Andreas Tille

At the time of the last Lintian run, the following possible problems were found in packages maintained by Andreas Tille <tille@debian.org>, listed by source package. See also the full report, including info, experimental and overridden tags. Also see their QA overview.

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/abacas.git
  • vcs-git https://anonscm.debian.org/git/debian-med/abacas.git

abacas

• W manpage-has-errors-from-man
  • usr/share/man/man1/abacas.1.gz 20: warning [p 1, 3.0i, div `an-div', 0.0i]: cannot adjust line

• W debhelper-tools-from-autotools-dev-are-deprecated
  • dh ... --with autotools_dev (line 14)
• E source-is-missing
  • doc/install_notes/install_v4.4.html line length is 903 characters (>512)
  • doc/install_notes/install_v4.4.html line length is 903 characters (>512)
  • doc/install_notes/install_v4.5.html line length is 903 characters (>512)
  • doc/install_notes/install_v4.5.html line length is 903 characters (>512)
  • doc/install_notes/install_v4.6.html line length is 903 characters (>512)
  • doc/install_notes/install_v4.6.html line length is 903 characters (>512)
  • doc/install_notes/install_v4.7.html line length is 903 characters (>512)
  • doc/install_notes/install_v4.7.html line length is 903 characters (>512)
  • doc/install_notes/install_v5.0.html line length is 903 characters (>512)
  • doc/install_notes/install_v5.1.html line length is 903 characters (>512)
  • doc/install_notes/install_v5.2.html line length is 903 characters (>512)
  • doc/install_notes/install_v5.3.html line length is 903 characters (>512)
  • doc/install_notes/install_v5.4.html line length is 903 characters (>512)
  • doc/install_notes/install_v5.5.html line length is 903 characters (>512)
  • doc/install_notes/install_v5.6.html line length is 903 characters (>512)
  • doc/install_notes/install_v5.7.html line length is 903 characters (>512)
  • doc/install_notes/install_v5.8.html line length is 903 characters (>512)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/viewvc/debichem/unstable/abinit/
  • vcs-svn svn://anonscm.debian.org/debichem/unstable/abinit/

abinit

• W binary-without-manpage
  • usr/bin/aim
  • usr/bin/aim
  • usr/bin/anaddb
  • usr/bin/anaddb
  • usr/bin/band2eps
  • usr/bin/band2eps
  • usr/bin/bsepostproc
  • usr/bin/bsepostproc
  • usr/bin/conducti
  • usr/bin/conducti
  • usr/bin/cut3d
  • usr/bin/cut3d
  • usr/bin/fftprof
  • usr/bin/fftprof
  • usr/bin/fold2Bloch
  • usr/bin/fold2Bloch
  • usr/bin/ioprof
  • usr/bin/ioprof
  • usr/bin/lapackprof
  • usr/bin/lapackprof
  • usr/bin/macroave
  • usr/bin/macroave
  • usr/bin/mrgddb
  • usr/bin/mrgddb
  • usr/bin/mrgdv
  • usr/bin/mrgdv
  • usr/bin/mrggkk
  • usr/bin/mrggkk
  • usr/bin/mrgscr
  • usr/bin/mrgscr
  • usr/bin/optic
  • usr/bin/optic
  • usr/bin/ujdet
  • usr/bin/ujdet
  • usr/bin/vdw_kernelgen
  • usr/bin/vdw_kernelgen

abinit-doc

• W jar-contains-source
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/Dumper.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/DumperOptions.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/JavaBeanDumper.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/JavaBeanLoader.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/Loader.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/LoaderOptions.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/TypeDescription.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/Yaml.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/composer/Composer.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/composer/ComposerException.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/constructor/AbstractConstruct.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/constructor/BaseConstructor.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/constructor/Construct.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/constructor/Constructor.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/constructor/ConstructorException.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/constructor/CustomClassLoaderConstructor.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/constructor/SafeConstructor.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/emitter/Emitable.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/emitter/Emitter.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/emitter/EmitterException.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/emitter/EmitterState.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/emitter/ScalarAnalysis.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/error/Mark.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/error/MarkedYAMLException.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/error/YAMLException.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/AliasEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/CollectionEndEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/CollectionStartEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/DocumentEndEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/DocumentStartEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/Event.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/ImplicitTuple.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/MappingEndEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/MappingStartEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/NodeEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/ScalarEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/SequenceEndEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/SequenceStartEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/StreamEndEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/events/StreamStartEvent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/extensions/compactnotation/CompactConstructor.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/extensions/compactnotation/CompactData.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/extensions/compactnotation/PackageCompactConstructor.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/external/biz/base64Coder/Base64Coder.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/external/com/google/gdata/util/common/base/Escaper.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/external/com/google/gdata/util/common/base/PercentEscaper.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/external/com/google/gdata/util/common/base/UnicodeEscaper.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/introspector/BeanAccess.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/introspector/FieldProperty.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/introspector/GenericProperty.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/introspector/MethodProperty.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/introspector/MissingProperty.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/introspector/Property.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/introspector/PropertyUtils.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/nodes/AnchorNode.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/nodes/CollectionNode.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/nodes/MappingNode.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/nodes/Node.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/nodes/NodeId.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/nodes/NodeTuple.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/nodes/ScalarNode.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/nodes/SequenceNode.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/nodes/Tag.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/parser/Parser.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/parser/ParserException.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/parser/ParserImpl.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/parser/Production.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/parser/VersionTagsTuple.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/reader/ReaderException.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/reader/StreamReader.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/reader/UnicodeReader.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/representer/BaseRepresenter.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/representer/Represent.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/representer/Representer.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/representer/SafeRepresenter.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/resolver/Resolver.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/resolver/ResolverTuple.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/scanner/Constant.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/scanner/Scanner.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/scanner/ScannerException.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/scanner/ScannerImpl.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/scanner/SimpleKey.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/serializer/Serializer.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/serializer/SerializerException.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/AliasToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/AnchorToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/BlockEndToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/BlockEntryToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/BlockMappingStartToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/BlockSequenceStartToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/DirectiveToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/DocumentEndToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/DocumentStartToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/FlowEntryToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/FlowMappingEndToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/FlowMappingStartToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/FlowSequenceEndToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/FlowSequenceStartToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/KeyToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/ScalarToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/StreamEndToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/StreamStartToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/TagToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/TagTuple.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/Token.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/tokens/ValueToken.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/util/ArrayStack.java
  • usr/share/doc/abinit/html/input_variables/Abivars.jar org/yaml/snakeyaml/util/UriEncoder.java
• W privacy-breach-generic
  • usr/share/doc/abinit/html/tutorial/lesson_tddft.html [<img src="http://dcm.ujf-grenoble.fr/dcm-site/trombinoscope/ccasma.jpg" align="center" />] (http://dcm.ujf-grenoble.fr/dcm-site/trombinoscope/ccasma.jpg)

abyss

• W binary-without-manpage
  • usr/bin/DistanceEst
  • usr/bin/DistanceEst
  • usr/bin/abyss-fixmate
  • usr/bin/abyss-fixmate
• E wrong-path-for-interpreter
  • usr/lib/abyss/abyss-fatoagp (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/abyss/abyss-fatoagp (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/abyss/abyss-samtoafg (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/abyss/abyss-samtoafg (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/acedb.git
  • vcs-git https://anonscm.debian.org/git/debian-med/acedb.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/adapterremoval.git
  • vcs-git https://anonscm.debian.org/git/debian-med/adapterremoval.git

adapterremoval

• W manpage-has-errors-from-man
  • usr/share/man/man1/AdapterRemoval.1.gz 232: warning [p 4, 4.3i]: can't break line
  • usr/share/man/man1/AdapterRemoval.1.gz 232: warning [p 4, 4.3i]: can't break line
• W privacy-breach-generic
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/adun.app.git
  • vcs-git https://anonscm.debian.org/git/debian-med/adun.app.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/alien-hunter.git
  • vcs-git https://anonscm.debian.org/git/debian-med/alien-hunter.git

alien-hunter

• W package-installs-java-bytecode
  • usr/share/alien_hunter/ChangepointLeft$1.class
  • usr/share/alien_hunter/ChangepointLeft.class
  • usr/share/alien_hunter/ChangepointRight$1.class
  • usr/share/alien_hunter/ChangepointRight.class

• W configure-generated-file-in-source
  • web/src/cgi.tcl-1.10/config.log
  • web/src/cgi.tcl-1.10/config.status
• E missing-notice-file-for-apache-license
  • imap/NOTICE
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/collab-maint/alpine.git
  • vcs-git https://anonscm.debian.org/git/collab-maint/alpine.git

alpine (2.21+dfsg1-1+b1; main)

• W mail-transport-agent-dependency-does-not-specify-default-mta
  • suggests: aspell, mail-transport-agent | exim4
  • suggests: aspell, mail-transport-agent | exim4
• E missing-depends-on-sensible-utils
  • usr/bin/alpine
  • usr/bin/alpine

alpine-pico (2.21+dfsg1-1+b1; main)

• W manpage-has-errors-from-man
  • usr/share/man/man1/pico.alpine.1.gz 178: warning: numeric expression expected (got `n')
  • usr/share/man/man1/pico.alpine.1.gz 178: warning: numeric expression expected (got `n')

• W obsolete-url-in-packaging
  • debian/control http://code.google.com/p/ampliconnoise/
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ampliconnoise.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ampliconnoise.git

ampliconnoise-dbgsym (1.29-7+b1; main)

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/5b/baf470ff4021df694fe31848569e906309c527.debug
  • usr/lib/debug/.build-id/df/88df37a9849ebcf2acbd80bbc788aa94d7209f.debug

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/anfo.git
  • vcs-git https://anonscm.debian.org/git/debian-med/anfo.git

arb-common

• W duplicate-changelog-files
  • usr/share/doc/arb-common/arb_CHANGES.txt.gz usr/share/doc/arb-common/changelog.gz usr/share/doc/arb/arb_CHANGES.txt.gz

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/autodocksuite.git
  • vcs-git https://anonscm.debian.org/git/debian-med/autodocksuite.git

• W changelog-should-mention-nmu
• W debian-rules-should-not-set-CFLAGS-from-noopt
• W python-foo-but-no-python3-foo
  • python-ball
  • python-ballview
• W source-nmu-has-incorrect-version-number
  • 1.4.3~beta1-3
• W spelling-error-in-patch-description
  • debian/patches/fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch comparision comparison
  • debian/patches/link_against_x11.patch explicitely explicitly
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ball.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ball.git

ballview (1.4.3~beta1-3+b1; main)

• W desktop-mime-but-no-exec-code
  • usr/share/applications/ballview.desktop

libball1.4 (1.4.3~beta1-3+b1; main)

• W dev-pkg-without-shlib-symlink
  • usr/lib/libBALL.so.1.4 usr/lib/libBALL.so

libballview1.4 (1.4.3~beta1-3+b1; main)

• W dev-pkg-without-shlib-symlink
  • usr/lib/libVIEW.so.1.4 usr/lib/libVIEW.so

• W debian-rules-should-not-set-CFLAGS-from-noopt
• W python-foo-but-no-python3-foo
  • python-ball
  • python-ballview
• W spelling-error-in-patch-description
  • debian/patches/fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch comparision comparison
  • debian/patches/link_against_x11.patch explicitely explicitly
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ball.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ball.git

ballview

• W desktop-mime-but-no-exec-code
  • usr/share/applications/ballview.desktop
• W spelling-error-in-changelog
  • upsteam upstream

libball1.4

• W dev-pkg-without-shlib-symlink
  • usr/lib/libBALL.so.1.4 usr/lib/libBALL.so
• W spelling-error-in-changelog
  • upsteam upstream

libball1.4-data

• W spelling-error-in-changelog
  • upsteam upstream

libball1.4-dev

• W spelling-error-in-changelog
  • upsteam upstream

libball1.4-doc

• W spelling-error-in-changelog
  • upsteam upstream

libballview1.4

• W dev-pkg-without-shlib-symlink
  • usr/lib/libVIEW.so.1.4 usr/lib/libVIEW.so
• W spelling-error-in-changelog
  • upsteam upstream

libballview1.4-dev

• W spelling-error-in-changelog
  • upsteam upstream

python-ball

• W spelling-error-in-changelog
  • upsteam upstream

python-ballview

• W spelling-error-in-changelog
  • upsteam upstream

• W debian-rules-uses-unnecessary-dh-argument
  • dh ... --parallel (line 10)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bamtools.git
  • vcs-git https://anonscm.debian.org/git/debian-med/bamtools.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/beads.git
  • vcs-git https://anonscm.debian.org/git/debian-med/beads.git

beads

• W binary-without-manpage
  • usr/bin/qtbeads
  • usr/bin/qtbeads

beast-mcmc

• W binary-without-manpage
  • usr/bin/beast-tracer
  • usr/bin/loganalyser
  • usr/bin/logcombiner
  • usr/bin/treeannotator
  • usr/bin/treestat

libnucleotidelikelihoodcore0-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/80/b24c2b87bfd56a5b0dc5540627bbf59ceb1beb.debug
  • usr/lib/debug/.build-id/a5/6d36e425b496b7bf79ab85f9d6c96cb21e0c90.debug

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/beast2-mcmc.git
  • vcs-git https://anonscm.debian.org/git/debian-med/beast2-mcmc.git

• W dep5-copyright-license-name-not-unique
  • (paragraph at line 100)
  • mit (paragraph at line 28)
• W dep5-file-paragraph-references-header-paragraph
  • gpl-2 (paragraph at line 22)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bedtools.git
  • vcs-git https://anonscm.debian.org/git/debian-med/bedtools.git

bedtools

• W binary-without-manpage
  • usr/bin/annotateBed
  • usr/bin/bamToBed
  • usr/bin/bamToFastq
  • usr/bin/bed12ToBed6
  • usr/bin/bedToBam
  • usr/bin/bedToIgv
  • usr/bin/bedpeToBam
  • usr/bin/bedtools
  • usr/bin/closestBed
  • usr/bin/clusterBed
  • usr/bin/complementBed
  • usr/bin/coverageBed
  • usr/bin/expandCols
  • usr/bin/fastaFromBed
  • usr/bin/flankBed
  • usr/bin/genomeCoverageBed
  • usr/bin/getOverlap
  • usr/bin/groupBy
  • usr/bin/intersectBed
  • usr/bin/linksBed
  • usr/bin/mapBed
  • usr/bin/maskFastaFromBed
  • usr/bin/mergeBed
  • usr/bin/multiBamCov
  • usr/bin/multiIntersectBed
  • usr/bin/nucBed
  • usr/bin/pairToBed
  • usr/bin/pairToPair
  • usr/bin/randomBed
  • usr/bin/shiftBed
  • usr/bin/shuffleBed
  • usr/bin/slopBed
  • usr/bin/sortBed
  • usr/bin/subtractBed
  • usr/bin/tagBam
  • usr/bin/unionBedGraphs
  • usr/bin/windowBed
  • usr/bin/windowMaker

bedtools-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/16/d99793d5cd655de9bbcb393f482abb96d0a419.debug

