Lintian Reports

Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the full report, including info, experimental and overridden tags. Also see their QA overview.

abacas (1.3.1-5) §

abacas

aeskulap (0.2.2-beta2+git20190406.ef77f01-1) §

aevol (5.0+ds-1) §

aevol

alien-hunter (1.7-7) §

alien-hunter

arb (6.0.6-4; non-free) §

arb-common

baitfisher (1.2.7+git20180107.e92dbf2+dfsg-1) §

baitfisher

ball (1.5.0+git20180813.37fc53c-3) §

ballview

libball1.5

libball1.5-dev

libballview1.5

libballview1.5-dev

barrnap (0.9+dfsg-1) §

barrnap

bedtools (2.27.1+dfsg-4) §

bedtools-test

biobambam2 (2.0.95-1) §

biobambam2

biococoa (2.2.2-4) §

biojava-live (1:1.7.1-8) §

libbiojava-java-doc

biojava4-live (4.2.12+dfsg-2) §

biomaj3-zipkin (0.2.2-1) §

biosyntax (1.0.0b-1) §

bitseq (0.7.5+dfsg-5) §

bitseq

brig (0.95+dfsg-2) §

brig

cct (20170919+dfsg-1) §

cct

cd-hit (4.8.1-2) §

cd-hit

centrifuge (1.0.3-3) §

centrifuge

cfflib (2.0.5-3) §

changeo (0.4.6-1) §

changeo

circos (0.69.9+dfsg-1) §

circos

clonalorigin (1.0-3) §

clonalorigin

ctdconverter (2.1-1) §

ctdconverter

ctdopts (1.2-3) §

ctsim (6.0.2-3) §

ctsim-doc

cwltool (1.0.20190915164430+dfsg-1) §

cwltool

dialign-t (1.0.2-12) §

dialign-tx

dicomscope (3.6.0-20) §

dicomscope

dnaclust (3-7) §

dnaclust

dwgsim (0.1.12-3) §

dwgsim

ecopcr (1.0.1+dfsg-1) §

ecopcr

eigensoft (7.2.1+dfsg-1) §

eigensoft

emboss (6.6.0+dfsg-7) §

emboss (6.6.0+dfsg-7+b1; main)

emboss-doc

emboss-lib (6.6.0+dfsg-7+b1; main)

emboss-test

jemboss

emboss-explorer (2.2.0-10) §

emboss-explorer

estscan (3.0.3-3) §

estscan

falcon (1.8.8-1) §

falcon

fastlink

ffindex (0.9.9.9-3) §

libffindex0

fis-gtm (6.3-007-1) §

fis-gtm-6.3-007 (6.3-007-1+b1; main)

freemedforms-project (0.9.4-2) §

freemedforms-libs (0.9.4-2+b2; main)

fsm-lite (1.0-3) §

galileo (0.5.1-6) §

galileo-daemon

gemma (0.98.1+dfsg-1) §

gemma

genometester (4.0+git20180508.a9c14a6+dfsg-1) §

genometester

getdata (0.2-3) §

getdata

ghmm (0.9~rc3-2) §

ghmm

gwama (2.2.2+dfsg-2) §

hhsuite (3.2.0-2) §

hhsuite

hmmer2 (2.3.2+dfsg-6) §

libhmmer2-dev

htsjdk (2.18.2+dfsg-2) §

libhtsjdk-java-doc

igor (1.3.0+dfsg-1) §

igor

insighttoolkit4 (4.12.2-dfsg1-4) §

libinsighttoolkit4.12 (4.12.2-dfsg1-4+b2; main)

insighttoolkit4 (4.12.2-dfsg1-4.1)

libinsighttoolkit4.12

invesalius (3.1.99992-3) §

invesalius

invesalius (3.1.99993-1)

ipig (0.0.r5-3) §

ipig

ismrmrd (1.4.0-1) §

libismrmrd1.3

jam-lib (0.1.git20180106.740247a+dfsg-1) §

libjam-java-doc

jebl2 (0.1+git20180418.653eb83-1) §

libjebl2-java-doc

jheatchart (0.6-1) §

libjheatchart-java-doc

jmodeltest (2.1.10+dfsg-7) §

jmodeltest

khmer (2.1.2+dfsg-6) §

kineticstools (0.6.1+git20180425.27a1878-2) §

lagan (2.0-5) §

lamarc (2.1.10.1+dfsg-4) §

lamarc

libace-perl (1.92-8) §

libace-perl (1.92-8+b2; main)

