Lintian Reports

Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the full report, including info, experimental and overridden tags. Also see their QA overview.

abacas (1.3.1-4) §

abacas

abyss (2.1.0-1) §

abyss

acedb (4.9.39+dfsg.02-3) §

adapterremoval (2.2.2-1) §

adapterremoval

adun.app (0.81-11) §

aegean (0.15.2+dfsg-1) §

aegean-dbg

aeskulap (0.2.2b1+git20161206-4) §

aevol (5.0-1) §

aevol

aghermann (1.1.2-1) §

alien-hunter (1.7-6) §

alien-hunter

alter-sequence-alignment (1.3.3+dfsg-1) §

amap-align (2.2-6) §

amide (1.0.5-10) §

ampliconnoise (1.29-7) §

ampliconnoise-dbgsym (1.29-7+b1; main)

andi (0.12-3) §

anfo (0.98-6) §

aragorn (1.2.38-1) §

arb (6.0.6-3; non-free) §

arb-common

arden (1.0-3) §

art-nextgen-simulation-tools (20160605+dfsg-2) §

artemis (16.0.17+dfsg-3) §

artemis

artfastqgenerator (0.0.20150519-2) §

autodock-vina (1.1.2-4) §

autodock-vina-dbgsym

autodocksuite (4.2.6-5) §

autodocktools (1.5.7-3; non-free) §

baitfisher (1.0+dfsg-2) §

baitfisher

baitfisher-dbgsym

bali-phy (3.1.5+dfsg-1) §

bali-phy

bali-phy-dbgsym

ball (1.4.3~beta1-3) §

ballview (1.4.3~beta1-3+b1; main)

libball1.4 (1.4.3~beta1-3+b1; main)

libballview1.4 (1.4.3~beta1-3+b1; main)

ball (1.4.3~beta1-4)

ballview

libball1.4

libball1.4-data

libball1.4-dev

libball1.4-doc

libballview1.4

libballview1.4-dev

python-ball

python-ballview

bambamc (0.0.50-1) §

libbambamc0

bamtools (2.4.1+dfsg-2) §

bcftools (1.8-1) §

bcftools

beads (1.1.18+dfsg-1) §

beads

beagle (4.1~180127+dfsg-1) §

beast-mcmc (1.8.4+dfsg.1-3) §

beast-mcmc

libnucleotidelikelihoodcore0-dbgsym

beast2-mcmc (2.4.4+dfsg-1) §

bedops (2.4.35+dfsg-1) §

bedops

bedops-dbgsym

bedtools (2.26.0+dfsg-5) §

bedtools

bedtools-dbgsym

bedtools-test

bedtools (2.27.1+dfsg-2)

bedtools

bedtools-dbgsym

bedtools-test

bio-eagle (2.4-1) §

bio-rainbow (2.0.4-1) §

bio-rainbow (2.0.4-1+b1; main)

bio-tradis (1.3.3+dfsg-3) §

biococoa (2.2.2-3) §

libbiococoa2-dbgsym (2.2.2-3+b1; main)

biojava-live (1:1.7.1-7) §

biojava4-live (4.2.11+dfsg-1) §

biomaj3 (3.1.4-1) §

python3-biomaj3

biomaj3-cli (3.1.9-1) §

python3-biomaj3-cli

biomaj3-core (3.0.11-2) §

biomaj3-daemon (3.0.14-1) §

python3-biomaj3-daemon

biomaj3-download (3.0.14-1) §

python3-biomaj3-download

biomaj3-process (3.0.10-1) §

python3-biomaj3-process

biomaj3-user (3.0.6-1) §

python3-biomaj3-user

biomaj3-zipkin (0.2.2-1) §

bioperl (1.7.2-2) §

bioperl

libbio-perl-perl

bioperl-run (1.7.2-3) §

bioperl-run

libbio-perl-run-perl

biosquid (1.9g+cvs20050121-10) §

bitseq (0.7.5+dfsg-3) §

bitseq

blasr (5.3+0-2) §

blasr

blimps (3.9-3; non-free) §

blimps-utils

blimps-utils-dbgsym

libblimps3-dbgsym

bowtie (1.1.2-6) §

bowtie2 (2.2.5-2) §

bowtie2 (2.3.4.1-2)

