Andreas Tille

At the time of the last Lintian run, the following possible problems were found in packages maintained by Andreas Tille <tille@debian.org>, listed by source package. See also the full report, including info, experimental and overridden tags. Also see their QA overview.

abacas

• W manpage-has-errors-from-man
  • usr/share/man/man1/abacas.1.gz 20: warning [p 1, 3.0i, div 'an-div', 0.0i]: cannot adjust line

• W timewarp-standards-version
  • (2019-03-05 < 2019-07-07)

adapterremoval

• W privacy-breach-generic
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg) [amd64, i386]
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg) [amd64, i386]

• W rc-version-greater-than-expected-version
  • 0.2.2-beta2+git20190406.ef77f01 > 0.2.2 (consider using 0.2.2~beta)

alien-hunter

• W package-installs-java-bytecode
  • usr/share/alien_hunter/ChangepointLeft$1.class
  • usr/share/alien_hunter/ChangepointLeft.class
  • usr/share/alien_hunter/ChangepointRight$1.class
  • usr/share/alien_hunter/ChangepointRight.class

arb-common

• W duplicate-changelog-files
  • usr/share/doc/arb-common/arb_CHANGES.txt.gz usr/share/doc/arb-common/changelog.gz usr/share/doc/arb/arb_CHANGES.txt.gz

• W python-foo-but-no-python3-foo
  • python-ball

ballview

• W desktop-mime-but-no-exec-code
  • usr/share/applications/ballview.desktop [amd64, i386]

libball1.5

• W dev-pkg-without-shlib-symlink
  • usr/lib/libBALL.so.1.5 usr/lib/libBALL.so [amd64, i386]

libball1.5-dev

• W breaks-without-version
  • libball1.3-dev [amd64, i386]

libballview1.5

• W dev-pkg-without-shlib-symlink
  • usr/lib/libVIEW.so.1.5 usr/lib/libVIEW.so [amd64, i386]

libballview1.5-dev

• W breaks-without-version
  • libballview1.3-dev [amd64, i386]

bedtools-test

• W executable-not-elf-or-script
  • usr/share/bedtools/data/knownGene.hg18.chr21.bed
  • usr/share/bedtools/test/sort/b.bed
• W script-not-executable
  • usr/share/bedtools/test/bamtobed/test-bamtobed.sh
  • usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
  • usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
  • usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/closest/test-closest.sh
  • usr/share/bedtools/test/cluster/test-cluster.sh
  • usr/share/bedtools/test/complement/test-complement.sh
  • usr/share/bedtools/test/expand/test-expand.sh
  • usr/share/bedtools/test/fisher/cmp.sh
  • usr/share/bedtools/test/fisher/get.sh
  • usr/share/bedtools/test/fisher/shuf.sh
  • usr/share/bedtools/test/fisher/test-fisher.sh
  • usr/share/bedtools/test/flank/test-flank.sh
  • usr/share/bedtools/test/general/test-general.sh
  • usr/share/bedtools/test/getfasta/test-getfasta.sh
  • usr/share/bedtools/test/groupby/test-groupby.sh
  • usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
  • usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/intersect/test-intersect.sh
  • usr/share/bedtools/test/jaccard/test-jaccard.sh
  • usr/share/bedtools/test/makewindows/test-makewindows.sh
  • usr/share/bedtools/test/map/test-map.sh
  • usr/share/bedtools/test/merge/test-merge.sh
  • usr/share/bedtools/test/multicov/test-multicov.sh
  • usr/share/bedtools/test/negativecontrol/test-negativecontrol.sh
  • usr/share/bedtools/test/reldist/test-reldist.sh
  • usr/share/bedtools/test/sample/test-sample.sh
  • usr/share/bedtools/test/shift/test-shift.sh
  • usr/share/bedtools/test/shuffle/test-shuffle.sh
  • usr/share/bedtools/test/slop/test-slop.sh
  • usr/share/bedtools/test/sort/test-sort.sh
  • usr/share/bedtools/test/spacing/test-spacing.sh
  • usr/share/bedtools/test/split/test-split.sh
  • usr/share/bedtools/test/subtract/test-subtract.sh

biobambam2

• W binary-without-manpage
  • usr/bin/bamalignfrac
  • usr/bin/bamauxmerge
  • usr/bin/bamexplode
  • usr/bin/bamfilterlength
  • usr/bin/bamfilternames
  • usr/bin/bamfilterrefid
  • usr/bin/bamheap2
  • usr/bin/bamintervalcommenthist
  • usr/bin/bamlastfilter
  • usr/bin/bammapdist
  • usr/bin/bamnumericalindex
  • usr/bin/bamranksort
  • usr/bin/bamrefextract
  • usr/bin/bamrefinterval
  • usr/bin/bamscrapcount
  • usr/bin/bamtagconversion
  • usr/bin/fastqtobampar
  • usr/bin/filtersam
  • usr/bin/kmerprob
• W manpage-has-errors-from-man
  • usr/share/man/man1/bammaskflags.1.gz 37: expected ';' after scale-indicator (got 'a')

• W debhelper-but-no-misc-depends
  • libbiococoa-dev
  • libbiococoa2

libbiojava-java-doc

• W embedded-javascript-library
  • usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libbio-perl-run-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::FastTree.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Raxml.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Primate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Prints.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Profile.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Signalp.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::TribeMCL.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Vista.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::DB::SoapEUtilities::Result.3pm.gz:419
  • usr/share/man/man3/Bio::Tools::Run::ERPIN.3pm.gz:321

bitseq

• W binary-without-manpage
  • usr/bin/biocUpdate [amd64, i386]
  • usr/bin/checkTR [amd64, i386]

blends-common

• E missing-depends-on-sensible-utils
  • usr/share/menu/blend-menu

brig

• W bad-jar-name
  • usr/share/java/BRIG-0.95.jar [amd64, i386]
• W binary-without-manpage
  • usr/bin/brig [amd64, i386]
• W spelling-error-in-readme-debian
  • inconvinience inconvenience [amd64, i386]

libcamitk-dev

• W breaks-without-version
  • libvtk6-dev [amd64, i386]
  • libvtk6-java [amd64, i386]
  • libvtk6-jni [amd64, i386]
  • libvtk6-qt-dev [amd64, i386]

• W debian-watch-file-should-mangle-version
  • line 3

cct

• W executable-not-elf-or-script
  • usr/share/cct/lib/assign_cogs/assign_cogs.pl
  • usr/share/cct/lib/cgview_xml_builder/cgview_xml_builder.pl
  • usr/share/cct/lib/convert_vcf_to_features/test.sh

cd-hit

• W binary-without-manpage
  • usr/bin/cdhit [amd64, i386]
  • usr/bin/cdhit-2d [amd64, i386]
  • usr/bin/cdhit-454 [amd64, i386]
  • usr/bin/cdhit-est [amd64, i386]
  • usr/bin/cdhit-est-2d [amd64, i386]
  • usr/bin/clstr2tree [amd64, i386]
  • usr/bin/clstr_merge [amd64, i386]
  • usr/bin/clstr_merge_noorder [amd64, i386]
  • usr/bin/clstr_reduce [amd64, i386]
  • usr/bin/clstr_renumber [amd64, i386]
  • usr/bin/clstr_rev [amd64, i386]
  • usr/bin/clstr_sort_by [amd64, i386]
  • usr/bin/clstr_sort_prot_by [amd64, i386]
  • usr/bin/make_multi_seq [amd64, i386]

centrifuge

• W zero-byte-file-in-doc-directory
  • usr/share/doc/centrifuge/html/manual.inc.html

• W build-depends-on-python-sphinx-only
• W python-foo-but-no-python3-foo
  • python-cfflib

cimg-doc

• W privacy-breach-generic
  • usr/share/doc/cimg-dev/html/img/video_blobs.html [<embed src="http://www.youtube.com/v/wocdcffz7z4?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/wocdcffz7z4?version=3)
  • usr/share/doc/cimg-dev/html/img/video_bubble.html [<embed src="http://www.youtube.com/v/oxk6wc4vsbe?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/oxk6wc4vsbe?version=3)
  • usr/share/doc/cimg-dev/html/img/video_bump.html [<embed src="http://www.youtube.com/v/ggjtelq5ahi?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ggjtelq5ahi?version=3)
  • usr/share/doc/cimg-dev/html/img/video_cimgdemo.html [<embed src="http://www.youtube.com/v/mtvhje_ff18?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/mtvhje_ff18?version=3)
  • usr/share/doc/cimg-dev/html/img/video_curveeditor.html [<embed src="http://www.youtube.com/v/vnctzhnxjvy?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/vnctzhnxjvy?version=3)
  • usr/share/doc/cimg-dev/html/img/video_doubletorus.html [<embed src="http://www.youtube.com/v/y1bhhxwsoa4?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/y1bhhxwsoa4?version=3)
  • usr/share/doc/cimg-dev/html/img/video_dtmri.html [<embed src="http://www.youtube.com/v/ip2ituxhcls?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ip2ituxhcls?version=3)
  • usr/share/doc/cimg-dev/html/img/video_fourier.html [<embed src="http://www.youtube.com/v/op0xovmedpe?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/op0xovmedpe?version=3)
  • usr/share/doc/cimg-dev/html/img/video_imagesurface.html [<embed src="http://www.youtube.com/v/olbxh-gkv3u?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/olbxh-gkv3u?version=3)
  • usr/share/doc/cimg-dev/html/img/video_jawbreaker.html [<embed src="http://www.youtube.com/v/3z4jdb-wafs?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/3z4jdb-wafs?version=3)
  • usr/share/doc/cimg-dev/html/img/video_landscape.html [<embed src="http://www.youtube.com/v/i8_wcewwpoo?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/i8_wcewwpoo?version=3)
  • usr/share/doc/cimg-dev/html/img/video_mandelbrot.html [<embed src="http://www.youtube.com/v/ir80v5r9ajm?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ir80v5r9ajm?version=3)
  • usr/share/doc/cimg-dev/html/img/video_menu.html [<embed src="http://www.youtube.com/v/t0tjzmytisg?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/t0tjzmytisg?version=3)
  • usr/share/doc/cimg-dev/html/img/video_metaballs.html [<embed src="http://www.youtube.com/v/-s_r76oxzyy?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/-s_r76oxzyy?version=3)
  • usr/share/doc/cimg-dev/html/img/video_minipaint.html [<embed src="http://www.youtube.com/v/4hbisksvzki?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/4hbisksvzki?version=3)
  • usr/share/doc/cimg-dev/html/img/video_plasma.html [<embed src="http://www.youtube.com/v/na8hcaykbfo?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/na8hcaykbfo?version=3)
  • usr/share/doc/cimg-dev/html/img/video_reflection.html [<embed src="http://www.youtube.com/v/5wqgkejdrcw?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/5wqgkejdrcw?version=3)
  • usr/share/doc/cimg-dev/html/img/video_shadebobs.html [<embed src="http://www.youtube.com/v/q91cyn6x8ly?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/q91cyn6x8ly?version=3)
  • usr/share/doc/cimg-dev/html/img/video_tetris.html [<embed src="http://www.youtube.com/v/iksy2kceh38?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/iksy2kceh38?version=3)
  • usr/share/doc/cimg-dev/html/img/video_waves.html [<embed src="http://www.youtube.com/v/kne-rxjlddm?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/kne-rxjlddm?version=3)

