Lintian Reports

Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the full report, including info, experimental and overridden tags. Also see their QA overview.

abacas (1.3.1-4)

abacas

abyss (2.0.2-3)

abyss

adapterremoval (2.2.2-1)

adapterremoval

adun.app (0.81-10)

adun.app

adun.app-dbg

aegean (0.15.2+dfsg-1)

aegean-dbg

aeskulap (0.2.2b1+git20161206-2)

aeskulap (0.2.2b1+git20161206-2+b1; main)

aevol (5.0-1)

aevol

alien-hunter (1.7-5)

alien-hunter

alter-sequence-alignment (1.3.3+dfsg-1)

amap-align (2.2-6)

ampliconnoise (1.29-6)

ampliconnoise-dbgsym (1.29-6+b1; main)

andi (0.11-1)

arb (6.0.6-2; non-free)

arb-common

ariba (2.10.1+ds-1)

art-nextgen-simulation-tools (20160605+dfsg-2)

augustus (3.3+dfsg-2)

autodock-vina (1.1.2-4)

autodock-vina-dbgsym

autodocksuite (4.2.6-3)

autodocktools (1.5.7-2; non-free)

axe-demultiplexer (0.3.2+dfsg1-1)

axe-demultiplexer (0.3.2+dfsg1-1+b1; main)

baitfisher (1.0+dfsg-2)

baitfisher

baitfisher-dbgsym

ball (1.4.3~beta1-3)

ballview (1.4.3~beta1-3+b1; main)

libball1.4 (1.4.3~beta1-3+b1; main)

libballview1.4 (1.4.3~beta1-3+b1; main)

ball (1.4.3~beta1-4)

ballview

libball1.4

libball1.4-data

libball1.4-dev

libball1.4-doc

libballview1.4

libballview1.4-dev

python-ball

python-ballview

bambamc (0.0.50-1)

libbambamc0

barrnap (0.8+dfsg-2)

bcftools (1.5-2)

bcftools

beast-mcmc (1.8.4+dfsg.1-2)

beast-mcmc

libnucleotidelikelihoodcore0-dbgsym

bedops (2.4.26+dfsg-1)

bedops

bedops-dbgsym

bedtools (2.26.0+dfsg-5)

bedtools

bedtools-dbgsym

bedtools-test

bio-rainbow (2.0.4-1)

bio-rainbow (2.0.4-1+b1; main)

bio-tradis (1.3.3+dfsg-2)

biojava4-live (4.2.7+dfsg-2)

libbiojava4-java-doc

biomaj (1.2.3-12)

biomaj

biomaj-watcher (1.2.2-5; contrib)

biomaj-watcher

bioperl (1.7.1-3)

bioperl

libbio-perl-perl

bioperl-run (1.7.2-1)

bioperl-run

libbio-perl-run-perl

biosquid (1.9g+cvs20050121-10)

bitops (1.0-6-1)

blasr (5.3+0-1)

blasr (5.3+0-1+b1; main)

blimps (3.9-1; non-free)

blimps-examples

blimps-utils

libblimps3

libblimps3-dev

bowtie (1.2.0+dfsg-1)

bowtie

bowtie-examples

bowtie2 (2.2.5-2)

bppphyview (0.5.1-1)

bppphyview-dbgsym

bppsuite (2.3.1-4)

bppsuite

bppsuite-dbgsym

brig (0.95+dfsg-1)

brig

bwa (0.7.16-1)

camitk (4.0.4-2)

libcamitk4 (4.0.4-2+b1; main)

libqtpropertybrowser4 (4.0.4-2+b1; main)

cassiopee (1.0.5-2)

libcassie1v5

cd-hit (4.6.8-1)

cd-hit

ciftilib (1.5.1-1)

libcifti-doc

circlator (1.5.1-1)

circos (0.69.5+dfsg-1)

circos

otf-symbols-circos

clearcut (1.0.9-1)

clearcut-dbgsym (1.0.9-1+b1; main)

clustalo (1.2.4-1)

concavity (0.1+dfsg.1-1)

crac (2.5.0+dfsg-2)

crac

ctsim (5.2.0-4)

