Lintian Reports

Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the full report, including info, experimental and overridden tags. Also see their QA overview.

abacas (1.3.1-5) §

abacas

abyss (2.1.5-1) §

abyss

adapterremoval (2.2.2-2) §

adapterremoval

adun.app (0.81-11) §

aeskulap (0.2.2-beta2+git20180219.8787e95-1) §

aeskulap

aeskulap-dbgsym

aevol (5.0-2) §

aevol (5.0-2+b1; main)

alien-hunter (1.7-7) §

alien-hunter

ampliconnoise (1.29-8) §

ampliconnoise-dbgsym

arb (6.0.6-4; non-free) §

arb-common

ariba (2.13.1+ds-1) §

ariba (2.13.1+ds-1+b1; main)

baitfisher (1.2.7+git20180107.e92dbf2+dfsg-1) §

baitfisher

bali-phy (3.3+dfsg-1) §

bali-phy (3.3+dfsg-1+b1; main)

bali-phy-dbgsym (3.3+dfsg-1+b1; main)

ball (1.4.3~beta1-3) §

ballview (1.4.3~beta1-3+b1; main)

libball1.4 (1.4.3~beta1-3+b1; main)

libballview1.4 (1.4.3~beta1-3+b1; main)

ball (1.4.3~beta1-4)

ballview

libball1.4

libball1.4-data

libball1.4-dev

libball1.4-doc

libballview1.4

libballview1.4-dev

python-ball

python-ballview

barrnap (0.9+dfsg-1) §

barrnap

bcftools (1.9-1) §

bcftools

beads (1.1.18+dfsg-2) §

beads

beast-mcmc (1.8.4+dfsg.1-3) §

beast-mcmc

libnucleotidelikelihoodcore0-dbgsym

bedops (2.4.35+dfsg-1) §

bedops

bedops-dbgsym

bedtools (2.26.0+dfsg-5) §

bedtools

bedtools-dbgsym

bedtools-test

bedtools (2.27.1+dfsg-2)

bedtools

bedtools-dbgsym

bedtools-test

bio-rainbow (2.0.4+dfsg-1) §

bio-rainbow

bio-tradis (1.4.1+dfsg-1) §

bio-tradis

biococoa (2.2.2-4) §

libbiococoa2-dbgsym

biojava-live (1:1.7.1-8) §

libbiojava-java-doc

biojava4-live (4.2.11+dfsg-1) §

biomaj3 (3.1.6-1) §

python3-biomaj3

biomaj3-cli (3.1.10-1) §

python3-biomaj3-cli

biomaj3-daemon (3.0.17-1) §

python3-biomaj3-daemon

biomaj3-download (3.0.18-1) §

python3-biomaj3-download

biomaj3-process (3.0.11-1) §

python3-biomaj3-process

biomaj3-user (3.0.6-1) §

python3-biomaj3-user

biomaj3-zipkin (0.2.2-1) §

bioperl (1.7.2-3) §

bioperl

libbio-perl-perl

bioperl-run (1.7.2-4) §

libbio-perl-run-perl

bitseq (0.7.5+dfsg-3) §

bitseq

blasr (5.3+0-2) §

blasr

blimps (3.9-3; non-free) §

blimps-utils

blimps-utils-dbgsym

libblimps3-dbgsym

bowtie (1.1.2-6) §

bowtie2 (2.2.5-2) §

bowtie2-examples

brig (0.95+dfsg-2) §

brig

cassiopee (1.0.9-1) §

cct (20170919+dfsg-1) §

cct

cd-hit (4.6.8-2) §

cd-hit

centrifuge (1.0.3~beta-1) §

centrifuge (1.0.3-1)

centrifuge

cfflib (2.0.5-3) §

circos (0.69.6+dfsg-2) §

circos

clearcut (1.0.9-3) §

clearcut-dbgsym

clonalorigin (1.0-2) §

clonalorigin

cnvkit (0.9.5-1) §

cnvkit

crac (2.5.0+dfsg-3) §

crac

ctdconverter (2.0-4) §

ctdconverter

ctdopts (1.2-3) §

ctsim (6.0.2-2) §

ctsim-doc

cwltool (1.0.20180302231433-1) §

cwltool

cycle (0.3.1-13) §

cyvcf2 (0.10.0+git20180727-2) §

python3-cyvcf2

dcmtk (3.6.1~20160216-4) §

dcmtk (3.6.1~20170228-2)