circos

• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/circos.1.gz

clonalorigin

• W binary-without-manpage
  • usr/bin/blocksplit [amd64, i386]
  • usr/bin/computeMedians [amd64, i386]
  • usr/bin/makeMauveWargFile [amd64, i386]

crac

• W binary-without-manpage
  • usr/bin/crac-client
  • usr/bin/crac-index
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/crac.1.gz

python-cram

• W binary-without-manpage
  • usr/bin/cram

python3-cram

• W binary-without-manpage
  • usr/bin/cram3

ctsim-doc

• W privacy-breach-generic
  • usr/share/doc/ctsim/examples/simulate.html [<link rel="stylesheet" href="http://www.ctsim.org/main.css" type="text/css">] (http://www.ctsim.org/main.css)

debichem-analytical-biochemistry

• E description-is-pkg-name
  • DebiChem Analytical BioChemistry

debichem-cheminformatics

• E description-is-pkg-name
  • DebiChem Cheminformatics

debichem-crystallography

• E description-is-pkg-name
  • DebiChem crystallography

debichem-molecular-dynamics

• E description-is-pkg-name
  • DebiChem Molecular Dynamics

dh-r

• W binary-without-manpage
  • usr/bin/dh_vignette
  • usr/bin/prepare_missing_cran_package
• W script-not-executable
  • usr/share/dh-r/r-cran.mk

dialign-tx

• W spelling-error-in-readme-debian
  • acces access [amd64, i386]

dicomscope

• W bad-jar-name
  • usr/share/java/DICOMscope-3.6.0.jar

dnaclust

• W binary-without-manpage
  • usr/bin/dnaclust-abun [amd64, i386]
  • usr/bin/dnaclust-ref [amd64, i386]
  • usr/bin/find-large-clusters [amd64, i386]
  • usr/bin/generate_test_clusters [amd64, i386]
  • usr/bin/star-align [amd64, i386]
• W executable-not-elf-or-script
  • usr/share/doc/dnaclust/examples/ebola.fasta [amd64, i386]

ecopcr

• W binary-without-manpage
  • usr/bin/ecoPCRFilter [amd64, i386]
  • usr/bin/ecoSort [amd64, i386]

eigensoft

• W binary-without-manpage
  • usr/bin/baseprog [amd64, i386]
  • usr/bin/convertf [amd64, i386]
  • usr/bin/eigenstrat [amd64, i386]
  • usr/bin/eigenstratQTL [amd64, i386]
  • usr/bin/evec2pca [amd64, i386]
  • usr/bin/evec2pca-ped [amd64, i386]
  • usr/bin/gc-eigensoft [amd64, i386]
  • usr/bin/mergeit [amd64, i386]
  • usr/bin/pca [amd64, i386]
  • usr/bin/pcatoy [amd64, i386]
  • usr/bin/smartpca [amd64, i386]
  • usr/bin/smartrel [amd64, i386]
  • usr/bin/smshrink [amd64, i386]
  • usr/bin/twstats [amd64, i386]

• W debian-rules-should-not-use-custom-compression-settings
  • dh_builddeb -- -Z xz (line 129)

emboss (6.6.0+dfsg-7+b1; main)

• W binary-without-manpage
  • usr/bin/acdgalaxy [amd64, i386]
  • usr/bin/assemblyget [amd64, i386]
  • usr/bin/embossupdate [amd64, i386]
  • usr/bin/featmerge [amd64, i386]
  • usr/bin/infoassembly [amd64, i386]
  • usr/bin/jembossctl [amd64, i386]
  • usr/bin/refseqget [amd64, i386]
  • usr/bin/variationget [amd64, i386]
  • usr/bin/xmlget [amd64, i386]
  • usr/bin/xmltext [amd64, i386]

emboss-doc

• E doc-base-file-references-missing-file
  • domainatrix:13 /usr/share/doc/emboss-doc/doc/manuals/domainatrix.txt
  • emboss-apps:8 /usr/share/doc/emboss-doc/doc/programs/html/index.html
  • emboss-apps:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • emboss-groups:8 /usr/share/doc/emboss-doc/doc/programs/html/groups.html
  • emboss-groups:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • emboss-qg:11 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.pdf
  • emboss-qg:8 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.ps

emboss-lib (6.6.0+dfsg-7+b1; main)

• W package-has-unnecessary-activation-of-ldconfig-trigger

emboss-test

• W csh-considered-harmful
  • usr/share/EMBOSS/test/memtest/purify.csh
  • usr/share/EMBOSS/test/memtest/valgrind.csh
  • usr/share/EMBOSS/test/qa/qatest.csh
• W privacy-breach-generic
  • usr/share/EMBOSS/test/data/memenew/ex1.html [<img src="http://meme.nbcr.net/meme/images/meme.png" alt="meme">] (http://meme.nbcr.net/meme/images/meme.png)

jemboss

• W binary-without-manpage
  • usr/bin/jemboss
  • usr/bin/runJemboss.sh
• W classpath-contains-relative-path
  • usr/share/EMBOSS/jemboss/lib/jemboss.jar: lib/jakarta-regexp-1.2.jar

entangle

• E doc-base-file-references-wrong-path
  • entangle:10 /usr/share/gtk-doc/html/entangle/*.html
  • entangle:9 /usr/share/gtk-doc/html/entangle/index.html
• W non-dev-pkg-with-shlib-symlink
  • usr/lib/i386-linux-gnu/libentangle_backend.so.0.0.0 usr/lib/i386-linux-gnu/libentangle_backend.so
  • usr/lib/i386-linux-gnu/libentangle_frontend.so.0.0.0 usr/lib/i386-linux-gnu/libentangle_frontend.so
  • usr/lib/x86_64-linux-gnu/libentangle_backend.so.0.0.0 usr/lib/x86_64-linux-gnu/libentangle_backend.so
  • usr/lib/x86_64-linux-gnu/libentangle_frontend.so.0.0.0 usr/lib/x86_64-linux-gnu/libentangle_frontend.so
• W package-name-doesnt-match-sonames
  • libentangle-backend0 libentangle-frontend0

gir1.2-entangle-0.1

• W gir-missing-typelib-dependency
  • usr/share/gir-1.0/Entangle-0.1.gir gir1.2-entangle-0.1
• W gir-section-not-libdevel
  • usr/share/gir-1.0/Entangle-0.1.gir introspection

fastlink

• W privacy-breach-generic
  • usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/left.gif" width="130" height="45" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/left.gif) [amd64, i386]
  • usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif" width="125" height="1" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif) [amd64, i386]
  • usr/share/doc/fastlink/fastlink.html [<link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css">] (http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css) [amd64, i386]

libfest-reflect-java-doc

• W embedded-javascript-library
  • usr/share/doc/libfest-reflect-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libffindex0

• W package-name-doesnt-match-sonames
  • libffindex2.0.2

• W debian-rules-uses-deprecated-makefile
  • line 8 /usr/share/cdbs/1/class/perlmodule.mk

findimagedupes (2.18-7+b1; main)

• W manpage-has-errors-from-pod2man
  • usr/share/man/man1/findimagedupes.1p.gz:387

fis-gtm-6.3-007 (6.3-007-1+b1; main)

• W non-standard-dir-perm
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-007_i686/ 0775 != 0755
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  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-007_x86_64/ 0775 != 0755
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-007_x86_64/plugin/gtmcrypt/ 0775 != 0755
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-007_x86_64/utf8/gtmsecshrdir/ 0775 != 0755
• W non-standard-file-perm
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-007_i686/DECOMMENT.m 0664 != 0644
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freebayes

• W binary-without-manpage
  • usr/bin/bamleftalign
  • usr/bin/freebayes

• W ancient-standards-version
  • 4.0.0 (released 2017-05-28) (current is 4.4.1)
• W debian-rules-should-not-use-custom-compression-settings
  • dh_builddeb -- -Z xz (line 113)
• W debian-rules-uses-unnecessary-dh-argument
  • dh ... --parallel (line 55)
• W dep5-copyright-license-name-not-unique
  • bsd-revised (paragraph at line 174)
  • pd (paragraph at line 167)
• W incomplete-creative-commons-license
  • cc-by-sa-3.0 (paragraph at line 149)
• W obsolete-url-in-packaging
  • debian/copyright http://code.google.com/p/freemedforms/downloads/list
• W orig-tarball-missing-upstream-signature
  • freemedforms-project_0.9.4.orig.tar.gz
• W patch-file-present-but-not-mentioned-in-series
  • 076_freeaccount-quit-segfaulting
  • 076_hurd_glibc_install
  • 076_rpath_hurd_glibc
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/freemedforms-project.git
  • vcs-git https://anonscm.debian.org/git/debian-med/freemedforms-project.git

freemedforms-libs (0.9.4-2+b2; main)

• W package-has-unnecessary-activation-of-ldconfig-trigger

• W debian-rules-sets-dpkg-architecture-variable
  • DEB_BUILD_ARCH (line 7)

genometester

• W binary-without-manpage
  • usr/bin/gdistribution [amd64, i386]

• W missing-license-paragraph-in-dep5-copyright
  • gpl-2 (paragraph at line 30)
• W patch-file-present-but-not-mentioned-in-series
  • build-own-manual-PDF.patch
  • set-default-HHLIB-dir.patch

hhsuite

• W binary-without-manpage
  • usr/bin/hhalign_omp
  • usr/bin/hhblits_ca3m
  • usr/bin/hhsearch_omp

libhmmer2-dev

• E pkg-config-multi-arch-wrong-dir
  • usr/lib/i386-linux-gnu/pkgconfig/libhmmer2.pc full text contains architecture specific dir x86_64-linux-gnu

libhtsjdk-java-doc

• E doc-base-file-references-wrong-path
  • libhtsjdk-java-doc:8 //usr/share/doc/libhtsjdk-java/api/
  • libhtsjdk-java-doc:9 //usr/share/doc/libhtsjdk-java/api//*.html
• W embedded-javascript-library
  • usr/share/doc/libhtsjdk-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libicu4j-java-doc

• W embedded-javascript-library
  • usr/share/doc/libicu4j-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libicu4j-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

invesalius

• W executable-not-elf-or-script
  • usr/share/invesalius/invesalius/data/viewer_slice.py
  • usr/share/invesalius/invesalius/data/viewer_volume.py
  • usr/share/invesalius/invesalius/gui/widgets/gradient.py

• W patch-file-present-but-not-mentioned-in-series
  • 10_remove_py2_prints.patch
  • 10_remove_python2_shebang.patch
  • 10_sample_path.patch

ipig

• W bad-jar-name
  • usr/share/java/iPiG-0.0.r5.jar [amd64, i386]

iva (1.0.9+ds-6+b1; main)