bedtools-test

• W executable-not-elf-or-script
  • usr/share/bedtools/data/knownGene.hg18.chr21.bed
• W script-not-executable
  • usr/share/bedtools/test/bamtobed/test-bamtobed.sh
  • usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
  • usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
  • usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/closest/test-closest.sh
  • usr/share/bedtools/test/cluster/test-cluster.sh
  • usr/share/bedtools/test/complement/test-complement.sh
  • usr/share/bedtools/test/coverage/test-coverage.sh
  • usr/share/bedtools/test/expand/test-expand.sh
  • usr/share/bedtools/test/fisher/cmp.sh
  • usr/share/bedtools/test/fisher/get.sh
  • usr/share/bedtools/test/fisher/shuf.sh
  • usr/share/bedtools/test/fisher/test-fisher.sh
  • usr/share/bedtools/test/flank/test-flank.sh
  • usr/share/bedtools/test/general/test-general.sh
  • usr/share/bedtools/test/getfasta/test-getfasta.sh
  • usr/share/bedtools/test/groupBy/test-groupby.sh
  • usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
  • usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/intersect/test-intersect.sh
  • usr/share/bedtools/test/jaccard/test-jaccard.sh
  • usr/share/bedtools/test/makewindows/test-makewindows.sh
  • usr/share/bedtools/test/map/test-map.sh
  • usr/share/bedtools/test/merge/test-merge.sh
  • usr/share/bedtools/test/multicov/test-multicov.sh
  • usr/share/bedtools/test/reldist/test-reldist.sh
  • usr/share/bedtools/test/sample/test-sample.sh
  • usr/share/bedtools/test/shift/test-shift.sh
  • usr/share/bedtools/test/shuffle/test-shuffle.sh
  • usr/share/bedtools/test/slop/test-slop.sh
  • usr/share/bedtools/test/sort/test-sort.sh
  • usr/share/bedtools/test/spacing/test-spacing.sh
  • usr/share/bedtools/test/split/test-split.sh
  • usr/share/bedtools/test/subtract/test-subtract.sh
  • usr/share/bedtools/test/test.sh

bedtools

• W binary-without-manpage
  • usr/bin/annotateBed
  • usr/bin/bamToBed
  • usr/bin/bamToFastq
  • usr/bin/bed12ToBed6
  • usr/bin/bedToBam
  • usr/bin/bedToIgv
  • usr/bin/bedpeToBam
  • usr/bin/bedtools
  • usr/bin/closestBed
  • usr/bin/clusterBed
  • usr/bin/complementBed
  • usr/bin/coverageBed
  • usr/bin/expandCols
  • usr/bin/fastaFromBed
  • usr/bin/flankBed
  • usr/bin/genomeCoverageBed
  • usr/bin/getOverlap
  • usr/bin/groupBy
  • usr/bin/intersectBed
  • usr/bin/linksBed
  • usr/bin/mapBed
  • usr/bin/maskFastaFromBed
  • usr/bin/mergeBed
  • usr/bin/multiBamCov
  • usr/bin/multiIntersectBed
  • usr/bin/nucBed
  • usr/bin/pairToBed
  • usr/bin/pairToPair
  • usr/bin/randomBed
  • usr/bin/shiftBed
  • usr/bin/shuffleBed
  • usr/bin/slopBed
  • usr/bin/sortBed
  • usr/bin/subtractBed
  • usr/bin/tagBam
  • usr/bin/unionBedGraphs
  • usr/bin/windowBed
  • usr/bin/windowMaker

bedtools-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/80/ff25dec4eb06f32356c685e18a4efc19d49099.debug

bedtools-test

• W executable-not-elf-or-script
  • usr/share/bedtools/data/knownGene.hg18.chr21.bed
  • usr/share/bedtools/test/sort/b.bed
• W script-not-executable
  • usr/share/bedtools/test/bamtobed/test-bamtobed.sh
  • usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
  • usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
  • usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/closest/test-closest.sh
  • usr/share/bedtools/test/cluster/test-cluster.sh
  • usr/share/bedtools/test/complement/test-complement.sh
  • usr/share/bedtools/test/expand/test-expand.sh
  • usr/share/bedtools/test/fisher/cmp.sh
  • usr/share/bedtools/test/fisher/get.sh
  • usr/share/bedtools/test/fisher/shuf.sh
  • usr/share/bedtools/test/fisher/test-fisher.sh
  • usr/share/bedtools/test/flank/test-flank.sh
  • usr/share/bedtools/test/general/test-general.sh
  • usr/share/bedtools/test/getfasta/test-getfasta.sh
  • usr/share/bedtools/test/groupby/test-groupby.sh
  • usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
  • usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/intersect/test-intersect.sh
  • usr/share/bedtools/test/jaccard/test-jaccard.sh
  • usr/share/bedtools/test/makewindows/test-makewindows.sh
  • usr/share/bedtools/test/map/test-map.sh
  • usr/share/bedtools/test/merge/test-merge.sh
  • usr/share/bedtools/test/multicov/test-multicov.sh
  • usr/share/bedtools/test/negativecontrol/test-negativecontrol.sh
  • usr/share/bedtools/test/reldist/test-reldist.sh
  • usr/share/bedtools/test/sample/test-sample.sh
  • usr/share/bedtools/test/shift/test-shift.sh
  • usr/share/bedtools/test/shuffle/test-shuffle.sh
  • usr/share/bedtools/test/slop/test-slop.sh
  • usr/share/bedtools/test/sort/test-sort.sh
  • usr/share/bedtools/test/spacing/test-spacing.sh
  • usr/share/bedtools/test/split/test-split.sh
  • usr/share/bedtools/test/subtract/test-subtract.sh

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bio-tradis.git
  • vcs-git https://anonscm.debian.org/git/debian-med/bio-tradis.git

bio-tradis

• E wrong-path-for-interpreter
  • usr/bin/add_tradis_tags (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/bacteria_tradis (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/check_tradis_tags (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/combine_tradis_plots (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/filter_tradis_tags (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/remove_tradis_tags (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/tradis_gene_insert_sites (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/tradis_merge_plots (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/tradis_plot (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/biococoa.git
  • vcs-git https://anonscm.debian.org/git/debian-med/biococoa.git

libbiococoa2-dbgsym (2.2.2-3+b1; main)

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/af/68f7db54523d0fb047772bdbb1255d77559e43.debug
  • usr/lib/debug/.build-id/d6/625b4946e0905e34b4bfa82e9780db7c7b2409.debug

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/biojava-live.git
  • vcs-git https://anonscm.debian.org/git/debian-med/biojava-live.git

• W obsolete-url-in-packaging
  • debian/copyright http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.923.tar.gz
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-med/bioperl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/bioperl.git

bioperl

• W binary-without-manpage
  • usr/bin/bp_das_server
  • usr/bin/bp_seqfeature_delete
  • usr/bin/bp_seqfeature_gff3
• E wrong-path-for-interpreter
  • usr/bin/bp_find-blast-matches (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/bp_seqcut (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/bp_seqfeature_gff3 (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/bp_seqpart (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/bioperl/examples/root/exceptions3.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/bioperl/examples/root/exceptions4.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/bioperl/examples/searchio/custom_writer.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/bioperl/examples/searchio/hspwriter.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/bioperl/examples/searchio/rawwriter.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/bioperl/examples/tools/seq_pattern.pl (#!/usr/bin/env != /usr/bin/perl)

libbio-perl-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Root::Build.3pm.gz
  • usr/share/man/man3/Bio::Root::Exception.3pm.gz
  • usr/share/man/man3/Bio::Root::IO.3pm.gz
  • usr/share/man/man3/Bio::Root::Root.3pm.gz
  • usr/share/man/man3/Bio::Root::RootI.3pm.gz
  • usr/share/man/man3/Bio::Root::Storable.3pm.gz
  • usr/share/man/man3/Bio::Root::Test.3pm.gz
  • usr/share/man/man3/Bio::Root::Utilities.3pm.gz
  • usr/share/man/man3/Bio::Root::Version.3pm.gz
  • usr/share/man/man3/Bio::SearchIO::hmmer3.3pm.gz
  • usr/share/man/man3/Bio::Tools::SeqPattern::Backtranslate.3pm.gz
  • usr/share/man/man3/Bio::TreeIO::NewickParser.3pm.gz
  • usr/share/man/man3/Bio::TreeIO::newick.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/Bio::SeqIO::bsml.3pm.gz 357: warning [p 4, 0.2i]: can't break line

• W changelog-should-mention-nmu
• W obsolete-url-in-packaging
  • debian/control http://search.cpan.org/dist/BioPerl-Run/
• W patch-file-present-but-not-mentioned-in-series
  • adjust_bowtie_tests.patch
  • skip_tests_for_samtools.patch
• W source-nmu-has-incorrect-version-number
  • 1.7.2-3
• W spelling-error-in-patch-description
  • debian/patches/skip_tests_for_phyml.patch completed completed (duplicate word) completed
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-med/bioperl-run.git
  • vcs-git https://anonscm.debian.org/git/debian-med/bioperl-run.git

bioperl-run

• W script-with-language-extension
  • usr/bin/bp_bioperl_application_installer.pl
  • usr/bin/bp_multi_hmmsearch.pl
  • usr/bin/bp_panalysis.pl
  • usr/bin/bp_papplmaker.pl
  • usr/bin/bp_run_neighbor.pl
  • usr/bin/bp_run_protdist.pl

libbio-perl-run-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::FastTree.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Raxml.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Primate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Prints.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Profile.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Signalp.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::TribeMCL.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Vista.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::DB::SoapEUtilities::Result.3pm.gz:415
  • usr/share/man/man3/Bio::Tools::Run::ERPIN.3pm.gz:317

• W useless-autoreconf-build-depends
  • autotools-dev
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/biosquid.git
  • vcs-git https://anonscm.debian.org/git/debian-med/biosquid.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bitseq.git
  • vcs-git https://anonscm.debian.org/git/debian-med/bitseq.git

bitseq

• W binary-without-manpage
  • usr/bin/biocUpdate
  • usr/bin/biocUpdate
  • usr/bin/checkTR
  • usr/bin/checkTR

blends-common

• E missing-depends-on-sensible-utils
  • usr/share/menu/blend-menu

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/blimps.git
  • vcs-git https://anonscm.debian.org/git/debian-med/blimps.git

blimps-utils

• W privacy-breach-generic
  • usr/share/doc/blimps-utils/html/thanks.html [<img src="http://www.nigms.nih.gov/nigms.nih.gov/images/banner_nigms.gif" height="45" width="300">] (http://www.nigms.nih.gov/nigms.nih.gov/images/banner_nigms.gif)
• W zero-byte-file-in-doc-directory
  • usr/share/doc/blimps-utils/html/bin/marks
  • usr/share/doc/blimps-utils/html/bin/wave

blimps-utils-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/b3/1fe833082cf677db5fb84acfdb8765e4ad9dcf.debug

libblimps3-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/d7/e047413df8095339461122e593b24b553cf656.debug

• W spelling-error-in-patch-description
  • debian/patches/gcc-64bit.patch unfortunatly unfortunately
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/viewvc/debian-med/trunk/packages/bowtie/trunk/
  • vcs-svn svn://anonscm.debian.org/debian-med/trunk/packages/bowtie/trunk/

• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.2.0)
• W patch-file-present-but-not-mentioned-in-series
  • fix_makefile_machine_detection.patch
• W unnecessary-testsuite-autopkgtest-field
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bowtie2.git
  • vcs-git git://anonscm.debian.org/debian-med/bowtie2.git

bowtie2-examples

• E wrong-path-for-interpreter
  • usr/share/doc/bowtie2/examples/scripts/debug_wrapper.pl (#!/usr/bin/env != /usr/bin/perl)

bowtie2

• W privacy-breach-generic
  • usr/share/doc/bowtie2/manual.html [<script src="//cdnjs.cloudflare.com/ajax/libs/html5shiv/3.7.3/html5shiv-printshiv.min.js">] (//cdnjs.cloudflare.com/ajax/libs/html5shiv/3.7.3/html5shiv-printshiv.min.js)
• E wrong-path-for-interpreter
  • usr/bin/bowtie2 (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/boxshade.git
  • vcs-git https://anonscm.debian.org/git/debian-med/boxshade.git

brig

• W bad-jar-name
  • usr/share/java/BRIG-0.95.jar
  • usr/share/java/BRIG-0.95.jar
• W binary-without-manpage
  • usr/bin/brig
  • usr/bin/brig

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bwa.git
  • vcs-git https://anonscm.debian.org/git/debian-med/bwa.git

bwa

• E wrong-path-for-interpreter
  • usr/share/bwa/qualfa2fq.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/bwa/xa2multi.pl (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/cd-hit.git
  • vcs-git https://anonscm.debian.org/git/debian-med/cd-hit.git

cd-hit

• W binary-without-manpage
  • usr/bin/cdhit
  • usr/bin/cdhit
  • usr/bin/cdhit-2d
  • usr/bin/cdhit-2d
  • usr/bin/cdhit-454
  • usr/bin/cdhit-454
  • usr/bin/cdhit-est
  • usr/bin/cdhit-est
  • usr/bin/cdhit-est-2d
  • usr/bin/cdhit-est-2d
  • usr/bin/clstr2tree
  • usr/bin/clstr2tree
  • usr/bin/clstr_merge
  • usr/bin/clstr_merge
  • usr/bin/clstr_merge_noorder
  • usr/bin/clstr_merge_noorder
  • usr/bin/clstr_reduce
  • usr/bin/clstr_reduce
  • usr/bin/clstr_renumber
  • usr/bin/clstr_renumber
  • usr/bin/clstr_rev
  • usr/bin/clstr_rev
  • usr/bin/clstr_sort_by
  • usr/bin/clstr_sort_by
  • usr/bin/clstr_sort_prot_by
  • usr/bin/clstr_sort_prot_by
  • usr/bin/make_multi_seq
  • usr/bin/make_multi_seq

• W spelling-error-in-patch-description
  • debian/patches/workaround-lintian-false-positive gramatically grammatically
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/cdbfasta.git
  • vcs-git https://anonscm.debian.org/git/debian-med/cdbfasta.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/centrifuge.git
  • vcs-git https://anonscm.debian.org/git/debian-med/centrifuge.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/centrifuge.git
  • vcs-git https://anonscm.debian.org/git/debian-med/centrifuge.git

centrifuge

• W script-not-executable
  • usr/lib/centrifuge/share/centrifuge/doc/strip_markdown.pl
• E wrong-path-for-interpreter
  • usr/lib/centrifuge/centrifuge (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-BuildSharedSequence.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-RemoveEmptySequence.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-RemoveN.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-compress.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-kreport (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-sort-nt.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/centrifuge/share/centrifuge/doc/strip_markdown.pl (#!/usr/bin/env != /usr/bin/perl)
• W zero-byte-file-in-doc-directory
  • usr/share/doc/centrifuge/html/manual.inc.html

• W build-depends-on-python-sphinx-only
• W python-foo-but-no-python3-foo
  • python-cfflib

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/cgview.git
  • vcs-git https://anonscm.debian.org/git/debian-med/cgview.git