dcmtk (3.6.2-3)

dcmtk (3.6.2-3+b2; main)

dcmtk (3.6.3-1~exp1)

dcmtk

debian-med (3.1) §

dialign-t (1.0.2-12) §

dialign-tx

dicompyler (0.4.2.0-1) §

dicomscope (3.6.0-19) §

dicomscope

discosnp (1.2.6-2) §

discosnp

dnaclust (3-6) §

dnaclust (3-6+b1; main)

dwgsim (0.1.12-1) §

dwgsim

e-mem (1.0.1-1) §

ecopcr (1.0.0+dfsg-1) §

ecopcr

eigensoft (7.2.1+dfsg-1) §

eigensoft

elastix (4.8-12) §

embassy-domsearch (1:0.1.660-2) §

embassy-domsearch

emboss (6.6.0+dfsg-7) §

emboss

emboss-doc

emboss-lib

emboss-test

jemboss

emboss-explorer (2.2.0-10) §

emboss-explorer

epigrass (2.4.7-2) §

epigrass

estscan (3.0.3-2) §

estscan

exonerate (2.4.0-3) §

falcon (1.8.8-1) §

falcon

fast5 (0.6.5-2) §

fast5

fasta3 (36.3.8g-1; non-free) §

fasta3

fastlink

fastlink-dbgsym

ffindex (0.9.9.7+soedinglab+git20180802.74550c8-1) §

ffindex

fis-gtm (6.3-003A-2) §

fis-gtm-6.3-003a (6.3-003A-2+b1; main)

freebayes (1.2.0-2) §

freebayes

freemedforms-project (0.9.4-2) §

freemedforms-libs

fsm-lite (1.0-3) §

fw4spl (17.2.0-1) §

fw4spl (17.2.0-1+b2; main)

g2 (0.72-8) §

libg20 (0.72-8+b1; main)

galileo (0.5.1-6) §

galileo-daemon

gbrowse (2.56+dfsg-4) §

gbrowse

gbrowse-data

gemma (0.98+dfsg-3) §

gemma

genometester (4.0+git20180508.a9c14a6+dfsg-1) §

genometester

genometools (1.5.10+ds-3) §

ginkgocadx (3.8.7-1) §

gmap (2018-07-04-4; non-free) §

gmap

gmap (2018-09-27-1; non-free)

gmap

gmap (2018-09-27-2; non-free)

gmap

gnumed-client (1.7.3+dfsg-1) §

grinder (0.5.4-4) §

grinder

gwyddion (2.50-2) §

gwyddion-plugins

libgwyddion2-0

hilive (1.1-1) §

hinge (0.5.0-2) §

hinge (0.5.0-3)

hmmer2 (2.3.2+dfsg-6) §

libhmmer2-dev

htseq (0.5.4p3-2) §

python-htseq-doc

htseq (0.6.1p1-4)

python-htseq-doc

htseq (0.10.0-1)

htsjdk (2.16.1+dfsg-3) §

libhtsjdk-java-doc

htslib (1.9-6) §

libhts-dev

hyphy (2.3.14+dfsg-1) §

hyphy-mpi

hyphy-pt

igraph (0.7.1-2.1) §

imagej (1.52g-1) §

libij-java-doc

insighttoolkit4 (4.12.2-dfsg1-4) §

libinsighttoolkit4-dev (4.12.2-dfsg1-4+b1; main)

libinsighttoolkit4.12 (4.12.2-dfsg1-4+b1; main)

insighttoolkit4 (4.13.0-dfsg1-2~exp1)

libinsighttoolkit4-dev

libinsighttoolkit4.13

insighttoolkit4 (4.13.1-dfsg1-1~exp1)