• W package-contains-timestamped-gzip
  • usr/lib/python3/dist-packages/iva/test_run_data/reads_1.fq.gz
  • usr/lib/python3/dist-packages/iva/test_run_data/reads_2.fq.gz
• W package-installs-java-bytecode
  • usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class
  • usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class
  • usr/lib/python3/dist-packages/iva/gage/SizeFasta.class
  • usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class
  • usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class
  • usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class
  • usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class
  • usr/lib/python3/dist-packages/iva/gage/Utils.class
  • usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class
  • usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class

libjam-java-doc

• E doc-base-file-references-wrong-path
  • libjam-java-doc:8 //usr/share/doc/libjam-java/api
  • libjam-java-doc:9 //usr/share/doc/libjam-java/api/*.html
• W embedded-javascript-library
  • usr/share/doc/libjam-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libjam-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libjam-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libjam-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libjam-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libjam-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libjebl2-java-doc

• E doc-base-file-references-wrong-path
  • libjebl2-java-doc:8 //usr/share/doc/libjebl2-java/api
  • libjebl2-java-doc:9 //usr/share/doc/libjebl2-java/api/*.html
• W embedded-javascript-library
  • usr/share/doc/libjebl2-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libjebl2-java/api/jquery/jquery-1.10.2.js please use libjs-jquery
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

jmodeltest

• W binary-without-manpage
  • usr/bin/runjmodeltest-cluster

• W python-foo-but-no-python3-foo
  • python-kineticstools

• W unnecessary-team-upload

lamarc

• W binary-without-manpage
  • usr/bin/lam_conv [amd64, i386]
  • usr/bin/lamarc [amd64, i386]

libace-perl (1.92-8+b2; main)

• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Ace.3pm.gz:1195 [amd64, i386]
  • usr/share/man/man3/Ace::Graphics::GlyphFactory.3pm.gz:191 [amd64, i386]
  • usr/share/man/man3/Ace::Sequence::GappedAlignment.3pm.gz:156 [amd64, i386]
  • usr/share/man/man3/Ace::Sequence::Gene.3pm.gz:169 [amd64, i386]
  • usr/share/man/man3/Ace::Sequence::Transcript.3pm.gz:169 [amd64, i386]

libbio-mage-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::MAGE::Association.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::MAGE::Array::Array.3pm.gz:1069
  • usr/share/man/man3/Bio::MAGE::Array::ArrayGroup.3pm.gz:1266
  • usr/share/man/man3/Bio::MAGE::Array::ArrayManufacture.3pm.gz:1078
  • usr/share/man/man3/Bio::MAGE::Array::ArrayManufactureDeviation.3pm.gz:551
  • usr/share/man/man3/Bio::MAGE::Array::FeatureDefect.3pm.gz:572
  • usr/share/man/man3/Bio::MAGE::Array::Fiducial.3pm.gz:739
  • usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMS.3pm.gz:788
  • usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMSBiomaterial.3pm.gz:919
  • usr/share/man/man3/Bio::MAGE::Array::PositionDelta.3pm.gz:568
  • usr/share/man/man3/Bio::MAGE::Array::ZoneDefect.3pm.gz:572
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ArrayDesign.3pm.gz:1082
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::CompositeGroup.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::DesignElementGroup.3pm.gz:799
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::FeatureGroup.3pm.gz:1131
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::PhysicalArrayDesign.3pm.gz:1185
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ReporterGroup.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::Zone.3pm.gz:1005
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneGroup.3pm.gz:765
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneLayout.3pm.gz:658
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Audit.3pm.gz:737
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Contact.3pm.gz:1003
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Organization.3pm.gz:1053
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Person.3pm.gz:1182
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Security.3pm.gz:808
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::SecurityGroup.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BQS::BibliographicReference.3pm.gz:1148
  • usr/share/man/man3/Bio::MAGE::BioAssay::BioAssay.3pm.gz:812
  • usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayCreation.3pm.gz:906
  • usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayTreatment.3pm.gz:846
  • usr/share/man/man3/Bio::MAGE::BioAssay::Channel.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssay::DerivedBioAssay.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioAssay::FeatureExtraction.3pm.gz:842
  • usr/share/man/man3/Bio::MAGE::BioAssay::Hybridization.3pm.gz:902
  • usr/share/man/man3/Bio::MAGE::BioAssay::Image.3pm.gz:840
  • usr/share/man/man3/Bio::MAGE::BioAssay::ImageAcquisition.3pm.gz:902
  • usr/share/man/man3/Bio::MAGE::BioAssay::MeasuredBioAssay.3pm.gz:915
  • usr/share/man/man3/Bio::MAGE::BioAssay::PhysicalBioAssay.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayData.3pm.gz:935
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDatum.3pm.gz:617
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMapping.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataCube.3pm.gz:523
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataTuples.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataValues.3pm.gz:440
  • usr/share/man/man3/Bio::MAGE::BioAssayData::CompositeSequenceDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DerivedBioAssayData.3pm.gz:983
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementDimension.3pm.gz:694
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMap.3pm.gz:753
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMapping.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::FeatureDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::MeasuredBioAssayData.3pm.gz:936
  • usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMapping.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::ReporterDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::Transformation.3pm.gz:996
  • usr/share/man/man3/Bio::MAGE::BioEvent::BioEvent.3pm.gz:759
  • usr/share/man/man3/Bio::MAGE::BioEvent::Map.3pm.gz:753
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterial.3pm.gz:917
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterialMeasurement.3pm.gz:525
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioSample.3pm.gz:962
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioSource.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioMaterial::Compound.3pm.gz:900
  • usr/share/man/man3/Bio::MAGE::BioMaterial::CompoundMeasurement.3pm.gz:525
  • usr/share/man/man3/Bio::MAGE::BioMaterial::LabeledExtract.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioMaterial::Treatment.3pm.gz:1007
  • usr/share/man/man3/Bio::MAGE::BioSequence::BioSequence.3pm.gz:1191
  • usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeature.3pm.gz:705
  • usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeatureLocation.3pm.gz:583
  • usr/share/man/man3/Bio::MAGE::BioSequence::SequencePosition.3pm.gz:527
  • usr/share/man/man3/Bio::MAGE::Describable.3pm.gz:622
  • usr/share/man/man3/Bio::MAGE::Description::Database.3pm.gz:838
  • usr/share/man/man3/Bio::MAGE::Description::DatabaseEntry.3pm.gz:660
  • usr/share/man/man3/Bio::MAGE::Description::Description.3pm.gz:915
  • usr/share/man/man3/Bio::MAGE::Description::ExternalReference.3pm.gz:611
  • usr/share/man/man3/Bio::MAGE::Description::OntologyEntry.3pm.gz:675
  • usr/share/man/man3/Bio::MAGE::DesignElement::CompositeCompositeMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::DesignElement::CompositePosition.3pm.gz:628
  • usr/share/man/man3/Bio::MAGE::DesignElement::CompositeSequence.3pm.gz:915
  • usr/share/man/man3/Bio::MAGE::DesignElement::DesignElement.3pm.gz:740
  • usr/share/man/man3/Bio::MAGE::DesignElement::Feature.3pm.gz:1043
  • usr/share/man/man3/Bio::MAGE::DesignElement::FeatureInformation.3pm.gz:538
  • usr/share/man/man3/Bio::MAGE::DesignElement::FeatureLocation.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::DesignElement::FeatureReporterMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::DesignElement::MismatchInformation.3pm.gz:566
  • usr/share/man/man3/Bio::MAGE::DesignElement::Position.3pm.gz:568
  • usr/share/man/man3/Bio::MAGE::DesignElement::Reporter.3pm.gz:964
  • usr/share/man/man3/Bio::MAGE::DesignElement::ReporterCompositeMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::DesignElement::ReporterPosition.3pm.gz:628
  • usr/share/man/man3/Bio::MAGE::Experiment::Experiment.3pm.gz:988
  • usr/share/man/man3/Bio::MAGE::Experiment::ExperimentDesign.3pm.gz:919
  • usr/share/man/man3/Bio::MAGE::Experiment::ExperimentalFactor.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::Experiment::FactorValue.3pm.gz:829
  • usr/share/man/man3/Bio::MAGE::Extendable.3pm.gz:486
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster.3pm.gz:795
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::Node.3pm.gz:778
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeContents.3pm.gz:739
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeValue.3pm.gz:662
  • usr/share/man/man3/Bio::MAGE::Identifiable.3pm.gz:746
  • usr/share/man/man3/Bio::MAGE::Measurement::ConcentrationUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::DistanceUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::MassUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::Measurement.3pm.gz:662
  • usr/share/man/man3/Bio::MAGE::Measurement::QuantityUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::TemperatureUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::TimeUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::Unit.3pm.gz:494
  • usr/share/man/man3/Bio::MAGE::Measurement::VolumeUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::NameValueType.3pm.gz:563
  • usr/share/man/man3/Bio::MAGE::Protocol::Hardware.3pm.gz:1050
  • usr/share/man/man3/Bio::MAGE::Protocol::HardwareApplication.3pm.gz:750
  • usr/share/man/man3/Bio::MAGE::Protocol::Parameter.3pm.gz:782
  • usr/share/man/man3/Bio::MAGE::Protocol::ParameterValue.3pm.gz:523
  • usr/share/man/man3/Bio::MAGE::Protocol::Parameterizable.3pm.gz:797
  • usr/share/man/man3/Bio::MAGE::Protocol::ParameterizableApplication.3pm.gz:665
  • usr/share/man/man3/Bio::MAGE::Protocol::Protocol.3pm.gz:1050
  • usr/share/man/man3/Bio::MAGE::Protocol::ProtocolApplication.3pm.gz:930
  • usr/share/man/man3/Bio::MAGE::Protocol::Software.3pm.gz:1007
  • usr/share/man/man3/Bio::MAGE::Protocol::SoftwareApplication.3pm.gz:795
  • usr/share/man/man3/Bio::MAGE::QuantitationType::ConfidenceIndicator.3pm.gz:1040
  • usr/share/man/man3/Bio::MAGE::QuantitationType::DerivedSignal.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::Error.3pm.gz:1041
  • usr/share/man/man3/Bio::MAGE::QuantitationType::ExpectedValue.3pm.gz:1041
  • usr/share/man/man3/Bio::MAGE::QuantitationType::Failed.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::MeasuredSignal.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::PValue.3pm.gz:1041
  • usr/share/man/man3/Bio::MAGE::QuantitationType::PresentAbsent.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::QuantitationType.3pm.gz:992
  • usr/share/man/man3/Bio::MAGE::QuantitationType::Ratio.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::SpecializedQuantitationType.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::StandardQuantitationType.3pm.gz:1000

libbio-mage-utils-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyClassEntry.3pm.gz
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyEntry.3pm.gz
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyHelper.3pm.gz
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyPropertyEntry.3pm.gz
  • usr/share/man/man3/Bio::MAGE::XML::Handler.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::MAGE::SQLUtils.3pm.gz:97
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyClassEntry.3pm.gz:140
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyEntry.3pm.gz:123
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyPropertyEntry.3pm.gz:114
  • usr/share/man/man3/Bio::MAGE::XML::Handler.3pm.gz:99
  • usr/share/man/man3/Bio::MAGE::XML::Reader.3pm.gz:210
  • usr/share/man/man3/Bio::MAGE::XML::Writer.3pm.gz:306

libbpp-phyl-omics3

• E symbols-file-contains-current-version-with-debian-revision
  • on symbol _ZN3bpp14DistanceMatrixclEjj@Base and 98 others

libcolt-free-java-doc

• E doc-base-file-references-wrong-path
  • libcolt-free-java-doc:8 //usr/share/doc/libcolt-free-java
  • libcolt-free-java-doc:9 //usr/share/doc/libcolt-free-java/*.html

libexternalsortinginjava-java-doc

• W embedded-javascript-library
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libexternalsortinginjava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W debian-rules-should-not-use-custom-compression-settings
  • dh_builddeb -- -Z xz (line 39)

libfastutil-java-doc

• E doc-base-file-references-wrong-path
  • libfastutil-java-doc:8 //usr/share/doc/libfastutil-java
  • libfastutil-java-doc:9 //usr/share/doc/libfastutil-java/*.html
• W embedded-javascript-library
  • usr/share/doc/libfastutil-java/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libfastutil-java/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libfastutil-java/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libfastutil-java/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libfastutil-java/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libfastutil-java/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 1.3.11+svn20110227.4616-2

libgtkdatabox0-glade (1:0.9.3.1-1+b1; main)