• W patch-file-present-but-not-mentioned-in-series
  • charls_add_cmake_install_target.patch
  • charls_add_sharedlib_soname.patch
  • charls_fix_tests.patch
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/charls.git
  • vcs-git https://anonscm.debian.org/git/debian-med/charls.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-science/packages/cimg.git/
  • vcs-git https://anonscm.debian.org/git/debian-science/packages/cimg.git

cimg-doc

• W privacy-breach-generic
  • usr/share/doc/cimg-dev/html/annotated.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/classes.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_0x7e.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_b.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_c.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_d.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_e.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_f.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_func.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_func_0x7e.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_func_b.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_func_c.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_func_d.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_func_e.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_func_f.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_func_g.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_func_h.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/functions_func_i.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
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  • usr/share/doc/cimg-dev/html/img/video_mandelbrot.html [<embed src="http://www.youtube.com/v/ir80v5r9ajm?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ir80v5r9ajm?version=3)
  • usr/share/doc/cimg-dev/html/img/video_menu.html [<embed src="http://www.youtube.com/v/t0tjzmytisg?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/t0tjzmytisg?version=3)
  • usr/share/doc/cimg-dev/html/img/video_metaballs.html [<embed src="http://www.youtube.com/v/-s_r76oxzyy?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/-s_r76oxzyy?version=3)
  • usr/share/doc/cimg-dev/html/img/video_minipaint.html [<embed src="http://www.youtube.com/v/4hbisksvzki?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/4hbisksvzki?version=3)
  • usr/share/doc/cimg-dev/html/img/video_plasma.html [<embed src="http://www.youtube.com/v/na8hcaykbfo?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/na8hcaykbfo?version=3)
  • usr/share/doc/cimg-dev/html/img/video_reflection.html [<embed src="http://www.youtube.com/v/5wqgkejdrcw?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/5wqgkejdrcw?version=3)
  • usr/share/doc/cimg-dev/html/img/video_shadebobs.html [<embed src="http://www.youtube.com/v/q91cyn6x8ly?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/q91cyn6x8ly?version=3)
  • usr/share/doc/cimg-dev/html/img/video_tetris.html [<embed src="http://www.youtube.com/v/iksy2kceh38?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/iksy2kceh38?version=3)
  • usr/share/doc/cimg-dev/html/img/video_waves.html [<embed src="http://www.youtube.com/v/kne-rxjlddm?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/kne-rxjlddm?version=3)
  • usr/share/doc/cimg-dev/html/index.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/modules.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/namespacecimg__library.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/namespacecimg__library_1_1cimg.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/namespacemembers.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/namespacemembers_func.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/namespacemembers_vars.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/namespaces.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/structcimg__library_1_1CImg-members.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/structcimg__library_1_1CImg.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/structcimg__library_1_1CImgDisplay-members.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/structcimg__library_1_1CImgDisplay.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/structcimg__library_1_1CImgException-members.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/structcimg__library_1_1CImgException.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/structcimg__library_1_1CImgList-members.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)
  • usr/share/doc/cimg-dev/html/structcimg__library_1_1CImgList.html [<img style="position: absolute; top: 0; left: 0; border: 0;" src="https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67" alt="fork me on github" data-canonical-src="https://s3.amazonaws.com/github/ribbons/forkme_left_red_aa0000.png">] (https://camo.githubusercontent.com/82b228a3648bf44fc1163ef44c62fcc60081495e/68747470733a2f2f73332e616d617a6f6e6177732e636f6d2f6769746875622f726962626f6e732f666f726b6d655f6c6566745f7265645f6161303030302e706e67)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/circos.git
  • vcs-git https://anonscm.debian.org/git/debian-med/circos.git

circos

• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/circos.1.gz
• E wrong-path-for-interpreter
  • etc/circos/makehuesteps (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/circos (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/circos-tools.git
  • vcs-git https://anonscm.debian.org/git/debian-med/circos-tools.git

circos-tools

• E wrong-path-for-interpreter
  • usr/share/circos/tools/binlinks/bin/binlinks (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/binlinks/data/toplinks (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/bundlelinks/bin/bundlelinks (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/calcdatarange/bin/calcdatarange (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/categoryviewer/bin/parse-category (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/categoryviewer/data/makedata (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/clustal2link/bin/clustal2link (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/colorinterpolate/bin/colorinterpolate (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/connectogram/parsemap (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/convertlinks/bin/convertlinks (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/filterlinks/bin/filterlinks (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/maketutorialimages/bin/make_tutorial_images (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/matrix/matrix (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/matrix/unmatrix (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/orderchr/bin/orderchr (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/randomdata/bin/randomdata (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/randomlinks/bin/randomlinks (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/resample/bin/resample (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/tableviewer/bin/make-conf (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/tableviewer/bin/make-table (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/circos/tools/tableviewer/bin/parse-table (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/clearcut.git
  • vcs-git https://anonscm.debian.org/git/debian-med/clearcut.git

clearcut-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/27/39b8faf2cf1b2e3f92a3d5bef9516958dc4b91.debug
  • usr/lib/debug/.build-id/61/a68f85b73b4ef89dfe30a0766b9df0a4099782.debug

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/clonalframe.git
  • vcs-git https://anonscm.debian.org/git/debian-med/clonalframe.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/clonalframeml.git
  • vcs-git https://anonscm.debian.org/git/debian-med/clonalframeml.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/clonalorigin.git
  • vcs-git https://anonscm.debian.org/git/debian-med/clonalorigin.git

clonalorigin

• W binary-without-manpage
  • usr/bin/blocksplit
  • usr/bin/blocksplit
  • usr/bin/computeMedians
  • usr/bin/computeMedians
  • usr/bin/makeMauveWargFile
  • usr/bin/makeMauveWargFile

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/clustalx.git
  • vcs-git https://anonscm.debian.org/git/debian-med/clustalx.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/cluster3.git
  • vcs-git https://anonscm.debian.org/git/debian-med/cluster3.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/libcofoja-java.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/libcofoja-java.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/coils.git
  • vcs-git https://anonscm.debian.org/git/debian-med/coils.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/conservation-code.git
  • vcs-git https://anonscm.debian.org/git/debian-med/conservation-code.git

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 2.5.0+dfsg-2
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/crac.git
  • vcs-git https://anonscm.debian.org/git/debian-med/crac.git

crac

• W binary-without-manpage
  • usr/bin/crac-client
  • usr/bin/crac-index
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/crac.1.gz

python-cram

• W binary-without-manpage
  • usr/bin/cram

python3-cram

• W binary-without-manpage
  • usr/bin/cram3

ctsim-doc

• W privacy-breach-generic
  • usr/share/doc/ctsim-doc/examples/simulate.html [<link rel="stylesheet" href="http://www.ctsim.org/main.css" type="text/css">] (http://www.ctsim.org/main.css)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/cufflinks.git
  • vcs-git https://anonscm.debian.org/git/debian-med/cufflinks.git

• W ancient-python-version-field
  • x-python-version 2.5

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-med/dcmtk.git
  • vcs-git https://anonscm.debian.org/git/debian-med/dcmtk.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-med/dcmtk.git
  • vcs-git https://anonscm.debian.org/git/debian-med/dcmtk.git

• W patch-file-present-but-not-mentioned-in-series
  • 09_round_time.patch
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-med/dcmtk.git
  • vcs-git https://anonscm.debian.org/git/debian-med/dcmtk.git

dcmtk (3.6.2-3+b1; main)

• W maintainer-script-should-not-use-recursive-chown-or-chmod
  • postinst:20
  • postinst:20

• W patch-file-present-but-not-mentioned-in-series
  • 09_round_time.patch

dcmtk

• W maintainer-script-should-not-use-recursive-chown-or-chmod
  • postinst:20
  • postinst:20

• W no-op-testsuite

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debianjr/debian-junior.git/
  • vcs-git https://anonscm.debian.org/git/debianjr/debian-junior.git

junior-art

• W priority-extra-is-replaced-by-priority-optional

junior-config

• W priority-extra-is-replaced-by-priority-optional

junior-education

• W priority-extra-is-replaced-by-priority-optional

junior-games-adventure

• W priority-extra-is-replaced-by-priority-optional

junior-games-arcade

• W priority-extra-is-replaced-by-priority-optional

junior-games-card

• W priority-extra-is-replaced-by-priority-optional

junior-games-gl

• W priority-extra-is-replaced-by-priority-optional

junior-games-net

• W priority-extra-is-replaced-by-priority-optional

junior-games-puzzle

• W priority-extra-is-replaced-by-priority-optional

junior-games-sim

• W priority-extra-is-replaced-by-priority-optional

junior-games-text

• W priority-extra-is-replaced-by-priority-optional

junior-internet

• W priority-extra-is-replaced-by-priority-optional

junior-math

• W priority-extra-is-replaced-by-priority-optional

junior-programming

• W priority-extra-is-replaced-by-priority-optional

junior-sound

• W priority-extra-is-replaced-by-priority-optional

junior-system

• W priority-extra-is-replaced-by-priority-optional

junior-tasks

• W priority-extra-is-replaced-by-priority-optional

junior-toys

• W priority-extra-is-replaced-by-priority-optional

junior-typing

• W priority-extra-is-replaced-by-priority-optional

junior-video

• W priority-extra-is-replaced-by-priority-optional

junior-writing

• W priority-extra-is-replaced-by-priority-optional

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/blends/projects/med.git
  • vcs-git https://anonscm.debian.org/git/blends/projects/med.git

med-rehabilitation

• W priority-extra-is-replaced-by-priority-optional

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser http://svn.debian.org/wsvn/blends/projects/debichem/trunk/debichem/
  • vcs-svn svn://svn.debian.org/blends/projects/debichem/trunk/debichem/

debichem-analytical-biochemistry

• E description-is-pkg-name
  • DebiChem Analytical BioChemistry
• W possible-unindented-list-in-extended-description
• W priority-extra-is-replaced-by-priority-optional

debichem-cheminformatics

• E description-is-pkg-name
  • DebiChem Cheminformatics
• W priority-extra-is-replaced-by-priority-optional

debichem-crystallography

• E description-is-pkg-name
  • DebiChem crystallography
• W priority-extra-is-replaced-by-priority-optional

debichem-development

• W priority-extra-is-replaced-by-priority-optional

debichem-input-generation-output-processing

• W priority-extra-is-replaced-by-priority-optional

debichem-modelling

• W command-with-path-in-maintainer-script
  • prerm:20 /usr/sbin/blend-update-usermenus
• W priority-extra-is-replaced-by-priority-optional

debichem-molecular-abinitio

• W priority-extra-is-replaced-by-priority-optional

debichem-molecular-dynamics

• E description-is-pkg-name
  • DebiChem Molecular Dynamics
• W priority-extra-is-replaced-by-priority-optional

debichem-periodic-abinitio

• W priority-extra-is-replaced-by-priority-optional

debichem-semiempirical

• W priority-extra-is-replaced-by-priority-optional

debichem-tasks

• W priority-extra-is-replaced-by-priority-optional

debichem-view-edit-2d

• W priority-extra-is-replaced-by-priority-optional

debichem-visualisation

• W priority-extra-is-replaced-by-priority-optional

dh-r

• W binary-without-manpage
  • usr/bin/dh_vignette
  • usr/bin/prepare_missing_cran_package
• W script-not-executable
  • usr/share/dh-r/r-cran.mk
• E wrong-path-for-interpreter
  • usr/bin/dh-make-R (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/dh-update-R (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/dh-r/convert-to-dh-r (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/dialign.git
  • vcs-git https://anonscm.debian.org/git/debian-med/dialign.git

• W debian-rules-uses-unnecessary-dh-argument
  • dh ... --parallel (line 12)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/dialign-t.git
  • vcs-git https://anonscm.debian.org/git/debian-med/dialign-t.git

• W ancient-python-version-field
  • x-python-version 2.6
• W unnecessary-team-upload
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/dicompyler.git
  • vcs-git https://anonscm.debian.org/git/debian-med/dicompyler.git

• W patch-file-present-but-not-mentioned-in-series
  • fixbug694846.patch
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/dicomscope.git
  • vcs-git https://anonscm.debian.org/git/debian-med/dicomscope.git

dicomscope

• W bad-jar-name
  • usr/share/java/DICOMscope-3.6.0.jar

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/discosnp.git
  • vcs-git https://anonscm.debian.org/git/debian-med/discosnp.git

discosnp

• W binary-without-manpage
  • usr/bin/discoSnp_to_csv
  • usr/bin/discoSnp_to_csv
  • usr/bin/discoSnp_to_genotypes
  • usr/bin/discoSnp_to_genotypes
• W manpage-has-useless-whatis-entry
  • usr/share/man/man1/kissnp2.1.gz
  • usr/share/man/man1/kissnp2.1.gz
  • usr/share/man/man1/kissreads.1.gz
  • usr/share/man/man1/kissreads.1.gz

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/disulfinder.git
  • vcs-git https://anonscm.debian.org/git/debian-med/disulfinder.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/dnaclust.git
  • vcs-git https://anonscm.debian.org/git/debian-med/dnaclust.git

dnaclust

• W binary-without-manpage
  • usr/bin/dnaclust-abun
  • usr/bin/dnaclust-abun
  • usr/bin/dnaclust-ref
  • usr/bin/dnaclust-ref
  • usr/bin/find-large-clusters
  • usr/bin/find-large-clusters
  • usr/bin/generate_test_clusters
  • usr/bin/generate_test_clusters
  • usr/bin/star-align
  • usr/bin/star-align

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/dssp.git
  • vcs-git https://anonscm.debian.org/git/debian-med/dssp.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/e-mem.git
  • vcs-git https://anonscm.debian.org/git/debian-med/e-mem.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ecopcr.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ecopcr.git

ecopcr

• W binary-without-manpage
  • usr/bin/ecoPCRFilter
  • usr/bin/ecoPCRFilter
  • usr/bin/ecoSort
  • usr/bin/ecoSort

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/edtsurf.git
  • vcs-git https://anonscm.debian.org/git/debian-med/edtsurf.git

eigensoft

• W binary-without-manpage
  • usr/bin/baseprog
  • usr/bin/baseprog
  • usr/bin/convertf
  • usr/bin/convertf
  • usr/bin/eigenstrat
  • usr/bin/eigenstrat
  • usr/bin/eigenstratQTL
  • usr/bin/eigenstratQTL
  • usr/bin/evec2pca
  • usr/bin/evec2pca
  • usr/bin/evec2pca-ped
  • usr/bin/evec2pca-ped
  • usr/bin/gc-eigensoft
  • usr/bin/gc-eigensoft
  • usr/bin/mergeit
  • usr/bin/mergeit
  • usr/bin/pca
  • usr/bin/pca
  • usr/bin/pcatoy
  • usr/bin/pcatoy
  • usr/bin/smartpca
  • usr/bin/smartpca
  • usr/bin/smartrel
  • usr/bin/smartrel
  • usr/bin/smshrink
  • usr/bin/smshrink
  • usr/bin/twstats
  • usr/bin/twstats

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/embassy-domainatrix.git
  • vcs-git https://anonscm.debian.org/git/debian-med/embassy-domainatrix.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/embassy-domalign.git
  • vcs-git https://anonscm.debian.org/git/debian-med/embassy-domalign.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/embassy-domsearch.git
  • vcs-git https://anonscm.debian.org/git/debian-med/embassy-domsearch.git

embassy-domsearch

• E binary-or-shlib-defines-rpath
  • usr/bin/seqfraggle /usr/lib/emboss/lib
  • usr/bin/seqfraggle /usr/lib/emboss/lib
  • usr/bin/seqnr /usr/lib/emboss/lib
  • usr/bin/seqnr /usr/lib/emboss/lib
  • usr/bin/seqsearch /usr/lib/emboss/lib
  • usr/bin/seqsearch /usr/lib/emboss/lib
  • usr/bin/seqsort /usr/lib/emboss/lib
  • usr/bin/seqsort /usr/lib/emboss/lib
  • usr/bin/seqwords /usr/lib/emboss/lib
  • usr/bin/seqwords /usr/lib/emboss/lib