libbio-mage-perl (20030502.3-5) §

libbio-mage-perl

libbio-mage-utils-perl (20030502.0-4) §

libbio-mage-utils-perl

libbpp-phyl-omics (2.4.1-1) §

libbpp-phyl-omics3

libcolt-free-java (1.2.0+dfsg-7) §

libcolt-free-java-doc

libgenome (1.3.11+svn20110227.4616-2) §

libgenome-perl (0.06-5) [Uploader] §

libgenome-perl

libhac-java (0.20110510-3) §

libhac-java-doc

libjung-free-java (2.0.1+dfsg-1) §

libjung-free-java-doc

liblemon (1.3.1+dfsg-2) §

liblemon-dev

liblemon-utils

libmaus2 (2.0.611-1) §

libmems (1.6.0+4725-8) §

libmems-dev (1.6.0+4725-8+b1; main)

libmialm (1.0.9-2) §

libminc (2.4.03-2) §

libmuscle (3.7+4565-6) §

libmuscle1

liboptions-java (0.0.20120113-3) §

liboptions-java-doc

libpal-java (1.5.1+dfsg-5) §

libpal-java-doc

librandom123 (1.09+dfsg-2) §

libsbml (5.17.2+dfsg-3) §

libsbml5-java (5.17.2+dfsg-3+b3; main)

libsis-base-java (18.09~pre1+git20180827.fe4953e+dfsg-1) §

libsis-base-java

libsis-base-jni

libsis-jhdf5-java (14.12.6-2) §

libsmithwaterman (0.0+git20160702.2610e25-7) §

libsmithwaterman-dev

libtecla (1.6.3-2.1) §

libtfbs-perl (0.7.1-3) §

libtfbs-perl (0.7.1-3+b1; main)

libvistaio (1.2.19-2) §

lucy (1.20-1) §

lucy

mash (2.2.2+dfsg-1) §

maude (2.7-2) §

mauve-aligner (2.4.0+4736-2) §

mauve-aligner

mcl (1:14-137+ds-4) §

mcl

metastudent-data (2.0.1-4) §

mgltools-bhtree (1.5.7-3; non-free) §

mgltools-bhtree

mgltools-cmolkit (1.5.7~rc1+cvs.20140424-2; non-free) §

mgltools-cmolkit

mgltools-dejavu (1.5.7-3; non-free) §

mgltools-dejavu

mgltools-geomutils (1.5.7-3; non-free) §

mgltools-geomutils

mgltools-gle (1.5.7-3; non-free) §

mgltools-gle

mgltools-opengltk (1.5.7-3; non-free) §

mgltools-opengltk

mgltools-pybabel (1.5.7-3; non-free) §

mgltools-pybabel

mgltools-pyglf (1.5.7-3; non-free) §

mgltools-pyglf

mgltools-sff (1.5.7-3; non-free) §

mgltools-sff

mia (2.4.6-5) §

mia-doctools

mialmpick (0.2.14-2) §

miaviewit (1.0.5-2) §

libmiaviewit-dev

microbegps (1.0.0-5) §

microbegps

mira (4.9.6-4) §

mrbayes (3.2.6+dfsg-2) §

mrbayes-doc

ncbi-entrez-direct (10.9.20190219+ds-1) §

ncbi-entrez-direct (10.9.20190219+ds-1+b10; main)

ncbi-tools6 (6.1.20170106+dfsg1-7) §

libncbi6

libvibrant6-dev

nutsqlite (2.0.6-1) §

nutsqlite

opencfu (3.9.0-3) §

opencfu

openslide (3.4.1+dfsg-4) §

libopenslide-dev

opensurgsim (0.7.0-8) §

libopensurgsim

orthanc (1.5.8+dfsg-2) §

orthanc

orthanc-mysql (2.0-2) §

orthanc-mysql

orthanc-postgresql (3.2-1) §

orthanc-postgresql

orthanc-wsi (0.6-2) §

orthanc-wsi

paraclu (9-2) §

paraclu

pbalign (0.3.2-1) §

pbbarcode (0.8.0-5) §

pbbarcode

pbdagcon (0.3+git20161121.0000000+ds-1.1) §

pbdagcon (0.3+git20161121.0000000+ds-1.1+b1; main)