• E library-not-linked-against-libc
  • usr/lib/x86_64-linux-gnu/glade/modules/libgladedatabox.so

libgtkdatabox0-libglade (1:0.9.3.1-1+b1; main)

• E library-not-linked-against-libc
  • usr/lib/x86_64-linux-gnu/libglade/2.0/libdatabox.so

libhac-java-doc

• W embedded-javascript-library
  • usr/share/doc/libhac-java-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libhac-java-doc/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libhac-java-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

libhmsbeagle1v5

• W dev-pkg-without-shlib-symlink
  • usr/lib/i386-linux-gnu/libhmsbeagle-jni.so usr/lib/i386-linux-gnu/libhmsbeagle-jni.so
  • usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so
• W shlib-without-versioned-soname
  • usr/lib/i386-linux-gnu/libhmsbeagle-jni.so libhmsbeagle-jni.so
  • usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so libhmsbeagle-jni.so

• W ancient-standards-version
  • 3.9.8 (released 2016-04-06) (current is 4.4.1)
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/libjsonp-java.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/libjsonp-java.git

liblemon-dev

• W pkg-config-references-unknown-shared-library
  • usr/lib/i386-linux-gnu/pkgconfig/lemon.pc -lemon (line 9)
  • usr/lib/x86_64-linux-gnu/pkgconfig/lemon.pc -lemon (line 9)

liblemon-utils

• W binary-without-manpage
  • usr/bin/dimacs-solver [amd64, i386]
  • usr/bin/dimacs-to-lgf [amd64, i386]
  • usr/bin/lgf-gen [amd64, i386]
• W spelling-error-in-description
  • utilies utilities [amd64, i386]

• W missing-license-paragraph-in-dep5-copyright
  • gpl-3 (paragraph at line 27)

libmems-dev (1.6.0+4725-8+b1; main)

• W pkg-config-references-unknown-shared-library
  • usr/lib/i386-linux-gnu/pkgconfig/libMems.pc -lboost_filesystem (line 10)
  • usr/lib/i386-linux-gnu/pkgconfig/libMems.pc -lboost_iostreams (line 10)
  • usr/lib/i386-linux-gnu/pkgconfig/libMems.pc -lboost_program_options (line 10)
  • usr/lib/i386-linux-gnu/pkgconfig/libMems.pc -lboost_system (line 10)
  • usr/lib/x86_64-linux-gnu/pkgconfig/libMems.pc -lboost_filesystem (line 10)
  • usr/lib/x86_64-linux-gnu/pkgconfig/libMems.pc -lboost_iostreams (line 10)
  • usr/lib/x86_64-linux-gnu/pkgconfig/libMems.pc -lboost_program_options (line 10)
  • usr/lib/x86_64-linux-gnu/pkgconfig/libMems.pc -lboost_system (line 10)

• W spelling-error-in-patch-description
  • debian/patches/disable-dimension-test.patch reverese reverse

libmuscle1

• E symbols-file-contains-current-version-with-debian-revision
  • on symbol _ZNSt6vectorIcSaIcEE7reserveEj@Base

libncl-dev

• W pkg-config-references-unknown-shared-library
  • usr/lib/i386-linux-gnu/pkgconfig/nclv2.1.pc -llibncl.la (line 9)
  • usr/lib/x86_64-linux-gnu/pkgconfig/nclv2.1.pc -llibncl.la (line 9)

ncl-tools

• W binary-without-manpage
  • usr/bin/checktaxonnodes [amd64, i386]
  • usr/bin/findunsupportededges [amd64, i386]
  • usr/bin/otTreeInspect [amd64, i386]
  • usr/bin/otsubtree [amd64, i386]
  • usr/bin/outdeg1count [amd64, i386]

liboptions-java-doc

• E doc-base-file-references-wrong-path
  • liboptions-java-doc:8 //usr/share/doc/liboptions-java/api
  • liboptions-java-doc:9 //usr/share/doc/liboptions-java/api/*.html
• W embedded-javascript-library
  • usr/share/doc/liboptions-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/liboptions-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/liboptions-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/liboptions-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/liboptions-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/liboptions-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W obsolete-url-in-packaging
  • debian/copyright http://download.berlios.de/qtiplot/
  • debian/watch http://download.berlios.de/qtiplot/liborigin2-([0-9]*)\.zip
• W spelling-error-in-patch-description
  • debian/patches/01_makefile.diff unneccessary unnecessary

libpal-java-doc

• W embedded-javascript-library
  • usr/share/doc/libpal-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libpal-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W debian-watch-file-should-mangle-version
  • line 8

• W python-foo-but-no-python3-foo
  • python-corepywrap

libsbml5-java (5.17.2+dfsg-3+b3; main)

• W needless-dependency-on-jre

libsis-base-java

• W bad-jar-name
  • usr/share/java/sis-base-18.09~pre1+git20180827.fe4953e+dfsg.jar

libsis-base-jni

• W package-has-unnecessary-activation-of-ldconfig-trigger

• W global-files-wildcard-not-first-paragraph-in-dep5-copyright
  • (paragraph at line 12)

libsmithwaterman-dev

• W pkg-config-references-unknown-shared-library
  • usr/lib/i386-linux-gnu/pkgconfig/libsmithwaterman.pc -ldisorder (line 10)
  • usr/lib/x86_64-linux-gnu/pkgconfig/libsmithwaterman.pc -ldisorder (line 10)

• W maintainer-upload-has-incorrect-version-number
  • 1.6.3-2.1

libtfbs-perl (0.7.1-3+b1; main)

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/TFBS::SitePair.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/TFBS::DB::JASPAR.3pm.gz 160: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR2.3pm.gz 231: warning [p 3, 2.2i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR4.3pm.gz 173: warning [p 2, 4.0i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR5.3pm.gz 160: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR6.3pm.gz 160: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR7.3pm.gz 160: warning [p 2, 1.8i]: can't break line
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/TFBS::Matrix::Alignment.3pm.gz:196

libzeus-jscl-java-doc

• E doc-base-file-references-wrong-path
  • libzeus-jscl-java-doc:8 //usr/share/doc/libzeus-jscl-java
  • libzeus-jscl-java-doc:9 //usr/share/doc/libzeus-jscl-java/*.html
• W embedded-javascript-library
  • usr/share/doc/libzeus-jscl-java/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libzeus-jscl-java/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libzeus-jscl-java/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libzeus-jscl-java/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libzeus-jscl-java/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libzeus-jscl-java/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W ancient-standards-version
  • 3.9.7 (released 2016-02-01) (current is 4.4.1)
• W debhelper-tools-from-autotools-dev-are-deprecated
  • dh ... --with autotools_dev (line 6)
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/maude.git
  • vcs-git https://anonscm.debian.org/git/debian-med/maude.git

mauve-aligner

• W bad-jar-name
  • usr/share/java/Mauve.jar [amd64, i386]
• W binary-without-manpage
  • usr/bin/mauve [amd64, i386]
  • usr/bin/mauve-contig-mover [amd64, i386]

• W patch-file-present-but-not-mentioned-in-series
  • uzip_528239.patch

mc

• W uses-dpkg-database-directly
  • usr/lib/mc/extfs.d/apt+ [amd64, i386]
  • usr/lib/mc/extfs.d/debd [amd64, i386]
  • usr/lib/mc/extfs.d/dpkg+ [amd64, i386]

mcl

• W binary-without-manpage
  • usr/bin/clxdo [amd64, i386]

microbegps

• W binary-without-manpage
  • usr/bin/MicrobeGPS

minc-tools (2.3.00+dfsg-3+b1; main)

• W binary-without-manpage
  • usr/bin/minchistory [amd64, i386]
  • usr/bin/mincmorph [amd64, i386]
  • usr/bin/mincpik [amd64, i386]

• W debian-rules-should-not-use-custom-compression-settings
  • dh_builddeb -- -Z xz (line 53)

libmpj-java

• W binary-without-manpage
  • usr/bin/mpjboot
  • usr/bin/mpjclean
  • usr/bin/mpjdaemon
  • usr/bin/mpjhalt
  • usr/bin/mpjinfo
  • usr/bin/mpjrun
  • usr/bin/mpjstatus
  • usr/bin/runmpj

• W ancient-standards-version
  • 4.0.0 (released 2017-05-28) (current is 4.4.1)
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mrbayes.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mrbayes.git

mrbayes-doc

• W priority-extra-is-replaced-by-priority-optional

libmtj-java

• W bad-jar-name
  • usr/share/java/Matrix_Toolkits_for_Java-0.9.14.jar

libmtj-java-doc

• W embedded-javascript-library
  • usr/share/doc/libmtj-java/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libmtj-java/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libmtj-java/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libmtj-java/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libmtj-java/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libmtj-java/jquery/jquery-ui.min.js please use libjs-jquery-ui

