib/libBALL.so [amd64, i386]

libball1.5-dev

• W breaks-without-version
  • libball1.3-dev [amd64, i386]

libballview1.5

• W dev-pkg-without-shlib-symlink
  • usr/lib/libVIEW.so.1.5 usr/lib/libVIEW.so [amd64, i386]

libballview1.5-dev

• W breaks-without-version
  • libballview1.3-dev [amd64, i386]

beast-mcmc

• W binary-without-manpage
  • usr/bin/beast-tracer
  • usr/bin/loganalyser
  • usr/bin/logcombiner
  • usr/bin/treeannotator
  • usr/bin/treestat

libnucleotidelikelihoodcore0-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/11/336cba535f09f330aa77ab501ab24505e96674.debug
  • usr/lib/debug/.build-id/ab/aa72b0f526f2d22d2ebef6b661b7be5e6c1454.debug

bedtools

• W binary-without-manpage
  • usr/bin/annotateBed [amd64, i386]
  • usr/bin/bamToBed [amd64, i386]
  • usr/bin/bamToFastq [amd64, i386]
  • usr/bin/bed12ToBed6 [amd64, i386]
  • usr/bin/bedToBam [amd64, i386]
  • usr/bin/bedToIgv [amd64, i386]
  • usr/bin/bedpeToBam [amd64, i386]
  • usr/bin/bedtools [amd64, i386]
  • usr/bin/closestBed [amd64, i386]
  • usr/bin/clusterBed [amd64, i386]
  • usr/bin/complementBed [amd64, i386]
  • usr/bin/coverageBed [amd64, i386]
  • usr/bin/expandCols [amd64, i386]
  • usr/bin/fastaFromBed [amd64, i386]
  • usr/bin/flankBed [amd64, i386]
  • usr/bin/genomeCoverageBed [amd64, i386]
  • usr/bin/getOverlap [amd64, i386]
  • usr/bin/groupBy [amd64, i386]
  • usr/bin/intersectBed [amd64, i386]
  • usr/bin/linksBed [amd64, i386]
  • usr/bin/mapBed [amd64, i386]
  • usr/bin/maskFastaFromBed [amd64, i386]
  • usr/bin/mergeBed [amd64, i386]
  • usr/bin/multiBamCov [amd64, i386]
  • usr/bin/multiIntersectBed [amd64, i386]
  • usr/bin/nucBed [amd64, i386]
  • usr/bin/pairToBed [amd64, i386]
  • usr/bin/pairToPair [amd64, i386]
  • usr/bin/randomBed [amd64, i386]
  • usr/bin/shiftBed [amd64, i386]
  • usr/bin/shuffleBed [amd64, i386]
  • usr/bin/slopBed [amd64, i386]
  • usr/bin/sortBed [amd64, i386]
  • usr/bin/subtractBed [amd64, i386]
  • usr/bin/tagBam [amd64, i386]
  • usr/bin/unionBedGraphs [amd64, i386]
  • usr/bin/windowBed [amd64, i386]
  • usr/bin/windowMaker [amd64, i386]

bedtools-test

• W executable-not-elf-or-script
  • usr/share/bedtools/data/knownGene.hg18.chr21.bed
  • usr/share/bedtools/test/sort/b.bed
• W script-not-executable
  • usr/share/bedtools/test/bamtobed/test-bamtobed.sh
  • usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
  • usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
  • usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/closest/test-closest.sh
  • usr/share/bedtools/test/cluster/test-cluster.sh
  • usr/share/bedtools/test/complement/test-complement.sh
  • usr/share/bedtools/test/expand/test-expand.sh
  • usr/share/bedtools/test/fisher/cmp.sh
  • usr/share/bedtools/test/fisher/get.sh
  • usr/share/bedtools/test/fisher/shuf.sh
  • usr/share/bedtools/test/fisher/test-fisher.sh
  • usr/share/bedtools/test/flank/test-flank.sh
  • usr/share/bedtools/test/general/test-general.sh
  • usr/share/bedtools/test/getfasta/test-getfasta.sh
  • usr/share/bedtools/test/groupby/test-groupby.sh
  • usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
  • usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/intersect/test-intersect.sh
  • usr/share/bedtools/test/jaccard/test-jaccard.sh
  • usr/share/bedtools/test/makewindows/test-makewindows.sh
  • usr/share/bedtools/test/map/test-map.sh
  • usr/share/bedtools/test/merge/test-merge.sh
  • usr/share/bedtools/test/multicov/test-multicov.sh
  • usr/share/bedtools/test/negativecontrol/test-negativecontrol.sh
  • usr/share/bedtools/test/reldist/test-reldist.sh
  • usr/share/bedtools/test/sample/test-sample.sh
  • usr/share/bedtools/test/shift/test-shift.sh
  • usr/share/bedtools/test/shuffle/test-shuffle.sh
  • usr/share/bedtools/test/slop/test-slop.sh
  • usr/share/bedtools/test/sort/test-sort.sh
  • usr/share/bedtools/test/spacing/test-spacing.sh
  • usr/share/bedtools/test/split/test-split.sh
  • usr/share/bedtools/test/subtract/test-subtract.sh

bio-tradis

• W binary-without-manpage
  • usr/bin/tradis_comparison.R
  • usr/bin/tradis_essentiality.R

libbiococoa2-dbgsym (2.2.2-4+b1; main)

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/25/4436612893978a6efabcfe669210232d8d43d7.debug
  • usr/lib/debug/.build-id/9c/c8ea88fd296f6ce77fb4915fac219023d3d5a5.debug

libbiojava-java-doc

• W embedded-javascript-library
  • usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libbio-perl-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Root::Exception.3pm.gz
  • usr/share/man/man3/Bio::Root::IO.3pm.gz
  • usr/share/man/man3/Bio::Root::Root.3pm.gz
  • usr/share/man/man3/Bio::Root::RootI.3pm.gz
  • usr/share/man/man3/Bio::Root::Storable.3pm.gz
  • usr/share/man/man3/Bio::Root::Test.3pm.gz
  • usr/share/man/man3/Bio::Root::Utilities.3pm.gz
  • usr/share/man/man3/Bio::Root::Version.3pm.gz
  • usr/share/man/man3/Bio::Tools::SeqPattern::Backtranslate.3pm.gz
  • usr/share/man/man3/Bio::TreeIO::NewickParser.3pm.gz
  • usr/share/man/man3/Bio::TreeIO::newick.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/Bio::SeqIO::bsml.3pm.gz 299: warning [p 4, 0.2i]: can't break line

libbio-perl-run-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::FastTree.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Raxml.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Primate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Prints.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Profile.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Signalp.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::TribeMCL.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Vista.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::DB::SoapEUtilities::Result.3pm.gz:419
  • usr/share/man/man3/Bio::Tools::Run::ERPIN.3pm.gz:321

bitseq

• W binary-without-manpage
  • usr/bin/biocUpdate [amd64, i386]
  • usr/bin/checkTR [amd64, i386]

blends-common

• E missing-depends-on-sensible-utils
  • usr/share/menu/blend-menu

• W spelling-error-in-patch-description
  • debian/patches/gcc-64bit.patch unfortunatly unfortunately
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/viewvc/debian-med/trunk/packages/bowtie/trunk/
  • vcs-svn svn://anonscm.debian.org/debian-med/trunk/packages/bowtie/trunk/

• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.3.0)
• W patch-file-present-but-not-mentioned-in-series
  • fix_makefile_machine_detection.patch
• W unnecessary-testsuite-autopkgtest-field
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bowtie2.git
  • vcs-git git://anonscm.debian.org/debian-med/bowtie2.git

bowtie2-examples

• E wrong-path-for-interpreter
  • usr/share/doc/bowtie2/examples/scripts/debug_wrapper.pl (#!/usr/bin/env perl != /usr/bin/perl)

brig

• W bad-jar-name
  • usr/share/java/BRIG-0.95.jar [amd64, i386]
• W binary-without-manpage
  • usr/bin/brig [amd64, i386]

• W debian-watch-file-should-mangle-version
  • line 3

cct

• W executable-not-elf-or-script
  • usr/share/cct/lib/assign_cogs/assign_cogs.pl
  • usr/share/cct/lib/cgview_xml_builder/cgview_xml_builder.pl
  • usr/share/cct/lib/convert_vcf_to_features/test.sh

cd-hit

• W binary-without-manpage
  • usr/bin/cdhit [amd64, i386]
  • usr/bin/cdhit-2d [amd64, i386]
  • usr/bin/cdhit-454 [amd64, i386]
  • usr/bin/cdhit-est [amd64, i386]
  • usr/bin/cdhit-est-2d [amd64, i386]
  • usr/bin/clstr2tree [amd64, i386]
  • usr/bin/clstr_merge [amd64, i386]
  • usr/bin/clstr_merge_noorder [amd64, i386]
  • usr/bin/clstr_reduce [amd64, i386]
  • usr/bin/clstr_renumber [amd64, i386]
  • usr/bin/clstr_rev [amd64, i386]
  • usr/bin/clstr_sort_by [amd64, i386]
  • usr/bin/clstr_sort_prot_by [amd64, i386]
  • usr/bin/make_multi_seq [amd64, i386]

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/centrifuge.git
  • vcs-git https://anonscm.debian.org/git/debian-med/centrifuge.git

centrifuge

• W zero-byte-file-in-doc-directory
  • usr/share/doc/centrifuge/html/manual.inc.html

• W build-depends-on-python-sphinx-only
• W python-foo-but-no-python3-foo
  • python-cfflib

cimg-doc

• W privacy-breach-generic
  • usr/share/doc/cimg-dev/html/img/video_blobs.html [<embed src="http://www.youtube.com/v/wocdcffz7z4?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/wocdcffz7z4?version=3)
  • usr/share/doc/cimg-dev/html/img/video_bubble.html [<embed src="http://www.youtube.com/v/oxk6wc4vsbe?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/oxk6wc4vsbe?version=3)
  • usr/share/doc/cimg-dev/html/img/video_bump.html [<embed src="http://www.youtube.com/v/ggjtelq5ahi?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ggjtelq5ahi?version=3)
  • usr/share/doc/cimg-dev/html/img/video_cimgdemo.html [<embed src="http://www.youtube.com/v/mtvhje_ff18?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/mtvhje_ff18?version=3)
  • usr/share/doc/cimg-dev/html/img/video_curveeditor.html [<embed src="http://www.youtube.com/v/vnctzhnxjvy?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/vnctzhnxjvy?version=3)
  • usr/share/doc/cimg-dev/html/img/video_doubletorus.html [<embed src="http://www.youtube.com/v/y1bhhxwsoa4?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/y1bhhxwsoa4?version=3)
  • usr/share/doc/cimg-dev/html/img/video_dtmri.html [<embed src="http://www.youtube.com/v/ip2ituxhcls?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ip2ituxhcls?version=3)
  • usr/share/doc/cimg-dev/html/img/video_fourier.html [<embed src="http://www.youtube.com/v/op0xovmedpe?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/op0xovmedpe?version=3)
  • usr/share/doc/cimg-dev/html/img/video_imagesurface.html [<embed src="http://www.youtube.com/v/olbxh-gkv3u?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/olbxh-gkv3u?version=3)
  • usr/share/doc/cimg-dev/html/img/video_jawbreaker.html [<embed src="http://www.youtube.com/v/3z4jdb-wafs?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/3z4jdb-wafs?version=3)
  • usr/share/doc/cimg-dev/html/img/video_landscape.html [<embed src="http://www.youtube.com/v/i8_wcewwpoo?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/i8_wcewwpoo?version=3)
  • usr/share/doc/cimg-dev/html/img/video_mandelbrot.html [<embed src="http://www.youtube.com/v/ir80v5r9ajm?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ir80v5r9ajm?version=3)
  • usr/share/doc/cimg-dev/html/img/video_menu.html [<embed src="http://www.youtube.com/v/t0tjzmytisg?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/t0tjzmytisg?version=3)
  • usr/share/doc/cimg-dev/html/img/video_metaballs.html [<embed src="http://www.youtube.com/v/-s_r76oxzyy?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/-s_r76oxzyy?version=3)
  • usr/share/doc/cimg-dev/html/img/video_minipaint.html [<embed src="http://www.youtube.com/v/4hbisksvzki?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/4hbisksvzki?version=3)
  • usr/share/doc/cimg-dev/html/img/video_plasma.html [<embed src="http://www.youtube.com/v/na8hcaykbfo?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/na8hcaykbfo?version=3)
  • usr/share/doc/cimg-dev/html/img/video_reflection.html [<embed src="http://www.youtube.com/v/5wqgkejdrcw?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/5wqgkejdrcw?version=3)
  • usr/share/doc/cimg-dev/html/img/video_shadebobs.html [<embed src="http://www.youtube.com/v/q91cyn6x8ly?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/q91cyn6x8ly?version=3)
  • usr/share/doc/cimg-dev/html/img/video_tetris.html [<embed src="http://www.youtube.com/v/iksy2kceh38?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/iksy2kceh38?version=3)
  • usr/share/doc/cimg-dev/html/img/video_waves.html [<embed src="http://www.youtube.com/v/kne-rxjlddm?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/kne-rxjlddm?version=3)

circos

• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/circos.1.gz

clearcut-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/68/c8f38bc26ee538663ba37be7dc0a2b32d43fc3.debug
  • usr/lib/debug/.build-id/ab/e44ff7c76203600a4e5783ff9ede636abb8086.debug

clonalorigin

• W binary-without-manpage
  • usr/bin/blocksplit [amd64, i386]
  • usr/bin/computeMedians [amd64, i386]
  • usr/bin/makeMauveWargFile [amd64, i386]

crac

• W binary-without-manpage
  • usr/bin/crac-client
  • usr/bin/crac-index
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/crac.1.gz

python-cram

• W binary-without-manpage
  • usr/bin/cram

python3-cram

• W binary-without-manpage
  • usr/bin/cram3

ctsim-doc

• W privacy-breach-generic
  • usr/share/doc/ctsim-doc/examples/simulate.html [<link rel="stylesheet" href="http://www.ctsim.org/main.css" type="text/css">] (http://www.ctsim.org/main.css)