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/embassy-phylip.git
  • vcs-git https://anonscm.debian.org/git/debian-med/embassy-phylip.git

emboss

• W binary-without-manpage
  • usr/bin/acdgalaxy
  • usr/bin/acdgalaxy
  • usr/bin/assemblyget
  • usr/bin/assemblyget
  • usr/bin/embossupdate
  • usr/bin/embossupdate
  • usr/bin/featmerge
  • usr/bin/featmerge
  • usr/bin/infoassembly
  • usr/bin/infoassembly
  • usr/bin/jembossctl
  • usr/bin/jembossctl
  • usr/bin/refseqget
  • usr/bin/refseqget
  • usr/bin/variationget
  • usr/bin/variationget
  • usr/bin/xmlget
  • usr/bin/xmlget
  • usr/bin/xmltext
  • usr/bin/xmltext

emboss-doc

• E doc-base-file-references-missing-file
  • domainatrix:13 /usr/share/doc/emboss-doc/doc/manuals/domainatrix.txt
  • emboss-apps:8 /usr/share/doc/emboss-doc/doc/programs/html/index.html
  • emboss-apps:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • emboss-groups:8 /usr/share/doc/emboss-doc/doc/programs/html/groups.html
  • emboss-groups:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • emboss-qg:11 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.pdf
  • emboss-qg:8 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.ps

emboss-lib

• W package-has-unnecessary-activation-of-ldconfig-trigger

emboss-test

• W csh-considered-harmful
  • usr/share/EMBOSS/test/memtest/purify.csh
  • usr/share/EMBOSS/test/memtest/valgrind.csh
  • usr/share/EMBOSS/test/qa/qatest.csh
• W privacy-breach-generic
  • usr/share/EMBOSS/test/data/memenew/ex1.html [<img src="http://meme.nbcr.net/meme/images/meme.png" alt="meme">] (http://meme.nbcr.net/meme/images/meme.png)

jemboss

• W binary-without-manpage
  • usr/bin/jemboss
  • usr/bin/runJemboss.sh
• W classpath-contains-relative-path
  • usr/share/EMBOSS/jemboss/lib/jemboss.jar: lib/jakarta-regexp-1.2.jar, lib/jalviewApplet.jar

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-phototools/entangle.git
  • vcs-git https://anonscm.debian.org/git/pkg-phototools/entangle.git

entangle

• W appstream-metadata-in-legacy-location
  • usr/share/appdata/entangle.appdata.xml
  • usr/share/appdata/entangle.appdata.xml
• E appstream-metadata-legacy-format
  • usr/share/appdata/entangle.appdata.xml
  • usr/share/appdata/entangle.appdata.xml
• W non-dev-pkg-with-shlib-symlink
  • usr/lib/i386-linux-gnu/libentangle_backend.so.0.0.0 usr/lib/i386-linux-gnu/libentangle_backend.so
  • usr/lib/i386-linux-gnu/libentangle_frontend.so.0.0.0 usr/lib/i386-linux-gnu/libentangle_frontend.so
  • usr/lib/x86_64-linux-gnu/libentangle_backend.so.0.0.0 usr/lib/x86_64-linux-gnu/libentangle_backend.so
  • usr/lib/x86_64-linux-gnu/libentangle_frontend.so.0.0.0 usr/lib/x86_64-linux-gnu/libentangle_frontend.so
• W package-name-doesnt-match-sonames
  • libentangle-backend0 libentangle-frontend0
  • libentangle-backend0 libentangle-frontend0

entangle-dbg

• W priority-extra-is-replaced-by-priority-optional

gir1.2-entangle-0.1

• W gir-missing-typelib-dependency
  • usr/share/gir-1.0/Entangle-0.1.gir gir1.2-entangle-0.1
  • usr/share/gir-1.0/Entangle-0.1.gir gir1.2-entangle-0.1
• W gir-section-not-libdevel
  • usr/share/gir-1.0/Entangle-0.1.gir introspection
  • usr/share/gir-1.0/Entangle-0.1.gir introspection

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/epcr.git
  • vcs-git https://anonscm.debian.org/git/debian-med/epcr.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/epigrass.git
  • vcs-git https://anonscm.debian.org/git/debian-med/epigrass.git

epigrass

• W binary-without-manpage
  • usr/bin/neteditor
  • usr/bin/neteditor

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/exonerate.git
  • vcs-git https://anonscm.debian.org/git/debian-med/exonerate.git

• W ancient-standards-version
  • 3.8.3 (released 2009-08-16) (current is 4.2.0)
• W dm-upload-allowed-is-obsolete
• W missing-debian-source-format
• W vcs-browser-links-to-empty-view
  • http://svn.debian.org/wsvn/blends/projects/ezgo/trunk/debian-ezgo/?rev=0&sc=0
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser http://svn.debian.org/wsvn/blends/projects/ezgo/trunk/debian-ezgo/?rev=0&sc=0
  • vcs-svn svn://svn.debian.org/blends/projects/ezgo/trunk/debian-ezgo/

ezgo-accessories

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo Accessories
• W priority-extra-is-replaced-by-priority-optional

ezgo-education

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo Education
• W priority-extra-is-replaced-by-priority-optional

ezgo-games

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo Games
• W priority-extra-is-replaced-by-priority-optional

ezgo-imaging

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo imaging
• W priority-extra-is-replaced-by-priority-optional

ezgo-multimedia

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo multimedia
• W priority-extra-is-replaced-by-priority-optional

ezgo-network

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo network
• W priority-extra-is-replaced-by-priority-optional

ezgo-office

• W command-with-path-in-maintainer-script
  • postrm:25 /usr/sbin/blend-update-usermenus
• E description-is-pkg-name
  • EzGo Office
• W priority-extra-is-replaced-by-priority-optional

ezgo-tasks

• W priority-extra-is-replaced-by-priority-optional

• W spelling-error-in-patch-description
  • debian/patches/remove_non-free_parts.patch occurances occurrences
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/f2j.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/f2j.git

fastlink

• W privacy-breach-generic
  • usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/left.gif" width="130" height="45" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/left.gif)
  • usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/left.gif" width="130" height="45" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/left.gif)
  • usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif" width="125" height="1" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif)
  • usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif" width="125" height="1" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif)
  • usr/share/doc/fastlink/fastlink.html [<link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css">] (http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css)
  • usr/share/doc/fastlink/fastlink.html [<link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css">] (http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css)

fastlink-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/b3/6938cf60b53cfb732491561c3440c3471c65aa.debug
  • usr/lib/debug/.build-id/bb/17609a3a55ee19b4a5e67fa74169b496104777.debug

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/fasttree.git
  • vcs-git https://anonscm.debian.org/git/debian-med/fasttree.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/fastx-toolkit.git
  • vcs-git https://anonscm.debian.org/git/debian-med/fastx-toolkit.git

fastx-toolkit

• W script-with-language-extension
  • usr/bin/fasta_clipping_histogram.pl
  • usr/bin/fasta_clipping_histogram.pl
  • usr/bin/fastq_quality_boxplot_graph.sh
  • usr/bin/fastq_quality_boxplot_graph.sh
  • usr/bin/fastx_barcode_splitter.pl
  • usr/bin/fastx_barcode_splitter.pl
  • usr/bin/fastx_nucleotide_distribution_graph.sh
  • usr/bin/fastx_nucleotide_distribution_graph.sh
  • usr/bin/fastx_nucleotide_distribution_line_graph.sh
  • usr/bin/fastx_nucleotide_distribution_line_graph.sh

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser http://anonscm.debian.org/cgit/pkg-java/fest-reflect.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/fest-reflect.git

• W incomplete-creative-commons-license
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-med/ffindex.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ffindex.git

libffindex0 (0.9.9.7-4+b1; main)

• W package-name-doesnt-match-sonames
  • libffindex2.0.2

• W incomplete-creative-commons-license

ffindex

• W binary-without-manpage
  • usr/bin/ffindex_from_fasta_with_split
  • usr/bin/ffindex_order
  • usr/bin/ffindex_reduce

• W spelling-error-in-patch-description
  • debian/patches/GIF-is-depricated.patch depricated deprecated
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/figtree.git
  • vcs-git https://anonscm.debian.org/git/debian-med/figtree.git

• W ancient-standards-version
  • 3.9.5 (released 2013-10-28) (current is 4.2.0)
• W debian-rules-uses-deprecated-makefile
  • line 8 /usr/share/cdbs/1/class/perlmodule.mk
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser http://anonscm.debian.org/gitweb/?p=debian-science/packages/findimagedupes.git
  • vcs-git git://anonscm.debian.org/debian-science/packages/findimagedupes.git

findimagedupes (2.18-6+b3; main)

• W manpage-has-errors-from-pod2man
  • usr/share/man/man1/findimagedupes.1p.gz:383
  • usr/share/man/man1/findimagedupes.1p.gz:383

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/fis-gtm.git
  • vcs-git https://anonscm.debian.org/git/debian-med/fis-gtm.git

fis-gtm-6.3-003a (6.3-003A-2+b1; main)

• W non-standard-dir-perm
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/ 0775 != 0755
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/plugin/gtmcrypt/ 0775 != 0755
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/utf8/gtmsecshrdir/ 0775 != 0755
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/ 0775 != 0755
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/ 0775 != 0755
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/utf8/gtmsecshrdir/ 0775 != 0755
• W non-standard-file-perm
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDE.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEADD.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDECHANG.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEDELET.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEEXIT.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEGET.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEHELP.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEINIT.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEINITSZ.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDELOCKS.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDELOG.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEMAP.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEMSGIN.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEPARSE.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEPUT.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEQUIT.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDERENAM.o 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GDEVERIF.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GTMDEFINEDTYPESTODB.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GTMDEFINEDTYPESTODB.o 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GTMDefinedTypesInitDebug.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GTMDefinedTypesInitDebug.o 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GTMHELP.m 0664 != 0644
  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/GTMHELP.o 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/_HEX2UTF.m 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/_HO.m 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/_MPIECE.m 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/_OD.m 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/_PATCODE.m 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/_PEEKBYNAME.m 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/_RANDSTR.m 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/_RCE.m 0664 != 0644
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  • usr/lib/i386-linux-gnu/fis-gtm/V6.3-003A_i686/_SQROOT.m 0664 != 0644
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  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/gtmdefinedtypestodb.m 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/gtmgblstat.xc 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/gtmhelp.dat 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/gtmhelp.gld 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/gtmhelp.m 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/gtmhlpld.m 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/gtmthreadgblasm.m 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/gtmxc_types.h 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/libgtmshr.so 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/libgtmutil.so 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/lkehelp.dat 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/lkehelp.gld 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/main_pragma.h 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/mupiphelp.dat 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/mupiphelp.gld 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/pinentry.m 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/Makefile 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/README 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtm_tls_impl.c 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtm_tls_impl.h 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtm_tls_interface.h 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_dbk_ref.c 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_dbk_ref.h 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_interface.h 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_pk_ref.c 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_pk_ref.h 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_ref.c 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_ref.h 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_sym_ref.c 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_sym_ref.h 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_util.c 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/gtmcrypt_util.h 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/maskpass.c 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/pinentry.m 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/plugin/gtmcrypt/source.tar 0664 != 0644
  • usr/lib/x86_64-linux-gnu/fis-gtm/V6.3-003A_x86_64/utf8/libgtmutil.so 0664 != 0644

• W ancient-python-version-field
  • x-python-version 2.6
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/fitgcp.git
  • vcs-git https://anonscm.debian.org/git/debian-med/fitgcp.git

freebayes

• W binary-without-manpage
  • usr/bin/bamleftalign
  • usr/bin/freebayes

• W debian-rules-uses-unnecessary-dh-argument
  • dh ... --parallel (line 55)
• W dep5-copyright-license-name-not-unique
  • bsd-revised (paragraph at line 174)
  • pd (paragraph at line 167)
• W incomplete-creative-commons-license
• W obsolete-url-in-packaging
  • debian/copyright http://code.google.com/p/freemedforms/downloads/list
• W patch-file-present-but-not-mentioned-in-series
  • 076_freeaccount-quit-segfaulting
  • 076_hurd_glibc_install
  • 076_rpath_hurd_glibc
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/freemedforms-project.git
  • vcs-git https://anonscm.debian.org/git/debian-med/freemedforms-project.git

freemedforms-libs

• W package-has-unnecessary-activation-of-ldconfig-trigger

• W debian-rules-sets-dpkg-architecture-variable
  • DEB_BUILD_ARCH (line 7)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/g2.git
  • vcs-git https://anonscm.debian.org/git/debian-med/g2.git

libg20

• W package-name-doesnt-match-sonames
  • libg2-0.72
  • libg2-0.72

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/garli.git
  • vcs-git https://anonscm.debian.org/git/debian-med/garli.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debichem/packages/garlic.git
  • vcs-git https://anonscm.debian.org/git/debichem/packages/garlic.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/gasic.git
  • vcs-git https://anonscm.debian.org/git/debian-med/gasic.git

• W dep5-copyright-license-name-not-unique
  • (paragraph at line 133)
  • (paragraph at line 140)
  • (paragraph at line 314)
  • (paragraph at line 365)
  • gpl-1+ (paragraph at line 38)
• W missing-license-paragraph-in-dep5-copyright
  • artistic (paragraph at line 82)
  • artistic-2.0 (paragraph at line 129)
  • gpl-1+ (paragraph at line 129)
  • mit (paragraph at line 100)
• W obsolete-url-in-packaging
  • debian/copyright http://search.cpan.org/dist/GBrowse/
  • debian/watch http://search.cpan.org/dist/GBrowse
• W patch-file-present-but-not-mentioned-in-series
  • skipRenderFarmTest_UpstreamBug12
• W spelling-error-in-patch-description
  • debian/patches/manpages.patch Forwaded Forwarded
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/gbrowse.git
  • vcs-git https://anonscm.debian.org/git/debian-med/gbrowse.git

gbrowse

• W binary-without-manpage
  • usr/bin/gbrowse_configure_slaves
• W maintainer-script-should-not-use-recursive-chown-or-chmod
  • postinst:11
  • postinst:12
  • postinst:13
  • postinst:14
  • postinst:16
• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm.gz
  • usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::Status.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/Bio::DB::SeqFeature::Store::Alias.3pm.gz 263: warning [p 2, 9.5i]: can't break line
  • usr/share/man/man3/Bio::Graphics::Browser2::PluginSet.3pm.gz 144: warning [p 1, 1.8i, div `an-div', 0.2i]: can't break line
• W script-not-executable
  • etc/default/gbrowse-aws-balancer
  • etc/default/gbrowse-slave

gbrowse-data

• W maintainer-script-should-not-use-recursive-chown-or-chmod
  • postinst:7
  • postinst:8

• W python-foo-but-no-python3-foo
  • python-gdcm
  • python-vtkgdcm

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/gdpc.git
  • vcs-git https://anonscm.debian.org/git/debian-med/gdpc.git

• W patch-file-present-but-not-mentioned-in-series
  • add-libtre
  • arm64-no-m64
  • fix-unsigned-char
  • fix_caption.patch
  • manual_fixed_dates.patch
  • mips-64
  • sort-inputs
  • spelling
  • spelling.patch
  • strip-nonpublic
  • typecheck-fixes
  • use-pkgconfig
• W python-foo-but-no-python3-foo
  • python-genometools
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/genometools.git
  • vcs-git https://anonscm.debian.org/git/debian-med/genometools.git