• W unnecessary-team-upload

libnetlib-java

• W embedded-javascript-library
  • usr/share/doc/libnetlib-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libnetlib-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libnetlib-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libnetlib-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libnetlib-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libnetlib-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

node-pinkyswear

• W nodejs-module-installed-in-usr-lib
  • usr/lib/nodejs/pinkyswear/package.json
  • usr/lib/nodejs/pinkyswear/pinkyswear.js
  • usr/lib/nodejs/pinkyswear/pinkyswear.min.js

node-shiny-server-client

• W nodejs-module-installed-in-usr-lib
  • usr/lib/nodejs/shiny-server-client/common/message-buffer.js
  • usr/lib/nodejs/shiny-server-client/common/message-receiver.js
  • usr/lib/nodejs/shiny-server-client/common/message-utils.js
  • usr/lib/nodejs/shiny-server-client/common/path-params.js
  • usr/lib/nodejs/shiny-server-client/dist/shiny-server-client.js
  • usr/lib/nodejs/shiny-server-client/dist/shiny-server-client.min.js
  • usr/lib/nodejs/shiny-server-client/lib/debug.js
  • usr/lib/nodejs/shiny-server-client/lib/decorators/base-connection-decorator.js
  • usr/lib/nodejs/shiny-server-client/lib/decorators/connection-context.js
  • usr/lib/nodejs/shiny-server-client/lib/decorators/disconnect.js
  • usr/lib/nodejs/shiny-server-client/lib/decorators/extend-session.js
  • usr/lib/nodejs/shiny-server-client/lib/decorators/multiplex.js
  • usr/lib/nodejs/shiny-server-client/lib/decorators/reconnect.js
  • usr/lib/nodejs/shiny-server-client/lib/decorators/token.js
  • usr/lib/nodejs/shiny-server-client/lib/decorators/worker-id.js
  • usr/lib/nodejs/shiny-server-client/lib/fixup-url.js
  • usr/lib/nodejs/shiny-server-client/lib/log.js
  • usr/lib/nodejs/shiny-server-client/lib/main.js
  • usr/lib/nodejs/shiny-server-client/lib/multiplex-client.js
  • usr/lib/nodejs/shiny-server-client/lib/promised-connection.js
  • usr/lib/nodejs/shiny-server-client/lib/protocol-chooser.js
  • usr/lib/nodejs/shiny-server-client/lib/reconnect-ui.js
  • usr/lib/nodejs/shiny-server-client/lib/sockjs.js
  • usr/lib/nodejs/shiny-server-client/lib/subapp.js
  • usr/lib/nodejs/shiny-server-client/lib/ui.js
  • usr/lib/nodejs/shiny-server-client/lib/util.js
  • usr/lib/nodejs/shiny-server-client/lib/websocket.js
  • usr/lib/nodejs/shiny-server-client/package.json

opencfu

• W binary-without-manpage
  • usr/bin/opencfu [amd64, i386]

libopenslide-dev

• W manpage-has-errors-from-man
  • usr/share/man/man3/openslide-formats.3.gz 1902: warning [p 11, 3.8i, div '3tbd2,2', 0.5i]: can't break line [amd64, i386]

orthanc

• W package-has-unnecessary-activation-of-ldconfig-trigger

orthanc-wsi

• W package-has-unnecessary-activation-of-ldconfig-trigger

pbbamtools (0.23.0+dfsg-1+b1; main)

• W binary-without-manpage
  • usr/bin/bam2sam
  • usr/bin/pbbamify
  • usr/bin/pbindex
  • usr/bin/pbindexdump
  • usr/bin/pbmerge

• W python-foo-but-no-python3-foo
  • python-pbgenomicconsensus

pbgenomicconsensus

• W manpage-has-bad-whatis-entry
  • usr/share/man/man7/genomicconsensus.7.gz

pdb2pqr-doc

• W privacy-breach-generic
  • usr/share/doc/pdb2pqr/examples/index.html [<link rel="stylesheet" href="http://agave.wustl.edu/css/baker.css" type="text/css">] (http://agave.wustl.edu/css/baker.css)
  • usr/share/doc/pdb2pqr/programmerguide.html [<link rel="stylesheet" href="http://agave.wustl.edu/css/baker.css" type="text/css">] (http://agave.wustl.edu/css/baker.css)
  • usr/share/doc/pdb2pqr/pydoc/index.html [<link rel="stylesheet" href="http://agave.wustl.edu/css/baker.css" type="text/css">] (http://agave.wustl.edu/css/baker.css)
  • usr/share/doc/pdb2pqr/userguide.html [<link rel="stylesheet" href="http://agave.wustl.edu/css/baker.css" type="text/css">] (http://agave.wustl.edu/css/baker.css)

phast

• W manpage-has-errors-from-man
  • usr/share/man/man1/exoniphy.1.gz 160: warning [p 3, 3.5i]: can't break line [amd64, i386]
  • usr/share/man/man1/prequel.1.gz 40: warning [p 1, 6.8i]: cannot adjust line [amd64, i386]

phipack

• W binary-without-manpage
  • usr/bin/phipack-phi [amd64, i386]
  • usr/bin/phipack-ppma_2_bmp [amd64, i386]
  • usr/bin/phipack-profile [amd64, i386]

phybin

• W hardening-no-pie
  • usr/bin/phybin [amd64, i386]

phylip

• W bad-jar-name
  • usr/share/java/DrawTree-3.697+dfsg.jar
• W binary-without-manpage
  • usr/bin/DrawGram
  • usr/bin/DrawTree

libpicard-java-doc

• E doc-base-file-references-wrong-path
  • libpicard-java-doc:8 //usr/share/doc/libpicard-java/api/
  • libpicard-java-doc:9 //usr/share/doc/libpicard-java/api//*.html
• W embedded-javascript-library
  • usr/share/doc/libpicard-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libpicard-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libpicard-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libpicard-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libpicard-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

pirs

• W binary-without-manpage
  • usr/bin/alignment_stator [amd64, i386]
  • usr/bin/baseCalling_Matrix_analyzer [amd64, i386]
  • usr/bin/baseCalling_Matrix_calculator [amd64, i386]
  • usr/bin/baseCalling_Matrix_calculator.0 [amd64, i386]
  • usr/bin/baseCalling_Matrix_merger [amd64, i386]
  • usr/bin/baseCalling_Matrix_merger.old [amd64, i386]
  • usr/bin/gc_coverage_bias [amd64, i386]
  • usr/bin/gc_coverage_bias_plot [amd64, i386]
  • usr/bin/gethist [amd64, i386]
  • usr/bin/ifollowQ [amd64, i386]
  • usr/bin/ifollowQmerge [amd64, i386]
  • usr/bin/ifollowQplot [amd64, i386]
  • usr/bin/ifqQ [amd64, i386]
  • usr/bin/indelstat_sam_bam [amd64, i386]
  • usr/bin/itilestator [amd64, i386]
  • usr/bin/loess [amd64, i386]
  • usr/bin/pifollowQmerge [amd64, i386]
  • usr/bin/pirs [amd64, i386]

libpixelmed-java-doc

• W embedded-javascript-library
  • usr/share/doc/libpixelmed-java/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libpixelmed-java/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libpixelmed-java/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libpixelmed-java/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libpixelmed-java/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libpixelmed-java/jquery/jquery-ui.min.js please use libjs-jquery-ui

pixelmed-apps

• W manpage-has-errors-from-man
  • usr/share/man/man1/DicomSRValidator.1.gz 11: warning [p 1, 2.0i]: cannot adjust line
  • usr/share/man/man1/StructuredReport.1.gz 11: warning [p 1, 2.0i]: cannot adjust line

pixelmed-www

• W privacy-breach-generic
  • usr/share/pixelmed/ConvertAmicasJPEG2000FilesetToDicom.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/DicomCleaner.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/DicomImageBlackout.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/DicomImageViewer.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/DoseUtility.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/MediaImporter.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)
  • usr/share/pixelmed/WatchFolderAndSend.html [<script src="http://www.java.com/js/deployjava.js">] (http://www.java.com/js/deployjava.js)

libpixelmed-codec-java

• W bad-jar-name
  • usr/share/java/pixelmed_codec-20170512.jar

pngquant

• W manpage-has-errors-from-man
  • usr/share/man/man1/pngquant.1.gz 129: name expected (got '\c'): treated as missing

proteinortho

• W manpage-has-errors-from-man
  • usr/share/man/man1/proteinortho6.1.gz 21: warning [p 1, 3.8i]: cannot adjust line

• W python-foo-but-no-python3-foo
  • python-cogent

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

python3-jsondiff

• W binary-without-manpage
  • usr/bin/jsondiff-jsondiff
• W maintainer-script-should-not-use-update-alternatives-remove
  • postrm:6

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 1.0.1-2

python-pyfaidx-examples

• W python-package-depends-on-package-from-other-python-variant
  • Suggests: python3-pyfaidx

pyvcf

• W binary-without-manpage
  • usr/bin/vcf_sample_filter

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

python-ruffus

• W script-not-executable
  • usr/lib/python2.7/dist-packages/ruffus/test/run_all_unit_tests.cmd

python-skbio-doc

• W embedded-javascript-library
  • usr/share/doc/python-skbio-doc/html/_static/bootstrap-2.3.2/js/bootstrap.js please use libjs-bootstrap
  • usr/share/doc/python-skbio-doc/html/_static/bootstrap-3.3.7/js/bootstrap.js please use libjs-bootstrap
  • usr/share/doc/python-skbio-doc/html/_static/js/jquery-1.11.0.min.js please use libjs-jquery

• W ancient-python-version-field
  • x-python-version 3.4
• W ancient-standards-version
  • 3.9.8 (released 2016-04-06) (current is 4.4.1)
• W spelling-error-in-patch-description
  • debian/patches/check_fasta.patch formated formatted
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/qcumber.git
  • vcs-git https://anonscm.debian.org/git/debian-med/qcumber.git

qcumber

• W manpage-has-errors-from-man
  • usr/share/man/man1/qcumber.1.gz 9: warning [p 1, 1.8i]: cannot adjust line

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 2.6+dfsg-1

r-cran-animation

• W privacy-breach-generic
  • usr/lib/R/site-library/animation/misc/Rweb/index.html [<link rel="stylesheet" href="http://gitorious.org/yihui/animation/blobs/raw/master/inst/misc/scianimator/css/shcore.css" />] (http://gitorious.org/yihui/animation/blobs/raw/master/inst/misc/scianimator/css/shcore.css)
  • usr/lib/R/site-library/animation/misc/Rweb/index.html [<link rel="stylesheet" href="http://gitorious.org/yihui/animation/blobs/raw/master/inst/misc/scianimator/css/shthemedefault.css" />] (http://gitorious.org/yihui/animation/blobs/raw/master/inst/misc/scianimator/css/shthemedefault.css)
  • usr/lib/R/site-library/animation/misc/Rweb/index.html [<script src="http://gitorious.org/yihui/animation/blobs/raw/master/inst/misc/scianimator/js/shautoloader.js">] (http://gitorious.org/yihui/animation/blobs/raw/master/inst/misc/scianimator/js/shautoloader.js)
  • usr/lib/R/site-library/animation/misc/Rweb/index.html [<script src="http://gitorious.org/yihui/animation/blobs/raw/master/inst/misc/scianimator/js/shcore.js">] (http://gitorious.org/yihui/animation/blobs/raw/master/inst/misc/scianimator/js/shcore.js)
  • usr/lib/R/site-library/animation/misc/scianimator/index.html [<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/8.3/languages/r.min.js">] (https://cdnjs.cloudflare.com/ajax/libs/highlight.js/8.3/languages/r.min.js)

r-cran-askpass

• W unusual-interpreter
  • usr/lib/R/site-library/askpass/mac-simplepass #!osascript
  • usr/lib/R/site-library/askpass/mac-simplepass #!osascript

r-cran-backports

• E library-not-linked-against-libc
  • usr/lib/R/site-library/backports/libs/backports.so [amd64, i386]

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 1.1-0-1

r-cran-bradleyterry2

• W executable-not-elf-or-script
  • usr/lib/R/site-library/BradleyTerry2/WORDLIST

r-cran-brew

• E missing-depends-on-sensible-utils
  • usr/lib/R/site-library/brew/brew-test-2.html