bowtie2

boxshade (3.3.1-11) §

brig (0.95+dfsg-1) §

brig

bwa (0.7.17-1) §

cain (1.10+dfsg-2) §

camitk (4.0.4-2) §

canu (1.7+dfsg-1) §

cassiopee (1.0.8-1) §

cd-hit (4.6.8-1) §

cd-hit

cdbfasta (0.99-20100722-4) §

centrifuge (1.0.3~beta-1) §

centrifuge (1.0.3-1)

centrifuge

cgview (0.0.20100111-3) §

charls (1.1.0+dfsg-2) §

circlator (1.5.5-1) §

circos (0.69.6+dfsg-1) §

circos

circos-tools (0.22-2) §

clearcut (1.0.9-2) §

clearcut-dbgsym

clonalframe (1.2-8) §

clonalframeml (1.11-1) §

clonalorigin (1.0-2) §

clonalorigin

clustalo (1.2.4-1) §

clustalw (2.1+lgpl-5) §

clustalx (2.1+lgpl-6) §

cluster3 (1.53-1; non-free) §

cnvkit (0.9.3-1) §

cnvkit

codonw (1.4.4-3) §

coils (2002-6) §

concavity (0.1+dfsg.1-1) §

consensuscore (1.0.2-2) §

conservation-code (20110309.0-6) §

crac (2.5.0+dfsg-2) §

crac

ctdconverter (2.0-4) §

ctdconverter

ctdopts (1.2-3) §

ctn (3.2.0~dfsg-5) §

ctsim (6.0.2-2) §

ctsim-doc

cwltool (1.0.20180302231433-1) §

cwltool

cycle (0.3.1-13) §

daligner (1.0+20180108-1) §

dascrubber (0~20180108-1) §

dawg (1.2-1) §

dazzdb (1.0+20180115-1) §

dcm2niix (1.0.20171215-1) §

dcmtk (3.6.1~20160216-4) §

dcmtk (3.6.1~20170228-2)

dcmtk (3.6.2-3)

dcmtk (3.6.2-3+b1; main)

debian-med (3.0.1) §

med-rehabilitation

dialign (2.2.1-9) §

dialign-t (1.0.2-11) §

dicompyler (0.4.2.0-1) §

dicomscope (3.6.0-18) §

dicomscope

dindel (1.01+dfsg-4) §

discosnp (1.2.6-2) §

discosnp

disulfinder (1.2.11-7) §

dnaclust (3-5) §

dnaclust

dssp (3.0.0-2) §

dwgsim (0.1.12-1) §

dwgsim

e-mem (1.0.1-1) §

ecopcr (0.5.0+dfsg-1) §

ecopcr

edflib (1.13-1) §

edtsurf (0.2009-5) §

eigensoft (6.1.4+dfsg-1) §

eigensoft (6.1.4+dfsg-1+b2; main)

elastix (4.8-12) §

embassy-domainatrix (0.1.660-2) §

embassy-domalign (0.1.660-2) §

embassy-domsearch (1:0.1.660-2) §

embassy-domsearch

embassy-phylip (3.69.660-2; non-free) §

emboss (6.6.0+dfsg-6) §

emboss (6.6.0+dfsg-6+b1; main)

emboss-doc

emboss-lib (6.6.0+dfsg-6+b1; main)

emboss-test

jemboss

emboss-explorer (2.2.0-9) §

emboss-explorer

epcr (2.3.12-1-5) §

epigrass (2.4.7-2) §

epigrass

exonerate (2.4.0-3) §

falcon (1.8.8-1) §

falcon

fast5 (0.6.5-1) §

fast5

fasta3 (36.3.8g-1; non-free) §

fasta3

fastaq (3.17.0-1) §

fastdnaml (1.2.2-12) §

fastlink (4.1P-fix100+dfsg-1+b1; main)

fastlink-dbgsym (4.1P-fix100+dfsg-1+b1; main)

fastml (3.1-3) §

fastqtl (2.184+dfsg-5) §

fasttree (2.1.10-1) §

fastx-toolkit (0.0.14-5) §

fastx-toolkit

fermi-lite (0.1-4) §

ffindex (0.9.9.7-4) §

libffindex0 (0.9.9.7-4+b1; main)

figtree (1.4.3+dfsg-5) §

fis-gtm (6.3-003A-2) §

fis-gtm-6.3-003a (6.3-003A-2+b1; main)