• W ancient-python-version-field
  • x-python-version 2.5

• W debhelper-but-no-misc-depends
  • gis-tasks
• W package-uses-deprecated-debhelper-compat-version
  • 7

• W changelog-should-mention-nmu
• W debhelper-but-no-misc-depends
  • junior-tasks
• W source-nmu-has-incorrect-version-number
  • 1.28

• W debhelper-but-no-misc-depends
  • science-astronomy
  • science-astronomy-dev
  • science-tasks

• W debhelper-but-no-misc-depends
  • debichem-analytical-biochemistry
  • debichem-cheminformatics
  • debichem-crystallography
  • debichem-development
  • debichem-input-generation-output-processing
  • debichem-modelling
  • debichem-molecular-abinitio
  • debichem-molecular-dynamics
  • debichem-periodic-abinitio
  • debichem-semiempirical
  • debichem-tasks
  • debichem-view-edit-2d
  • debichem-visualisation
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser http://svn.debian.org/wsvn/blends/projects/debichem/trunk/debichem/
  • vcs-svn svn://svn.debian.org/blends/projects/debichem/trunk/debichem/

debichem-modelling

• W command-with-path-in-maintainer-script
  • prerm:20 /usr/sbin/blend-update-usermenus
• W priority-extra-is-replaced-by-priority-optional

• W debhelper-but-no-misc-depends
  • debichem-tasks

debichem-analytical-biochemistry

• E description-is-pkg-name
  • DebiChem Analytical BioChemistry
• W possible-unindented-list-in-extended-description

debichem-cheminformatics

• E description-is-pkg-name
  • DebiChem Cheminformatics

debichem-crystallography

• E description-is-pkg-name
  • DebiChem crystallography

debichem-molecular-dynamics

• E description-is-pkg-name
  • DebiChem Molecular Dynamics

dh-r

• W binary-without-manpage
  • usr/bin/dh_vignette
  • usr/bin/prepare_missing_cran_package
• W script-not-executable
  • usr/share/dh-r/r-cran.mk

dialign-tx

• W spelling-error-in-readme-debian
  • acces access

dicomscope

• W bad-jar-name
  • usr/share/java/DICOMscope-3.6.0.jar

dnaclust (3-6+b1; main)

• W binary-without-manpage
  • usr/bin/dnaclust-abun [amd64, i386]
  • usr/bin/dnaclust-ref [amd64, i386]
  • usr/bin/find-large-clusters [amd64, i386]
  • usr/bin/generate_test_clusters [amd64, i386]
  • usr/bin/star-align [amd64, i386]

ecopcr

• W binary-without-manpage
  • usr/bin/ecoPCRFilter [amd64, i386]
  • usr/bin/ecoSort [amd64, i386]

eigensoft

• W binary-without-manpage
  • usr/bin/baseprog [amd64, i386]
  • usr/bin/convertf [amd64, i386]
  • usr/bin/eigenstrat [amd64, i386]
  • usr/bin/eigenstratQTL [amd64, i386]
  • usr/bin/evec2pca [amd64, i386]
  • usr/bin/evec2pca-ped [amd64, i386]
  • usr/bin/gc-eigensoft [amd64, i386]
  • usr/bin/mergeit [amd64, i386]
  • usr/bin/pca [amd64, i386]
  • usr/bin/pcatoy [amd64, i386]
  • usr/bin/smartpca [amd64, i386]
  • usr/bin/smartrel [amd64, i386]
  • usr/bin/smshrink [amd64, i386]
  • usr/bin/twstats [amd64, i386]

• W debian-rules-should-not-use-custom-compression-settings
  • dh_builddeb -- -Z xz (line 129)

emboss-doc

• E doc-base-file-references-missing-file
  • domainatrix:13 /usr/share/doc/emboss-doc/doc/manuals/domainatrix.txt
  • emboss-apps:8 /usr/share/doc/emboss-doc/doc/programs/html/index.html
  • emboss-apps:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • emboss-groups:8 /usr/share/doc/emboss-doc/doc/programs/html/groups.html
  • emboss-groups:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • emboss-qg:11 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.pdf
  • emboss-qg:8 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.ps

emboss-test

• W csh-considered-harmful
  • usr/share/EMBOSS/test/memtest/purify.csh
  • usr/share/EMBOSS/test/memtest/valgrind.csh
  • usr/share/EMBOSS/test/qa/qatest.csh
• W privacy-breach-generic
  • usr/share/EMBOSS/test/data/memenew/ex1.html [<img src="http://meme.nbcr.net/meme/images/meme.png" alt="meme">] (http://meme.nbcr.net/meme/images/meme.png)

jemboss

• W binary-without-manpage
  • usr/bin/jemboss
  • usr/bin/runJemboss.sh
• W classpath-contains-relative-path
  • usr/share/EMBOSS/jemboss/lib/jemboss.jar: lib/jakarta-regexp-1.2.jar, lib/jalviewApplet.jar

entangle

• W non-dev-pkg-with-shlib-symlink
  • usr/lib/i386-linux-gnu/libentangle_backend.so.0.0.0 usr/lib/i386-linux-gnu/libentangle_backend.so [amd64, i386]
  • usr/lib/i386-linux-gnu/libentangle_frontend.so.0.0.0 usr/lib/i386-linux-gnu/libentangle_frontend.so [amd64, i386]
  • usr/lib/x86_64-linux-gnu/libentangle_backend.so.0.0.0 usr/lib/x86_64-linux-gnu/libentangle_backend.so [amd64, i386]
  • usr/lib/x86_64-linux-gnu/libentangle_frontend.so.0.0.0 usr/lib/x86_64-linux-gnu/libentangle_frontend.so [amd64, i386]
• W package-name-doesnt-match-sonames
  • libentangle-backend0 libentangle-frontend0 [amd64, i386]

gir1.2-entangle-0.1

• W gir-missing-typelib-dependency
  • usr/share/gir-1.0/Entangle-0.1.gir gir1.2-entangle-0.1
• W gir-section-not-libdevel
  • usr/share/gir-1.0/Entangle-0.1.gir introspection

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/epigrass.git
  • vcs-git https://anonscm.debian.org/git/debian-med/epigrass.git

epigrass

• W binary-without-manpage
  • usr/bin/neteditor [amd64, i386]

• W ancient-standards-version
  • 3.8.3 (released 2009-08-16) (current is 4.3.0)
• W debhelper-but-no-misc-depends
  • ezgo-accessories
  • ezgo-education
  • ezgo-games
  • ezgo-imaging
  • ezgo-multimedia
  • ezgo-network
  • ezgo-office
  • ezgo-tasks
• W dm-upload-allowed-is-obsolete
• W missing-debian-source-format
• W package-uses-deprecated-debhelper-compat-version
  • 7
• W vcs-browser-links-to-empty-view
  • http://svn.debian.org/wsvn/blends/projects/ezgo/trunk/debian-ezgo/?rev=0&sc=0
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser http://svn.debian.org/wsvn/blends/projects/ezgo/trunk/debian-ezgo/?rev=0&sc=0
  • vcs-svn svn://svn.debian.org/blends/projects/ezgo/trunk/debian-ezgo/

ezgo-accessories

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo Accessories
• W priority-extra-is-replaced-by-priority-optional

ezgo-education

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo Education
• W priority-extra-is-replaced-by-priority-optional

ezgo-games

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo Games
• W priority-extra-is-replaced-by-priority-optional

ezgo-imaging

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo imaging
• W priority-extra-is-replaced-by-priority-optional

ezgo-multimedia

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo multimedia
• W priority-extra-is-replaced-by-priority-optional

ezgo-network

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo network
• W priority-extra-is-replaced-by-priority-optional

ezgo-office

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo Office
• W priority-extra-is-replaced-by-priority-optional

ezgo-tasks

• W priority-extra-is-replaced-by-priority-optional

• W debian-source-options-has-custom-compression-settings
  • compression = "bzip2" (line 1)
  • compression-level = 9 (line 2)

fastlink

• W privacy-breach-generic
  • usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/left.gif" width="130" height="45" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/left.gif) [amd64, i386]
  • usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif" width="125" height="1" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif) [amd64, i386]
  • usr/share/doc/fastlink/fastlink.html [<link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css">] (http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css) [amd64, i386]

fastlink-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/b3/6938cf60b53cfb732491561c3440c3471c65aa.debug
  • usr/lib/debug/.build-id/bb/17609a3a55ee19b4a5e67fa74169b496104777.debug

libfest-reflect-java-doc

• W embedded-javascript-library
  • usr/share/doc/libfest-reflect-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libffindex0

• W package-name-doesnt-match-sonames
  • libffindex2.0.2 [amd64, i386]

• W debian-rules-uses-deprecated-makefile
  • line 8 /usr/share/cdbs/1/class/perlmodule.mk

findimagedupes

• W manpage-has-errors-from-pod2man
  • usr/share/man/man1/findimagedupes.1p.gz:387

fis-gtm-6.3-005

• W non-standard-dir-perm
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/ 0775 != 0755
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/plugin/gtmcrypt/ 0775 != 0755
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/utf8/gtmsecshrdir/ 0775 != 0755
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-005_x86_64/ 0775 != 0755
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-005_x86_64/plugin/gtmcrypt/ 0775 != 0755
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-005_x86_64/utf8/gtmsecshrdir/ 0775 != 0755
• W non-standard-file-perm
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDE.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEADD.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDECHANG.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEDELET.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEEXIT.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEGET.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEHELP.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEINIT.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEINITSZ.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDELOCKS.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDELOG.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEMAP.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEMSGIN.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEPARSE.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEPUT.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEQUIT.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDERENAM.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDESCAN.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDESETGD.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDESHOW.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDESPAWN.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDETEMPL.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GDEVERIF.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMDEFINEDTYPESTODB.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMDEFINEDTYPESTODB.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMDefinedTypesInitDebug.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMDefinedTypesInitDebug.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMDefinedTypesInitRelease.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMDefinedTypesInitRelease.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMHELP.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMHELP.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMHLPLD.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMHLPLD.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMTHREADGBLASM.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/GTMTHREADGBLASM.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/PINENTRY.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/PINENTRY.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_CONVBASEUTIL.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_CONVBASEUTIL.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_D.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_D.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_DATE.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_DATE.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_DH.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_DH.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_DO.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_DO.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_DSEWRAP.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_DSEWRAP.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_DUMPFHEAD.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_DUMPFHEAD.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_EXP.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_EXP.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_FL.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_FL.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_FREECNT.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_FREECNT.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_G.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_G.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GBLDEF.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GBLDEF.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GC.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GC.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GCE.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GCE.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GD.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GD.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GED.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GED.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GI.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GI.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GO.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GO.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GSE.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GSE.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GSEL.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_GSEL.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_H.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_H.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-005_i686/_HD.m 0664 != 0644
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  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-005_x86_64/plugin/gtmcrypt/README 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-005_x86_64/plugin/gtmcrypt/gtm_tls_impl.c 0664 != 0644
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freebayes