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 0.6.2-1

• W autotools-pkg-config-macro-not-cross-compilation-safe
  • configure.ac (line 40)

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-fansi

• W executable-not-elf-or-script
  • usr/lib/R/site-library/fansi/doc/sgr-in-rmd.Rmd [amd64, i386]

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 1.1.25-3

r-cran-fdrtool (1.2.15-1+b1; main)

• E library-not-linked-against-libc
  • usr/lib/R/site-library/fdrtool/libs/fdrtool.so

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• E source-is-missing
  • inst/doc/magrittr.html line length is 10394 characters (>512)

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-mets

• W privacy-breach-generic
  • usr/lib/R/site-library/mets/misc/obs/workshop.html [<link rel="stylesheet" type="text/css" href="http://www.biostat.ku.dk/~kkho/styles/orgmode.css">] (http://www.biostat.ku.dk/~kkho/styles/orgmode.css) [amd64, i386]

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-plumber

• W privacy-breach-generic
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<link href="https://fonts.googleapis.com/css?family=open+sans:400,700|source+code+pro:300,600|titillium+web:400,600,700" rel="stylesheet">] (https://fonts.googleapis.com/css?family=open+sans:400,700|source+code+pro:300,600|titillium+web:400,600,700)
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<link rel="icon" type="image/png" href="https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/favicon-16x16.png" sizes="16x16" />] (https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/favicon-16x16.png)
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<link rel="icon" type="image/png" href="https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/favicon-32x32.png" sizes="32x32" />] (https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/favicon-32x32.png)
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<link rel="stylesheet" type="text/css" href="https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui.css" >] (https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui.css)
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<script src="https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui-bundle.js">] (https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui-bundle.js)
  • usr/lib/R/site-library/plumber/swagger-ui/index.html [<script src="https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui-standalone-preset.js">] (https://d1njj2isj9f6x9.cloudfront.net/swagger-ui/v3.0.14/swagger-ui-standalone-preset.js)

r-cran-promises

• W privacy-breach-generic
  • usr/lib/R/site-library/promises/doc/casestudy.html [<iframe class="embed-responsive-item" src="https://www.youtube-nocookie.com/embed/hsjdezmnb0w?rel=0&amp;showinfo=0&amp;ecver=1" frameborder="0" allow="autoplay; encrypted-media" allowfullscreen>] (https://www.youtube-nocookie.com/embed/hsjdezmnb0w?rel=0&amp;showinfo=0&amp;ecver=1) [amd64, i386]

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-rhandsontable

• W symlink-should-be-relative
  • usr/lib/R/site-library/rhandsontable/htmlwidgets/lib/jquery/jquery.min.js /usr/share/javascript/jquery/jquery.min.js

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-rwiener

• E library-not-linked-against-libc
  • usr/lib/R/site-library/RWiener/libs/RWiener.so

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-sendmailr

• W spelling-error-in-description
  • attachements attachments

r-cran-shinythemes

• W privacy-breach-generic
  • usr/lib/R/site-library/shinythemes/shinythemes/css/yeti.min.css [@import url("https://fonts.googleapis.com/css?family=open+sans:300italic,400italic,700italic,400,300,700");] (https://fonts.googleapis.com/css?family=open+sans:300italic,400italic,700italic,400,300,700)

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 1.16.0-1

• W autotools-pkg-config-macro-not-cross-compilation-safe
  • configure.ac (line 432)

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-cran-treescape

• W privacy-breach-generic
  • usr/lib/R/site-library/treescape/shiny/www/bootstrap.simplex.css [@import url("https://fonts.googleapis.com/css?family=open+sans:400,700");] (https://fonts.googleapis.com/css?family=open+sans:400,700) [amd64, i386]

r-cran-treespace

• W privacy-breach-generic
  • usr/lib/R/site-library/treespace/shiny/www/bootstrap.simplex.css [@import url("https://fonts.googleapis.com/css?family=open+sans:400,700");] (https://fonts.googleapis.com/css?family=open+sans:400,700) [amd64, i386]

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

• W debian-tests-control-autodep8-is-obsolete
  • debian/tests/control.autodep8

r-other-chbutils

• W spelling-error-in-description
  • Plots Plots (duplicate word) Plots
  • Plots Plots (duplicate word) Plots

radiant

• W binary-without-manpage
  • usr/bin/kronatools_updateTaxonomy
  • usr/bin/ktClassifyBLAST
  • usr/bin/ktGetContigMagnitudes
  • usr/bin/ktGetLCA
  • usr/bin/ktGetLibPath
  • usr/bin/ktGetTaxIDFromAcc
  • usr/bin/ktGetTaxInfo
  • usr/bin/ktImportBLAST
  • usr/bin/ktImportDiskUsage
  • usr/bin/ktImportEC
  • usr/bin/ktImportFCP
  • usr/bin/ktImportGalaxy
  • usr/bin/ktImportKrona
  • usr/bin/ktImportMETAREP-EC
  • usr/bin/ktImportMETAREP-blast
  • usr/bin/ktImportMGRAST
  • usr/bin/ktImportPhymmBL
  • usr/bin/ktImportRDP
  • usr/bin/ktImportRDPComparison
  • usr/bin/ktImportTaxonomy
  • usr/bin/ktImportText
  • usr/bin/ktImportXML

raxml

• W manpage-has-errors-from-man
  • usr/share/man/man1/raxmlHPC.1.gz 36: warning [p 1, 5.7i]: can't break line [amd64, i386]

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 1.2.0-5

rdp-alignment

• E possible-missing-colon-in-closes
  • Closes #912388

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 2.10.2-4

rdp-classifier

• E possible-missing-colon-in-closes
  • Closes #912385

rdp-classifier-doc

• W embedded-javascript-library
  • usr/share/doc/rdp-classifier-doc/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/rdp-classifier-doc/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/rdp-classifier-doc/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
• E possible-missing-colon-in-closes
  • Closes #912385

• W debian-source-options-has-custom-compression-settings
  • compression = "xz" (line 1)
• W debian-watch-file-should-mangle-version
  • line 3
• W unnecessary-team-upload

• W obsolete-runtime-tests-restriction
  • needs-recommends paragraph starting at line 9

rsem

• W binary-without-manpage
  • usr/bin/extract-transcript-to-gene-map-from-trinity
  • usr/bin/rsem-bam2readdepth
  • usr/bin/rsem-build-read-index
  • usr/bin/rsem-calculate-credibility-intervals
  • usr/bin/rsem-extract-reference-transcripts
  • usr/bin/rsem-gen-transcript-plots
  • usr/bin/rsem-generate-data-matrix
  • usr/bin/rsem-get-unique
  • usr/bin/rsem-parse-alignments
  • usr/bin/rsem-plot-model
  • usr/bin/rsem-preref
  • usr/bin/rsem-refseq-extract-primary-assembly
  • usr/bin/rsem-run-em
  • usr/bin/rsem-run-gibbs
  • usr/bin/rsem-sam-validator
  • usr/bin/rsem-scan-for-paired-end-reads
  • usr/bin/rsem-synthesis-reference-transcripts
  • usr/bin/rsem-tbam2gbam
  • usr/bin/rsem_perl_utils.pm

• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/sambamba.git
  • vcs-git https://anonscm.debian.org/git/debian-med/sambamba.git

scoary

• W binary-without-manpage
  • usr/bin/scoary_GUI

seer (1.1.4-2+b2; main)

• W binary-without-manpage
  • usr/bin/blastn_to_phandango

seqan-dev

• W spelling-error-in-readme-debian
  • sould should

libseqan2-dev

• W pkg-config-references-unknown-shared-library
  • usr/share/pkgconfig/seqan-2.pc -lbz2 (line 9)

seqmagick

• W manpage-has-errors-from-man
  • usr/share/man/man1/seqmagick.1.gz 8: warning [p 1, 1.7i]: cannot adjust line

sga

• W privacy-breach-generic
  • usr/share/doc/sga/index.html [<img border="0" width="90" src="http://github.com/images/modules/download/tar.png">] (http://github.com/images/modules/download/tar.png)
  • usr/share/doc/sga/index.html [<img border="0" width="90" src="http://github.com/images/modules/download/zip.png">] (http://github.com/images/modules/download/zip.png)

• E source-contains-unsafe-symlink
  • coding_info/Homo_sapien_36
  • coding_info/Homo_sapien_37
  • db/Human_db_36
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/sift.git
  • vcs-git https://anonscm.debian.org/git/debian-med/sift.git

sift

• W binary-without-manpage
  • usr/bin/SIFT_exome_nssnvs.pl
  • usr/bin/map_coords_to_bin.pl
  • usr/bin/sift_feed_to_chr_coords_batch.pl
  • usr/bin/snv_db_engine.pl
• W csh-considered-harmful
  • usr/lib/sift/bin/SIFT_for_submitting_NCBI_gi_id.csh
  • usr/lib/sift/bin/SIFT_for_submitting_fasta_seq.csh
  • usr/lib/sift/bin/seqs_chosen_via_median_info.csh
  • usr/share/sift/blimps/docs/coduse.csh

snap

• W script-with-language-extension
  • usr/bin/hmm-assembler.pl
  • usr/bin/patch-hmm.pl
  • usr/bin/zff2gff3.pl

• W ancient-standards-version
  • 4.0.0 (released 2017-05-28) (current is 4.4.1)
• W spelling-error-in-patch-description
  • debian/patches/50_all_changes.diff Debians Debian's
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/sofa-framework.git
  • vcs-git https://anonscm.debian.org/git/debian-med/sofa-framework.git

• W patch-file-present-but-not-mentioned-in-series
  • follow_hint_from_README.patch

squizz

• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/squizz.1.gz [amd64, i386]
  • usr/share/man/man5/alifmt.5.gz [amd64, i386]
  • usr/share/man/man5/seqfmt.5.gz [amd64, i386]

sra-toolkit (2.9.3+dfsg-1+b1; main)