invesalius (3.1.99992-2) §

invesalius

ipig (0.0.r5-3) §

ipig

iva (1.0.9+ds-6) §

iva

jam-lib (0.1.20140824-2) §

jebl2 (0.1+git20180418.653eb83-1) §

libjebl2-java-doc

jmodeltest (2.1.10+dfsg-6) §

jmodeltest

kalign (1:2.03+20110620-4) §

khmer (2.1.2+dfsg-3) §

khmer (2.1.2+dfsg-3+b1; main)

khmer-common

kineticstools (0.6.1+20161222-1) §

king (2.23.161103+dfsg1-2) §

kissplice (2.4.0-p1-3) §

kraken (1.1-2) §

kraken

kraken-dbgsym

lamarc (2.1.10.1+dfsg-2) §

lamarc

lambda-align (1.0.3-3) §

last-align (956-1) §

last-align

lefse (1.0.8-2) §

lefse

libace-perl (1.92-8) §

libace-perl (1.92-8+b1; main)

libbio-graphics-perl (2.40-3) §

libbio-graphics-perl

libbio-mage-perl (20030502.3-5) §

libbio-mage-perl

libbio-mage-utils-perl (20030502.0-4) §

libbio-mage-utils-perl

libbpp-phyl-omics (2.4.1-1) §

libbpp-phyl-omics3

libcolt-free-java (1.2.0+dfsg-5) §

libgenome (1.3.11+svn20110227.4616-2) §

libgenome-perl (0.06-5) [Uploader] §

libgenome-perl

libgkarrays (2.1.0+dfsg-2) §

libgkarrays1-dbgsym

libgzstream (1.5+dfsg-4) §

libgzstream0-dbgsym

libhac-java (0.20110510-3) §

libhac-java-doc

libhat-trie (0.1.2-1) §

libhmsbeagle (2.1.2+git20180307-1) §

libhmsbeagle1v5

libhpptools (1.1.1-1) §

libjung-free-java (2.0.1+dfsg-1) §

libkmlframework-java (0.0.20110822.r24-2) §

liblemon (1.3.1+dfsg-2) §

liblemon-utils

libmems (1.6.0+4725-4) §

libminc (2.3.00-5) §

libmuscle (3.7+4565-2) §

libmuscle (3.7+4565-6)

libmuscle1

libncl (2.1.21+git20180827.c71b264-1) §

ncl-tools

liboptions-java (0.0.20120113-2) §

libpal-java (1.5.1+dfsg-5) §

libpal-java-doc

librandom123 (1.09+dfsg-1) §

librcsb-core-wrapper (1.005-5) §

python-corepywrap (1.005-5+b1; main)

libsbml (5.16.0+dfsg-2) §

libsbml5-examples

libsbml5-java-doc

libsbml5-python

libsis-base-java (18.09~pre1+git20180827.fe4953e+dfsg-1) §

libsis-base-java

libsis-base-jni

libsis-jhdf5-java (14.12.6-2) §

libtecla (1.6.3-2.1) §

libtfbs-perl (0.7.1-2) §

libtfbs-perl (0.7.1-2+b1; main)