pbgenomicconsensus (2.3.2-5) §

pbgenomicconsensus

pbh5tools (0.8.0+git20170929.58d54ff+dfsg-1) §

pbseqlib (5.3.1+dfsg-2.1) §

libpbdata (5.3.1+dfsg-2.1+b1; main)

libpbihdf (5.3.1+dfsg-2.1+b1; main)

pbsuite (15.8.24+dfsg-3) §

pdb2pqr (2.1.1+dfsg-5) §

pdb2pqr-doc

phast (1.5+dfsg-1) §

phast

phipack (0.0.20160614-3) §

phipack

phylip (1:3.697+dfsg-1) §

phylip

picard-tools (2.18.25+dfsg-2) §

libpicard-java-doc

pirs (2.0.2+dfsg-8) §

pirs

pixelmed (20150917+git20151209.36f3174+dfsg-2) §

libpixelmed-java-doc

pixelmed-apps

pixelmed-www

pixelmed-codec (20170512-2) §

libpixelmed-codec-java

pybel (0.13.1-1) §

python3-pybel

pymia (0.1.9-2.1) §

python-bz2file (0.98-2) §

python-cogent (1.9-14) §

python-pbcommand (1.1.1-1) §

python-pbcore (1.6.5+dfsg-1) §

python-pyfaidx (0.5.5.2-2) §

python-pyfaidx-examples

python-pyvcf (0.6.8+git20170215.476169c-2) §

pyvcf

python-screed (1.0-3) §

python3-screed

qcumber (1.0.14+dfsg-1) §

qcumber

radiant (2.7.1+dfsg-1) §

radiant

rdp-alignment (1.2.0-5) §

rdp-alignment

rdp-classifier (2.10.2-4) §

rdp-classifier

rdp-classifier-doc

relion (1.4+dfsg-4) §

reprof (1.0.1-7) §

rtax (0.984-6) §

rtax

sambamba (0.6.7-2) §

scoary (1.6.16-2) §

scoary

seer (1.1.4-2) §

seer (1.1.4-2+b2; main)

seqan (1.4.2+dfsg-3) §

seqan-dev

seqan2 (2.4.0+dfsg-11) §

libseqan2-dev

sift (4.0.3b-6; non-free) §

sift

smalr (1.1+dfsg-2) §

smalr

snap (2013-11-29-9) §

snap

soapsnp (1.03-3) §

soapsnp

sofa-framework (1.0~beta4-12) §

solvate (1.0-2; non-free) §

spread-phy (1.0.7+dfsg-2) §

squizz (0.99d+dfsg-2) §

squizz

sra-sdk (2.9.3+dfsg-1) §

sra-toolkit (2.9.3+dfsg-1+b1; main)

staden (2.0.0+b11-4) §

staden

staden-io-lib (1.14.11-6) §

libstaden-read-dev

staden-io-lib-examples

staden-io-lib-utils

sweed (3.2.1+dfsg-1) §

swissknife (1.75-1) §

libswiss-perl

theseus (3.3.0-8) §

theseus

tophat (2.1.1+dfsg1-2) §

tophat (2.1.1+dfsg1-2+b1; main)

toppred (1.10-7) §

toppred

trace2dbest (3.0.1-1) §

trace2dbest

tracetuner (3.0.6~beta+dfsg-2) §

tracetuner

tree-puzzle (5.2-11) §

trinityrnaseq (2.6.6+dfsg-6) §

trinityrnaseq-examples

tvc (5.0.3+git20151221.80e144e+dfsg-2) §

tvc

uc-echo (1.12-12) §

uc-echo

unanimity (3.3.0+dfsg-2.1) §

velvetoptimiser (2.2.6-2) §

velvetoptimiser

virulencefinder (2.0.3+git20190809.dde157a-1) §

virulencefinder

volpack (1.0b3-7) §

libvolpack1-dev

wise (2.4.1-21) §

wise-data

xmedcon (0.16.1+dfsg-1) §

libmdc-dev

medcon

xmedcon