• W binary-without-manpage
  • usr/bin/abi-dump
  • usr/bin/abi-load
  • usr/bin/align-info
  • usr/bin/bam-load
  • usr/bin/cache-mgr
  • usr/bin/cg-load
  • usr/bin/copycat
  • usr/bin/fasterq-dump
  • usr/bin/fastq-dump
  • usr/bin/fastq-load
  • usr/bin/helicos-load
  • usr/bin/illumina-dump
  • usr/bin/illumina-load
  • usr/bin/kar
  • usr/bin/kdbmeta
  • usr/bin/latf-load
  • usr/bin/pacbio-load
  • usr/bin/prefetch
  • usr/bin/rcexplain
  • usr/bin/remote-fuser
  • usr/bin/sam-dump
  • usr/bin/sff-dump
  • usr/bin/sff-load
  • usr/bin/sra-pileup
  • usr/bin/sra-sort
  • usr/bin/sra-stat
  • usr/bin/srapath
  • usr/bin/srf-load
  • usr/bin/test-sra
  • usr/bin/vdb-config
  • usr/bin/vdb-copy
  • usr/bin/vdb-decrypt
  • usr/bin/vdb-dump
  • usr/bin/vdb-encrypt
  • usr/bin/vdb-get
  • usr/bin/vdb-lock
  • usr/bin/vdb-passwd
  • usr/bin/vdb-unlock
  • usr/bin/vdb-validate
• W package-contains-timestamped-gzip
  • usr/share/doc/sra-toolkit/test-data.tar.gz

stacks

• W binary-without-manpage
  • usr/bin/stacks

staden

• W binary-without-manpage
  • usr/bin/staden [amd64, i386]

libstaden-read-dev

• W binary-without-manpage
  • usr/bin/io_lib-config [amd64, i386]

staden-io-lib-examples

• W zero-byte-file-in-doc-directory
  • usr/share/doc/staden-io-lib/test/data/xx#blank.sam

staden-io-lib-utils

• W binary-without-manpage
  • usr/bin/convert_trace [amd64, i386]
  • usr/bin/cram_dump [amd64, i386]
  • usr/bin/cram_filter [amd64, i386]
  • usr/bin/cram_index [amd64, i386]
  • usr/bin/cram_size [amd64, i386]
  • usr/bin/extract_fastq [amd64, i386]
  • usr/bin/extract_qual [amd64, i386]
  • usr/bin/extract_seq [amd64, i386]
  • usr/bin/get_comment [amd64, i386]
  • usr/bin/hash_exp [amd64, i386]
  • usr/bin/hash_extract [amd64, i386]
  • usr/bin/hash_list [amd64, i386]
  • usr/bin/hash_sff [amd64, i386]
  • usr/bin/hash_tar [amd64, i386]
  • usr/bin/index_tar [amd64, i386]
  • usr/bin/makeSCF [amd64, i386]
  • usr/bin/scf_dump [amd64, i386]
  • usr/bin/scf_info [amd64, i386]
  • usr/bin/scf_update [amd64, i386]
  • usr/bin/scram_flagstat [amd64, i386]
  • usr/bin/scram_merge [amd64, i386]
  • usr/bin/scram_pileup [amd64, i386]
  • usr/bin/scram_test [amd64, i386]
  • usr/bin/srf_extract_hash [amd64, i386]
  • usr/bin/srf_extract_linear [amd64, i386]
  • usr/bin/trace_dump [amd64, i386]
  • usr/bin/ztr_dump [amd64, i386]

• W spelling-error-in-patch-description
  • debian/patches/allow_cxx_override.patch "allow to" "allow one to"

swarm

• W privacy-breach-generic
  • usr/share/doc/swarm/README.html [<img alt="" src="https://github.com/frederic-mahe/swarm/blob/master/figures/swarm_2.0_fastidious_reduced.png" />] (https://github.com/frederic-mahe/swarm/blob/master/figures/swarm_2.0_fastidious_reduced.png)

libswiss-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/SWISS::ACs.3pm.gz
  • usr/share/man/man3/SWISS::BaseClass.3pm.gz
  • usr/share/man/man3/SWISS::CC.3pm.gz
  • usr/share/man/man3/SWISS::CCalt_prod.3pm.gz
  • usr/share/man/man3/SWISS::CCbpc_properties.3pm.gz
  • usr/share/man/man3/SWISS::CCcofactor.3pm.gz
  • usr/share/man/man3/SWISS::CCcopyright.3pm.gz
  • usr/share/man/man3/SWISS::CCdisease.3pm.gz
  • usr/share/man/man3/SWISS::CCinteraction.3pm.gz
  • usr/share/man/man3/SWISS::CCrna_editing.3pm.gz
  • usr/share/man/man3/SWISS::CCs.3pm.gz
  • usr/share/man/man3/SWISS::CCseq_caution.3pm.gz
  • usr/share/man/man3/SWISS::CCsubcell_location.3pm.gz
  • usr/share/man/man3/SWISS::DE.3pm.gz
  • usr/share/man/man3/SWISS::DEs.3pm.gz
  • usr/share/man/man3/SWISS::DRs.3pm.gz
  • usr/share/man/man3/SWISS::DTs.3pm.gz
  • usr/share/man/man3/SWISS::Entry.3pm.gz
  • usr/share/man/man3/SWISS::FTs.3pm.gz
  • usr/share/man/man3/SWISS::GN.3pm.gz
  • usr/share/man/man3/SWISS::GNs.3pm.gz
  • usr/share/man/man3/SWISS::GeneGroup.3pm.gz
  • usr/share/man/man3/SWISS::IDs.3pm.gz
  • usr/share/man/man3/SWISS::KW.3pm.gz
  • usr/share/man/man3/SWISS::KWs.3pm.gz
  • usr/share/man/man3/SWISS::ListBase.3pm.gz
  • usr/share/man/man3/SWISS::OCs.3pm.gz
  • usr/share/man/man3/SWISS::OG.3pm.gz
  • usr/share/man/man3/SWISS::OGs.3pm.gz
  • usr/share/man/man3/SWISS::OH.3pm.gz
  • usr/share/man/man3/SWISS::OHs.3pm.gz
  • usr/share/man/man3/SWISS::OS.3pm.gz
  • usr/share/man/man3/SWISS::OSs.3pm.gz
  • usr/share/man/man3/SWISS::OX.3pm.gz
  • usr/share/man/man3/SWISS::OXs.3pm.gz
  • usr/share/man/man3/SWISS::PE.3pm.gz
  • usr/share/man/man3/SWISS::RCelement.3pm.gz
  • usr/share/man/man3/SWISS::Ref.3pm.gz
  • usr/share/man/man3/SWISS::Refs.3pm.gz
  • usr/share/man/man3/SWISS::SQs.3pm.gz
  • usr/share/man/man3/SWISS::Stars.3pm.gz
  • usr/share/man/man3/SWISS::Stars::DR.3pm.gz
  • usr/share/man/man3/SWISS::Stars::EV.3pm.gz
  • usr/share/man/man3/SWISS::Stars::aa.3pm.gz
  • usr/share/man/man3/SWISS::Stars::default.3pm.gz
  • usr/share/man/man3/SWISS::TextFunc.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/SWISS::CCalt_prod.3pm.gz:465
  • usr/share/man/man3/SWISS::CCbpc_properties.3pm.gz:176
  • usr/share/man/man3/SWISS::CCcofactor.3pm.gz:178
  • usr/share/man/man3/SWISS::CCdisease.3pm.gz:197
  • usr/share/man/man3/SWISS::CCrna_editing.3pm.gz:177
  • usr/share/man/man3/SWISS::CCsubcell_location.3pm.gz:196
  • usr/share/man/man3/SWISS::DE.3pm.gz:243
  • usr/share/man/man3/SWISS::Entry.3pm.gz:261
  • usr/share/man/man3/SWISS::IDs.3pm.gz:182
  • usr/share/man/man3/SWISS::OGs.3pm.gz:166
  • usr/share/man/man3/SWISS::OS.3pm.gz:162
  • usr/share/man/man3/SWISS::OX.3pm.gz:165
  • usr/share/man/man3/SWISS::OXs.3pm.gz:177
  • usr/share/man/man3/SWISS::RCelement.3pm.gz:167
  • usr/share/man/man3/SWISS::Ref.3pm.gz:220
  • usr/share/man/man3/SWISS::Stars::DR.3pm.gz:161
  • usr/share/man/man3/SWISS::Stars::aa.3pm.gz:161
  • usr/share/man/man3/SWISS::Stars::default.3pm.gz:161

• W dep5-copyright-license-name-not-unique
  • gpl-2 (paragraph at line 126)
  • gpl-2 (paragraph at line 142)
  • gpl-2 (paragraph at line 150)
  • gpl-2 (paragraph at line 31)
  • gpl-3 (paragraph at line 31)
  • gpl-3 (paragraph at line 39)
  • lgpl-2 (paragraph at line 126)
  • lgpl-2 (paragraph at line 135)
  • lgpl-2.1 (paragraph at line 142)
  • lgpl-2.1 (paragraph at line 150)
  • mpl-1.1 (paragraph at line 142)
  • mpl-1.1 (paragraph at line 150)
• W inconsistent-appstream-metadata-license
  • utilities/texmaker.appdata.xml (cc0-1.0 != gpl-2+)

theseus

• W manpage-has-errors-from-man
  • usr/share/man/man1/theseus.1.gz 500: warning: macro '{' not defined [amd64, i386]

tifffile

• W binary-without-manpage
  • usr/bin/lsm2bin [amd64, i386]

tophat (2.1.1+dfsg1-2+b1; main)

• W binary-without-manpage
  • usr/bin/bam_merge
  • usr/bin/fix_map_ordering
  • usr/bin/gtf_juncs
  • usr/bin/gtf_to_fasta
  • usr/bin/juncs_db
  • usr/bin/long_spanning_reads
  • usr/bin/map2gtf
  • usr/bin/prep_reads
  • usr/bin/sam_juncs
  • usr/bin/segment_juncs
  • usr/bin/sra_to_solid
  • usr/bin/tophat-fusion-post
  • usr/bin/tophat2
  • usr/bin/tophat_reports

toppred

• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/toppred.1.gz

• W patch-file-present-but-not-mentioned-in-series
  • patch_test_results.patch

tvc

• W binary-without-manpage
  • usr/bin/tvc
  • usr/bin/tvcassembly
  • usr/bin/tvcutils
  • usr/bin/variant_caller_pipeline.py

uc-echo

• E binary-from-other-architecture
  • usr/lib/uc-echo/HashMerge [amd64, i386]
  • usr/lib/uc-echo/NeighborJoin [amd64, i386]
  • usr/lib/uc-echo/NeighborJoinParam [amd64, i386]
  • usr/lib/uc-echo/NeighborMerge [amd64, i386]
  • usr/lib/uc-echo/Voting [amd64, i386]
  • usr/lib/uc-echo/hashing [amd64, i386]

ugene

• W package-has-unnecessary-activation-of-ldconfig-trigger

• W python-foo-but-no-python3-foo
  • python-consensuscore2

velvetoptimiser

• W incorrect-path-for-interpreter
  • usr/bin/velvetoptimiser (#!/usr/bin/env perl != /usr/bin/perl)