libundead (1.0.9-2) §

libvcflib (1.0.0~rc2+dfsg-2) §

libvcflib-tools

libvcflib-tools-dbgsym

lucy (1.20-1) §

lucy

macsyfinder (1.0.5-1) §

maude (2.7-2) §

mauve-aligner (2.4.0+4736-1) §

mauve-aligner

mcl (1:14-137+ds-3) §

mcl

melting (4.3.1+dfsg-3) §

metaphlan2 (2.7.8-1) §

metaphlan2

metaphlan2-data (2.6.0+ds-3) §

mgltools-bhtree (1.5.7-2; non-free) §

mgltools-bhtree

mgltools-cadd (1.5.7-3; non-free) §

mgltools-cadd

mgltools-cmolkit (1.5.7~rc1+cvs.20140424-2; non-free) §

mgltools-cmolkit

mgltools-dejavu (1.5.7-2; non-free) §

mgltools-dejavu

mgltools-geomutils (1.5.7-2; non-free) §

mgltools-geomutils

mgltools-gle (1.5.7-2; non-free) §

mgltools-gle

mgltools-mglutil (1.5.7-3; non-free) §

mgltools-mglutil

mgltools-molkit (1.5.7-2; non-free) §

mgltools-molkit

mgltools-networkeditor (1.5.7-3; non-free) §

mgltools-networkeditor

mgltools-opengltk (1.5.7-2; non-free) §

mgltools-opengltk

mgltools-pmv (1.5.7-2; non-free) §

mgltools-pmv

mgltools-pyautodock (1.5.7-2; non-free) §

mgltools-pyautodock

mgltools-pybabel (1.5.7-2; non-free) §

mgltools-pybabel

mgltools-pyglf (1.5.7-2; non-free) §

mgltools-pyglf

mgltools-scenario2 (1.5.7-2; non-free) §

mgltools-scenario2

mgltools-sff (1.5.7-2; non-free) §

mgltools-sff

mgltools-support (1.5.7-2; non-free) §

mgltools-support

mgltools-symserv (1.5.7-2; non-free) §

mgltools-symserv

mgltools-utpackages (1.5.7-2; non-free) §

mgltools-utpackages

mgltools-viewerframework (1.5.7-2; non-free) §

mgltools-vision (1.5.7+dfsg-1; non-free) §

mgltools-vision

mgltools-visionlibraries (1.5.7-2; non-free) §

mgltools-visionlibraries

mgltools-volume (1.5.7-2; non-free) §

mgltools-volume

mgltools-webservices (1.5.7-2; non-free) §

mgltools-webservices

mia (2.4.6-3) §

microbegps (1.0.0-3) §

microbegps

microbiomeutil (20101212+dfsg1-2) §

chimeraslayer

microbiomeutil-data

nast-ier

wigeon

minc-tools (2.3.00+dfsg-3) §

minc-tools (2.3.00+dfsg-3+b1; main)

minia (1.6906-2) §

minia

mira (4.9.6-4) §

mobyle (1.5.5+dfsg-6) §

mobyle

mobyle-utils

mobyle-utils-dbgsym

mobyle-programs (5.1.2-3) §

mobyle-programs

mrbayes (3.2.6+dfsg-2) §

mrbayes-doc

mriconvert (1:2.1.0-2) §

mrs (6.0.5+dfsg-7) §

mrs-dbgsym (6.0.5+dfsg-7+b2; main)

mypy (0.641-1) §

mypy

ncbi-blast+ (2.7.1-1) §

ncbi-blast+ (2.7.1-1+b2; main)

ncbi-blast+-legacy

ncbi-entrez-direct (10.5.20181204+ds-2) §

ncbi-entrez-direct

ncbi-tools6 (6.1.20170106-4) §

libncbi6

libvibrant6-dev

libvibrant6b

ngs-sdk (2.9.0-1) §

libngs-sdk2-dbgsym

njplot (2.4-8) §

njplot-dbgsym

nutsqlite (2.0.4-1) §

nutsqlite

odil (0.9.2-1) §

opencfu (3.9.0-3) §

opencfu

openslide (3.4.1+dfsg-4) §

libopenslide-dev

opensurgsim (0.7.0-7) §

libopensurgsim

orthanc (1.4.2+dfsg-2) §

orthanc (1.4.2+dfsg-2+b1; main)

orthanc-dicomweb (0.5+dfsg-2) §

orthanc-dicomweb (0.5+dfsg-2+b1; main)

orthanc-mysql (1.1-1) §

orthanc-mysql (1.1-1+b1; main)

orthanc-postgresql (2.2-3) §

orthanc-postgresql (2.2-3+b1; main)

orthanc-webviewer (2.4-2) §

orthanc-webviewer (2.4-2+b1; main)

orthanc-wsi (0.5-2) §

orthanc-wsi (0.5-2+b2; main)

paml (4.9h+dfsg-1) §

paml

paraclu (9-2) §

paraclu

patman (1.2.2+dfsg-4) §

pbalign (0.3.1-1) §

pbbam (0.7.4+ds-1) §

pbbam (0.18.0+dfsg-1)