fitgcp (0.0.20150429-1) §

freebayes (1.2.0-1) §

freebayes

freecontact (1.0.21-6) §

freemedforms-project (0.9.4-2) §

freemedforms-libs

fsa (1.15.9+dfsg-3) §

fsm-lite (1.0-2) §

fw4spl (14.0.0-1) §

fw4spl

g2 (0.72-7) §

libg20

galileo (0.5.1-5) §

galileo-daemon

garli (2.1-2) §

gasic (0.0.r19-3) §

gbrowse (2.56+dfsg-3) §

gbrowse

gbrowse-data

gdcm (2.8.6-3) §

gdpc (2.2.5-8) §

gemma (0.97+dfsg-3) §

gemma

genometools (1.5.10+ds-2) §

gentle (1.9+cvs20100605+dfsg1-6) §

getdata (0.2-2) §

gfapy (1.0.0+dfsg-2) §

gff2aplot (2.0-9) §

gff2aplot

giira (0.0.20140625-1) §

ginkgocadx (3.8.7-1) §

glam2 (1064-4) §

gmap (2017-11-15-1; non-free) §

libgmap1

grabix (0.1.6+git20171023-1) §

graphlan (1.1-3) §

grinder (0.5.4-4) §

gubbins (2.3.1-1) §

gwama (2.2.2+dfsg-1) §

gwyddion (2.50-2) §

harvest-tools (1.3-1) §

hhsuite (3.0~beta2+dfsg-3) §

hilive (1.1-1) §

hinge (0.5.0-2) §

hinge (0.5.0-3)

hisat2 (2.1.0-1) §

hmmer (3.1b2+dfsg-5) §

hmmer

hmmer2 (2.3.2+dfsg-5) §

libhmmer2-dev

htseq (0.5.4p3-2) §

python-htseq-doc

htseq (0.6.1p1-4)

python-htseq-doc

htseq (0.10.0-1)

htsjdk (2.14.3+dfsg-2) §

libhtsjdk-java-doc

htslib (1.7-2) §

libhts-dev

htslib (1.8-1)

libhts-dev

hunspell-en-med (0.0.20080513-2) §

hyphy (2.2.7+dfsg-1) §

hyphy-mpi (2.2.7+dfsg-1+b3; main)

hyphy-pt (2.2.7+dfsg-1+b3; main)

hyphygui (2.2.7+dfsg-1+b3; main)

idba (1.1.3-2) §

igraph (0.7.1-2.1) §

igv (2.4.6+dfsg-1; non-free) §

imagej (1.51q-1) §

imagevis3d (3.1.0-6) §

indelible (1.03-3) §

infernal (1.1.2-1) §

insighttoolkit4 (4.12.2-dfsg1-2) §

insighttoolkit4-python

libinsighttoolkit4-dev

libinsighttoolkit4.12

insighttoolkit4 (4.13.0-dfsg1-2~exp1)

libinsighttoolkit4-dev

libinsighttoolkit4.13

invesalius (3.1.1-3) §

ipig (0.0.r5-2) §

ipig

ismrmrd (1.3.3-1) §

iva (1.0.9+ds-5) §

iva

jaligner (1.0+dfsg-4) §

jam-lib (0.1.20140824-2) §

jebl2 (0.1+20140614-1) §

jellyfish (2.2.8-3) §

jellyfish1 (1.1.11-3) §

jmodeltest (2.1.10+dfsg-6) §

jmodeltest

kalign (1:2.03+20110620-4) §

khmer (2.1.2+dfsg-3) §

khmer-common

kineticstools (0.6.1+20161222-1) §

king (2.23.161103+dfsg1-2) §

king-probe (2.13.110909-2) §

kissplice (2.4.0-p1-3) §

kmc (2.3+dfsg-5) §

kmer (0~20150903+r2013-3) §

kraken (1.1-2) §

kraken-dbgsym

lamarc (2.1.10.1+dfsg-2) §

lamarc

lambda-align (1.0.3-3) §

last-align (938-1) §

last-align

lefse (1.0.8-1) §

lefse

libace-perl (1.92-7) §

libace-perl

libbio-coordinate-perl (1.7.1-2) §

libbio-das-lite-perl (2.11-6) §

libbio-graphics-perl (2.40-2) §

libbio-graphics-perl

libbio-mage-perl (20030502.3-4) §

libbio-mage-perl

libbio-mage-utils-perl (20030502.0-3) §

libbio-mage-utils-perl

libbiod (0.1.0-5) §

libbpp-core (2.4.0-3) §

libbpp-phyl (2.3.2-2) §

libbpp-phyl-omics (2.3.2-1) §

libbpp-popgen (2.3.2-1) §

libbpp-qt (2.3.2-1) §

libbpp-raa (2.3.2-1) §

libbpp-seq (2.3.2-1) §

libbpp-seq (2.4.0-2)