• W binary-without-manpage
  • usr/bin/bamleftalign
  • usr/bin/freebayes

• W debian-rules-should-not-use-custom-compression-settings
  • dh_builddeb -- -Z xz (line 113)
• W debian-rules-uses-unnecessary-dh-argument
  • dh ... --parallel (line 55)
• W dep5-copyright-license-name-not-unique
  • bsd-revised (paragraph at line 174)
  • pd (paragraph at line 167)
• W incomplete-creative-commons-license
  • cc-by-sa-3.0 (paragraph at line 149)
• W obsolete-url-in-packaging
  • debian/copyright http://code.google.com/p/freemedforms/downloads/list
• W patch-file-present-but-not-mentioned-in-series
  • 076_freeaccount-quit-segfaulting
  • 076_hurd_glibc_install
  • 076_rpath_hurd_glibc
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/freemedforms-project.git
  • vcs-git https://anonscm.debian.org/git/debian-med/freemedforms-project.git

freemedforms-libs

• W package-has-unnecessary-activation-of-ldconfig-trigger

• W debian-rules-sets-dpkg-architecture-variable
  • DEB_BUILD_ARCH (line 7)

libg20 (0.72-8+b1; main)

• W package-name-doesnt-match-sonames
  • libg2-0.72 [amd64, i386]

• W dep5-copyright-license-name-not-unique
  • (paragraph at line 134)
  • (paragraph at line 141)
  • (paragraph at line 315)
  • (paragraph at line 366)
  • gpl-1+ (paragraph at line 38)
• W missing-license-paragraph-in-dep5-copyright
  • artistic (paragraph at line 82)
  • artistic-2.0 (paragraph at line 129)
  • gpl-1+ (paragraph at line 129)
  • mit (paragraph at line 100)

gbrowse

• W binary-without-manpage
  • usr/bin/gbrowse_configure_slaves
• W maintainer-script-should-not-use-recursive-chown-or-chmod
  • postinst:11
  • postinst:12
  • postinst:13
  • postinst:14
  • postinst:16
• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm.gz
  • usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::Status.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/Bio::DB::SeqFeature::Store::Alias.3pm.gz 263: warning [p 2, 9.5i]: can't break line
  • usr/share/man/man3/Bio::Graphics::Browser2::PluginSet.3pm.gz 144: warning [p 1, 1.8i, div `an-div', 0.2i]: can't break line
• W script-not-executable
  • etc/default/gbrowse-aws-balancer
  • etc/default/gbrowse-slave

gbrowse-data

• W maintainer-script-should-not-use-recursive-chown-or-chmod
  • postinst:7
  • postinst:8

genometester

• W binary-without-manpage
  • usr/bin/gdistribution [amd64, i386]

• W python-foo-but-no-python3-foo
  • python-genometools

• W inconsistent-appstream-metadata-license
  • client/appdata.xml (cc0-1.0 != gpl-2+)

libhmmer2-dev

• E pkg-config-multi-arch-wrong-dir
  • usr/lib/i386-linux-gnu/pkgconfig/libhmmer2.pc full text contains architecture specific dir x86_64-linux-gnu

libhtsjdk-java-doc

• W embedded-javascript-library
  • usr/share/doc/libhtsjdk-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libhts-dev

• W manpage-has-errors-from-man
  • usr/share/man/man5/faidx.5.gz file `<standard input>', around line 49: [amd64, i386]
  • usr/share/man/man5/vcf.5.gz file `<standard input>', around line 39: [amd64, i386]

hyphy-mpi

• W binary-without-manpage
  • usr/bin/hyphympi [amd64, i386]

hyphy-pt

• W binary-without-manpage
  • usr/bin/hyphymp

libicu4j-java-doc

• W embedded-javascript-library
  • usr/share/doc/libicu4j-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libicu4j-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

invesalius

• W executable-not-elf-or-script
  • usr/share/invesalius/invesalius/data/viewer_slice.py
  • usr/share/invesalius/invesalius/data/viewer_volume.py
  • usr/share/invesalius/invesalius/gui/widgets/gradient.py

ipig

• W bad-jar-name
  • usr/share/java/iPiG-0.0.r5.jar [amd64, i386]

iva

• W package-installs-java-bytecode
  • usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class
  • usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class
  • usr/lib/python3/dist-packages/iva/gage/SizeFasta.class
  • usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class
  • usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class
  • usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class
  • usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class
  • usr/lib/python3/dist-packages/iva/gage/Utils.class
  • usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$1.class
  • usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class
  • usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class

libjam-java-doc

• W embedded-javascript-library
  • usr/share/doc/libjam-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libjam-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libjam-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libjam-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libjam-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libjam-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libjebl2-java-doc

• W embedded-javascript-library
  • usr/share/doc/libjebl2-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libjebl2-java/api/jquery/jquery-1.10.2.js please use libjs-jquery
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

jmodeltest

• W binary-without-manpage
  • usr/bin/runjmodeltest-cluster

lamarc

• W binary-without-manpage
  • usr/bin/lam_conv [amd64, i386]
  • usr/bin/lamarc [amd64, i386]

last-align

• W binary-without-manpage
  • usr/bin/lastdb8
  • usr/bin/maf-cut
  • usr/bin/parallel-fasta
  • usr/bin/parallel-fastq

lefse

• W binary-without-manpage
  • usr/bin/format_input
  • usr/bin/lefse2circlader
  • usr/bin/plot_cladogram
  • usr/bin/plot_features
  • usr/bin/plot_res
  • usr/bin/qiime2lefse
  • usr/bin/run_lefse

libace-perl (1.92-8+b1; main)

• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Ace.3pm.gz:1195 [amd64, i386]
  • usr/share/man/man3/Ace::Graphics::GlyphFactory.3pm.gz:191 [amd64, i386]
  • usr/share/man/man3/Ace::Sequence::GappedAlignment.3pm.gz:156 [amd64, i386]
  • usr/share/man/man3/Ace::Sequence::Gene.3pm.gz:169 [amd64, i386]
  • usr/share/man/man3/Ace::Sequence::Transcript.3pm.gz:169 [amd64, i386]

libbio-graphics-perl

• W binary-without-manpage
  • usr/bin/bam_coverage_windows
  • usr/bin/coverage_to_topoview
  • usr/bin/glyph_help
  • usr/bin/render_msa
• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Graphics::Glyph::fb_shmiggle.3pm.gz
  • usr/share/man/man3/Bio::Graphics::Wiggle::Loader.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/Bio::Graphics::Glyph::decorated_transcript.3pm.gz 160: warning [p 1, 5.5i]: can't break line
  • usr/share/man/man3/Bio::Graphics::Glyph::hybrid_plot.3pm.gz 161: warning [p 1, 5.5i]: can't break line
  • usr/share/man/man3/Bio::Graphics::Glyph::ideogram.3pm.gz 302: warning [p 3, 2.5i]: can't break line
  • usr/share/man/man3/Bio::Graphics::Glyph::vista_plot.3pm.gz 169: warning [p 1, 6.5i]: can't break line
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::Graphics::FeatureDir.3pm.gz:222

libbio-mage-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::MAGE::Association.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::MAGE::Array::Array.3pm.gz:1069
  • usr/share/man/man3/Bio::MAGE::Array::ArrayGroup.3pm.gz:1266
  • usr/share/man/man3/Bio::MAGE::Array::ArrayManufacture.3pm.gz:1078
  • usr/share/man/man3/Bio::MAGE::Array::ArrayManufactureDeviation.3pm.gz:551
  • usr/share/man/man3/Bio::MAGE::Array::FeatureDefect.3pm.gz:572
  • usr/share/man/man3/Bio::MAGE::Array::Fiducial.3pm.gz:739
  • usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMS.3pm.gz:788
  • usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMSBiomaterial.3pm.gz:919
  • usr/share/man/man3/Bio::MAGE::Array::PositionDelta.3pm.gz:568
  • usr/share/man/man3/Bio::MAGE::Array::ZoneDefect.3pm.gz:572
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ArrayDesign.3pm.gz:1082
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::CompositeGroup.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::DesignElementGroup.3pm.gz:799
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::FeatureGroup.3pm.gz:1131
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::PhysicalArrayDesign.3pm.gz:1185
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ReporterGroup.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::Zone.3pm.gz:1005
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneGroup.3pm.gz:765
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneLayout.3pm.gz:658
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Audit.3pm.gz:737
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Contact.3pm.gz:1003
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Organization.3pm.gz:1053
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Person.3pm.gz:1182
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Security.3pm.gz:808
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::SecurityGroup.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BQS::BibliographicReference.3pm.gz:1148
  • usr/share/man/man3/Bio::MAGE::BioAssay::BioAssay.3pm.gz:812
  • usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayCreation.3pm.gz:906
  • usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayTreatment.3pm.gz:846
  • usr/share/man/man3/Bio::MAGE::BioAssay::Channel.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssay::DerivedBioAssay.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioAssay::FeatureExtraction.3pm.gz:842
  • usr/share/man/man3/Bio::MAGE::BioAssay::Hybridization.3pm.gz:902
  • usr/share/man/man3/Bio::MAGE::BioAssay::Image.3pm.gz:840
  • usr/share/man/man3/Bio::MAGE::BioAssay::ImageAcquisition.3pm.gz:902
  • usr/share/man/man3/Bio::MAGE::BioAssay::MeasuredBioAssay.3pm.gz:915
  • usr/share/man/man3/Bio::MAGE::BioAssay::PhysicalBioAssay.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayData.3pm.gz:935
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDatum.3pm.gz:617
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMapping.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataCube.3pm.gz:523
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataTuples.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataValues.3pm.gz:440
  • usr/share/man/man3/Bio::MAGE::BioAssayData::CompositeSequenceDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DerivedBioAssayData.3pm.gz:983
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementDimension.3pm.gz:694
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMap.3pm.gz:753
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMapping.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::FeatureDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::MeasuredBioAssayData.3pm.gz:936
  • usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMapping.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::ReporterDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::Transformation.3pm.gz:996
  • usr/share/man/man3/Bio::MAGE::BioEvent::BioEvent.3pm.gz:759
  • usr/share/man/man3/Bio::MAGE::BioEvent::Map.3pm.gz:753
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterial.3pm.gz:917
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterialMeasurement.3pm.gz:525
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioSample.3pm.gz:962
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioSource.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioMaterial::Compound.3pm.gz:900
  • usr/share/man/man3/Bio::MAGE::BioMaterial::CompoundMeasurement.3pm.gz:525
  • usr/share/man/man3/Bio::MAGE::BioMaterial::LabeledExtract.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioMaterial::Treatment.3pm.gz:1007
  • usr/share/man/man3/Bio::MAGE::BioSequence::BioSequence.3pm.gz:1191
  • usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeature.3pm.gz:705
  • usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeatureLocation.3pm.gz:583
  • usr/share/man/man3/Bio::MAGE::BioSequence::SequencePosition.3pm.gz:527
  • usr/share/man/man3/Bio::MAGE::Describable.3pm.gz:622
  • usr/share/man/man3/Bio::MAGE::Description::Database.3pm.gz:838
  • usr/share/man/man3/Bio::MAGE::Description::DatabaseEntry.3pm.gz:660
  • usr/share/man/man3/Bio::MAGE::Description::Description.3pm.gz:915
  • usr/share/man/man3/Bio::MAGE::Description::ExternalReference.3pm.gz:611
  • usr/share/man/man3/Bio::MAGE::Description::OntologyEntry.3pm.gz:675
  • usr/share/man/man3/Bio::MAGE::DesignElement::CompositeCompositeMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::DesignElement::CompositePosition.3pm.gz:628
  • usr/share/man/man3/Bio::MAGE::DesignElement::CompositeSequence.3pm.gz:915
  • usr/share/man/man3/Bio::MAGE::DesignElement::DesignElement.3pm.gz:740
  • usr/share/man/man3/Bio::MAGE::DesignElement::Feature.3pm.gz:1043
  • usr/share/man/man3/Bio::MAGE::DesignElement::FeatureInformation.3pm.gz:538
  • usr/share/man/man3/Bio::MAGE::DesignElement::FeatureLocation.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::DesignElement::FeatureReporterMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::DesignElement::MismatchInformation.3pm.gz:566
  • usr/share/man/man3/Bio::MAGE::DesignElement::Position.3pm.gz:568
  • usr/share/man/man3/Bio::MAGE::DesignElement::Reporter.3pm.gz:964
  • usr/share/man/man3/Bio::MAGE::DesignElement::ReporterCompositeMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::DesignElement::ReporterPosition.3pm.gz:628
  • usr/share/man/man3/Bio::MAGE::Experiment::Experiment.3pm.gz:988
  • usr/share/man/man3/Bio::MAGE::Experiment::ExperimentDesign.3pm.gz:919
  • usr/share/man/man3/Bio::MAGE::Experiment::ExperimentalFactor.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::Experiment::FactorValue.3pm.gz:829
  • usr/share/man/man3/Bio::MAGE::Extendable.3pm.gz:486
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster.3pm.gz:795
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::Node.3pm.gz:778
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeContents.3pm.gz:739
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeValue.3pm.gz:662
  • usr/share/man/man3/Bio::MAGE::Identifiable.3pm.gz:746
  • usr/share/man/man3/Bio::MAGE::Measurement::ConcentrationUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::DistanceUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::MassUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::Measurement.3pm.gz:662
  • usr/share/man/man3/Bio::MAGE::Measurement::QuantityUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::TemperatureUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::TimeUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::Unit.3pm.gz:494
  • usr/share/man/man3/Bio::MAGE::Measurement::VolumeUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::NameValueType.3pm.gz:563
  • usr/share/man/man3/Bio::MAGE::Protocol::Hardware.3pm.gz:1050
  • usr/share/man/man3/Bio::MAGE::Protocol::HardwareApplication.3pm.gz:750
  • usr/share/man/man3/Bio::MAGE::Protocol::Parameter.3pm.gz:782
  • usr/share/man/man3/Bio::MAGE::Protocol::ParameterValue.3pm.gz:523
  • usr/share/man/man3/Bio::MAGE::Protocol::Parameterizable.3pm.gz:797
  • usr/share/man/man3/Bio::MAGE::Protocol::ParameterizableApplication.3pm.gz:665
  • usr/share/man/man3/Bio::MAGE::Protocol::Protocol.3pm.gz:1050
  • usr/share/man/man3/Bio::MAGE::Protocol::ProtocolApplication.3pm.gz:930
  • usr/share/man/man3/Bio::MAGE::Protocol::Software.3pm.gz:1007
  • usr/share/man/man3/Bio::MAGE::Protocol::SoftwareApplication.3pm.gz:795
  • usr/share/man/man3/Bio::MAGE::QuantitationType::ConfidenceIndicator.3pm.gz:1040
  • usr/share/man/man3/Bio::MAGE::QuantitationType::DerivedSignal.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::Error.3pm.gz:1041
  • usr/share/man/man3/Bio::MAGE::QuantitationType::ExpectedValue.3pm.gz:1041
  • usr/share/man/man3/Bio::MAGE::QuantitationType::Failed.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::MeasuredSignal.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::PValue.3pm.gz:1041
  • usr/share/man/man3/Bio::MAGE::QuantitationType::PresentAbsent.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::QuantitationType.3pm.gz:992
  • usr/share/man/man3/Bio::MAGE::QuantitationType::Ratio.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::SpecializedQuantitationType.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::StandardQuantitationType.3pm.gz:1000