pbbam (0.19.0+dfsg-1)

pbbamtools

pbbarcode (0.8.0-5) §

pbbarcode

pbdagcon (0.3+20161121+ds-1) §

pbdagcon (0.3+20161121+ds-1+b1; main)

pbgenomicconsensus (2.1.0-1) §

pbh5tools (0.8.0+git20170929.58d54ff+dfsg-1) §

pbseqlib (0~20160705-1) §

pbseqlib (5.3.1+dfsg-1)

libblasr (5.3.1+dfsg-1+b1; main)

libpbdata (5.3.1+dfsg-1+b1; main)

libpbihdf (5.3.1+dfsg-1+b1; main)

pbsuite (15.8.24+dfsg-3) §

pdb2pqr (2.1.1+dfsg-4) §

pdb2pqr-doc

phast (1.5+dfsg-1) §

phast

phipack (0.0.20160614-3) §

phipack

phybin (0.3-1) §

phybin-dbgsym

phybin (0.3-2)

phybin

phylip (1:3.697+dfsg-1) §

phylip

phyml (3:3.3.20180621-2) §

phyml

phyml-dbgsym

phyx (0.999+ds-1) §

phyx

pirs (2.0.2+dfsg-7) §

pirs

pirs-dbgsym

pixelmed (20150917-2) §

pixelmed-apps

pixelmed-www

pixelmed-codec (20170512-1) §

libpixelmed-codec-java

plast (2.3.1+dfsg-4) §

pondus (0.8.0-3) §

populations (1.2.33+svn0120106+dfsg-1) §

proteinortho (5.16+dfsg-1) §

proteinortho-dbgsym

psortb (3.0.6+dfsg-1) §

psortb (3.0.6+dfsg-1+b1; main)

pvrg-jpeg (1.2.1+dfsg1-5) §

pyscanfcs (0.3.1~gitd295b59+ds-1) §

python-bd2k (1.14~alpha1.48-1) §

python-bd2k

python-biom-format (2.1.6+dfsg-2) §

biom-format-tools (2.1.6+dfsg-2+b1; main)

python-biom-format (2.1.6+dfsg-2+b1; main)

python3-biom-format (2.1.6+dfsg-2+b1; main)

python-biopython (1.72+dfsg-2) §

python-bx (0.8.2-1) §

python-bx-tools

python3-bx-tools

python-clips (1.0.7.348+clips-4) §

python-cobra (0.5.9-1) §

python-cogent (1.9-12) §

python-csb (1.2.5+dfsg-3) §

python-easydev (0.9.35+dfsg-2) §

python-easydev

python3-easydev

python-freecontact (1.1-3) §

python-mne (0.15.2+dfsg-2) §

python-mne

python-pbcommand (1.1.1-1) §

python-pbcore (1.5.0+git20180606.43fcd9d+dfsg-2) §

python-pyfaidx (0.5.5.2-1) §

python-pyfaidx-examples

python-pyflow (1.1.20-1) §

python-pymummer (0.10.3-1) §

python-pysam (0.15.1+ds-1) §

python-pysam

python3-pysam

python-pyvcf (0.6.8+git20170215.476169c-1) §

pyvcf

python-qcli (0.1.1-3) §

python-ruffus (2.8.1-3) §

python-ruffus

python-schema-salad (2.6.20171201034858-3) §

python-screed (1.0-3) §

python3-screed

python-skbio (0.5.2-1) §

python-skbio-doc

python-sqlsoup (0.9.1-3) §

python-treetime (0.2.4-1) §

python-xopen (0.3.3-1) §

python3-typed-ast (1.1.0-1) §

qcumber (1.0.14+dfsg-1) §

qcumber

qiime (1.9.1+dfsg-1) §

qiime

qiime-doc

qiime (1.9.1+dfsg-3)