• W useless-autoreconf-build-depends
  • autotools-dev
  • dh-autoreconf
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/gentle.git
  • vcs-git https://anonscm.debian.org/git/debian-med/gentle.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/gff2aplot.git
  • vcs-git https://anonscm.debian.org/git/debian-med/gff2aplot.git

gff2aplot

• W privacy-breach-generic
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<img class="pnt" src="http://genome.imim.es/g_icons/top.gif" height=15 width=15 border=0>] (http://genome.imim.es/g_icons/top.gif)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<img class="pnt" src="http://genome.imim.es/g_icons/top.gif" height=15 width=15 border=0>] (http://genome.imim.es/g_icons/top.gif)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<img src="http://genome.imim.es/g_icons/dmd.gif" alt="*" height=8 width=8 border=0>] (http://genome.imim.es/g_icons/dmd.gif)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<img src="http://genome.imim.es/g_icons/dmd.gif" alt="*" height=8 width=8 border=0>] (http://genome.imim.es/g_icons/dmd.gif)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<img src="http://genome.imim.es/g_icons/lhr.gif" alt="home" height=10 width=36 border=0>] (http://genome.imim.es/g_icons/lhr.gif)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<img src="http://genome.imim.es/g_icons/lhr.gif" alt="home" height=10 width=36 border=0>] (http://genome.imim.es/g_icons/lhr.gif)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<link rel=stylesheet type="text/css" href="http://genome.imim.es/genome.css" title="genome">] (http://genome.imim.es/genome.css)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<link rel=stylesheet type="text/css" href="http://genome.imim.es/genome.css" title="genome">] (http://genome.imim.es/genome.css)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<link rel=stylesheet type="text/css" href="http://genome.imim.es/software/gfftools/gff2aplot_docs/howto.css" title="genome">] (http://genome.imim.es/software/gfftools/gff2aplot_docs/howto.css)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<link rel=stylesheet type="text/css" href="http://genome.imim.es/software/gfftools/gff2aplot_docs/howto.css" title="genome">] (http://genome.imim.es/software/gfftools/gff2aplot_docs/howto.css)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<script type="text/javascript" src="http://genome.imim.es/genome.js">] (http://genome.imim.es/genome.js)
  • usr/share/doc/gff2aplot/examples/mhcregion/index.html [<script type="text/javascript" src="http://genome.imim.es/genome.js">] (http://genome.imim.es/genome.js)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<img class="pnt" src="http://genome.imim.es/g_icons/top.gif" height=15 width=15 border=0>] (http://genome.imim.es/g_icons/top.gif)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<img class="pnt" src="http://genome.imim.es/g_icons/top.gif" height=15 width=15 border=0>] (http://genome.imim.es/g_icons/top.gif)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<img src="http://genome.imim.es/g_icons/dmd.gif" alt="*" height=8 width=8 border=0>] (http://genome.imim.es/g_icons/dmd.gif)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<img src="http://genome.imim.es/g_icons/dmd.gif" alt="*" height=8 width=8 border=0>] (http://genome.imim.es/g_icons/dmd.gif)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<img src="http://genome.imim.es/g_icons/lhr.gif" alt="home" height=10 width=36 border=0>] (http://genome.imim.es/g_icons/lhr.gif)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<img src="http://genome.imim.es/g_icons/lhr.gif" alt="home" height=10 width=36 border=0>] (http://genome.imim.es/g_icons/lhr.gif)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<link rel=stylesheet type="text/css" href="http://genome.imim.es/genome.css" title="genome">] (http://genome.imim.es/genome.css)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<link rel=stylesheet type="text/css" href="http://genome.imim.es/genome.css" title="genome">] (http://genome.imim.es/genome.css)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<link rel=stylesheet type="text/css" href="http://genome.imim.es/software/gfftools/gff2aplot_docs/howto.css" title="genome">] (http://genome.imim.es/software/gfftools/gff2aplot_docs/howto.css)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<link rel=stylesheet type="text/css" href="http://genome.imim.es/software/gfftools/gff2aplot_docs/howto.css" title="genome">] (http://genome.imim.es/software/gfftools/gff2aplot_docs/howto.css)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<script type="text/javascript" src="http://genome.imim.es/genome.js">] (http://genome.imim.es/genome.js)
  • usr/share/doc/gff2aplot/examples/wublast/index.html [<script type="text/javascript" src="http://genome.imim.es/genome.js">] (http://genome.imim.es/genome.js)

• W ancient-python-version-field
  • x-python-version 2.6
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/giira.git
  • vcs-git https://anonscm.debian.org/git/debian-med/giira.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ginkgocadx.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ginkgocadx.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/glam2.git
  • vcs-git https://anonscm.debian.org/git/debian-med/glam2.git

• W incomplete-creative-commons-license

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/graphlan.git
  • vcs-git https://anonscm.debian.org/git/debian-med/graphlan.git

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 0.5.4-4
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/grinder.git
  • vcs-git https://anonscm.debian.org/git/debian-med/grinder.git

grinder

• E wrong-path-for-interpreter
  • usr/bin/average_genome_size (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/change_paired_read_orientation (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/grinder (#!/usr/bin/env != /usr/bin/perl)

• W spelling-error-in-patch-description
  • debian/patches/add_missing_lib_for_check.patch explict explicit
• W unnecessary-testsuite-autopkgtest-field
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/gubbins.git
  • vcs-git https://anonscm.debian.org/git/debian-med/gubbins.git

• W typo-in-debhelper-override-target
  • override_dh_configure -> override_dh_auto_configure (line 18)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/gwyddion.git
  • vcs-git https://anonscm.debian.org/git/debian-med/gwyddion.git

gwyddion-plugins

• E wrong-path-for-interpreter
  • usr/lib/i386-linux-gnu/gwyddion/plugins/process/invert_perl.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/x86_64-linux-gnu/gwyddion/plugins/process/invert_perl.pl (#!/usr/bin/env != /usr/bin/perl)

libgwyddion2-0

• E missing-depends-on-sensible-utils
  • usr/lib/i386-linux-gnu/libgwyapp2.so.0.20.0
  • usr/lib/x86_64-linux-gnu/libgwyapp2.so.0.20.0

• W patch-file-present-but-not-mentioned-in-series
  • Makefile
  • gcc-6.1.patch
  • gcc-6.1_use_inline.patch
  • help
  • paths
  • rest1
  • unnecessary_libz
  • unused_variables_warning
  • version_bump
• W spelling-error-in-patch-description
  • debian/patches/fix_type_mismatch_in_printf.patch Thats That's
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/hhsuite.git
  • vcs-git https://anonscm.debian.org/git/debian-med/hhsuite.git

hhsuite

• E wrong-path-for-interpreter
  • usr/share/hhsuite/scripts/mergeali.pl (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/hilive.git
  • vcs-git https://anonscm.debian.org/git/debian-med/hilive.git

• W useless-autoreconf-build-depends
  • dh-autoreconf
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-med/hmmer.git
  • vcs-git https://anonscm.debian.org/git/debian-med/hmmer.git

hmmer

• W binary-without-manpage
  • usr/bin/hmmc2
  • usr/bin/hmmc2
  • usr/bin/hmmerfm-exactmatch
  • usr/bin/hmmerfm-exactmatch
• W manpage-has-errors-from-man
  • usr/share/man/man1/hmmsim.1.gz 256: warning: macro `fs'' not defined
  • usr/share/man/man1/hmmsim.1.gz 256: warning: macro `fs'' not defined

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-med/hmmer2.git
  • vcs-git https://anonscm.debian.org/git/debian-med/hmmer2.git

libhmmer2-dev

• E pkg-config-multi-arch-wrong-dir
  • usr/lib/i386-linux-gnu/pkgconfig/libhmmer2.pc full text contains architecture specific dir x86_64-linux-gnu

• W ancient-python-version-field
  • x-python-version 2.5
• W ancient-standards-version
  • 3.9.4 (released 2012-09-19) (current is 4.2.0)
• W build-depends-on-python-sphinx-only
• W dep5-copyright-license-name-not-unique
  • gpl-3+ (paragraph at line 22)
  • gpl-3+ (paragraph at line 27)
• W python-foo-but-no-python3-foo
  • python-htseq
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser http://anonscm.debian.org/gitweb/?p=debian-med/python-htseq.git
  • vcs-git git://anonscm.debian.org/debian-med/python-htseq.git

python-htseq-doc

• W spelling-error-in-description-synopsis
  • documetation documentation

• W ancient-python-version-field
  • x-python-version 2.5
• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.2.0)
• W build-depends-on-python-sphinx-only
• W global-files-wildcard-not-first-paragraph-in-dep5-copyright
  • (paragraph at line 23)
• W python-foo-but-no-python3-foo
  • python-htseq
• W spelling-error-in-patch-description
  • debian/patches/skip_tests_with_rounding_differences.patch occuring occurring
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/htseq.git
  • vcs-git git://anonscm.debian.org/debian-med/htseq.git

python-htseq-doc

• W spelling-error-in-description-synopsis
  • documetation documentation

• W ancient-python-version-field
  • x-python-version 2.7
  • x-python3-version 3.4

libhtsjdk-java-doc

• W embedded-javascript-library
  • usr/share/doc/libhtsjdk-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-1.10.2.js please use libjs-jquery
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.structure.css please use libjs-jquery-ui
  • usr/share/doc/libhtsjdk-java/api/jquery/jquery-ui.structure.min.css please use libjs-jquery-ui

• W patch-file-present-but-not-mentioned-in-series
  • fix_pkg-config.patch
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/htslib.git
  • vcs-git https://anonscm.debian.org/git/debian-med/htslib.git -b debian/unstable

htslib-test

• E wrong-path-for-interpreter
  • usr/share/htslib-test/test/test-bcf-sr.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/htslib-test/test/test-logging.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/htslib-test/test/test.pl (#!/usr/bin/env != /usr/bin/perl)

libhts-dev

• W manpage-has-errors-from-man
  • usr/share/man/man5/vcf.5.gz file `<standard input>', around line 39:
  • usr/share/man/man5/vcf.5.gz file `<standard input>', around line 39:

htslib-test

• E wrong-path-for-interpreter
  • usr/share/htslib-test/test/test-bcf-sr.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/htslib-test/test/test-logging.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/htslib-test/test/test.pl (#!/usr/bin/env != /usr/bin/perl)

libhts-dev

• W manpage-has-errors-from-man
  • usr/share/man/man5/vcf.5.gz file `<standard input>', around line 39:

libhts-dev

• W manpage-has-errors-from-man
  • usr/share/man/man5/faidx.5.gz file `<standard input>', around line 49:
  • usr/share/man/man5/vcf.5.gz file `<standard input>', around line 39:

• W patch-file-present-but-not-mentioned-in-series
  • debug_r_build.patch
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/hyphy.git
  • vcs-git https://anonscm.debian.org/git/debian-med/hyphy.git

hyphy-mpi

• W binary-without-manpage
  • usr/bin/hyphympi
  • usr/bin/hyphympi

hyphy-pt

• W binary-without-manpage
  • usr/bin/hyphymp
  • usr/bin/hyphymp

libicu4j-java-doc

• W embedded-javascript-library
  • usr/share/doc/libicu4j-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libicu4j-java/api/jquery/jquery-1.10.2.js please use libjs-jquery
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.structure.css please use libjs-jquery-ui
  • usr/share/doc/libicu4j-java/api/jquery/jquery-ui.structure.min.css please use libjs-jquery-ui

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/icu4j-4.2.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/icu4j-4.2.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/idba.git
  • vcs-git https://anonscm.debian.org/git/debian-med/idba.git

• W ancient-standards-version
  • 3.9.5 (released 2013-10-28) (current is 4.2.0)
• W dep5-copyright-license-name-not-unique
  • gpl-2+ (paragraph at line 12)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser http://anonscm.debian.org/gitweb/?p=debian-med/igraph.git
  • vcs-git git://anonscm.debian.org/debian-med/igraph.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/igv.git
  • vcs-git https://anonscm.debian.org/git/debian-med/igv.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-phototools/imageindex.git
  • vcs-git https://anonscm.debian.org/git/pkg-phototools/imageindex.git

• W debian-rules-uses-unnecessary-dh-argument
  • dh ... --parallel (line 7)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/imagevis3d.git
  • vcs-git https://anonscm.debian.org/git/debian-med/imagevis3d.git

imview

• E missing-depends-on-sensible-utils
  • usr/bin/imview
  • usr/bin/imview

• W ancient-python-version-field
  • x-python-version 2.7
• W patch-file-present-but-not-mentioned-in-series
  • 10_change_casmoothing_import.patch
  • 10_import_mips.patch
  • 10_wxpython3.patch
  • 20_fix_division_by_zero.patch
• W spelling-error-in-patch-description
  • debian/patches/20_fix_one_slice_import.patch serie series
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/invesalius.git
  • vcs-git https://anonscm.debian.org/git/debian-med/invesalius.git

ipig

• W bad-jar-name
  • usr/share/java/iPiG-0.0.r5.jar
  • usr/share/java/iPiG-0.0.r5.jar

iva

• W package-installs-java-bytecode
  • usr/lib/python3/dist-packages/iva/gage/GetFastaStats$ContigAt.class
  • usr/lib/python3/dist-packages/iva/gage/GetFastaStats.class
  • usr/lib/python3/dist-packages/iva/gage/SizeFasta.class
  • usr/lib/python3/dist-packages/iva/gage/SplitFastaByLetter.class
  • usr/lib/python3/dist-packages/iva/gage/Utils$Pair.class
  • usr/lib/python3/dist-packages/iva/gage/Utils$ToProtein.class
  • usr/lib/python3/dist-packages/iva/gage/Utils$Translate.class
  • usr/lib/python3/dist-packages/iva/gage/Utils.class
  • usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$1.class
  • usr/lib/python3/dist-packages/iva/gage/getScaffoldStats$Scaffold.class
  • usr/lib/python3/dist-packages/iva/gage/getScaffoldStats.class

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/jam-lib.git
  • vcs-git https://anonscm.debian.org/git/debian-med/jam-lib.git

libjebl2-java-doc

• W embedded-javascript-library
  • usr/share/doc/libjebl2-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libjebl2-java/api/jquery/jquery-1.10.2.js please use libjs-jquery
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.structure.css please use libjs-jquery-ui
  • usr/share/doc/libjebl2-java/api/jquery/jquery-ui.structure.min.css please use libjs-jquery-ui

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/jellyfish.git
  • vcs-git https://anonscm.debian.org/git/debian-med/jellyfish.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/jellyfish1.git
  • vcs-git https://anonscm.debian.org/git/debian-med/jellyfish1.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/jlapack.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/jlapack.git

jmodeltest

• W binary-without-manpage
  • usr/bin/runjmodeltest-cluster

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/kalign.git
  • vcs-git https://anonscm.debian.org/git/debian-med/kalign.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/king.git
  • vcs-git https://anonscm.debian.org/git/debian-med/king.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/kissplice.git
  • vcs-git https://anonscm.debian.org/git/debian-med/kissplice.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/kraken.git
  • vcs-git https://anonscm.debian.org/git/debian-med/kraken.git

kraken

• E wrong-path-for-interpreter
  • usr/lib/kraken/convert_gb_to_fa.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/convert_gb_to_fa.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/cp_into_tempfile.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/cp_into_tempfile.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken-build (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken-build (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken-filter (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken-filter (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken-mpa-report (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken-mpa-report (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken-report (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken-report (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken-translate (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/kraken-translate (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/lookup_accession_numbers.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/lookup_accession_numbers.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/read_merger.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/read_merger.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/report_gi_numbers.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/report_gi_numbers.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/rsync_from_ncbi.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/rsync_from_ncbi.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/scan_fasta_file.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/scan_fasta_file.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/verify_gi_numbers.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/kraken/verify_gi_numbers.pl (#!/usr/bin/env != /usr/bin/perl)

kraken-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/5a/95db9d37b103ed45dd62a0a19108455c904c5c.debug
  • usr/lib/debug/.build-id/5b/9d7aeedbaf848e3c131d3a1fe201f9bb267bba.debug
  • usr/lib/debug/.build-id/6e/e103eeb3a122e17ae03a4735785829b40689a5.debug
  • usr/lib/debug/.build-id/73/f1927edf596c534b03846e0836e56cd60af703.debug
  • usr/lib/debug/.build-id/7b/458014a9956c9ef1bcf931fd9a5c920d0d95e2.debug
  • usr/lib/debug/.build-id/ad/689cf52124734429e37ed83288eef31ace417d.debug
  • usr/lib/debug/.build-id/bb/2fabd920f1b09d67259a198dd7dbe8aa0edaa1.debug
  • usr/lib/debug/.build-id/d6/9fdf40681557720870acffee3faf80774c1461.debug
  • usr/lib/debug/.build-id/df/0a466793a72ab37d0b5427def070aa2bed7597.debug
  • usr/lib/debug/.build-id/e5/dad78fd2fc3d52c697bbb6396e62654a3b2a98.debug
  • usr/lib/debug/.build-id/f2/05d8d3a944dffbb658b91d9488c5d7574221b1.debug
  • usr/lib/debug/.build-id/fb/18a10f226a31e7b222d3043482f64e8ae79927.debug