libbio-mage-utils-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyClassEntry.3pm.gz
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyEntry.3pm.gz
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyHelper.3pm.gz
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyPropertyEntry.3pm.gz
  • usr/share/man/man3/Bio::MAGE::XML::Handler.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::MAGE::SQLUtils.3pm.gz:97
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyClassEntry.3pm.gz:140
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyEntry.3pm.gz:123
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyPropertyEntry.3pm.gz:114
  • usr/share/man/man3/Bio::MAGE::XML::Handler.3pm.gz:99
  • usr/share/man/man3/Bio::MAGE::XML::Reader.3pm.gz:210
  • usr/share/man/man3/Bio::MAGE::XML::Writer.3pm.gz:306

libbpp-phyl12

• E symbols-file-contains-current-version-with-debian-revision
  • on symbol _ZN3bpp17TreeTemplateTools9getLeafIdERKNS_4NodeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base and 33 others

libbpp-phyl-omics3

• E symbols-file-contains-current-version-with-debian-revision
  • on symbol _ZN3bpp14DistanceMatrixclEjj@Base and 98 others

libejml-java

• W bad-jar-name
  • usr/share/java/EJML-0.28.jar

libexternalsortinginjava-java-doc

• W embedded-javascript-library
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W debian-rules-should-not-use-custom-compression-settings
  • dh_builddeb -- -Z xz (line 39)

libfastutil-java-doc

• W embedded-javascript-library
  • usr/share/doc/libfastutil-java/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libfastutil-java/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libfastutil-java/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libfastutil-java/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libfastutil-java/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libfastutil-java/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 1.3.11+svn20110227.4616-2

libgkarrays1-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/65/46bc9c4f4b11661a4cc17e55cd9fb66fce3329.debug
  • usr/lib/debug/.build-id/f9/f907f735b53910edf30d4579c87522085dfaeb.debug

libgzstream0-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/09/77ca84188e9a3151b77312d51fcb020927f809.debug
  • usr/lib/debug/.build-id/ef/bfac1ef731695816c1b729e190581862d6214c.debug

libhac-java-doc

• W embedded-javascript-library
  • usr/share/doc/libhac-java-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libhac-java-doc/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libhmsbeagle1v5

• W dev-pkg-without-shlib-symlink
  • usr/lib/i386-linux-gnu/libhmsbeagle-jni.so usr/lib/i386-linux-gnu/libhmsbeagle-jni.so
  • usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so
• W shlib-without-versioned-soname
  • usr/lib/i386-linux-gnu/libhmsbeagle-jni.so libhmsbeagle-jni.so
  • usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so libhmsbeagle-jni.so

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/libjsonp-java.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/libjsonp-java.git

liblemon-utils

• W binary-without-manpage
  • usr/bin/dimacs-solver [amd64, i386]
  • usr/bin/dimacs-to-lgf [amd64, i386]
  • usr/bin/lgf-gen [amd64, i386]

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libmems.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libmems.git

• W patch-file-present-but-not-mentioned-in-series
  • libhdf5-1.10.patch
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libminc.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libminc.git

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libmuscle.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libmuscle.git

libmuscle1

• E symbols-file-contains-current-version-with-debian-revision
  • on symbol _ZNSt6vectorIcSaIcEE7reserveEj@Base

ncl-tools

• W binary-without-manpage
  • usr/bin/checktaxonnodes [amd64, i386]
  • usr/bin/findunsupportededges [amd64, i386]
  • usr/bin/otTreeInspect [amd64, i386]
  • usr/bin/otsubtree [amd64, i386]
  • usr/bin/outdeg1count [amd64, i386]

liboptions-java-doc

• W embedded-javascript-library
  • usr/share/doc/liboptions-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/liboptions-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/liboptions-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/liboptions-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/liboptions-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/liboptions-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W obsolete-url-in-packaging
  • debian/copyright http://download.berlios.de/qtiplot/
  • debian/watch http://download.berlios.de/qtiplot/liborigin2-([0-9]*)\.zip
• W spelling-error-in-patch-description
  • debian/patches/01_makefile.diff unneccessary unnecessary

liborigin2-1v5-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/44/18041f37651bcc7a538f38ac0c88402eda5b96.debug
  • usr/lib/debug/.build-id/fc/810255bf73949bc2a875492873924161868f9d.debug

libpal-java-doc

• W embedded-javascript-library
  • usr/share/doc/libpal-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libpal-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W debian-watch-file-should-mangle-version
  • line 8

• W python-foo-but-no-python3-foo
  • python-corepywrap

• W spelling-error-in-patch-description
  • debian/patches/swig-3.x.patch with with (duplicate word) with
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libsbml.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libsbml.git

libsbml5-cil

• E portable-executable-missing-security-features
  • usr/lib/i386-linux-gnu/mono/libsbmlcsP/libsbmlcsP.dll SafeSEH
  • usr/lib/x86_64-linux-gnu/mono/libsbmlcsP/libsbmlcsP.dll SafeSEH

libsbml5-java

• W needless-dependency-on-jre

libsis-base-java

• W bad-jar-name
  • usr/share/java/sis-base-18.09~pre1+git20180827.fe4953e+dfsg.jar

libsis-base-jni

• W package-has-unnecessary-activation-of-ldconfig-trigger

• W global-files-wildcard-not-first-paragraph-in-dep5-copyright
  • (paragraph at line 12)

• W maintainer-upload-has-incorrect-version-number
  • 1.6.3-2.1

libtfbs-perl (0.7.1-2+b1; main)

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/TFBS::SitePair.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/TFBS::DB::JASPAR.3pm.gz 160: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR2.3pm.gz 231: warning [p 3, 2.2i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR4.3pm.gz 173: warning [p 2, 4.0i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR5.3pm.gz 160: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR6.3pm.gz 160: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR7.3pm.gz 160: warning [p 2, 1.8i]: can't break line
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/TFBS::Matrix::Alignment.3pm.gz:196