ctsim-doc

cwltool (1.0.20170810192106-2)

cwltool

dawg (1.2-1)

debian-med (3.0.1)

med-all

med-bio

med-bio-dev

med-cloud

med-config

med-data

med-dental

med-epi

med-his

med-imaging

med-imaging-dev

med-laboratory

med-oncology

med-pharmacy

med-physics

med-practice

med-psychology

med-rehabilitation

med-statistics

med-tasks

med-tools

med-typesetting

dichromat (2.0.0-3)

dicom3tools (1.00~20170222075252-1)

discosnp (1.2.6-1)

discosnp (1.2.6-1+b2; main)

dnaclust (3-5)

dnaclust

dwgsim (0.1.11-3)

ecopcr (0.5.0+dfsg-1)

ecopcr

edflib (1.12-2)

edtsurf (0.2009-4)

eigensoft (6.1.4+dfsg-1)

eigensoft (6.1.4+dfsg-1+b2; main)

embassy-domalign (0.1.660-1)

embassy-domalign

embassy-domsearch (1:0.1.660-1)

embassy-domsearch

emboss (6.6.0+dfsg-6)

emboss

emboss-doc

emboss-lib

emboss-test

jemboss

emboss-explorer (2.2.0-9)

emboss-explorer

epigrass (2.4.7-2)

epigrass

falcon (1.8.6-1.1)

falcon

falcon-dbgsym

fast5 (0.6.3-1)

fast5

fastaq (3.15.0-2)

fastlink (4.1P-fix100+dfsg-1+b1; main)

fastlink-dbgsym (4.1P-fix100+dfsg-1+b1; main)

fastqtl (2.184+dfsg-5)

fasttree (2.1.10-1)

fastx-toolkit (0.0.14-5)

fastx-toolkit

fermi-lite (0.1-4)

ffindex (0.9.9.7-4)

ffindex

libffindex0

fis-gtm (6.3-000A-1)

fis-gtm-6.3-000a

fis-gtm (6.3-002-3)

fis-gtm-6.3-002

freebayes (1.1.0-1)

freebayes

freecontact (1.0.21-6)

freemedforms-project (0.9.4-2)

freemedforms-libs

fw4spl (11.0.4-2)

fw4spl (11.0.4-2+b2; main)

g2 (0.72-6)

libg20 (0.72-6+b2; main)

galileo (0.5.1-4)

galileo

galileo-daemon

garli (2.1-1)

garli-examples

gbrowse (2.56+dfsg-3)

gbrowse

genometools (1.5.10+ds-1)

gentle (1.9+cvs20100605+dfsg1-6)

gfapy (1.0.0+dfsg-2)

python3-gfapy

gff2aplot (2.0-8)

gff2aplot (2.0-8+b1; main)

gff2ps (0.98d-5)

gnumed-client (1.6.14+dfsg-1)

gnumed-doc

grinder (0.5.4-2)

grinder

gubbins (2.3.1-1)

gwama (2.2.2+dfsg-1)

hilive (1.0-1)

hmmer (3.1b2+dfsg-5)

hmmer

hmmer2 (2.3.2+dfsg-5)

libhmmer2-dev

htseq (0.5.4p3-2)

python-htseq-doc

htseq (0.6.1p1-4)

python-htseq-doc

htslib (1.5-1)

libhts-dev

hunspell-en-med (0.0.20080513-2)

hunspell-en-med

hyphy (2.2.7+dfsg-1)

hyphy-mpi (2.2.7+dfsg-1+b2; main)

hyphy-pt (2.2.7+dfsg-1+b2; main)

hyphygui (2.2.7+dfsg-1+b2; main)

igraph (0.7.1-2.1)

insighttoolkit4 (4.12.2-dfsg1-1)

libinsighttoolkit4-dev

libinsighttoolkit4.12

ipig (0.0.r5-2)

iqtree (1.5.5+dfsg-1)

iqtree

ismrmrd (1.3.3-1)

libismrmrd-doc

iva (1.0.8+ds-1)

iva

jebl2 (0.1+20140614-1)

jmodeltest (2.1.10+dfsg-5)

jmodeltest

khmer (2.1.2+dfsg-1)