libbpp-seq-omics (2.3.2-1) §

libcereal (1.2.1-3) §

libchado-perl (1.31-4) §

chado-utils

libcolt-free-java (1.2.0+dfsg-5) §

libctapimkt (1.0.5~rc1-6) §

libdivsufsort (2.0.1-3) §

libfastahack (0.0+20160702-1) §

libfreecontact-perl (0.08-6) §

libgenome (1.3.1-10) §

libgenome-model-tools-music-perl (0.04-3) [Uploader] §

libgenome-perl (0.06-3) [Uploader] §

libgff (1.0-1) §

libgkarrays (2.1.0+dfsg-1) §

libgkarrays1-dbgsym

libgo-perl (0.15-6) §

libgtextutils (0.7-4) §

libgzstream (1.5+dfsg-2) §

libgzstream0-dbgsym

libhac-java (0.20110510-2) §

libhat-trie (0.1.2-1) §

libhmsbeagle (2.1.2+git20180307-1) §

libhmsbeagle1v5

libhpptools (1.1.1-1) §

libics (1.6.2-1) §

libjung-free-java (2.0.1+dfsg-1) §

libkmlframework-java (0.0.20110822.r24-2) §

liblemon (1.3.1+dfsg-1) §

liblemon-utils (1.3.1+dfsg-1+b2; main)

libmems (1.6.0+4725-4) §

libmialm (1.0.9-1) §

libminc (2.3.00-5) §

libmuscle (3.7+4565-2) §

libncl (2.1.18+dfsg-2) §

liboptions-java (0.0.20120113-2) §

libpal-java (1.5.1+dfsg-4) §

libpal-java-doc

libpsortb (1.0+dfsg-1) §

librandom123 (1.09+dfsg-1) §

librcsb-core-wrapper (1.005-5) §

python-corepywrap (1.005-5+b1; main)

librdp-taxonomy-tree-java (1.2.0-2) §

librg-blast-parser-perl (0.03-5) §

librg-exception-perl (1.0.3-3) §

librg-utils-perl (1.0.43-5) §

librostlab (1.0.20-7) §

librostlab-blast (1.0.1-8) §

libsbml (5.16.0+dfsg-2) §

libsbml5-java-doc

libsis-base-java (14.12.0-5) §

libsis-base-jni

libsis-jhdf5-java (14.12.6-2) §

libsort-key-top-perl (0.08-2) §

libssw (1.1-1) §

libtabixpp (1.0.0-3) §

libtabixpp0-dbg (1.0.0-3+b1; main)