libvcflib-tools

• W binary-without-manpage
  • usr/bin/vcfstreamsort
  • usr/bin/vcfuniq

libvcflib-tools-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/00/1e41cd79320b7f8ec0c4687091f4fbd6eb774b.debug
  • usr/lib/debug/.build-id/02/8af48d6adbfa1fc5442dc6eb832e00541893d6.debug
  • usr/lib/debug/.build-id/06/3238c0bd635b9f0fe87ecc1dd198928f04c0a4.debug
  • usr/lib/debug/.build-id/0a/992aa147b3fa1b4ca7effeeccaf5f2d06e83f8.debug
  • usr/lib/debug/.build-id/0a/f890a158035adf137ec596f18d8a6000cb4bd5.debug
  • usr/lib/debug/.build-id/0f/7e31fa5d6c70613e80498f3fea8ef6c1b26a19.debug
  • usr/lib/debug/.build-id/19/2aca64e73568918d23ab9f54eae4b052d489d6.debug
  • usr/lib/debug/.build-id/1a/96351de0f27ef2735232404b9bf95a679e59ba.debug
  • usr/lib/debug/.build-id/1e/62fdf63bd905b2b3aac12ecf9adc586ed3daf1.debug
  • usr/lib/debug/.build-id/1f/f55cc39294747a86e66a3da2828e4f420f9acb.debug
  • usr/lib/debug/.build-id/25/79346f1f96df5ba7cf468990ee1438d671eb66.debug
  • usr/lib/debug/.build-id/26/d680862331eca99a34a3e9723a3f1b05e2c46a.debug
  • usr/lib/debug/.build-id/27/8490ef536f038756c838d30a93eb4bd607c10d.debug
  • usr/lib/debug/.build-id/28/2809b3b99b504c03f7e5a919cf4fa0a0728d40.debug
  • usr/lib/debug/.build-id/29/ca6db552ed3bb8a322c8b969f139c072e698b9.debug
  • usr/lib/debug/.build-id/2d/2fb6ded652fd37066904fcd6d9a6ca112d227e.debug
  • usr/lib/debug/.build-id/2f/d7d563b4829d7343c6623bf5d3640da912465e.debug
  • usr/lib/debug/.build-id/2f/f24e8765b54a70c4771c5338325238dca4b17e.debug
  • usr/lib/debug/.build-id/37/5f1bbd2a36ad75fd5e31691409ff25e842a9e1.debug
  • usr/lib/debug/.build-id/3a/ac56c1f00fad10aa244351331cc0d55d89d04f.debug
  • usr/lib/debug/.build-id/3b/83a1684cd80a95e373cb0647ec4a7d832e9965.debug
  • usr/lib/debug/.build-id/3f/09f1c52be849b3e4ca05411bceb3bb0fe97e89.debug
  • usr/lib/debug/.build-id/40/7b3be9504e09845f6b0c36409867f958fe2178.debug
  • usr/lib/debug/.build-id/40/94c1a1ba0d41aae2e4260e46b32e1ce941bb2b.debug
  • usr/lib/debug/.build-id/45/a50651773b02bea3503f3e758e770187de1d7c.debug
  • usr/lib/debug/.build-id/4e/4afcd8dc2e0b46b3c187b6ad198ac66ebaed24.debug
  • usr/lib/debug/.build-id/52/80df9add3c702ae6ebc286b1d289f5dd0c64cb.debug
  • usr/lib/debug/.build-id/54/9f48008eb8e2ace12b269947ea94209989dade.debug
  • usr/lib/debug/.build-id/55/96032423ac3a9d788a00efcfa84026141f3503.debug
  • usr/lib/debug/.build-id/57/5b8455b9cc1f83353f4b07d03c590c6c184593.debug
  • usr/lib/debug/.build-id/58/acaaa328ccf10ddf4c1ccede054a631d980be1.debug
  • usr/lib/debug/.build-id/59/f0f11534fdbe661e9570ad2ea3ca66945f2528.debug
  • usr/lib/debug/.build-id/5b/f6415064766bf656ea57d601db8d67f336656d.debug
  • usr/lib/debug/.build-id/60/727e08f7207bd317e8a20a96fa74b8dbd5d0b4.debug
  • usr/lib/debug/.build-id/68/396e9d399368565828f26cd6947bc0156579bb.debug
  • usr/lib/debug/.build-id/72/2fe5e349d7f457cf9b465b1a1b389ed17356c2.debug
  • usr/lib/debug/.build-id/73/c3e1179162342f81faa124056838a759aa0428.debug
  • usr/lib/debug/.build-id/75/7a058cf48aa402211ed21e8fdd84bfc66f0e87.debug
  • usr/lib/debug/.build-id/76/cdfa807f9e99c6388afa75fac436bb241a943a.debug
  • usr/lib/debug/.build-id/7d/5c7a9d5be8f982256b124fb5c2bb1beadf1ec9.debug
  • usr/lib/debug/.build-id/88/89ea20f74c0f1e67c39edbaf343ac059f32d62.debug
  • usr/lib/debug/.build-id/89/6a71aa489cd7835d0960166b49471595950ac1.debug
  • usr/lib/debug/.build-id/8a/fd5633839dc4a88db020b3e53ecdbe2d9e0d15.debug
  • usr/lib/debug/.build-id/8b/8fd0ea507084e27873d16fd53361f2111c2a12.debug
  • usr/lib/debug/.build-id/8c/2d1369ddb76c0a6506a4f236e009dafaf268a4.debug
  • usr/lib/debug/.build-id/8d/29e08857f90205ba17ee905cb2cded7500b41c.debug
  • usr/lib/debug/.build-id/8f/293ab401df24cbf60e64d9e56da738bce43680.debug
  • usr/lib/debug/.build-id/90/f5549b5fcf6e6ad34fa53fe9e229e1f4a48192.debug
  • usr/lib/debug/.build-id/93/62fd22a499e1afec1cbff723d85ad43edae9eb.debug
  • usr/lib/debug/.build-id/93/bcbeaf7ecc751a000e9569371289d75f8c7a6d.debug
  • usr/lib/debug/.build-id/95/99e4ca0d16305c4898b0ec8145dfa6a19cb28b.debug
  • usr/lib/debug/.build-id/95/ffecc3da0117e2bca8df002e28dcf3f17401e7.debug
  • usr/lib/debug/.build-id/97/1e4de0938ab3cd71eae695e129e860c2831bc6.debug
  • usr/lib/debug/.build-id/9a/0719b79c589c66c00be4ea9dbfc3a835570862.debug
  • usr/lib/debug/.build-id/9c/c5db05de59155d2d0db54758a6f773e7d730fe.debug
  • usr/lib/debug/.build-id/9d/bd6f708c4dabf59efe30f4af824c45aac11d37.debug
  • usr/lib/debug/.build-id/9e/75f91e0f64c763fef5a5722b9c6b6b76ce72f5.debug
  • usr/lib/debug/.build-id/a5/1e833687a2e8fc4fcc8ae99023e10b48270f62.debug
  • usr/lib/debug/.build-id/a5/e23743f8d66336e0d8253c925c543ea2ad4a60.debug
  • usr/lib/debug/.build-id/b6/165851399a2c2afa055cd71d4ddb24251a78b9.debug
  • usr/lib/debug/.build-id/b7/e7fa3e50d2787a86f5f356f8396eac647da82c.debug
  • usr/lib/debug/.build-id/bc/4bd65c9855002f4b9c99dac39d098382bfe3c5.debug
  • usr/lib/debug/.build-id/c1/304f1802635eabc5c46d8a21d80f7869849057.debug
  • usr/lib/debug/.build-id/c4/0e45a96505a295f1198c7bae8372367144417b.debug
  • usr/lib/debug/.build-id/c4/b9b13858c2158912dfa754c4560ec6cdfd9dc1.debug
  • usr/lib/debug/.build-id/c7/ef0f9f3d7a518ed33dced79b2f06fa8a2ca81a.debug
  • usr/lib/debug/.build-id/c9/d0ed2ee9a3bca327fed11dad38fc03c2219f8f.debug
  • usr/lib/debug/.build-id/d0/38830108ac74447a878dbacb841158ae97ca63.debug
  • usr/lib/debug/.build-id/d3/0f8c4410f61aba3b2a92c70a62912961971b19.debug
  • usr/lib/debug/.build-id/d3/984a38a86a4ef42c4bffe18aa01bd1c14aa4dd.debug
  • usr/lib/debug/.build-id/d5/40aac79c5e7de4b33bac1e90e47b6c86209c74.debug
  • usr/lib/debug/.build-id/dd/0a1ea49939b9bebbfd8d79d05eb337e912c030.debug
  • usr/lib/debug/.build-id/e1/4269abe0a74df9990856f44a3c89844bb86896.debug
  • usr/lib/debug/.build-id/e7/1b0ae4de12528707cca06f0b3444dfc091f923.debug
  • usr/lib/debug/.build-id/e9/bd98d6b1581e327eefef7486c3855f038c3a40.debug
  • usr/lib/debug/.build-id/ee/4a92058dec5e2459ea344c665b391552ed66a1.debug
  • usr/lib/debug/.build-id/f0/10714173125250683ffbbd05ccf7c68a419695.debug
  • usr/lib/debug/.build-id/f0/acfd4a0f4caf6da7789e593d37584874f162f6.debug
  • usr/lib/debug/.build-id/f0/ea895a06102d60993109e9f852eabd2b0d3f7b.debug
  • usr/lib/debug/.build-id/f2/8d48983ac5a5a597f5b2ba29d5789d1f5f3922.debug
  • usr/lib/debug/.build-id/f3/3030aa9450ae9a17ef6bc1dd8f9b9dd4401885.debug
  • usr/lib/debug/.build-id/f6/331ba46ff38c92b20828f3883cef651aa3baa7.debug
  • usr/lib/debug/.build-id/f6/f5859029d08cfb1fec55ebb3ca570eb7a86c85.debug
  • usr/lib/debug/.build-id/f7/2d1dd16e3b13bf26c4980a0a8bb1a1b4c1bc34.debug
  • usr/lib/debug/.build-id/f9/97fd84c9078b597f0538029bbb10b3103f5aa5.debug
  • usr/lib/debug/.build-id/fc/3951debf1166e80c7ab63edff178f29e288b7c.debug

libzeus-jscl-java-doc

• W embedded-javascript-library
  • usr/share/doc/libzeus-jscl-java/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libzeus-jscl-java/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libzeus-jscl-java/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libzeus-jscl-java/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libzeus-jscl-java/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libzeus-jscl-java/jquery/jquery-ui.min.js please use libjs-jquery-ui

maq

• W manpage-has-errors-from-man
  • usr/share/man/man1/maq.1.gz 32: warning: macro `Tr' not defined [amd64, i386]

• W debhelper-tools-from-autotools-dev-are-deprecated
  • dh ... --with autotools_dev (line 6)
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/maude.git
  • vcs-git https://anonscm.debian.org/git/debian-med/maude.git

mauve-aligner

• W bad-jar-name
  • usr/share/java/Mauve.jar [amd64, i386]
• W binary-without-manpage
  • usr/bin/mauve [amd64, i386]
  • usr/bin/mauve-contig-mover [amd64, i386]

• W debian-source-options-has-custom-compression-settings
  • compression = "xz" (line 1)
• W patch-file-present-but-not-mentioned-in-series
  • uzip_528239.patch

mc

• W uses-dpkg-database-directly
  • usr/lib/mc/extfs.d/apt+
  • usr/lib/mc/extfs.d/debd
  • usr/lib/mc/extfs.d/dpkg+

mcl

• W binary-without-manpage
  • usr/bin/clxdo

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/melting.git
  • vcs-git https://anonscm.debian.org/git/debian-med/melting.git

metaphlan2

• W executable-not-elf-or-script
  • usr/share/metaphlan2/__init__.py
  • usr/share/metaphlan2/_metaphlan2.py
  • usr/share/metaphlan2/plugin_setup.py

microbegps

• W binary-without-manpage
  • usr/bin/MicrobeGPS

chimeraslayer

• E wrong-path-for-interpreter
  • usr/lib/ChimeraSlayer/ChimeraParentSelector/CM_plotter.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraParentSelector/CPC_to_CPS.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraParentSelector/CPS_to_RENAST.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraParentSelector/run_chimeraParentSelector.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraPhyloChecker/CPS_to_CPC.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraSlayer.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/PerlLib/NAST_to_Eco_coords.pm (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/PerlLib/TaxonomyGraph.pm (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/util/CMCS_to_treeImg.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/util/CS_add_taxonomy.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/util/breakpoint_to_profile.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/util/merge_CM_CS_outputs.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/util/merge_CS_n_CM_breakpoints.pl (#!/usr/bin/env perl != /usr/bin/perl)

microbiomeutil-data

• E wrong-path-for-interpreter
  • usr/share/doc/microbiomeutil-data/examples/NAST-iEr/testForUtils.pl (#!/usr/bin/env perl != /usr/bin/perl)

nast-ier

• E wrong-path-for-interpreter
  • usr/lib/NAST-iEr/PerlLib/Nuc_translator.pm (#!/usr/bin/env perl != /usr/bin/perl) [amd64, i386]
  • usr/lib/NAST-iEr/iterative_refinement/compare_DBs.pl (#!/usr/bin/env perl != /usr/bin/perl) [amd64, i386]
  • usr/lib/NAST-iEr/iterative_refinement/iteratively_realign_db_selfsearch.pl (#!/usr/bin/env perl != /usr/bin/perl) [amd64, i386]
  • usr/lib/NAST-iEr/iterative_refinement/quant_differences.pl (#!/usr/bin/env perl != /usr/bin/perl) [amd64, i386]
  • usr/lib/NAST-iEr/run_NAST-iEr.pl (#!/usr/bin/env perl != /usr/bin/perl) [amd64, i386]
  • usr/lib/NAST-iEr/util/apply_NAST_MASK.pl (#!/usr/bin/env perl != /usr/bin/perl) [amd64, i386]
  • usr/lib/NAST-iEr/util/mfasta_remove_allGapCols.pl (#!/usr/bin/env perl != /usr/bin/perl) [amd64, i386]
  • usr/lib/NAST-iEr/util/mfasta_remove_gaps.pl (#!/usr/bin/env perl != /usr/bin/perl) [amd64, i386]
  • usr/lib/NAST-iEr/util/show_malign_no_gap.pl (#!/usr/bin/env perl != /usr/bin/perl) [amd64, i386]
  • usr/lib/NAST-iEr/util/show_malign_no_gap_no_identical_cols.pl (#!/usr/bin/env perl != /usr/bin/perl) [amd64, i386]

wigeon

• E wrong-path-for-interpreter
  • usr/lib/WigeoN/WigeoN.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/WigeoN/run_CM_to_WigeoN.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/WigeoN/run_WigeoN.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/WigeoN/util/all_vs_all_WigeoN.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/WigeoN/util/apply_eco_Mask.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/WigeoN/util/compute_quant_bins.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/WigeoN/util/eco_nast_freq.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/WigeoN/util/makeConservationProfile.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/WigeoN/util/smooth.pl (#!/usr/bin/env perl != /usr/bin/perl)

minc-tools (2.3.00+dfsg-3+b1; main)

• W binary-without-manpage
  • usr/bin/minchistory
  • usr/bin/mincmorph
  • usr/bin/mincpik

• W debian-rules-should-not-use-custom-compression-settings
  • dh_builddeb -- -Z xz (line 53)

• E source-is-missing
  • Src/Portal/cgi-bin/MobylePortal/openidform.html line length is 910 characters (>512)

mobyle

• W executable-not-elf-or-script
  • usr/lib/cgi-bin/mobyle/mb_cgi.py
  • usr/lib/cgi-bin/mobyle/treenode.py
  • usr/share/mobyle/core/Local/Config/Execution/__init__.py
• W maintainer-script-should-not-use-recursive-chown-or-chmod
  • postinst:20
  • postinst:21

mobyle-utils

• W binary-without-manpage
  • usr/bin/mobyle-setsid [amd64, i386]

mobyle-utils-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/b2/9e436a4e93014ce40fa41036a4662fc3a7b951.debug
  • usr/lib/debug/.build-id/c7/9b52fe4ee59f4bc7a24485be0747d0c17dd9f3.debug

libmpj-java

• W binary-without-manpage
  • usr/bin/mpjboot
  • usr/bin/mpjclean
  • usr/bin/mpjdaemon
  • usr/bin/mpjhalt
  • usr/bin/mpjinfo
  • usr/bin/mpjrun
  • usr/bin/mpjstatus
  • usr/bin/runmpj

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mrbayes.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mrbayes.git

mrbayes-doc

• W priority-extra-is-replaced-by-priority-optional

mrs-dbgsym (6.0.5+dfsg-7+b2; main)