khmer-common

kmc (2.3+dfsg-5)

kraken (0.10.5~beta-6)

kraken

kraken-dbgsym

last-align (885-1)

last-align

lefse (1.0.8-1)

lefse

libace-perl (1.92-4)

libace-perl (1.92-4+b3; main)

libbio-graphics-perl (2.40-2)

libbio-graphics-perl

libbio-mage-perl (20030502.3-3)

libbio-mage-perl

libbio-mage-utils-perl (20030502.0-2)

libbio-mage-utils-perl

libbiod (0.1.0-4)

libbiod0 (0.1.0-4+b1; main)

libbpp-core (2.3.1-5)

libbpp-phyl (2.3.1-10)

libbpp-phyl-omics (2.3.1-5)

libbpp-phyl-omics2-dbgsym

libbpp-popgen (2.3.1-5)

libbpp-popgen7-dbgsym

libbpp-raa (2.3.1-4)

libbpp-raa3-dbgsym

libbpp-seq (2.3.1-8)

libbpp-seq-omics (2.3.1-5)

libchado-perl (1.31-4)

chado-utils

libcolt-free-java (1.2.0+dfsg-4)

libgenome-model-tools-music-perl (0.04-3) [Uploader]

libgenome-perl (0.06-3) [Uploader]

libgff (1.0-1)

libgkarrays (2.1.0+dfsg-1)

libgkarrays1-dbgsym

libgzstream (1.5+dfsg-2)

libgzstream0-dbgsym

libhac-java (0.20110510-1)

libhat-trie (0.1.2-1)

libhmsbeagle (2.1.2+20160831-5)

libhmsbeagle1v5

libics (1.5.2-6)

libjung-free-java (2.0.1+dfsg-1)

liblemon (1.3.1+dfsg-1)

liblemon-utils (1.3.1+dfsg-1+b2; main)

libncl (2.1.18+dfsg-2)

liboptions-java (0.0.20120113-2)

librandom123 (1.09+dfsg-1)

librcsb-core-wrapper (1.005-4)

librcsb-core-wrapper-doc

librcsb-core-wrapper0-dbg (1.005-4+b3; main)

python-corepywrap (1.005-4+b3; main)

python-corepywrap-dbg (1.005-4+b3; main)

librdp-taxonomy-tree-java (1.2.0-1)

librg-exception-perl (1.0.3-2)

librostlab (1.0.20-7)

librostlab-blast (1.0.1-8)

libsbml (5.15.2+dfsg-1)

libseqlib (1.1.1+dfsg-2)

libsis-base-java (14.12.0-4)

libsis-base-jni

libsort-key-top-perl (0.08-1)

libssw (1.1-1)

libtabixpp (1.0.0-3)

libtabixpp0-dbg (1.0.0-3+b1; main)

libtecla (1.6.3-2)

libtfbs-perl (0.7.0+dfsg-4)

libtfbs-perl (0.7.0+dfsg-4+b1; main)

libvcflib (1.0.0~rc1+dfsg1-6)

libvcflib-tools

libvcflib-tools-dbgsym

libvistaio (1.2.19-1)

libvistaio14-dbg

libzerg (1.0.7-8)

libzerg0

libzerg0-dbg

libzerg0-dev

libzstd (1.3.1+dfsg-2)

libzstd-dev

libzstd1

zstd

ltrsift (1.0.2-7)

ltrsift-dbg

macsyfinder (1.0.2-4)

maffilter (1.2.1+dfsg-1)

maffilter

maffilter-dbgsym

mapdamage (2.0.8+dfsg-1)

mapsembler2 (2.2.4+dfsg-1)

mapsembler2

maq (0.7.1-7)

maq

maqview (0.2.5-7)

maqview (0.2.5-7+b1; main)

mash (2.0-2)

mauve-aligner (2.4.0+4734-3)

mauve-aligner

maxflow (3.0.4-1)

libmaxflow0

libmaxflow0-dbg

mcl (1:14-137-1)

mcl (1:14-137-1+b1; main)

mcl-doc

melting (4.3.1+dfsg-2)

mencal (3.0-2)

mencal

metaphlan2 (2.6.0+ds-2)