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/lamarc.git
  • vcs-git https://anonscm.debian.org/git/debian-med/lamarc.git

lamarc

• W binary-without-manpage
  • usr/bin/lam_conv
  • usr/bin/lam_conv
  • usr/bin/lamarc
  • usr/bin/lamarc

last-align

• W binary-without-manpage
  • usr/bin/lastdb8
  • usr/bin/lastdb8
  • usr/bin/maf-cut
  • usr/bin/maf-cut
  • usr/bin/parallel-fasta
  • usr/bin/parallel-fasta
  • usr/bin/parallel-fastq
  • usr/bin/parallel-fastq

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/lefse.git
  • vcs-git https://anonscm.debian.org/git/debian-med/lefse.git

lefse

• W binary-without-manpage
  • usr/bin/format_input
  • usr/bin/lefse2circlader
  • usr/bin/plot_cladogram
  • usr/bin/plot_features
  • usr/bin/plot_res
  • usr/bin/qiime2lefse
  • usr/bin/run_lefse

• W obsolete-url-in-packaging
  • debian/control http://search.cpan.org/dist/AcePerl/
  • debian/copyright http://search.cpan.org/CPAN/authors/id/L/LD/LDS/AcePerl-1.92.tar.gz
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libace-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libace-perl.git

libace-perl

• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Ace.3pm.gz:1191
  • usr/share/man/man3/Ace.3pm.gz:1191
  • usr/share/man/man3/Ace::Graphics::GlyphFactory.3pm.gz:187
  • usr/share/man/man3/Ace::Graphics::GlyphFactory.3pm.gz:187
  • usr/share/man/man3/Ace::Sequence::GappedAlignment.3pm.gz:152
  • usr/share/man/man3/Ace::Sequence::GappedAlignment.3pm.gz:152
  • usr/share/man/man3/Ace::Sequence::Gene.3pm.gz:165
  • usr/share/man/man3/Ace::Sequence::Gene.3pm.gz:165
  • usr/share/man/man3/Ace::Sequence::Transcript.3pm.gz:165
  • usr/share/man/man3/Ace::Sequence::Transcript.3pm.gz:165

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbio-coordinate-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbio-coordinate-perl.git

• W obsolete-url-in-packaging
  • debian/copyright http://search.cpan.org/dist/Bio-Das-Lite/
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbio-das-lite-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbio-das-lite-perl.git

• W obsolete-url-in-packaging
  • debian/control http://search.cpan.org/dist/Bio-Graphics/
  • debian/copyright http://search.cpan.org/CPAN/authors/id/L/LD/LDS/Bio-Graphics-2.33.tar.gz
  • debian/upstream/metadata http://search.cpan.org/dist/Bio-Graphics/
  • debian/watch http://search.cpan.org/dist/Bio-Graphics/
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbio-graphics-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbio-graphics-perl.git

libbio-graphics-perl

• W binary-without-manpage
  • usr/bin/bam_coverage_windows
  • usr/bin/coverage_to_topoview
  • usr/bin/glyph_help
  • usr/bin/render_msa
• W executable-not-elf-or-script
  • usr/share/doc/libbio-graphics-perl/examples/feature_data.gff
  • usr/share/doc/libbio-graphics-perl/examples/feature_data.txt
• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Graphics::Glyph::fb_shmiggle.3pm.gz
  • usr/share/man/man3/Bio::Graphics::Wiggle::Loader.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/Bio::Graphics::Glyph::decorated_transcript.3pm.gz 160: warning [p 1, 5.5i]: can't break line
  • usr/share/man/man3/Bio::Graphics::Glyph::hybrid_plot.3pm.gz 161: warning [p 1, 5.5i]: can't break line
  • usr/share/man/man3/Bio::Graphics::Glyph::ideogram.3pm.gz 302: warning [p 3, 2.5i]: can't break line
  • usr/share/man/man3/Bio::Graphics::Glyph::vista_plot.3pm.gz 169: warning [p 1, 6.5i]: can't break line
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::Graphics::FeatureDir.3pm.gz:222

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbio-mage-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbio-mage-perl.git

libbio-mage-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::MAGE::Association.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::MAGE::Array::Array.3pm.gz:1069
  • usr/share/man/man3/Bio::MAGE::Array::ArrayGroup.3pm.gz:1266
  • usr/share/man/man3/Bio::MAGE::Array::ArrayManufacture.3pm.gz:1078
  • usr/share/man/man3/Bio::MAGE::Array::ArrayManufactureDeviation.3pm.gz:551
  • usr/share/man/man3/Bio::MAGE::Array::FeatureDefect.3pm.gz:572
  • usr/share/man/man3/Bio::MAGE::Array::Fiducial.3pm.gz:739
  • usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMS.3pm.gz:788
  • usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMSBiomaterial.3pm.gz:919
  • usr/share/man/man3/Bio::MAGE::Array::PositionDelta.3pm.gz:568
  • usr/share/man/man3/Bio::MAGE::Array::ZoneDefect.3pm.gz:572
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ArrayDesign.3pm.gz:1082
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::CompositeGroup.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::DesignElementGroup.3pm.gz:799
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::FeatureGroup.3pm.gz:1131
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::PhysicalArrayDesign.3pm.gz:1185
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ReporterGroup.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::Zone.3pm.gz:1005
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneGroup.3pm.gz:765
  • usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneLayout.3pm.gz:658
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Audit.3pm.gz:737
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Contact.3pm.gz:1003
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Organization.3pm.gz:1053
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Person.3pm.gz:1182
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Security.3pm.gz:808
  • usr/share/man/man3/Bio::MAGE::AuditAndSecurity::SecurityGroup.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BQS::BibliographicReference.3pm.gz:1148
  • usr/share/man/man3/Bio::MAGE::BioAssay::BioAssay.3pm.gz:812
  • usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayCreation.3pm.gz:906
  • usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayTreatment.3pm.gz:846
  • usr/share/man/man3/Bio::MAGE::BioAssay::Channel.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssay::DerivedBioAssay.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioAssay::FeatureExtraction.3pm.gz:842
  • usr/share/man/man3/Bio::MAGE::BioAssay::Hybridization.3pm.gz:902
  • usr/share/man/man3/Bio::MAGE::BioAssay::Image.3pm.gz:840
  • usr/share/man/man3/Bio::MAGE::BioAssay::ImageAcquisition.3pm.gz:902
  • usr/share/man/man3/Bio::MAGE::BioAssay::MeasuredBioAssay.3pm.gz:915
  • usr/share/man/man3/Bio::MAGE::BioAssay::PhysicalBioAssay.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayData.3pm.gz:935
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDatum.3pm.gz:617
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMapping.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataCube.3pm.gz:523
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataTuples.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataValues.3pm.gz:440
  • usr/share/man/man3/Bio::MAGE::BioAssayData::CompositeSequenceDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DerivedBioAssayData.3pm.gz:983
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementDimension.3pm.gz:694
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMap.3pm.gz:753
  • usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMapping.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::FeatureDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::MeasuredBioAssayData.3pm.gz:936
  • usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMapping.3pm.gz:491
  • usr/share/man/man3/Bio::MAGE::BioAssayData::ReporterDimension.3pm.gz:748
  • usr/share/man/man3/Bio::MAGE::BioAssayData::Transformation.3pm.gz:996
  • usr/share/man/man3/Bio::MAGE::BioEvent::BioEvent.3pm.gz:759
  • usr/share/man/man3/Bio::MAGE::BioEvent::Map.3pm.gz:753
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterial.3pm.gz:917
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterialMeasurement.3pm.gz:525
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioSample.3pm.gz:962
  • usr/share/man/man3/Bio::MAGE::BioMaterial::BioSource.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioMaterial::Compound.3pm.gz:900
  • usr/share/man/man3/Bio::MAGE::BioMaterial::CompoundMeasurement.3pm.gz:525
  • usr/share/man/man3/Bio::MAGE::BioMaterial::LabeledExtract.3pm.gz:975
  • usr/share/man/man3/Bio::MAGE::BioMaterial::Treatment.3pm.gz:1007
  • usr/share/man/man3/Bio::MAGE::BioSequence::BioSequence.3pm.gz:1191
  • usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeature.3pm.gz:705
  • usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeatureLocation.3pm.gz:583
  • usr/share/man/man3/Bio::MAGE::BioSequence::SequencePosition.3pm.gz:527
  • usr/share/man/man3/Bio::MAGE::Describable.3pm.gz:622
  • usr/share/man/man3/Bio::MAGE::Description::Database.3pm.gz:838
  • usr/share/man/man3/Bio::MAGE::Description::DatabaseEntry.3pm.gz:660
  • usr/share/man/man3/Bio::MAGE::Description::Description.3pm.gz:915
  • usr/share/man/man3/Bio::MAGE::Description::ExternalReference.3pm.gz:611
  • usr/share/man/man3/Bio::MAGE::Description::OntologyEntry.3pm.gz:675
  • usr/share/man/man3/Bio::MAGE::DesignElement::CompositeCompositeMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::DesignElement::CompositePosition.3pm.gz:628
  • usr/share/man/man3/Bio::MAGE::DesignElement::CompositeSequence.3pm.gz:915
  • usr/share/man/man3/Bio::MAGE::DesignElement::DesignElement.3pm.gz:740
  • usr/share/man/man3/Bio::MAGE::DesignElement::Feature.3pm.gz:1043
  • usr/share/man/man3/Bio::MAGE::DesignElement::FeatureInformation.3pm.gz:538
  • usr/share/man/man3/Bio::MAGE::DesignElement::FeatureLocation.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::DesignElement::FeatureReporterMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::DesignElement::MismatchInformation.3pm.gz:566
  • usr/share/man/man3/Bio::MAGE::DesignElement::Position.3pm.gz:568
  • usr/share/man/man3/Bio::MAGE::DesignElement::Reporter.3pm.gz:964
  • usr/share/man/man3/Bio::MAGE::DesignElement::ReporterCompositeMap.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::DesignElement::ReporterPosition.3pm.gz:628
  • usr/share/man/man3/Bio::MAGE::Experiment::Experiment.3pm.gz:988
  • usr/share/man/man3/Bio::MAGE::Experiment::ExperimentDesign.3pm.gz:919
  • usr/share/man/man3/Bio::MAGE::Experiment::ExperimentalFactor.3pm.gz:855
  • usr/share/man/man3/Bio::MAGE::Experiment::FactorValue.3pm.gz:829
  • usr/share/man/man3/Bio::MAGE::Extendable.3pm.gz:486
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster.3pm.gz:795
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::Node.3pm.gz:778
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeContents.3pm.gz:739
  • usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeValue.3pm.gz:662
  • usr/share/man/man3/Bio::MAGE::Identifiable.3pm.gz:746
  • usr/share/man/man3/Bio::MAGE::Measurement::ConcentrationUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::DistanceUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::MassUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::Measurement.3pm.gz:662
  • usr/share/man/man3/Bio::MAGE::Measurement::QuantityUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::TemperatureUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::TimeUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::Measurement::Unit.3pm.gz:494
  • usr/share/man/man3/Bio::MAGE::Measurement::VolumeUnit.3pm.gz:521
  • usr/share/man/man3/Bio::MAGE::NameValueType.3pm.gz:563
  • usr/share/man/man3/Bio::MAGE::Protocol::Hardware.3pm.gz:1050
  • usr/share/man/man3/Bio::MAGE::Protocol::HardwareApplication.3pm.gz:750
  • usr/share/man/man3/Bio::MAGE::Protocol::Parameter.3pm.gz:782
  • usr/share/man/man3/Bio::MAGE::Protocol::ParameterValue.3pm.gz:523
  • usr/share/man/man3/Bio::MAGE::Protocol::Parameterizable.3pm.gz:797
  • usr/share/man/man3/Bio::MAGE::Protocol::ParameterizableApplication.3pm.gz:665
  • usr/share/man/man3/Bio::MAGE::Protocol::Protocol.3pm.gz:1050
  • usr/share/man/man3/Bio::MAGE::Protocol::ProtocolApplication.3pm.gz:930
  • usr/share/man/man3/Bio::MAGE::Protocol::Software.3pm.gz:1007
  • usr/share/man/man3/Bio::MAGE::Protocol::SoftwareApplication.3pm.gz:795
  • usr/share/man/man3/Bio::MAGE::QuantitationType::ConfidenceIndicator.3pm.gz:1040
  • usr/share/man/man3/Bio::MAGE::QuantitationType::DerivedSignal.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::Error.3pm.gz:1041
  • usr/share/man/man3/Bio::MAGE::QuantitationType::ExpectedValue.3pm.gz:1041
  • usr/share/man/man3/Bio::MAGE::QuantitationType::Failed.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::MeasuredSignal.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::PValue.3pm.gz:1041
  • usr/share/man/man3/Bio::MAGE::QuantitationType::PresentAbsent.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::QuantitationType.3pm.gz:992
  • usr/share/man/man3/Bio::MAGE::QuantitationType::Ratio.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::SpecializedQuantitationType.3pm.gz:994
  • usr/share/man/man3/Bio::MAGE::QuantitationType::StandardQuantitationType.3pm.gz:1000

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbio-mage-utils-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbio-mage-utils-perl.git

libbio-mage-utils-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyClassEntry.3pm.gz
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyEntry.3pm.gz
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyHelper.3pm.gz
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyPropertyEntry.3pm.gz
  • usr/share/man/man3/Bio::MAGE::XML::Handler.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::MAGE::SQLUtils.3pm.gz:97
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyClassEntry.3pm.gz:140
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyEntry.3pm.gz:123
  • usr/share/man/man3/Bio::MAGE::Tools::MGEDOntologyPropertyEntry.3pm.gz:114
  • usr/share/man/man3/Bio::MAGE::XML::Handler.3pm.gz:99
  • usr/share/man/man3/Bio::MAGE::XML::Reader.3pm.gz:210
  • usr/share/man/man3/Bio::MAGE::XML::Writer.3pm.gz:306