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/33/9a89ff5ff167abd1f050b468b874d188804bb4.debug
  • usr/lib/debug/.build-id/cc/301df2a4b1e38122602429de6c5cd3205fc386.debug

libmtj-java

• W bad-jar-name
  • usr/share/java/Matrix_Toolkits_for_Java-0.9.14.jar

libmtj-java-doc

• W embedded-javascript-library
  • usr/share/doc/libmtj-java/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libmtj-java/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libmtj-java/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libmtj-java/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libmtj-java/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libmtj-java/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W debian-rules-sets-dpkg-architecture-variable
  • DEB_HOST_ARCH (line 29)
• W dep5-copyright-license-name-not-unique
  • netscape (paragraph at line 168)
• W patch-file-present-but-not-mentioned-in-series
  • do_not_output_everything_to_stderr.patch
  • fix_arm_mips_build
  • fix_checks
  • fix_gcc46_errors
  • fix_gcc47_errors
  • include_typeinfo
  • support_other_cpus
  • wrong_path_to_touch.patch
• E source-is-missing
  • c++/src/html/ncbi_menu.js line length is 357 characters (>256)
  • c++/src/html/ncbi_menu_dnd.js line length is 333 characters (>256)
  • c++/src/html/ncbi_menu_dyn.js line length is 333 characters (>256)
• W useless-autoreconf-build-depends
  • autotools-dev

ncbi-blast+

• W binary-without-manpage
  • usr/bin/blast_formatter [amd64, i386]
  • usr/bin/blastdb_aliastool [amd64, i386]
  • usr/bin/blastdb_convert [amd64, i386]
  • usr/bin/blastdbcheck [amd64, i386]
  • usr/bin/blastdbcmd [amd64, i386]
  • usr/bin/blastdbcp [amd64, i386]
  • usr/bin/blastn [amd64, i386]
  • usr/bin/blastp [amd64, i386]
  • usr/bin/blastx [amd64, i386]
  • usr/bin/convert2blastmask [amd64, i386]
  • usr/bin/deltablast [amd64, i386]
  • usr/bin/dustmasker [amd64, i386]
  • usr/bin/gene_info_reader [amd64, i386]
  • usr/bin/get_species_taxids.sh [amd64, i386]
  • usr/bin/legacy_blast [amd64, i386]
  • usr/bin/makeblastdb [amd64, i386]
  • usr/bin/makembindex [amd64, i386]
  • usr/bin/makeprofiledb [amd64, i386]
  • usr/bin/psiblast [amd64, i386]
  • usr/bin/rpsblast+ [amd64, i386]
  • usr/bin/rpstblastn [amd64, i386]
  • usr/bin/seedtop+ [amd64, i386]
  • usr/bin/segmasker [amd64, i386]
  • usr/bin/seqdb_perf [amd64, i386]
  • usr/bin/tblastn [amd64, i386]
  • usr/bin/tblastx [amd64, i386]
  • usr/bin/update_blastdb [amd64, i386]
  • usr/bin/windowmasker [amd64, i386]
  • usr/bin/windowmasker_2.2.22_adapter [amd64, i386]
• W script-with-language-extension
  • usr/bin/get_species_taxids.sh [amd64, i386]

ncbi-blast+-legacy

• W binary-without-manpage
  • usr/bin/bl2seq
  • usr/bin/blastall
  • usr/bin/blastpgp
  • usr/bin/fastacmd
  • usr/bin/formatdb
  • usr/bin/megablast
  • usr/bin/rpsblast
  • usr/bin/seedtop

libnetlib-java

• W embedded-javascript-library
  • usr/share/doc/libnetlib-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libnetlib-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libnetlib-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libnetlib-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libnetlib-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libnetlib-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libngs-sdk2-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/6c/b15b636394d0cce33f66f5abfda06416805992.debug
  • usr/lib/debug/.build-id/81/a045f41e05c89b09aa4e16c28fb46542ee20af.debug

njplot-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/68/69e4bd4573a76b4ac9d3818aa6c54c9cfa6eaf.debug
  • usr/lib/debug/.build-id/ba/ed02e675f00978cdc8d22e874c28a3bf0f5d49.debug
  • usr/lib/debug/.build-id/d1/d4cf426f4f4f154c4fe6c43632bdccdd37f618.debug
  • usr/lib/debug/.build-id/f2/468857524f23f3263057f7edda25d2dc9749eb.debug

• W build-depends-on-python-sphinx-only

obitools

• W binary-without-manpage
  • usr/bin/ali2consensus
  • usr/bin/extractreads
  • usr/bin/extractreads2

opencfu

• W binary-without-manpage
  • usr/bin/opencfu [amd64, i386]

libopenslide-dev

• W manpage-has-errors-from-man
  • usr/share/man/man3/openslide-formats.3.gz 1902: warning [p 11, 3.8i, div `3tbd2,2', 0.5i]: can't break line [amd64, i386]

orthanc-wsi

• W package-has-unnecessary-activation-of-ldconfig-trigger

paml

• W binary-without-manpage
  • usr/bin/baseml [amd64, i386]
  • usr/bin/basemlg [amd64, i386]
  • usr/bin/chi2 [amd64, i386]
  • usr/bin/codeml [amd64, i386]
  • usr/bin/mcmctree [amd64, i386]
  • usr/bin/paml-evolver [amd64, i386]
  • usr/bin/pamp [amd64, i386]
  • usr/bin/yn00 [amd64, i386]

pdb2pqr-doc

• W privacy-breach-generic
  • usr/share/doc/pdb2pqr/examples/index.html [<link rel="stylesheet" href="http://agave.wustl.edu/css/baker.css" type="text/css">] (http://agave.wustl.edu/css/baker.css)
  • usr/share/doc/pdb2pqr/programmerguide.html [<link rel="stylesheet" href="http://agave.wustl.edu/css/baker.css" type="text/css">] (http://agave.wustl.edu/css/baker.css)
  • usr/share/doc/pdb2pqr/pydoc/index.html [<link rel="stylesheet" href="http://agave.wustl.edu/css/baker.css" type="text/css">] (http://agave.wustl.edu/css/baker.css)
  • usr/share/doc/pdb2pqr/userguide.html [<link rel="stylesheet" href="http://agave.wustl.edu/css/baker.css" type="text/css">] (http://agave.wustl.edu/css/baker.css)

phast

• W manpage-has-errors-from-man
  • usr/share/man/man1/exoniphy.1.gz 160: warning [p 3, 3.5i]: can't break line [amd64, i386]
  • usr/share/man/man1/phyloFit.1.gz 109: warning [p 2, 7.2i]: can't break line [amd64, i386]
  • usr/share/man/man1/prequel.1.gz 40: warning [p 1, 7.0i]: cannot adjust line [amd64, i386]

phipack

• W binary-without-manpage
  • usr/bin/phipack-phi [amd64, i386]
  • usr/bin/phipack-ppma_2_bmp [amd64, i386]
  • usr/bin/phipack-profile [amd64, i386]

phybin

• W hardening-no-pie
  • usr/bin/phybin [amd64, i386]

phylip

• W bad-jar-name
  • usr/share/java/DrawTree-3.697+dfsg.jar
• W binary-without-manpage
  • usr/bin/DrawGram
  • usr/bin/DrawTree

phyml

• W binary-without-manpage
  • usr/bin/phyml-mpi [amd64, i386]

phyml-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/33/b8b6c22ca5b05c1f54a1c21225ee148d79bad6.debug
  • usr/lib/debug/.build-id/5e/09820e76f7a50f4274d69f7e2b55e4cf807e5b.debug
  • usr/lib/debug/.build-id/69/f0d5fa351b36a0bf37ad924a7dfd5e35977315.debug
  • usr/lib/debug/.build-id/6f/12f84cdcc83e75a5eac33dfc49ae6969ec71e1.debug
  • usr/lib/debug/.build-id/82/4a51710ba45e159c2c2ced9c397b25f89fc38c.debug
  • usr/lib/debug/.build-id/db/66296c949a47a77fe4669b740be56cca2f838c.debug

phyx

• W binary-without-manpage
  • usr/bin/pxcltr [amd64, i386]
  • usr/bin/pxcolt [amd64, i386]
  • usr/bin/pxrmk [amd64, i386]
  • usr/bin/pxssort [amd64, i386]
  • usr/bin/pxsstat [amd64, i386]
  • usr/bin/pxtcol [amd64, i386]
  • usr/bin/pxtcomb [amd64, i386]
  • usr/bin/pxtrt [amd64, i386]
• W manpage-has-errors-from-man
  • usr/share/man/man1/pxseqgen.1.gz 59: warning [p 1, 10.2i, div `an-div', 0.0i]: can't break line [amd64, i386]

pirs

• W binary-without-manpage
  • usr/bin/alignment_stator [amd64, i386]
  • usr/bin/baseCalling_Matrix_analyzer [amd64, i386]
  • usr/bin/baseCalling_Matrix_calculator [amd64, i386]
  • usr/bin/baseCalling_Matrix_calculator.0 [amd64, i386]
  • usr/bin/baseCalling_Matrix_merger [amd64, i386]
  • usr/bin/baseCalling_Matrix_merger.old [amd64, i386]
  • usr/bin/gc_coverage_bias [amd64, i386]
  • usr/bin/gc_coverage_bias_plot [amd64, i386]
  • usr/bin/gethist [amd64, i386]
  • usr/bin/ifollowQ [amd64, i386]
  • usr/bin/ifollowQmerge [amd64, i386]
  • usr/bin/ifollowQplot [amd64, i386]
  • usr/bin/ifqQ [amd64, i386]
  • usr/bin/indelstat_sam_bam [amd64, i386]
  • usr/bin/itilestator [amd64, i386]
  • usr/bin/loess [amd64, i386]
  • usr/bin/pifollowQmerge [amd64, i386]
  • usr/bin/pirs [amd64, i386]

pirs-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/0a/cc3a6950bd5778700adc7a6cf090249010312f.debug
  • usr/lib/debug/.build-id/70/e8b80f222fb3909189a786239557b073d217bb.debug

• W spelling-error-in-patch-description
  • debian/patches/add_usage.patch usefull useful

libpixelmed-java-doc

• W embedded-javascript-library
  • usr/share/doc/libpixelmed-java/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libpixelmed-java/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libpixelmed-java/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libpixelmed-java/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libpixelmed-java/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libpixelmed-java/jquery/jquery-ui.min.js please use libjs-jquery-ui

pixelmed-apps

• W manpage-has-errors-from-man
  • usr/share/man/man1/DicomSRValidator.1.gz 11: warning [p 1, 2.0i]: cannot adjust line
  • usr/share/man/man1/StructuredReport.1.gz 11: warning [p 1, 2.0i]: cannot adjust line

pixelmed-www

• W privacy-breach-generic
  • usr/share/pixelmed/ConvertAmicasJPEG2000FilesetToDicom.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/DicomCleaner.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/DicomImageBlackout.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/DicomImageViewer.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/DoseUtility.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/MediaImporter.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/WatchFolderAndSend.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)

libpixelmed-codec-java

• W bad-jar-name
  • usr/share/java/pixelmed_codec-20170512.jar

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/plast.git
  • vcs-git https://anonscm.debian.org/git/debian-med/plast.git

proftmb

• W manpage-has-errors-from-man
  • usr/share/man/man1/proftmb.1.gz 11: warning: macro `IX' not defined [amd64, i386]

proteinortho-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/45/3133658f7523b6e87c7e970e32b3371f7442d7.debug
  • usr/lib/debug/.build-id/60/9a6df57123e49cd8135ac0475b8e515c48dd1d.debug
  • usr/lib/debug/.build-id/cf/568c66e8af119c7f83253333bc8ef822cbaf4f.debug
  • usr/lib/debug/.build-id/fe/4e4ea4efc06f5c2cd5f526394564f64666d1d2.debug

psortb (3.0.6+dfsg-1+b1; main)

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Tools::PSort::Module::AnalysisI.3pm.gz
  • usr/share/man/man3/Bio::Tools::PSort::Module::InputI.3pm.gz
  • usr/share/man/man3/Bio::Tools::PSort::Module::Motif.3pm.gz
  • usr/share/man/man3/Bio::Tools::PSort::Module::Null.3pm.gz
  • usr/share/man/man3/Bio::Tools::PSort::Module::OMPMotif.3pm.gz
  • usr/share/man/man3/Bio::Tools::PSort::Module::OutputI.3pm.gz
  • usr/share/man/man3/Bio::Tools::PSort::Module::Profile.3pm.gz
  • usr/share/man/man3/Bio::Tools::Signal.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::Tools::PSort::Profile.3pm.gz:128

python-aws-xray-sdk

• W new-package-should-not-package-python2-module
  • python-aws-xray-sdk

biom-format-tools

• W binary-without-manpage
  • usr/bin/biom [amd64, i386]

• W python-foo-but-no-python3-foo
  • python-cogent

• W ancient-python-version-field
  • x-python-version 2.6
  • x-python3-version 3.1
• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 0.9.0.1-2

python3-jsondiff

• W binary-without-manpage
  • usr/bin/jsondiff

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 1.0.1-2

python-nose-random

• W new-package-should-not-package-python2-module
  • python-nose-random

python-pyfaidx-examples

• W python-package-depends-on-package-from-other-python-variant
  • Suggests: python3-pyfaidx