libtecla (1.6.3-2.1) §

libtfbs-perl (0.7.1-1) §

libtfbs-perl

libundead (1.0.9-2) §

libvcflib (1.0.0~rc1+dfsg1-6) §

libvcflib-tools

libvcflib-tools-dbgsym

libvistaio (1.2.19-1) §

libvistaio14-dbg

libzeep (3.0.2-6) §

libzerg (1.0.7-9) §

libzerg-perl (1.0.4-6) §

logol (1.7.8-2) §

loki (2.4.7.4-7) §

ltrsift (1.0.2-7) §

ltrsift-dbg

macs (2.1.1.20160309-2) §

macsyfinder (1.0.5-1) §

mapdamage (2.0.8+dfsg-1) §

mapsembler2 (2.2.4+dfsg-1) §

mapsembler2

maq (0.7.1-7) §

maq

maqview (0.2.5-8) §

mash (2.0-2) §

maude (2.7-2) §

mauve-aligner (2.4.0+4734-3) §

mauve-aligner

mcl (1:14-137+ds-1) §

mcl

melting (4.3.1+dfsg-3) §

mencal (3.0-3) §

metaphlan2 (2.7.6-1) §

metaphlan2

metaphlan2-data (2.6.0+ds-3) §

metastudent (2.0.1-5) §

metastudent-data (2.0.1-3) §

metastudent-data-2 (1.0.0-3) §

mgltools-bhtree (1.5.7-2; non-free) §

mgltools-bhtree

mgltools-cadd (1.5.7-3; non-free) §

mgltools-cadd

mgltools-cmolkit (1.5.7~rc1+cvs.20140424-2; non-free) §

mgltools-cmolkit

mgltools-dejavu (1.5.7-2; non-free) §

mgltools-dejavu

mgltools-geomutils (1.5.7-2; non-free) §

mgltools-geomutils

mgltools-gle (1.5.7-2; non-free) §

mgltools-gle

mgltools-mglutil (1.5.7-3; non-free) §

mgltools-mglutil

mgltools-molkit (1.5.7-2; non-free) §

mgltools-molkit

mgltools-networkeditor (1.5.7-3; non-free) §

mgltools-networkeditor

mgltools-opengltk (1.5.7-2; non-free) §

mgltools-opengltk

mgltools-pmv (1.5.7-2; non-free) §

mgltools-pmv

mgltools-pyautodock (1.5.7-2; non-free) §

mgltools-pyautodock

mgltools-pybabel (1.5.7-2; non-free) §

mgltools-pybabel

mgltools-pyglf (1.5.7-2; non-free) §

mgltools-pyglf

mgltools-scenario2 (1.5.7-2; non-free) §

mgltools-scenario2

mgltools-sff (1.5.7-2; non-free) §

mgltools-sff

mgltools-support (1.5.7-2; non-free) §

mgltools-support

mgltools-symserv (1.5.7-2; non-free) §

mgltools-symserv

mgltools-utpackages (1.5.7-2; non-free) §

mgltools-utpackages

mgltools-viewerframework (1.5.7-2; non-free) §

mgltools-vision (1.5.7+dfsg-1; non-free) §

mgltools-vision

mgltools-visionlibraries (1.5.7-2; non-free) §

mgltools-visionlibraries

mgltools-volume (1.5.7-2; non-free) §

mgltools-volume

mgltools-webservices (1.5.7-2; non-free) §

mgltools-webservices

mhap (2.1.3+dfsg-1) §

mia (2.4.6-2) §

mialmpick (0.2.14-1) §

miaviewit (1.0.5-1) §

microbegps (1.0.0-2) §

microbegps

microbiomeutil (20101212+dfsg1-1) §

minc-tools (2.3.00+dfsg-2) §

minc-tools

minia (1.6906-2) §

minia

miniasm (0.2+dfsg-2) §

minimap (0.2-3) §

mipe (1.1-6) §

mira (4.9.6-3) §

mlv-smile (1.47-5) §

mobyle (1.5.5+dfsg-5) §

mobyle

mobyle-utils

mobyle-utils-dbgsym

mobyle-programs (5.1.2-2) §

mobyle-programs

mobyle-tutorials (1.5.0-3) §

mothur (1.40.3-1) §

mrbayes (3.2.6+dfsg-2) §

mrbayes-doc

mriconvert (1:2.1.0-2) §

mrs (6.0.5+dfsg-6) §

mrs-dbgsym

mssstest (3.0-6; non-free) §

murasaki (1.68.6-6) §

muscle (1:3.8.31+dfsg-3) §

mypy (0.610-1) §

mypy

nanook (1.26+dfsg-1) §

nanopolish (0.9.0-1) §

ncbi-blast+ (2.7.1-1) §

ncbi-blast+ (2.7.1-1+b1; main)

ncbi-blast+-legacy

ncbi-entrez-direct (7.40.20170928+ds-1) §

ncbi-entrez-direct

ncbi-seg (0.0.20000620-4) §

ncbi-tools6 (6.1.20170106-2) §

libncbi6

ncbi-tools-x11

ncbi-vdb (2.9.0-1+dfsg-2) §

neobio (0.0.20030929-3) §

ngs-sdk (2.9.0-1) §

libngs-sdk2-dbgsym

njplot (2.4-7) §

njplot-dbgsym

norsnet (1.0.17-3) §

norsp (1.0.6-3) §

nutsqlite (1.9.9.6-1) §

nutsqlite

odil (0.9.2-1) §

opencfu (3.9.0-2) §

opencfu (3.9.0-2+b1; main)