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbiod.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbiod.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbpp-core.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbpp-core.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbpp-phyl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbpp-phyl.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbpp-phyl-omics.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbpp-phyl-omics.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbpp-popgen.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbpp-popgen.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbpp-qt.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbpp-qt.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbpp-raa.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbpp-raa.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbpp-seq.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbpp-seq.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbpp-seq.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbpp-seq.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libbpp-seq-omics.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libbpp-seq-omics.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libchado-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libchado-perl.git

chado-utils

• W executable-not-elf-or-script
  • usr/share/gmod/chado/bin/Skip_tables.pm
  • usr/share/gmod/chado/bin/create_so_bridge_command
  • usr/share/gmod/chado/bin/dbi.tt2
  • usr/share/gmod/chado/bin/privileges.tmpl
• E wrong-path-for-interpreter
  • usr/share/gmod/chado/bin/chado-build-schema.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/chado-fix-flybase-instance.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/create-bridge-sql.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/create-so-bridge.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/ddltrans (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gencode2sql.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_add_organism.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_apollo_triggers.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_dump_gff3.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_extract_dbxref_from_gff.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_fasta2gff3.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_gff3_preprocessor.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_load_cvterms.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_make_cvtermpath.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_make_gff_from_dbxref.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_materialized_view_tool.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_sort_gff3.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/gmod_update_chado.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/interactions2SIF.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/make_cvtermpath.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/make_partial_indexes.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/pg2cdbi.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/pg2cdbi_viaTT.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/pg2diagram.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/pg2graphviz.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/pg2graphviz_svg.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/pg2html.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/ucsc_genes2gff.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/ucsc_snp2gff.pl (#!/usr/bin/env != /usr/bin/perl)

libchado-perl

• E wrong-path-for-interpreter
  • usr/share/gmod/chado/bin/gmod_chado_properties.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/bin/test_load.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/modules/audit/make_audit_ddl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/modules/bin/makedep.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/modules/bin/mk.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/modules/cv/bridges/bin/create-bridge-sql.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/modules/sequence/apollo-bridge/insert_ad_doc_cv.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/modules/sequence/bdgp/bin/create-so-layer.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/modules/sequence/bridges/bin/create-sofa-bridge.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/schemas/generate_diff_dirs.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/soi/cgi/get_xml.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/soi/scripts/dump_fasta.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/soi/scripts/dump_segment.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/soi/scripts/generegion.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/soi/t/t_soi_parse_intersect (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/src/chado/modules/audit/make_audit_ddl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/src/chado/modules/bin/makedep.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/src/chado/modules/bin/mk.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/src/chado/modules/cv/bridges/bin/create-bridge-sql.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/src/chado/modules/sequence/apollo-bridge/insert_ad_doc_cv.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/src/chado/modules/sequence/bdgp/bin/create-so-layer.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/src/chado/modules/sequence/bridges/bin/create-sofa-bridge.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/gmod/chado/src/chado/schemas/generate_diff_dirs.pl (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libcolt-free-java.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libcolt-free-java.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libctapimkt.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libctapimkt.git

• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.2.0)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/libejml-java.git
  • vcs-git git://anonscm.debian.org/pkg-java/libejml-java.git

libejml-java

• W bad-jar-name
  • usr/share/java/EJML-0.28.jar

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/libexternalsortinginjava-java.git
  • vcs-git https://anonscm.debian.org/pkg-java/libexternalsortinginjava-java.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libfastahack.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libfastahack.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/libfastutil-java.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/libfastutil-java.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libfreecontact-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libfreecontact-perl.git

• W patch-file-present-but-not-mentioned-in-series
  • drop-version-number.patch
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libgenome.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libgenome.git

• W changelog-should-mention-nmu
• W source-nmu-has-incorrect-version-number
  • 1.3.11+svn20110227.4616-2

libgkarrays1-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/65/46bc9c4f4b11661a4cc17e55cd9fb66fce3329.debug
  • usr/lib/debug/.build-id/f9/f907f735b53910edf30d4579c87522085dfaeb.debug

• W obsolete-url-in-packaging
  • debian/copyright http://search.cpan.org/CPAN/authors/id/C/CM/CMUNGALL/go-perl-0.15.tar.gz
• W spelling-error-in-patch-description
  • debian/patches/fix-whatis-entries.patch seperated separated
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libgo-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libgo-perl.git

• W useless-autoreconf-build-depends
  • dh-autoreconf
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-science/packages/libgtkdatabox.git
  • vcs-git https://anonscm.debian.org/git/debian-science/packages/libgtkdatabox.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libgzstream.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libgzstream.git

libgzstream0-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/56/4404f967a57891b86cb498ad227d8205ee4fe8.debug
  • usr/lib/debug/.build-id/67/f6abb514073a299cbc6c38f76f7df4df1526c7.debug

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libhac-java.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libhac-java.git

libhmsbeagle1v5

• W dev-pkg-without-shlib-symlink
  • usr/lib/i386-linux-gnu/libhmsbeagle-opencl.so.21.0.0 usr/lib/i386-linux-gnu/libhmsbeagle-opencl.so

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libhpptools.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libhpptools.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libics.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libics.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/libjsonp-java.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/libjsonp-java.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libkmlframework-java.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libkmlframework-java.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/liblemon.git
  • vcs-git https://anonscm.debian.org/git/debian-med/liblemon.git

liblemon-utils (1.3.1+dfsg-1+b2; main)

• W binary-without-manpage
  • usr/bin/dimacs-solver
  • usr/bin/dimacs-solver
  • usr/bin/dimacs-to-lgf
  • usr/bin/dimacs-to-lgf
  • usr/bin/lgf-gen
  • usr/bin/lgf-gen

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libmems.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libmems.git

• W patch-file-present-but-not-mentioned-in-series
  • libhdf5-1.10.patch
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libminc.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libminc.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libmuscle.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libmuscle.git

• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.2.0)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libncl.git
  • vcs-git https://anonscm.debian.org/debian-med/libncl.git

libncl1 (2.1.18+dfsg-2+b1; main)

• W dev-pkg-without-shlib-symlink
  • usr/lib/x86_64-linux-gnu/libncl.so.1.0.0 usr/lib/x86_64-linux-gnu/libncl.so

ncl-tools

• W binary-without-manpage
  • usr/bin/checktaxonnodes
  • usr/bin/checktaxonnodes
  • usr/bin/findunsupportededges
  • usr/bin/findunsupportededges
  • usr/bin/otTreeInspect
  • usr/bin/otTreeInspect
  • usr/bin/otsubtree
  • usr/bin/otsubtree
  • usr/bin/outdeg1count
  • usr/bin/outdeg1count

• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.2.0)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/liboptions-java.git
  • vcs-git git://anonscm.debian.org/debian-med/liboptions-java.git

• W obsolete-url-in-packaging
  • debian/copyright http://download.berlios.de/qtiplot/
  • debian/watch http://download.berlios.de/qtiplot/liborigin2-([0-9]*)\.zip
• W spelling-error-in-patch-description
  • debian/patches/01_makefile.diff unneccessary unnecessary

liborigin2-1v5-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/17/ed853f7bd68171061a2e478b0d01022c09eb8f.debug
  • usr/lib/debug/.build-id/31/c6dc1f1c3a02e1ffa50c5a55d852c3303dcc17.debug

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libpal-java.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libpal-java.git

libpal-java-doc

• W embedded-javascript-library
  • usr/share/doc/libpal-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libpal-java/api/jquery/jquery-1.10.2.js please use libjs-jquery
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.structure.css please use libjs-jquery-ui
  • usr/share/doc/libpal-java/api/jquery/jquery-ui.structure.min.css please use libjs-jquery-ui

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libpsortb.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libpsortb.git

• W debian-watch-file-should-mangle-version
  • line 8
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/librandom123.git
  • vcs-git https://anonscm.debian.org/git/debian-med/librandom123.git

• W ancient-python-version-field
  • x-python-version 2.5
• W python-foo-but-no-python3-foo
  • python-corepywrap
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/librcsb-core-wrapper.git
  • vcs-git https://anonscm.debian.org/git/debian-med/librcsb-core-wrapper.git

python-corepywrap (1.005-5+b1; main)

• W priority-extra-is-replaced-by-priority-optional

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/librdp-taxonomy-tree-java.git
  • vcs-git https://anonscm.debian.org/git/debian-med/librdp-taxonomy-tree-java.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/librg-blast-parser-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/librg-blast-parser-perl.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/librg-exception-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/librg-exception-perl.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/librg-utils-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/librg-utils-perl.git

• W useless-autoreconf-build-depends
  • dh-autoreconf
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/librostlab.git
  • vcs-git https://anonscm.debian.org/git/debian-med/librostlab.git

• W useless-autoreconf-build-depends
  • dh-autoreconf
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/librostlab-blast.git
  • vcs-git https://anonscm.debian.org/git/debian-med/librostlab-blast.git

• W spelling-error-in-patch-description
  • debian/patches/swig-3.x.patch with with (duplicate word) with
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libsbml.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libsbml.git

libsbml5-examples

• E wrong-path-for-interpreter
  • usr/share/doc/libsbml5-examples/examples/perl/addCVTerms.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/addModelHistory.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/addingEvidenceCodes_1.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/comp/flattenModel.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/convertSBML.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/echoSBML.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/extractReactions.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/fbc/convertCobraToFbc.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/fbc/convertFbcToCobra.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/printRegisteredPackages.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/printSBML.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/printsupported.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/promoteParameters.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/readSBML.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/renameSId.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/stripPackage.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/translateMath.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libsbml5-examples/examples/perl/validateSBML.pl (#!/usr/bin/env != /usr/bin/perl)

libsbml5-java-doc

• W embedded-javascript-library
  • usr/share/doc/libsbml5-java/java-api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libsbml5-java/java-api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libsbml5-java/java-api/jquery/jquery-ui.structure.css please use libjs-jquery-ui
  • usr/share/doc/libsbml5-java/java-api/jquery/jquery-ui.structure.min.css please use libjs-jquery-ui

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-science/packages/libsdsl.git
  • vcs-git https://anonscm.debian.org/git/debian-science/packages/libsdsl.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libsis-base-java.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libsis-base-java.git

libsis-base-jni

• W package-has-unnecessary-activation-of-ldconfig-trigger

• W global-files-wildcard-not-first-paragraph-in-dep5-copyright
  • (paragraph at line 12)

• W obsolete-url-in-packaging
  • debian/control http://search.cpan.org/dist/Sort-Key-Top/
  • debian/copyright http://search.cpan.org/~salva/Sort-Key-Top-0.06/lib/Sort/Key/Top.pm
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libsort-key-top-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libsort-key-top-perl.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libtabixpp.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libtabixpp.git

libtabixpp0-dbg (1.0.0-3+b1; main)

• W priority-extra-is-replaced-by-priority-optional

• W maintainer-upload-has-incorrect-version-number
  • 1.6.3-2.1

• W unnecessary-testsuite-autopkgtest-field
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libtfbs-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libtfbs-perl.git

libtfbs-perl

• W executable-not-elf-or-script
  • usr/lib/i386-linux-gnu/perl5/5.26/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle
  • usr/lib/x86_64-linux-gnu/perl5/5.26/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle
• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/TFBS::SitePair.3pm.gz
  • usr/share/man/man3/TFBS::SitePair.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/TFBS::DB::JASPAR.3pm.gz 156: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR.3pm.gz 156: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR2.3pm.gz 227: warning [p 3, 2.2i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR2.3pm.gz 227: warning [p 3, 2.2i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR4.3pm.gz 169: warning [p 2, 4.0i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR4.3pm.gz 169: warning [p 2, 4.0i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR5.3pm.gz 156: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR5.3pm.gz 156: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR6.3pm.gz 156: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR6.3pm.gz 156: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR7.3pm.gz 156: warning [p 2, 1.8i]: can't break line
  • usr/share/man/man3/TFBS::DB::JASPAR7.3pm.gz 156: warning [p 2, 1.8i]: can't break line
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/TFBS::Matrix::Alignment.3pm.gz:192
  • usr/share/man/man3/TFBS::Matrix::Alignment.3pm.gz:192
• E wrong-path-for-interpreter
  • usr/share/doc/libtfbs-perl/examples/t/01_Matrix.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/01_Matrix.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/02_Search.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/02_Search.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/03_DB_FlatFileDir.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/03_DB_FlatFileDir.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/04_DB_TRANSFAC.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/04_DB_TRANSFAC.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/05_DB_JASPAR.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/05_DB_JASPAR.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/06_SimplePFM.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/06_SimplePFM.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/07_AnnSpec.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/07_AnnSpec.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/07_Elph.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/07_Elph.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/07_Gibbs.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/07_Gibbs.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/07_MEME.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/07_MEME.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/08_DB_LocalTRANSFAC.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/08_DB_LocalTRANSFAC.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/09_Word_Consensus.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/09_Word_Consensus.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/10_Tools_SetOperations.t (#!/usr/bin/env != /usr/bin/perl)
  • usr/share/doc/libtfbs-perl/examples/t/10_Tools_SetOperations.t (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libundead.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libundead.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libvcflib.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libvcflib.git