• W python-foo-but-no-python3-foo
  • python-pyflow

pyvcf

• W binary-without-manpage
  • usr/bin/vcf_sample_filter

• W ancient-python-version-field
  • x-python-version 2.6
• W python-foo-but-no-python3-foo
  • python-qcli

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

python-ruffus

• W script-not-executable
  • usr/lib/python2.7/dist-packages/ruffus/test/run_all_unit_tests.cmd

python-skbio-doc

• W embedded-javascript-library
  • usr/share/doc/python-skbio-doc/html/_static/bootstrap-2.3.2/js/bootstrap.js please use libjs-twitter-bootstrap
  • usr/share/doc/python-skbio-doc/html/_static/bootstrap-3.3.6/js/bootstrap.js please use libjs-twitter-bootstrap
  • usr/share/doc/python-skbio-doc/html/_static/js/jquery-1.11.0.min.js please use libjs-jquery

• W ancient-python-version-field
  • x-python-version 2.4

• W ancient-python-version-field
  • x-python-version 3.4
• W spelling-error-in-patch-description
  • debian/patches/check_fasta.patch formated formatted
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/qcumber.git
  • vcs-git https://anonscm.debian.org/git/debian-med/qcumber.git

qcumber

• W manpage-has-errors-from-man
  • usr/share/man/man1/qcumber.1.gz 9: warning [p 1, 1.8i]: cannot adjust line

• W ancient-python-version-field
  • x-python-version 2.7
• W build-depends-on-python-sphinx-only
• W incomplete-creative-commons-license
  • cc-by-sa (paragraph at line 14)
• W patch-file-present-but-not-mentioned-in-series
  • call_renamed_seqprep_sortmerna.patch
  • detect_matplotlib_version.patch
  • fix_binary_helper_location.patch

qiime-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/07/eecac90614d1839212745e1018ea7b765cc89a.debug

qiime-doc

• W package-contains-python-doctree-file
  • usr/share/doc/qiime/doctrees/developer/index.doctree.gz
  • usr/share/doc/qiime/doctrees/developer/script_testing.doctree.gz
  • usr/share/doc/qiime/doctrees/documentation/biom_format.doctree
  • usr/share/doc/qiime/doctrees/documentation/file_formats.doctree.gz
  • usr/share/doc/qiime/doctrees/documentation/index.doctree.gz
  • usr/share/doc/qiime/doctrees/documentation/qiime_parameters_files.doctree.gz
  • usr/share/doc/qiime/doctrees/documentation/script_index.doctree
  • usr/share/doc/qiime/doctrees/documentation/table_objects.doctree
  • usr/share/doc/qiime/doctrees/index.doctree.gz
  • usr/share/doc/qiime/doctrees/install/index.doctree
  • usr/share/doc/qiime/doctrees/install/install.doctree.gz
  • usr/share/doc/qiime/doctrees/install/qiime_config.doctree.gz
  • usr/share/doc/qiime/doctrees/install/upgrade.doctree.gz
  • usr/share/doc/qiime/doctrees/install/virtual_box.doctree.gz
  • usr/share/doc/qiime/doctrees/install/vm_ec2.doctree
  • usr/share/doc/qiime/doctrees/scripts/add_alpha_to_mapping_file.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/add_qiime_labels.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/adjust_seq_orientation.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/align_seqs.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/alpha_diversity.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/alpha_rarefaction.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/ampliconnoise.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/assign_taxonomy.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/beta_diversity.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/beta_diversity_through_plots.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/beta_significance.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/blast_wrapper.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/categorized_dist_scatterplot.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/clean_raxml_parsimony_tree.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/cluster_quality.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/collapse_samples.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/collate_alpha.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/compare_alpha_diversity.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/compare_categories.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/compare_distance_matrices.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/compare_taxa_summaries.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/compare_trajectories.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/compute_core_microbiome.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/compute_taxonomy_ratios.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/conditional_uncovered_probability.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/consensus_tree.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/convert_fastaqual_fastq.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/core_diversity_analyses.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/count_seqs.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/cytoscape_usage.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/demultiplex_fasta.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/denoise_wrapper.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/denoiser.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/denoiser_preprocess.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/denoiser_worker.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/detrend.doctree.gz
  • usr/share/doc/qiime/doctrees/scripts/differential_abundance.doctree.gz
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• W privacy-breach-generic
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<link href="https://fonts.googleapis.com/css?family=open+sans:400,700|source+code+pro:300,600|titillium+web:400,600,700" rel="stylesheet">] (https://fonts.googleapis.com/css?family=open+sans:400,700|source+code+pro:300,600|titillium+web:400,600,700)
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<link rel="icon" type="image/png" href="https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/favicon-16x16.png" sizes="16x16" />] (https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/favicon-16x16.png)
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<link rel="icon" type="image/png" href="https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/favicon-32x32.png" sizes="32x32" />] (https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/favicon-32x32.png)
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<link rel="stylesheet" type="text/css" href="https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui.css" >] (https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui.css)
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<script src="https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui-bundle.js">] (https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui-bundle.js)
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<script src="https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui-standalone-preset.js">] (https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui-standalone-preset.js)

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-purrrlyr

• W spelling-error-in-description
  • and and (duplicate word) and [amd64, i386]

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-rcurl

• W maintainer-script-should-not-use-dpkg-maintscript-helper
  • postinst:4
  • postrm:4
  • preinst:4
  • prerm:4

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• E source-is-missing
  • inst/doc/rentrez_tutorial.html line length is 10393 characters (>512)

r-cran-rhandsontable

• W symlink-should-be-relative
  • usr/lib/R/site-library/rhandsontable/htmlwidgets/lib/jquery/jquery.min.js /usr/share/javascript/jquery/jquery.min.js

r-cran-rmarkdown

• W duplicate-font-file
  • usr/lib/R/site-library/rmarkdown/rmd/h/bootstrap/fonts/glyphicons-halflings-regular.ttf also in fonts-glewlwyd
• W embedded-javascript-library
  • usr/lib/R/site-library/rmarkdown/rmd/h/bootstrap/js/bootstrap.js please use libjs-twitter-bootstrap
• W maintainer-script-should-not-use-dpkg-maintscript-helper
  • postinst:4
  • postrm:4
  • preinst:4
  • prerm:4

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 2.1.1-2

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-seqinr (3.4-5-2+b1; main)

• W package-contains-timestamped-gzip
  • usr/lib/R/site-library/seqinr/sequences/ct.fasta.gz
  • usr/lib/R/site-library/seqinr/sequences/ct.gbk.gz
  • usr/lib/R/site-library/seqinr/sequences/smallAA.fasta.gz

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-shiny

• W embedded-javascript-library
  • usr/lib/R/site-library/shiny/www/shared/bootstrap/shim/html5shiv.min.js please use libjs-html5shiv

r-cran-shinythemes

• W privacy-breach-generic
  • usr/lib/R/site-library/shinythemes/shinythemes/css/yeti.min.css [@import url("https://fonts.googleapis.com/css?family=open+sans:300italic,400italic,700italic,400,300,700");] (https://fonts.googleapis.com/css?family=open+sans:300italic,400italic,700italic,400,300,700)

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-treescape

• W privacy-breach-generic
  • usr/lib/R/site-library/treescape/shiny/www/bootstrap.simplex.css [@import url("https://fonts.googleapis.com/css?family=open+sans:400,700");] (https://fonts.googleapis.com/css?family=open+sans:400,700) [amd64, i386]

r-cran-treespace

• W privacy-breach-generic
  • usr/lib/R/site-library/treespace/shiny/www/bootstrap.simplex.css [@import url("https://fonts.googleapis.com/css?family=open+sans:400,700");] (https://fonts.googleapis.com/css?family=open+sans:400,700) [amd64, i386]

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-xml2

• W embedded-javascript-library
  • usr/lib/R/site-library/xml2/extdata/html5shiv.min.js please use libjs-html5shiv [amd64, i386]

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

radiant

• W binary-without-manpage
  • usr/bin/kronatools_updateTaxonomy
  • usr/bin/ktClassifyBLAST
  • usr/bin/ktGetContigMagnitudes
  • usr/bin/ktGetLCA
  • usr/bin/ktGetLibPath
  • usr/bin/ktGetTaxIDFromAcc
  • usr/bin/ktGetTaxInfo
  • usr/bin/ktImportBLAST
  • usr/bin/ktImportDiskUsage
  • usr/bin/ktImportEC
  • usr/bin/ktImportFCP
  • usr/bin/ktImportGalaxy
  • usr/bin/ktImportKrona
  • usr/bin/ktImportMETAREP-EC
  • usr/bin/ktImportMETAREP-blast
  • usr/bin/ktImportMGRAST
  • usr/bin/ktImportPhymmBL
  • usr/bin/ktImportRDP
  • usr/bin/ktImportRDPComparison
  • usr/bin/ktImportTaxonomy
  • usr/bin/ktImportText
  • usr/bin/ktImportXML

rapmap (0.12.0+dfsg-3+b1; main)

• W binary-without-manpage
  • usr/bin/RunRapMap.sh

raxml

• W manpage-has-errors-from-man
  • usr/share/man/man1/raxmlHPC.1.gz 28: warning [p 1, 4.2i]: can't break line

raxml-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/95/be8a007b7fc284b58654178ade2c78f4015f5f.debug
  • usr/lib/debug/.build-id/98/dcb122afd8770c3be2f1a64f3e35e1a163eb34.debug
  • usr/lib/debug/.build-id/a3/638bc4d7463a1e0f7cece812e6fe34299032f5.debug
  • usr/lib/debug/.build-id/bb/fe9852ca028d1dccc363aec970b4fc948da9e2.debug
  • usr/lib/debug/.build-id/de/c1e060cfc959359230d1e68822773ccf89404c.debug
  • usr/lib/debug/.build-id/f6/0d60c573ea3dbf1cb55acbeaa937125e931d9f.debug

ray

• E binary-or-shlib-defines-rpath
  • usr/bin/Ray /usr/lib/i386-linux-gnu/openmpi/lib [amd64, i386]
  • usr/bin/Ray /usr/lib/x86_64-linux-gnu/openmpi/lib [amd64, i386]

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 1.2.0-5

rdp-alignment

• E possible-missing-colon-in-closes
  • Closes #912388

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 2.10.2-4

rdp-classifier

• E possible-missing-colon-in-closes
  • Closes #912385

rdp-classifier-doc

• W embedded-javascript-library
  • usr/share/doc/rdp-classifier-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/rdp-classifier-doc/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• E possible-missing-colon-in-closes
  • Closes #912385

• W debian-source-options-has-custom-compression-settings
  • compression = "xz" (line 1)
• W debian-watch-file-should-mangle-version
  • line 3
• W unnecessary-team-upload

• W obsolete-runtime-tests-restriction
  • needs-recommends paragraph starting at line 7

rsem

• W binary-without-manpage
  • usr/bin/extract-transcript-to-gene-map-from-trinity
  • usr/bin/rsem-bam2readdepth
  • usr/bin/rsem-build-read-index
  • usr/bin/rsem-calculate-credibility-intervals
  • usr/bin/rsem-extract-reference-transcripts
  • usr/bin/rsem-gen-transcript-plots
  • usr/bin/rsem-generate-data-matrix
  • usr/bin/rsem-get-unique
  • usr/bin/rsem-parse-alignments
  • usr/bin/rsem-plot-model
  • usr/bin/rsem-preref
  • usr/bin/rsem-refseq-extract-primary-assembly
  • usr/bin/rsem-run-em
  • usr/bin/rsem-run-gibbs
  • usr/bin/rsem-sam-validator
  • usr/bin/rsem-scan-for-paired-end-reads
  • usr/bin/rsem-synthesis-reference-transcripts
  • usr/bin/rsem-tbam2gbam
  • usr/bin/rsem_perl_utils.pm

runcircos-gui

• W binary-without-manpage
  • usr/bin/runcircos-gui [amd64, i386]

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/sambamba.git
  • vcs-git https://anonscm.debian.org/git/debian-med/sambamba.git

seer (1.1.4-2+b2; main)

• W binary-without-manpage
  • usr/bin/blastn_to_phandango [amd64, i386]

seqmagick

• W manpage-has-errors-from-man
  • usr/share/man/man1/seqmagick.1.gz 8: warning [p 1, 1.7i]: cannot adjust line

sga

• W privacy-breach-generic
  • usr/share/doc/sga/index.html [<img border="0" width="90" src="http://github.com/images/modules/download/tar.png">] (http://github.com/images/modules/download/tar.png)
  • usr/share/doc/sga/index.html [<img border="0" width="90" src="http://github.com/images/modules/download/zip.png">] (http://github.com/images/modules/download/zip.png)

sga-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/40/3d5417f447bb98ba807e6c1ab99948fe8c0581.debug