openslide (3.4.1+dfsg-2) §

libopenslide-dev

openslide-python (1.1.1-3) §

python-openslide-examples

python3-openslide

opensurgsim (0.7.0-7) §

libopensurgsim

orthanc-dicomweb (0.5+dfsg-2) §

orthanc-dicomweb

orthanc-imagej (1.1+dfsg-2) §

orthanc-postgresql (2.1-2) §

orthanc-postgresql

orthanc-webviewer (2.4-2) §

orthanc-webviewer

orthanc-wsi (0.5-2) §

orthanc-wsi (0.5-2+b1; main)

pal2nal (14.1-1) §

pal2nal

paml (4.9h+dfsg-1) §

paml

papyrus (3.7.1+dfsg-2) §

paraclu (9-1) §

paraclu (9-1+b2; main)

paraclu-dbgsym (9-1+b2; main)

parafly (0.0.2013.01.21-3) §

parsinsert (1.04-3) §

parsnp (1.2+dfsg-3) §

patman (1.2.2+dfsg-4) §

pbalign (0.3.0-1) §

pbalign

pbbam (0.7.4+ds-1) §

pbbamtools (0.7.4+ds-1+b1; main)

pbbarcode (0.8.0-4) §

pbbarcode

pbcopper (0.0.1+20161202-2) §

pbdagcon (0.3+20161121+ds-1) §

pbdagcon (0.3+20161121+ds-1+b1; main)

pbgenomicconsensus (2.1.0-1) §

pbh5tools (0.8.0+dfsg-5) §

pbseqlib (0~20160705-1) §

pbseqlib (0~20161219-2)

libblasr

libpbdata

libpbihdf

pbsim (1.0.3-3) §

pbsuite (15.8.24+dfsg-2) §

pcalendar (3.4.1-2) §

pdb2pqr (2.1.1+dfsg-2) §

pdb2pqr-doc

perlprimer (1.2.3-1) §

perm (0.4.0-3) §

pftools (3+dfsg-2) §

phast (1.4+dfsg-1) §

phast

phipack (0.0.20160614-2) §

phipack

phybin (0.3-1) §

phybin (0.3-1+b1; main)

phybin-dbgsym

phylip (1:3.696+dfsg-5) §

phylip

phyml (3:3.3.20180214+dfsg-1) §

phyml

phyml-dbgsym

phyutility (2.7.3+dfsg-1) §

picard-tools (2.8.1+dfsg-4) §

libpicard-java-doc

piler (0~20140707-1) §

pirs (2.0.2+dfsg-6) §

pirs

pirs-dbgsym

pixelmed (20150917-2) §

pixelmed-apps

pixelmed-www

pixelmed-codec (20170512-1) §

libpixelmed-codec-java

placnet (1.03-2) §

plasmidomics (0.2.0-6) §

plast (2.3.1+dfsg-4) §

plastimatch (1.7.0+dfsg.1-1) §

poa (2.0+20060928-6) §

pondus (0.8.0-3) §

populations (1.2.33+svn0120106+dfsg-1) §

poretools (0.6.0+dfsg-2) §

pp-popularity-contest (1.0.6-3) §

predictnls (1.0.20-4) §

predictprotein (1.1.07-3) §

proalign (0.603-3) §

probabel (0.4.5-5) §

probalign (1.4-7) §

probcons (1.12-11) §

probcons

probcons-extra

proda (1.0-11) §

profbval (1.0.22-5) §

profisis (1.0.11-4) §

profnet (1.0.22-5) §

profphd (1.0.42-2) §

profphd-utils (1.0.10-4) §

proftmb (1.1.12-7) §

progressivemauve (1.2.0+4713+dfsg-1) §

proteinortho (5.16+dfsg-1) §

proteinortho-dbgsym

prottest (3.4.2+dfsg-2) §

psortb (3.0.5+dfsg-2) §

psortb

pvrg-jpeg (1.2.1+dfsg1-5) §

pycorrfit (1.0.1+dfsg-2) §

pymia (0.1.9-1) §

pynast (1.2.2-3) §

pyqi (0.3.2+dfsg-2) §

pyscanfcs (0.2.3+ds-1) §

python-avro (1.8.2+dfsg-1) §

python-bd2k (1.14~alpha1.48-1) §

python-biom-format (2.1.6+dfsg-2) §

biom-format-tools

python-biom-format

python3-biom-format

python-biopython (1.71+dfsg-1) §

python-bx (0.8.1-2) §

python-bx-tools

python3-bx-tools

python-bz2file (0.98-1) §

python-bz2file

python-clips (1.0.7.348+clips-3) §

python-cobra (0.5.9-1) §

python3-cobra (0.5.9-1+b1; main)