libvcflib-tools

• W binary-without-manpage
  • usr/bin/vcfstreamsort
  • usr/bin/vcfuniq

libvcflib-tools-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/0f/9fd0826faaa330b4d697e4c1c4abb1376c4263.debug
  • usr/lib/debug/.build-id/15/3ae1c620253687fedc199ea02a79b4e0a8e950.debug
  • usr/lib/debug/.build-id/17/dd7e1798fd74b0c356796f213e236bb06b2617.debug
  • usr/lib/debug/.build-id/1f/98eddbc06ba584c3d9a81d454f7fb2b5504a68.debug
  • usr/lib/debug/.build-id/20/b6f0dea3a2da9fc85367a9b3a026a1219dc8b6.debug
  • usr/lib/debug/.build-id/24/360f069305eecc116f9aa93fdc2608e419577a.debug
  • usr/lib/debug/.build-id/25/fe29340a11fff1cb12ae9e2a2d43d28b2bfa4f.debug
  • usr/lib/debug/.build-id/26/908a853be11fa82adc3ff01838e0b1b9ebec01.debug
  • usr/lib/debug/.build-id/2d/0d57b70b747936e276270b75a949be2f25036e.debug
  • usr/lib/debug/.build-id/2e/0610e21b8714d9e726b8f1ac1ce24634fd8359.debug
  • usr/lib/debug/.build-id/2f/7a5d7b9924286ca11900464da0b4bf72767faa.debug
  • usr/lib/debug/.build-id/39/79a54625e000a1a24315b7d0a734e7ebe66086.debug
  • usr/lib/debug/.build-id/3a/bb500705a8ee6b78bbb6d78b266b51da01e39a.debug
  • usr/lib/debug/.build-id/3b/1ef07706038286ee4aa93368ef5549e0dbfdc8.debug
  • usr/lib/debug/.build-id/3c/3ced38bde17c5a80f1e69878f5959265b9a426.debug
  • usr/lib/debug/.build-id/3e/38058401fec8b152af10d84bb71c119f3ed150.debug
  • usr/lib/debug/.build-id/42/73c990a5f6a94de948008b622aa99642519f4d.debug
  • usr/lib/debug/.build-id/45/d8b419cb8d7c16683043ea52679a8189b96634.debug
  • usr/lib/debug/.build-id/46/f74cf35e534227f45d0920055bacd5a4e085ce.debug
  • usr/lib/debug/.build-id/48/8f4585304d9ce303cf995d2cbcded5bce9879e.debug
  • usr/lib/debug/.build-id/49/6142c3cd04e073ba337d258a9bb76b2be02523.debug
  • usr/lib/debug/.build-id/4b/87b05d74564ce55dc7fbbd40df6842f75e002f.debug
  • usr/lib/debug/.build-id/4d/bc33202b2825ca7bc399792c59e0a372a0bc6b.debug
  • usr/lib/debug/.build-id/4e/d0dc93e14f8f688d151a11297ee45391a1df3b.debug
  • usr/lib/debug/.build-id/51/63abaf61ddf73c180e819a9ce1b94589f9efc7.debug
  • usr/lib/debug/.build-id/56/c51daafc2e74a1ea4c3e43f4ba4f7eb03a7a9c.debug
  • usr/lib/debug/.build-id/59/30d0a81a3b603741aa640eede1787339265f80.debug
  • usr/lib/debug/.build-id/5d/4b9bad6135cbd24fc8d51e694ad74a907e55f2.debug
  • usr/lib/debug/.build-id/5d/7d43b96cc0e39c06fc7b9f77782b9498dfdd6a.debug
  • usr/lib/debug/.build-id/61/a23fa95096fd5f03da90a74fe6f18a072b4e0f.debug
  • usr/lib/debug/.build-id/63/2000105fa9046ce4ea0b4a39f5700e90f52b45.debug
  • usr/lib/debug/.build-id/63/2dec5675d60f38a3b2e77b5eccc0d0aa1be372.debug
  • usr/lib/debug/.build-id/67/e1bcd1f1930334cdd250f242a7ce5ca97a262b.debug
  • usr/lib/debug/.build-id/68/e59c0b9f9eacb592f4721a449a62df6826fe0f.debug
  • usr/lib/debug/.build-id/6a/f9718b9ab2a54814cf04d50dff4c417f567cfe.debug
  • usr/lib/debug/.build-id/6b/b7ed936bafcd1bb08cc149972a3663c233e0ed.debug
  • usr/lib/debug/.build-id/6b/eb440680b7dca65b9b80ec93fc88fdbfaa1437.debug
  • usr/lib/debug/.build-id/6c/74abff9c9bda15d6d3ceb9e2f88f78c23bbbcf.debug
  • usr/lib/debug/.build-id/71/141fe2ebb4e33f0bbf000c362f2ef689b89619.debug
  • usr/lib/debug/.build-id/73/587d6fc6089d5ef8be0a6794ce3b183ce80f63.debug
  • usr/lib/debug/.build-id/7a/55d595eed9eb6daf3b22ee9ad67b41839de531.debug
  • usr/lib/debug/.build-id/7f/35848cd79add3736a972f9b3bdb615a70b2791.debug
  • usr/lib/debug/.build-id/82/133c3e1d8e988638451d90d0b4fe52c282faad.debug
  • usr/lib/debug/.build-id/83/d743c6e691f4e0ca6799490dfa2c20ccc3a9bb.debug
  • usr/lib/debug/.build-id/8b/e82b450158c2899fe09b9ed270e6f4b18b35c3.debug
  • usr/lib/debug/.build-id/91/567272ae0457467e14f77f328df3af1fa9fcbb.debug
  • usr/lib/debug/.build-id/95/324ea755de3491151b8762470786a17ad5848d.debug
  • usr/lib/debug/.build-id/95/3f4f54e8dce9a65c7666daded66fec46044505.debug
  • usr/lib/debug/.build-id/97/589b6f76c6f7b6802de1df14569ddb732d0c09.debug
  • usr/lib/debug/.build-id/98/7a4ef796610642e355e1926e3902f0592c0a4a.debug
  • usr/lib/debug/.build-id/9a/7ebc632b8c5869e6214e70b449c9ad0a95e7fe.debug
  • usr/lib/debug/.build-id/9b/a37753fe7fbc473a001b035c67cac8c643bc20.debug
  • usr/lib/debug/.build-id/9d/a9f55906d05ca6ceacdc67434de594d092ceda.debug
  • usr/lib/debug/.build-id/9e/ab3b35f59d92ab4fae9894a741136bedb85c29.debug
  • usr/lib/debug/.build-id/a1/52acdde01543a387e2662920e78ed545328e35.debug
  • usr/lib/debug/.build-id/a3/4fcd67213ab8404ef09cd9bb6e3a1e24841ee3.debug
  • usr/lib/debug/.build-id/a5/947b05fbe7c0f576c3c7e2223798703d0e2ed5.debug
  • usr/lib/debug/.build-id/a5/b2af2ff2220f6f70b848e9e07b459fb74cd273.debug
  • usr/lib/debug/.build-id/a8/f19d4af1f5dd40be7b43154d838363362a9f9b.debug
  • usr/lib/debug/.build-id/b2/eb2880c597c780e76fbf124879a64bc4c221f3.debug
  • usr/lib/debug/.build-id/b9/1d75df9adb421f991219de4468a5604332e12b.debug
  • usr/lib/debug/.build-id/ba/8b8f7979627b463fa8b0a96d401a2eb2b92dae.debug
  • usr/lib/debug/.build-id/be/363466c45522a902a1c80ab88def8f93dbc668.debug
  • usr/lib/debug/.build-id/c9/7ff361871a61526dc6393009d56b932275f531.debug
  • usr/lib/debug/.build-id/cc/1a913a34293619ab2abe3d8051de4c6f7f531e.debug
  • usr/lib/debug/.build-id/d0/65f8b8ff304da649d37373c64bc07496514024.debug
  • usr/lib/debug/.build-id/d1/cdf530b554ebde5eebb92fa78b66228d295e52.debug
  • usr/lib/debug/.build-id/d4/557d428be33c5ce8f53e27a2650afc4bdd7a88.debug
  • usr/lib/debug/.build-id/d5/320828f602a72b7e8d93cc995e079e3a75416f.debug
  • usr/lib/debug/.build-id/d5/f0e417f4ad13bc8fe5b6c91cefbab72f155497.debug
  • usr/lib/debug/.build-id/d9/db5d0186828023b5e6ac159fc62b231e301cf4.debug
  • usr/lib/debug/.build-id/d9/ea9fd4c0755222044688ab1eb6ca3c8b6aacfd.debug
  • usr/lib/debug/.build-id/da/f29c9185efc86452a39a333c750db0b7bccd21.debug
  • usr/lib/debug/.build-id/e1/088a70c1c69746ec72b3ab4d00d0fa05a9c774.debug
  • usr/lib/debug/.build-id/e5/a60864e29d61aea036f43ed1e2171935de449d.debug
  • usr/lib/debug/.build-id/e7/477049d1644d457f4e3f8b1836c7c932fcd253.debug
  • usr/lib/debug/.build-id/e9/443b3c34c029ba8bc3ac7e0204fe8c53700988.debug
  • usr/lib/debug/.build-id/ed/be7ce8e9630efdf36dc11627564eee9e02b43a.debug
  • usr/lib/debug/.build-id/f6/90d20fc0d10df7ab73be18c2397cca005dbd66.debug
  • usr/lib/debug/.build-id/fa/2b1930a6e2250601b32724c74904a7a94613da.debug
  • usr/lib/debug/.build-id/fa/db5663a5c0e4df2043f51d99507a45b91937ae.debug
  • usr/lib/debug/.build-id/ff/f8b1e9eef0cb8727c40793a9c8d89f2397bec4.debug

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/libzeep.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libzeep.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-med/libzerg.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libzerg.git

• W debian-rules-uses-unnecessary-dh-argument
  • dh ... --parallel (line 11)
• W patch-file-present-but-not-mentioned-in-series
  • debian-changes-1.0.4-1
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/git/debian-med/libzerg-perl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/libzerg-perl.git

• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.2.0)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/libzeus-jscl-java.git
  • vcs-git git://anonscm.debian.org/pkg-java/libzeus-jscl-java.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/loki.git
  • vcs-git https://anonscm.debian.org/git/debian-med/loki.git

• W ancient-python-version-field
  • x-python-version 2.7
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/macs.git
  • vcs-git https://anonscm.debian.org/git/debian-med/macs.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mapdamage.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mapdamage.git

• W patch-file-present-but-not-mentioned-in-series
  • fix_build
  • fix_makefile
  • fix_path
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mapsembler2.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mapsembler2.git

mapsembler2

• W manpage-has-useless-whatis-entry
  • usr/share/man/man1/mapsembler2_extremities.1.gz
  • usr/share/man/man1/mapsembler2_extremities.1.gz
  • usr/share/man/man1/mapsembler2_kissreads.1.gz
  • usr/share/man/man1/mapsembler2_kissreads.1.gz
  • usr/share/man/man1/mapsembler2_kissreads_graph.1.gz
  • usr/share/man/man1/mapsembler2_kissreads_graph.1.gz
  • usr/share/man/man1/mapsembler_extend.1.gz
  • usr/share/man/man1/mapsembler_extend.1.gz
  • usr/share/man/man1/run_mapsembler2_pipeline.1.gz
  • usr/share/man/man1/run_mapsembler2_pipeline.1.gz

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/maqview.git
  • vcs-git https://anonscm.debian.org/git/debian-med/maqview.git

• W debhelper-tools-from-autotools-dev-are-deprecated
  • dh ... --with autotools_dev (line 6)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/maude.git
  • vcs-git https://anonscm.debian.org/git/debian-med/maude.git

mauve-aligner

• W bad-jar-name
  • usr/share/java/Mauve.jar
  • usr/share/java/Mauve.jar
• W binary-without-manpage
  • usr/bin/mauve
  • usr/bin/mauve
  • usr/bin/mauve-contig-mover
  • usr/bin/mauve-contig-mover

• W patch-file-present-but-not-mentioned-in-series
  • uzip_528239.patch

mc

• E missing-depends-on-sensible-utils
  • usr/bin/mc
  • usr/bin/mc

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mcl.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mcl.git

mcl

• W binary-without-manpage
  • usr/bin/clxdo
  • usr/bin/clxdo
• E wrong-path-for-interpreter
  • usr/bin/mclblastline (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/mclblastline (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/mclpipeline (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/mclpipeline (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/melting.git
  • vcs-git https://anonscm.debian.org/git/debian-med/melting.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mencal.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mencal.git

metaphlan2

• W executable-not-elf-or-script
  • usr/share/metaphlan2/__init__.py
  • usr/share/metaphlan2/_metaphlan2.py
  • usr/share/metaphlan2/plugin_setup.py

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/metaphlan2-data.git
  • vcs-git https://anonscm.debian.org/git/debian-med/metaphlan2-data.git

microbegps

• W binary-without-manpage
  • usr/bin/MicrobeGPS

chimeraslayer

• E wrong-path-for-interpreter
  • usr/lib/ChimeraSlayer/ChimeraParentSelector/CM_plotter.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraParentSelector/CPC_to_CPS.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraParentSelector/CPS_to_RENAST.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraParentSelector/run_chimeraParentSelector.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraPhyloChecker/CPS_to_CPC.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/ChimeraSlayer.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/PerlLib/NAST_to_Eco_coords.pm (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/PerlLib/TaxonomyGraph.pm (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/util/CMCS_to_treeImg.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/util/CS_add_taxonomy.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/util/breakpoint_to_profile.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/util/merge_CM_CS_outputs.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/ChimeraSlayer/util/merge_CS_n_CM_breakpoints.pl (#!/usr/bin/env != /usr/bin/perl)

microbiomeutil-data

• E wrong-path-for-interpreter
  • usr/share/doc/microbiomeutil-data/examples/NAST-iEr/testForUtils.pl (#!/usr/bin/env != /usr/bin/perl)

nast-ier

• E wrong-path-for-interpreter
  • usr/lib/NAST-iEr/PerlLib/Nuc_translator.pm (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/PerlLib/Nuc_translator.pm (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/iterative_refinement/compare_DBs.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/iterative_refinement/compare_DBs.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/iterative_refinement/iteratively_realign_db_selfsearch.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/iterative_refinement/iteratively_realign_db_selfsearch.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/iterative_refinement/quant_differences.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/iterative_refinement/quant_differences.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/run_NAST-iEr.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/run_NAST-iEr.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/util/apply_NAST_MASK.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/util/apply_NAST_MASK.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/util/mfasta_remove_allGapCols.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/util/mfasta_remove_allGapCols.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/util/mfasta_remove_gaps.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/util/mfasta_remove_gaps.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/util/show_malign_no_gap.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/util/show_malign_no_gap.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/util/show_malign_no_gap_no_identical_cols.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/NAST-iEr/util/show_malign_no_gap_no_identical_cols.pl (#!/usr/bin/env != /usr/bin/perl)

wigeon

• E wrong-path-for-interpreter
  • usr/lib/WigeoN/WigeoN.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/WigeoN/run_CM_to_WigeoN.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/WigeoN/run_WigeoN.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/WigeoN/util/all_vs_all_WigeoN.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/WigeoN/util/apply_eco_Mask.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/WigeoN/util/compute_quant_bins.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/WigeoN/util/eco_nast_freq.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/WigeoN/util/makeConservationProfile.pl (#!/usr/bin/env != /usr/bin/perl)
  • usr/lib/WigeoN/util/smooth.pl (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/minc-tools.git
  • vcs-git https://anonscm.debian.org/git/debian-med/minc-tools.git

minc-tools

• W binary-without-manpage
  • usr/bin/minchistory
  • usr/bin/minchistory
  • usr/bin/mincmorph
  • usr/bin/mincmorph
  • usr/bin/mincpik
  • usr/bin/mincpik
• E missing-depends-on-sensible-utils
  • usr/bin/mincedit
  • usr/bin/mincedit
• E wrong-path-for-interpreter
  • usr/bin/minchistory (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/minchistory (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/mincpik (#!/usr/bin/env != /usr/bin/perl)
  • usr/bin/mincpik (#!/usr/bin/env != /usr/bin/perl)

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mipe.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mipe.git

• W debian-rules-uses-unnecessary-dh-argument
  • dh ... --parallel (line 14)
• W useless-autoreconf-build-depends
  • dh-autoreconf
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mira.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mira.git

• W spelling-error-in-patch-description
  • debian/patches/Makefile.patch Desription Description
  • debian/patches/misc.patch Desription Description
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mlv-smile.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mlv-smile.git

• W ancient-python-version-field
  • x-python-version 2.5
• E source-is-missing
  • Src/Portal/cgi-bin/MobylePortal/openidform.html line length is 910 characters (>512)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mobyle.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mobyle.git

mobyle

• W executable-not-elf-or-script
  • usr/lib/cgi-bin/mobyle/mb_cgi.py
  • usr/lib/cgi-bin/mobyle/treenode.py
  • usr/share/mobyle/core/Local/Config/Execution/__init__.py
• W maintainer-script-should-not-use-recursive-chown-or-chmod
  • postinst:20
  • postinst:21

mobyle-utils

• W binary-without-manpage
  • usr/bin/mobyle-setsid
  • usr/bin/mobyle-setsid

mobyle-utils-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/12/49b5dc3c592165230395c202acedb9f81a41f5.debug
  • usr/lib/debug/.build-id/87/2c6815a5cdba5543465737e5afbc4b07a32444.debug

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mobyle-tutorials.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mobyle-tutorials.git

• W binaries-have-file-conflict
  • mothur-dbgsym mothur-mpi-dbgsym usr/lib/debug/.build-id/6f/c8033faa8bffed9c52c67e3d65eb78e296ea94.debug
  • mothur-dbgsym mothur-mpi-dbgsym usr/lib/debug/.build-id/c8/0ccba9bd10716a81bb44446bc656e17e88ced4.debug

• W spelling-error-in-patch-description
  • debian/patches/use_debian_packaged_jars.patch explicitely explicitly
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/mpj.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/mpj.git

libmpj-java

• W binary-without-manpage
  • usr/bin/mpjboot
  • usr/bin/mpjclean
  • usr/bin/mpjdaemon
  • usr/bin/mpjhalt
  • usr/bin/mpjinfo
  • usr/bin/mpjrun
  • usr/bin/mpjstatus
  • usr/bin/runmpj

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mrbayes.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mrbayes.git

mrbayes-doc

• W priority-extra-is-replaced-by-priority-optional

mrs-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/62/f3227ffdc116cc155e76990616f1dee3f71ec3.debug
  • usr/lib/debug/.build-id/f1/8db7c95078e1d23c7b1a42eef85d161e30c4cf.debug

• W spelling-error-in-patch-description
  • debian/patches/10_fixdatapath.patch explicite explicit
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/mssstest.git
  • vcs-git https://anonscm.debian.org/git/debian-med/mssstest.git

• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/pkg-java/libmtj-java.git
  • vcs-git https://anonscm.debian.org/git/pkg-java/libmtj-java.git

libmtj-java

• W bad-jar-name
  • usr/share/java/Matrix_Toolkits_for_Java-0.9.14.jar

• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.2.0)
• W vcs-deprecated-in-debian-infrastructure
  • vcs-browser http://anonscm.debian.org/gitweb/?p=debian-science/packages/muparser.git
  • vcs-git git://anonscm.debian.org/debian-science/packages/muparser.git

libmuparser-dev

• W priority-extra-is-replaced-by-priority-optional

libmuparser-doc