• E source-contains-unsafe-symlink
  • coding_info/Homo_sapien_36
  • coding_info/Homo_sapien_37
  • db/Human_db_36
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/sift.git
  • vcs-git https://anonscm.debian.org/git/debian-med/sift.git

sift

• W binary-without-manpage
  • usr/bin/SIFT_exome_nssnvs.pl
  • usr/bin/map_coords_to_bin.pl
  • usr/bin/sift_feed_to_chr_coords_batch.pl
  • usr/bin/snv_db_engine.pl
• W csh-considered-harmful
  • usr/lib/sift/bin/SIFT_for_submitting_NCBI_gi_id.csh
  • usr/lib/sift/bin/SIFT_for_submitting_fasta_seq.csh
  • usr/lib/sift/bin/seqs_chosen_via_median_info.csh
  • usr/share/sift/blimps/docs/coduse.csh

• W spelling-error-in-patch-description
  • debian/patches/sitplus-1.0.3-gcc-6.patch standart standard
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/sitplus.git
  • vcs-git https://anonscm.debian.org/git/debian-med/sitplus.git

snap

• W script-with-language-extension
  • usr/bin/hmm-assembler.pl
  • usr/bin/patch-hmm.pl
  • usr/bin/zff2gff3.pl

• W spelling-error-in-patch-description
  • debian/patches/50_all_changes.diff Debians Debian's
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/sofa-framework.git
  • vcs-git https://anonscm.debian.org/git/debian-med/sofa-framework.git

• W patch-file-present-but-not-mentioned-in-series
  • follow_hint_from_README.patch

squizz

• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/squizz.1.gz [amd64, i386]
  • usr/share/man/man5/alifmt.5.gz [amd64, i386]
  • usr/share/man/man5/seqfmt.5.gz [amd64, i386]

sra-toolkit (2.9.3+dfsg-1+b1; main)

• W binary-without-manpage
  • usr/bin/abi-dump
  • usr/bin/abi-load
  • usr/bin/align-info
  • usr/bin/bam-load
  • usr/bin/cache-mgr
  • usr/bin/cg-load
  • usr/bin/copycat
  • usr/bin/fasterq-dump
  • usr/bin/fastq-dump
  • usr/bin/fastq-load
  • usr/bin/helicos-load
  • usr/bin/illumina-dump
  • usr/bin/illumina-load
  • usr/bin/kar
  • usr/bin/kdbmeta
  • usr/bin/latf-load
  • usr/bin/pacbio-load
  • usr/bin/prefetch
  • usr/bin/rcexplain
  • usr/bin/remote-fuser
  • usr/bin/sam-dump
  • usr/bin/sff-dump
  • usr/bin/sff-load
  • usr/bin/sra-pileup
  • usr/bin/sra-sort
  • usr/bin/sra-stat
  • usr/bin/srapath
  • usr/bin/srf-load
  • usr/bin/test-sra
  • usr/bin/vdb-config
  • usr/bin/vdb-copy
  • usr/bin/vdb-decrypt
  • usr/bin/vdb-dump
  • usr/bin/vdb-encrypt
  • usr/bin/vdb-get
  • usr/bin/vdb-lock
  • usr/bin/vdb-passwd
  • usr/bin/vdb-unlock
  • usr/bin/vdb-validate
• W package-contains-timestamped-gzip
  • usr/share/doc/sra-toolkit/test-data.tar.gz

stacks

• W binary-without-manpage
  • usr/bin/stacks

stacks-web

• W binary-without-manpage
  • usr/sbin/stacks-setup-database

staden

• W binary-without-manpage
  • usr/bin/staden [amd64, i386]

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/staden-io-lib.git
  • vcs-git https://anonscm.debian.org/git/debian-med/staden-io-lib.git

libstaden-read-dev

• W binary-without-manpage
  • usr/bin/io_lib-config [amd64, i386]
• W manpage-has-errors-from-man
  • usr/share/man/man3/ExperimentFile.3.gz 28: warning: macro `IX' not defined [amd64, i386]
  • usr/share/man/man3/read_allocate.3.gz 30: warning: macro `IX' not defined [amd64, i386]
  • usr/share/man/man3/read_reading.3.gz 32: warning: macro `IX' not defined [amd64, i386]
  • usr/share/man/man3/read_scf.3.gz 40: warning: macro `IX' not defined [amd64, i386]
  • usr/share/man/man3/scf2read.3.gz 46: warning: macro `IX' not defined [amd64, i386]
  • usr/share/man/man3/write_reading.3.gz 33: warning: macro `IX' not defined [amd64, i386]
  • usr/share/man/man3/write_scf.3.gz 42: warning: macro `IX' not defined [amd64, i386]

staden-io-lib-examples

• W zero-byte-file-in-doc-directory
  • usr/share/doc/staden-io-lib/test/data/xx#blank.sam

staden-io-lib-utils

• W binary-without-manpage
  • usr/bin/convert_trace [amd64, i386]
  • usr/bin/cram_dump [amd64, i386]
  • usr/bin/cram_filter [amd64, i386]
  • usr/bin/cram_index [amd64, i386]
  • usr/bin/cram_size [amd64, i386]
  • usr/bin/extract_fastq [amd64, i386]
  • usr/bin/extract_qual [amd64, i386]
  • usr/bin/extract_seq [amd64, i386]
  • usr/bin/get_comment [amd64, i386]
  • usr/bin/hash_exp [amd64, i386]
  • usr/bin/hash_extract [amd64, i386]
  • usr/bin/hash_list [amd64, i386]
  • usr/bin/hash_sff [amd64, i386]
  • usr/bin/hash_tar [amd64, i386]
  • usr/bin/index_tar [amd64, i386]
  • usr/bin/makeSCF [amd64, i386]
  • usr/bin/scf_dump [amd64, i386]
  • usr/bin/scf_info [amd64, i386]
  • usr/bin/scf_update [amd64, i386]
  • usr/bin/scram_flagstat [amd64, i386]
  • usr/bin/scram_merge [amd64, i386]
  • usr/bin/scram_pileup [amd64, i386]
  • usr/bin/scram_test [amd64, i386]
  • usr/bin/srf_extract_hash [amd64, i386]
  • usr/bin/srf_extract_linear [amd64, i386]
  • usr/bin/trace_dump [amd64, i386]
  • usr/bin/ztr_dump [amd64, i386]

sumaclust-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/4b/9874806f9b8c60470fa43ecd8c03706c769370.debug
  • usr/lib/debug/.build-id/71/7ba2e89eb5f4eddca6174f10f1c25c52bc49e1.debug

sumatra-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/87/052cbc6559ddf5e6575d87ca5719e91d096594.debug
  • usr/lib/debug/.build-id/ac/2567955dd96f3cf57f36447335cf11707d1b32.debug

• W spelling-error-in-patch-description
  • debian/patches/allow_cxx_override.patch allow to allow one to

swarm

• W privacy-breach-generic
  • usr/share/doc/swarm/README.html [<img alt="" src="https://github.com/frederic-mahe/swarm/blob/master/figures/swarm_2.0_fastidious_reduced.png" />] (https://github.com/frederic-mahe/swarm/blob/master/figures/swarm_2.0_fastidious_reduced.png)

libswiss-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/SWISS::ACs.3pm.gz
  • usr/share/man/man3/SWISS::BaseClass.3pm.gz
  • usr/share/man/man3/SWISS::CC.3pm.gz
  • usr/share/man/man3/SWISS::CCalt_prod.3pm.gz
  • usr/share/man/man3/SWISS::CCbpc_properties.3pm.gz
  • usr/share/man/man3/SWISS::CCcofactor.3pm.gz
  • usr/share/man/man3/SWISS::CCcopyright.3pm.gz
  • usr/share/man/man3/SWISS::CCdisease.3pm.gz
  • usr/share/man/man3/SWISS::CCinteraction.3pm.gz
  • usr/share/man/man3/SWISS::CCrna_editing.3pm.gz
  • usr/share/man/man3/SWISS::CCs.3pm.gz
  • usr/share/man/man3/SWISS::CCseq_caution.3pm.gz
  • usr/share/man/man3/SWISS::CCsubcell_location.3pm.gz
  • usr/share/man/man3/SWISS::DE.3pm.gz
  • usr/share/man/man3/SWISS::DEs.3pm.gz
  • usr/share/man/man3/SWISS::DRs.3pm.gz
  • usr/share/man/man3/SWISS::DTs.3pm.gz
  • usr/share/man/man3/SWISS::Entry.3pm.gz
  • usr/share/man/man3/SWISS::FTs.3pm.gz
  • usr/share/man/man3/SWISS::GN.3pm.gz
  • usr/share/man/man3/SWISS::GNs.3pm.gz
  • usr/share/man/man3/SWISS::GeneGroup.3pm.gz
  • usr/share/man/man3/SWISS::IDs.3pm.gz
  • usr/share/man/man3/SWISS::KW.3pm.gz
  • usr/share/man/man3/SWISS::KWs.3pm.gz
  • usr/share/man/man3/SWISS::ListBase.3pm.gz
  • usr/share/man/man3/SWISS::OCs.3pm.gz
  • usr/share/man/man3/SWISS::OG.3pm.gz
  • usr/share/man/man3/SWISS::OGs.3pm.gz
  • usr/share/man/man3/SWISS::OH.3pm.gz
  • usr/share/man/man3/SWISS::OHs.3pm.gz
  • usr/share/man/man3/SWISS::OS.3pm.gz
  • usr/share/man/man3/SWISS::OSs.3pm.gz
  • usr/share/man/man3/SWISS::OX.3pm.gz
  • usr/share/man/man3/SWISS::OXs.3pm.gz
  • usr/share/man/man3/SWISS::PE.3pm.gz
  • usr/share/man/man3/SWISS::RCelement.3pm.gz
  • usr/share/man/man3/SWISS::Ref.3pm.gz
  • usr/share/man/man3/SWISS::Refs.3pm.gz
  • usr/share/man/man3/SWISS::SQs.3pm.gz
  • usr/share/man/man3/SWISS::Stars.3pm.gz
  • usr/share/man/man3/SWISS::Stars::DR.3pm.gz
  • usr/share/man/man3/SWISS::Stars::EV.3pm.gz
  • usr/share/man/man3/SWISS::Stars::aa.3pm.gz
  • usr/share/man/man3/SWISS::Stars::default.3pm.gz
  • usr/share/man/man3/SWISS::TextFunc.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/SWISS::CCalt_prod.3pm.gz:465
  • usr/share/man/man3/SWISS::CCbpc_properties.3pm.gz:176
  • usr/share/man/man3/SWISS::CCcofactor.3pm.gz:178
  • usr/share/man/man3/SWISS::CCdisease.3pm.gz:197
  • usr/share/man/man3/SWISS::CCrna_editing.3pm.gz:177
  • usr/share/man/man3/SWISS::CCsubcell_location.3pm.gz:196
  • usr/share/man/man3/SWISS::DE.3pm.gz:243
  • usr/share/man/man3/SWISS::Entry.3pm.gz:261
  • usr/share/man/man3/SWISS::IDs.3pm.gz:182
  • usr/share/man/man3/SWISS::OGs.3pm.gz:166
  • usr/share/man/man3/SWISS::OS.3pm.gz:162
  • usr/share/man/man3/SWISS::OX.3pm.gz:165
  • usr/share/man/man3/SWISS::OXs.3pm.gz:177
  • usr/share/man/man3/SWISS::RCelement.3pm.gz:167
  • usr/share/man/man3/SWISS::Ref.3pm.gz:220
  • usr/share/man/man3/SWISS::Stars::DR.3pm.gz:161
  • usr/share/man/man3/SWISS::Stars::aa.3pm.gz:161
  • usr/share/man/man3/SWISS::Stars::default.3pm.gz:161
• E wrong-path-for-interpreter
  • usr/share/doc/libswiss-perl/examples/example.pl (#!/usr/bin/env perl != /usr/bin/perl)

theseus

• W manpage-has-errors-from-man
  • usr/share/man/man1/theseus.1.gz 500: warning: macro `{' not defined [amd64, i386]

tifffile

• W binary-without-manpage
  • usr/bin/lsm2bin [amd64, i386]

tophat (2.1.1+dfsg1-2+b1; main)

• W binary-without-manpage
  • usr/bin/bam_merge
  • usr/bin/fix_map_ordering
  • usr/bin/gtf_juncs
  • usr/bin/gtf_to_fasta
  • usr/bin/juncs_db
  • usr/bin/long_spanning_reads
  • usr/bin/map2gtf
  • usr/bin/prep_reads
  • usr/bin/sam_juncs
  • usr/bin/segment_juncs
  • usr/bin/sra_to_solid
  • usr/bin/tophat-fusion-post
  • usr/bin/tophat2
  • usr/bin/tophat_reports