qiime

qiime-dbgsym

qiime-doc

radiant (2.7+dfsg-2) §

radiant

rapmap (0.5.0+dfsg-3) §

rapmap

raxml (8.2.12+dfsg-1) §

raxml

raxml-dbgsym

ray (2.3.1-6) §

ray

rdp-alignment (1.2.0-5) §

rdp-alignment

rdp-classifier (2.10.2-4) §

rdp-classifier

rdp-classifier-doc

reapr (1.0.18+dfsg-4) §

reapr

relion (1.4+dfsg-4) §

reprof (1.0.1-6) §

roary (3.12.0+dfsg-2) §

roary

rsem (1.3.1+dfsg-1) §

rsem

rtax (0.984-6) §

rtax

runcircos-gui (0.0+git20180828.97703b9-1) §

runcircos-gui

salmon (0.7.2+ds1-3) §

sambamba (0.6.7-2) §

samtools (1.9-1) §

samtools

scythe (0.994+git20141017.20d3cff-1) §

seer (1.1.4-2) §

seer (1.1.4-2+b2; main)

seqmagick (0.7.0-1) §

seqmagick

seqtools (4.44.1+dfsg-2) §

sga (0.10.15-4) §

sga

sga-dbgsym

sift (4.0.3b-6; non-free) §

sift

sitplus (1.0.3-5.1) §

smalr (1.1+dfsg-1) §

smalr

snakemake (5.3.0-1) §

snakemake

snap (2013-11-29-9) §

snap

snap-aligner (1.0~beta.18+dfsg-2) §

snap-aligner-dbgsym

soapaligner (2.20-1) §

soapaligner-dbgsym

soapsnp (1.03-2) §

soapsnp

socket++ (1.12.13-9) §

sofa-framework (1.0~beta4-12) §

solvate (1.0-2; non-free) §

sphinxcontrib-autoprogram (0.1.4-2) §

python3-sphinxcontrib.autoprogram

sphinxcontrib-autoprogram

sprai (0.9.9.23+dfsg-1) §

sprai

spread-phy (1.0.7+dfsg-2) §

squizz (0.99d+dfsg-2) §

squizz

sra-sdk (2.9.3+dfsg-1) §

sra-toolkit (2.9.3+dfsg-1+b1; main)

stacks (2.2+dfsg-1) §

stacks

stacks-web

staden (2.0.0+b11-3) §

staden

staden-io-lib (1.14.9-4) §

staden-io-lib-examples

staden-io-lib (1.14.11-5)

libstaden-read-dev

libstaden-read13

staden-io-lib-examples

staden-io-lib-utils

sumaclust (1.0.31-2) §

sumaclust-dbgsym

sumatra (1.0.31-2) §

sumatra-dbgsym

swarm-cluster (2.2.2+dfsg-2) §

swarm

sweed (3.2.1+dfsg-1) §

swissknife (1.75-1) §

libswiss-perl

theseus (3.3.0-8) §

theseus

tifffile (20181128-1) §

tifffile

tnseq-transit (2.3.2-1) §

tnseq-transit

tophat (2.1.1+dfsg1-2) §

tophat (2.1.1+dfsg1-2+b1; main)

toppred (1.10-7) §

toppred

trace2dbest (3.0.1-1) §

trace2dbest

tracetuner (3.0.6~beta+dfsg-1) §

tracetuner

transrate-tools (1.0.0-2) §

transrate-tools-dbgsym

tree-puzzle (5.2-11) §

treeview (1.1.6.4+dfsg1-3) §

trinityrnaseq (2.5.1+dfsg-2) §

trinityrnaseq

trinityrnaseq-dbgsym

trinityrnaseq-examples

trnascan-se (2.0.0-3; non-free) §

trnascan-se

tvc (5.0.3+git20151221.80e144e+dfsg-1) §

tvc

uc-echo (1.12-10) §

uc-echo

ugene (1.25.0+dfsg-1; non-free) §

ugene

velvetoptimiser (2.2.6-2) §

velvetoptimiser

visionegg (1.2.1-5) §

volpack (1.0b3-7) §

libvolpack1-dev

vsearch (2.9.0-1) §

vsearch

vtk-dicom (0.7.10-1) §

wise (2.4.1-21) §

wise-data

xmedcon (0.15.0+dfsg-3) §

libmdc-dev

medcon

xmedcon

yaggo (1.5.10-1) §