python-cogent (1.9-12) §

python-csb (1.2.5+dfsg-3) §

python-cutadapt (1.16-2) §

python-dictobj (0.4-1.2) §

python-easydev (0.9.35+dfsg-2) §

python-easydev

python3-easydev

python-fitbit (0.3.0-3) §

python-freecontact (1.1-2) §

python-intervaltree-bio (1.0.1-1) §

python-intervaltree-bio

python-matplotlib-venn (0.11.5-4) §

python-mne (0.15.2+dfsg-2) §

python-mne

python-multipletau (0.1.9+ds-1) §

python-pbcommand (0.5.3-1) §

python-pbcore (1.2.11+dfsg-1) §

python-pyfaidx (0.5.4-1) §

python-pyfaidx-examples

python-pyflow (1.1.20-1) §

python-pymummer (0.10.3-1) §

python-pysam (0.12.0.1+ds-4) §

python-pysam (0.14+ds-2)

python-pyvcf (0.6.8-1) §

python-pyvcf-examples

pyvcf

python-qcli (0.1.1-3) §

python-rdflib-jsonld (0.4.0-3) §

python-ruffus (2.6.3+dfsg-5) §

python-ruffus-doc

python-schema-salad (2.6.20171201034858-3) §

python-screed (1.0-2) §

python3-screed

python-skbio (0.5.2-1) §

python-skbio-doc

python-sqlsoup (0.9.1-3) §

python-treetime (0.2.4-1) §

python-xopen (0.3.3-1) §

python3-typed-ast (1.1.0-1) §

qcumber (1.0.14+dfsg-1) §

qcumber

qiime (1.9.1+dfsg-1) §

qiime

qiime-doc

qiime (1.9.1+dfsg-2)

qiime

qiime-dbgsym

qiime-doc

qrisk2 (0.1.20150729-2) §

qsopt-ex (2.5.10.3-1) §

qtltools (1.1+dfsg-2) §

quorum (1.1.1-1) §

raccoon (1.0b-3; contrib) §

radiant (2.7+dfsg-1) §

radiant

rambo-k (1.21+dfsg-1) §

rapmap (0.5.0+dfsg-3) §

rapmap

raster3d (3.0-3-3) §

rate4site (3.0.0-5) §

raxml (8.2.12+dfsg-1) §

raxml

raxml-dbgsym

ray (2.3.1-6) §

ray

rdp-alignment (1.2.0-3) §

rdp-classifier (2.10.2-2) §

rdp-readseq (2.0.2-3) §

readseq (1-12) §

reapr (1.0.18+dfsg-3) §

relion (1.4+dfsg-4) §

repeatmasker-recon (1.08-3) §

repeatmasker-recon (1.08-3+b1; main)

reprof (1.0.1-5) §

rnahybrid (2.1.2-4) §

roary (3.12.0+dfsg-1) §

roary

roguenarok (1.0-1) §

rsem (1.3.0+dfsg-2) §

rsem

rtax (0.984-5) §

ruby-rgfa (1.3.1-1) §

runcircos-gui (0.0+20160403-1) §

runcircos-gui

saint (2.5.0+dfsg-2) §

salmon (0.7.2+ds1-3) §

sambamba (0.6.7-2) §

samtools (1.7-2) §

samtools (1.7-2+b1; main)

samtools (1.8-1)

samtools

samtools-legacy (0.1.19-2) §

sbmltoolbox (4.1.0-3) §

scrm (1.7.2-1) §

scythe (0.994-4) §

seer (1.1.4-1) §

seer (1.1.4-1+b1; main)

seq-gen (1.3.4-1; non-free) §

seqan (1.4.2+dfsg-2) §

seqan2 (2.4.0+dfsg-8) §

libseqan2-dev

seqan-apps

seqmagick (0.7.0-1) §

seqmagick

seqprep (1.3.2-2) §

seqtk (1.2-2) §

seqtools (4.44.1+dfsg-2) §

sga (0.10.14-2) §

sga-dbgsym

sga (0.10.15-3)