virulencefinder

• W binary-without-manpage
  • usr/bin/virulencefinder.py

libvolpack1-dev

• W manpage-has-errors-from-man
  • usr/share/man/man3/BruteForce.3.gz pic:@??V?U:71: fatal error: output error
  • usr/share/man/man3/BruteForce.3.gz pic:@?Ed7V:71: fatal error: output error
  • usr/share/man/man3/Callback.3.gz pic:@??v?V:228: fatal error: output error
  • usr/share/man/man3/Callback.3.gz pic:@?h??U:228: fatal error: output error
  • usr/share/man/man3/ClientData.3.gz pic:@?? ?U:79: fatal error: output error
  • usr/share/man/man3/ClientData.3.gz pic:@}+t?U:79: fatal error: output error
  • usr/share/man/man3/ClsfyScalar.3.gz No such file or directory
  • usr/share/man/man3/ClsfyScalar.3.gz pic:@???zU:126: fatal error: output error
  • usr/share/man/man3/ClsfyScan.3.gz pic:@-???U:107: fatal error: output error
  • usr/share/man/man3/ClsfyScan.3.gz pic:@-XvMV:107: fatal error: output error
  • usr/share/man/man3/ClsfyTable.3.gz pic:@?8?{U:155: fatal error: output error
  • usr/share/man/man3/ClsfyTable.3.gz pic:@??'OV:155: fatal error: output error
  • usr/share/man/man3/ClsfyVolume.3.gz pic:@????U:137: fatal error: output error
  • usr/share/man/man3/ClsfyVolume.3.gz pic:@m???U:137: fatal error: output error
  • usr/share/man/man3/Context.3.gz pic:@??Q?V:82: fatal error: output error
  • usr/share/man/man3/CurrentMatrix.3.gz pic:@=??hU:126: fatal error: output error
  • usr/share/man/man3/CurrentMatrix.3.gz pic:@]???U:126: fatal error: output error
  • usr/share/man/man3/Debug.3.gz pic:@]?%?U:114: fatal error: output error
  • usr/share/man/man3/Debug.3.gz pic:@}?FlU:114: fatal error: output error
  • usr/share/man/man3/DepthCueing.3.gz pic:@??G?U:138: fatal error: output error
  • usr/share/man/man3/DepthCueing.3.gz pic:@M:??U:138: fatal error: output error
  • usr/share/man/man3/Error.3.gz pic:@????V:86: fatal error: output error
  • usr/share/man/man3/Error.3.gz pic:@?B??U:86: fatal error: output error
  • usr/share/man/man3/Extract.3.gz pic:@????U:184: fatal error: output error
  • usr/share/man/man3/Extract.3.gz pic:@?[??V:184: fatal error: output error
  • usr/share/man/man3/Filter.3.gz pic:@=???V:124: fatal error: output error
  • usr/share/man/man3/Filter.3.gz pic:@??VHV:124: fatal error: output error
  • usr/share/man/man3/FilterTab.3.gz pic:@-u??U:158: fatal error: output error
  • usr/share/man/man3/FilterTab.3.gz pic:@}??&V:158: fatal error: output error
  • usr/share/man/man3/Get.3.gz pic:@?;??U:337: fatal error: output error
  • usr/share/man/man3/GetImage.3.gz : No such file or directory
  • usr/share/man/man3/GetImage.3.gz pic:@??~OV:130: fatal error: output error
  • usr/share/man/man3/GetLight.3.gz pic:@???@V:93: fatal error: output error
  • usr/share/man/man3/GetLight.3.gz pic:@?L??V:93: fatal error: output error
  • usr/share/man/man3/GetMaterial.3.gz pic:@????V:101: fatal error: output error
  • usr/share/man/man3/GetMaterial.3.gz pic:@?RY?U:101: fatal error: output error
  • usr/share/man/man3/GetMatrix.3.gz pic:@?d?:86: fatal error: output error
  • usr/share/man/man3/GetMatrix.3.gz pic:@m???U:86: fatal error: output error
  • usr/share/man/man3/Identity.3.gz : No such file or directory
  • usr/share/man/man3/Identity.3.gz pic:@=H??U:74: fatal error: output error
  • usr/share/man/man3/Image.3.gz pic:@?/G2V:152: fatal error: output error
  • usr/share/man/man3/Image.3.gz pic:@?1
  • usr/share/man/man3/Light.3.gz No such file or directory
  • usr/share/man/man3/Light.3.gz pic:@????V:138: fatal error: output error
  • usr/share/man/man3/LinAlgebra.3.gz pic:@??rCV:177: fatal error: output error
  • usr/share/man/man3/LinAlgebra.3.gz pic:@m??9V:177: fatal error: output error
  • usr/share/man/man3/Load.3.gz pic:@-x?2V:181: fatal error: output error
  • usr/share/man/man3/Load.3.gz pic:@}0?tU:181: fatal error: output error
  • usr/share/man/man3/LookupShader.3.gz pic:@???AV:219: fatal error: output error
  • usr/share/man/man3/LookupShader.3.gz pic:@?R?oU:219: fatal error: output error
  • usr/share/man/man3/Material.3.gz No such file or directory
  • usr/share/man/man3/Material.3.gz pic:@M???U:178: fatal error: output error
  • usr/share/man/man3/MinMaxOctree.3.gz pic:@?\{?U:172: fatal error: output error
  • usr/share/man/man3/MinMaxOctree.3.gz pic:@?d?QV:172: fatal error: output error
  • usr/share/man/man3/MultMatrix.3.gz pic:@?K?VU:86: fatal error: output error
  • usr/share/man/man3/MultMatrix.3.gz pic:@m}??U:86: fatal error: output error
  • usr/share/man/man3/NormalIndex.3.gz pic:@?+??V:116: fatal error: output error
  • usr/share/man/man3/OctreeMask.3.gz pic:@???sU:121: fatal error: output error
  • usr/share/man/man3/Ramp.3.gz pic:@????U:107: fatal error: output error
  • usr/share/man/man3/Ramp.3.gz pic:@Mv?}U:107: fatal error: output error
  • usr/share/man/man3/RawVoxels.3.gz pic:@-??kU:115: fatal error: output error
  • usr/share/man/man3/RawVoxels.3.gz pic:@?,??U:115: fatal error: output error
  • usr/share/man/man3/Render.3.gz pic:@???#V:156: fatal error: output error
  • usr/share/man/man3/Render.3.gz pic:@?J@3V:156: fatal error: output error
  • usr/share/man/man3/Resample.3.gz pic:@=??<V:200: fatal error: output error
  • usr/share/man/man3/Resample.3.gz pic:@?VdzU:200: fatal error: output error
  • usr/share/man/man3/Rotate.3.gz pic:@-v$?U:141: fatal error: output error
  • usr/share/man/man3/Rotate.3.gz pic:@?O??U:141: fatal error: output error
  • usr/share/man/man3/Scale.3.gz pic:@M??GV:104: fatal error: output error
  • usr/share/man/man3/Scale.3.gz pic:@}C??U:104: fatal error: output error
  • usr/share/man/man3/ScanNormals.3.gz pic:@?V;?U:159: fatal error: output error
  • usr/share/man/man3/ScanNormals.3.gz pic:@?a??U:159: fatal error: output error
  • usr/share/man/man3/Set.3.gz pic:@??xUU:157: fatal error: output error
  • usr/share/man/man3/Set.3.gz pic:@M???U:157: fatal error: output error
  • usr/share/man/man3/SetMatrix.3.gz pic:@-???U:80: fatal error: output error
  • usr/share/man/man3/SetMatrix.3.gz pic:@????U:80: fatal error: output error
  • usr/share/man/man3/ShadeTable.3.gz pic:@????V:106: fatal error: output error
  • usr/share/man/man3/ShadeTable.3.gz pic:@]?z?V:106: fatal error: output error
  • usr/share/man/man3/Shadow.3.gz pic:@??I?V:222: fatal error: output error
  • usr/share/man/man3/Shadow.3.gz pic:@??O?U:222: fatal error: output error
  • usr/share/man/man3/Store.3.gz No such file or directory
  • usr/share/man/man3/Store.3.gz pic:@????U:138: fatal error: output error
  • usr/share/man/man3/Timer.3.gz pic:@??%?V:140: fatal error: output error
  • usr/share/man/man3/Timer.3.gz pic:@m???V:140: fatal error: output error
  • usr/share/man/man3/TracePixel.3.gz pic:@?'uCV:81: fatal error: output error
  • usr/share/man/man3/TracePixel.3.gz pic:@??`tU:81: fatal error: output error
  • usr/share/man/man3/Translate.3.gz pic:@?$?)V:101: fatal error: output error
  • usr/share/man/man3/Translate.3.gz pic:@??i1V:101: fatal error: output error
  • usr/share/man/man3/Transpose.3.gz pic:@=|??U:100: fatal error: output error
  • usr/share/man/man3/VolPack.3.gz pic:@-???U:260: fatal error: output error
  • usr/share/man/man3/VolumeNormals.3.gz pic:@-??NV:142: fatal error: output error
  • usr/share/man/man3/VolumeSize.3.gz pic:@=??@V:85: fatal error: output error
  • usr/share/man/man3/VolumeSize.3.gz pic:@}???U:85: fatal error: output error
  • usr/share/man/man3/VoxelField.3.gz pic:@????U:173: fatal error: output error
  • usr/share/man/man3/VoxelField.3.gz pic:@?X.>V:173: fatal error: output error
  • usr/share/man/man3/VoxelSize.3.gz : No such file or directory
  • usr/share/man/man3/VoxelSize.3.gz pic:@??/?U:126: fatal error: output error
  • usr/share/man/man3/Window.3.gz pic:@?7??V:144: fatal error: output error
  • usr/share/man/man3/Window.3.gz pic:@??_`U:144: fatal error: output error
  • usr/share/man/man3/WindowPHIGS.3.gz No such file or directory
  • usr/share/man/man3/WindowPHIGS.3.gz pic:@???.V:154: fatal error: output error

wise-data

• W executable-not-elf-or-script
  • usr/share/doc/wise-data/examples/testman.pl

• W obsolete-url-in-packaging
  • debian/control http://search.cpan.org/dist/WordNet-QueryData/
• W patch-file-present-but-not-mentioned-in-series
  • 52_wordnet3.0_lib_search_c_memory_patch
• W spelling-error-in-patch-description
  • debian/patches/20_src_wnb.patch pathes paths
  • debian/patches/41_doc_man_fix_names.patch formating formatting
  • debian/patches/50_CVE-2008-2149_buffer_overflows.patch occurences occurrences

dict-wn

• W command-with-path-in-maintainer-script
  • postinst:9 /usr/sbin/dictdconfig
  • postrm:7 /usr/sbin/dictdconfig

wordnet-base

• W manpage-has-errors-from-man
  • usr/share/man/man5/lexnames.5WN.gz file '<standard input>', around line 55:

wordnet-dev

• W manpage-has-errors-from-man
  • usr/share/man/man3/wnsearch.3WN.gz file '<standard input>', around line 248: [amd64, i386]

libmdc-dev

• W manpage-has-errors-from-man
  • usr/share/man/man3/medcon.3.gz file '<standard input>', around line 639: [amd64, i386]
  • usr/share/man/man4/m-acr.4.gz file '<standard input>', around line 480: [amd64, i386]
  • usr/share/man/man4/m-anlz.4.gz file '<standard input>', around line 171: [amd64, i386]
  • usr/share/man/man4/m-ecat.4.gz file '<standard input>', around line 289: [amd64, i386]
  • usr/share/man/man4/m-gif.4.gz file '<standard input>', around line 385: [amd64, i386]
  • usr/share/man/man4/m-intf.4.gz file '<standard input>', around line 1092: [amd64, i386]
  • usr/share/man/man4/m-inw.4.gz file '<standard input>', around line 146: [amd64, i386]

medcon

• W manpage-has-errors-from-man
  • usr/share/man/man1/medcon.1.gz file '<standard input>', around line 33: [amd64, i386]

xmedcon

• W manpage-has-errors-from-man
  • usr/share/man/man1/xmedcon.1.gz file '<standard input>', around line 69:

xrdp

• E library-not-linked-against-libc
  • usr/lib/i386-linux-gnu/xrdp/libmc.so