sga (0.10.15-3+b1; main)

sga-dbgsym (0.10.15-3+b1; main)

sibsim4 (0.20-3) §

sickle (1.33-2) §

sift (4.0.3b-6; non-free) §

sift

sigma-align (1.1.3-5) §

sim4 (0.0.20121010-4) §

sitplus (1.0.3-5.1) §

smalr (1.1+dfsg-1) §

smalr

smalt (0.7.6-7) §

smrtanalysis (0~20161126) §

snakemake (4.3.1-1) §

snakemake

snap (2013-11-29-9) §

snap

snap-aligner (1.0~beta.18+dfsg-2) §

snap-aligner-dbgsym

sniffles (1.0.8+ds-1) §

sniffles (1.0.8+ds-1+b1; main)

snpomatic (1.0-3) §

soapaligner (2.20-1) §

soapaligner-dbgsym

soapsnp (1.03-1) §

soapsnp

socket++ (1.12.13-9) §

sofa-framework (1.0~beta4-12) §

solvate (1.0-2; non-free) §

sortmerna (2.1-2) §

spaced (1.0.2+dfsg-1) §

spades (3.11.1+dfsg-1) §

sprai (0.9.9.23+dfsg-1) §

spread-phy (1.0.7+dfsg-2) §

squizz (0.99d+dfsg-1) §

squizz

sra-sdk (2.8.2-5+dfsg-1) §

sra-toolkit

srf (0.1+dfsg-5) §

srst2 (0.2.0-5) §

ssake (4.0-1) §

sspace (2.1.1+dfsg-3) §

stacks (2.0Beta9+dfsg-1) §

stacks

stacks-web

staden (2.0.0+b11-2) §

staden (2.0.0+b11-2+b2; main)

staden-io-lib (1.14.9-4) §

libstaden-read-dev

staden-io-lib-examples

staden-io-lib-utils

suitename (0.3.070628-1) §

suitename-dbgsym (0.3.070628-1+b1; main)

sumaclust (1.0.31-1) §

sumaclust-dbgsym

sumatra (1.0.31-1) §

sumatra-dbgsym

surankco (0.0.r5+dfsg-1) §

swarm-cluster (2.2.2+dfsg-2) §

swarm

swissknife (1.75-1) §

libswiss-perl

t-coffee (11.00.8cbe486-6) §

tantan (13-4) §

theseus (3.3.0-6) §

theseus

tifffile (20170929-1) §

tm-align (20170708+dfsg-1) §

tnseq-transit (2.1.2-1) §

tnseq-transit

tophat (2.1.1+dfsg1-1) §

tophat

toppred (1.10-4) §

toppred

transdecoder (5.0.1-1) §

transrate-tools (1.0.0-1) §

transrate-tools-dbgsym (1.0.0-1+b2; main)

tree-puzzle (5.2-10) §

treeview (1.1.6.4+dfsg1-3) §

treeviewx (0.5.1+20100823-5) §

trinityrnaseq (2.5.1+dfsg-2) §

trinityrnaseq

trinityrnaseq-dbgsym

trnascan-se (2.0.0-1; non-free) §

trnascan-se

tvc (5.0.3+dfsg-2) §

tvc (5.0.3+dfsg-2+b1; main)

uc-echo (1.12-9) §

uc-echo (1.12-9+b1; main)

ugene (1.25.0+dfsg-1; non-free) §

ugene

varna (3-93+ds-1) §

varscan (2.4.3+dfsg-1; non-free) §

vcftools (0.1.15-1) §

velvet (1.2.10+dfsg1-3) §

velvet-dbgsym (1.2.10+dfsg1-3+b1; main)

velvet (1.2.10+dfsg1-4)

velvet-dbgsym

velvet-long

velvetoptimiser (2.2.6-1) §

visionegg (1.2.1-4) §

volpack (1.0b3-6) §

libvolpack1-dev

vsearch (2.8.0-1) §

vsearch

vtk-dicom (0.7.10-1) §

python-vtk-dicom (0.7.10-1+b3; main)

wise (2.4.1-20) §

wise-data

xmedcon (0.15.0-1) §

libmdc2

libmdc2-dev

xmedcon (0.15.0+dfsg-2)

libmdc-dev

medcon

xmedcon

yaggo (1.5.10-1) §

zalign (0.9.1-3) §