metaphlan2

metastudent-data-2 (1.0.0-2)

mgltools-bhtree (1.5.7-1; non-free)

mgltools-bhtree

mgltools-cadd (1.5.7-1; non-free)

mgltools-cadd

mgltools-cmolkit (1.5.7~rc1+cvs.20140424-1; non-free)

mgltools-cmolkit

mgltools-dejavu (1.5.7-1; non-free)

mgltools-dejavu

mgltools-geomutils (1.5.7-1; non-free)

mgltools-geomutils

mgltools-gle (1.5.7-1; non-free)

mgltools-gle

mgltools-mglutil (1.5.7-2; non-free)

mgltools-mglutil

mgltools-molkit (1.5.7-1; non-free)

mgltools-molkit

mgltools-networkeditor (1.5.7-1; non-free)

mgltools-networkeditor

mgltools-opengltk (1.5.7-1; non-free)

mgltools-opengltk

mgltools-pmv (1.5.7-1; non-free)

mgltools-pmv

mgltools-pyautodock (1.5.7-1; non-free)

mgltools-pyautodock

mgltools-pybabel (1.5.7-1; non-free)

mgltools-pybabel

mgltools-pyglf (1.5.7-1; non-free)

mgltools-pyglf

mgltools-scenario2 (1.5.7-1; non-free)

mgltools-scenario2

mgltools-sff (1.5.7-1; non-free)

mgltools-sff

mgltools-support (1.5.7-1; non-free)

mgltools-support

mgltools-symserv (1.5.7-1; non-free)

mgltools-symserv

mgltools-utpackages (1.5.7-1; non-free)

mgltools-utpackages

mgltools-viewerframework (1.5.7-1; non-free)

mgltools-vision (1.5.7-1; non-free)

mgltools-vision

mgltools-visionlibraries (1.5.7-1; non-free)

mgltools-visionlibraries

mgltools-volume (1.5.7-1; non-free)

mgltools-volume

mgltools-webservices (1.5.7-1; non-free)

mgltools-webservices

microbegps (1.0.0-2)

microbegps

microbiomeutil (20101212+dfsg1-1)

minc-tools (2.3.00+dfsg-1.1)

minc-tools (2.3.00+dfsg-1.1+b1; main)

minia (1.6906-1)

minia (1.6906-1+b2; main)

miniasm (0.2+dfsg-2)

minimap (0.2-3)

mipe (1.1-5)

mira (4.9.6-3)

mlv-smile (1.47-4)

mobyle (1.5.5+dfsg-3)

mobyle

mobyle-utils

mobyle-utils-dbgsym

mobyle-programs (5.1.2-1)

mobyle-programs

mobyle-tutorials (1.5.0-2)

mothur (1.39.5-2)

mrbayes (3.2.6+dfsg-2)

mrbayes-doc

mrs (6.0.5+dfsg-3)

mrs-dbgsym

murasaki (1.68.6-6)

murasaki-mpi (1.68.6-6+b4; main)

muscle (1:3.8.31+dfsg-3)

mustang (3.2.3-1)

mustang-dbgsym

ncbi-blast+ (2.6.0-1)

blast2 (1:2.6.0-1; main)

ncbi-blast+

ncbi-blast+-legacy

ncbi-entrez-direct (7.40.20170928+ds-1)

ncbi-entrez-direct

ncbi-tools6 (6.1.20170106-2)

libncbi6

ncbi-tools-x11

ncbi-vdb (2.8.1+dfsg-2)

ngs-sdk (1.3.0-3)

libngs-sdk1-dbgsym

njplot (2.4-7)

njplot-dbgsym

norsnet (1.0.17-2)

norsp (1.0.6-2)

nutsqlite (1.9.9.6-1)

nutsqlite

odil (0.8.0-3.1)

python3-odil

opencfu (3.9.0-2)

openslide (3.4.1+dfsg-2)

libopenslide-dev

opensurgsim (0.7.0-5)

libopensurgsim

orthanc-dicomweb (0.4+dfsg-1)

orthanc-dicomweb (0.4+dfsg-1+b1; main)

orthanc-imagej (1.1+dfsg-1)

orthanc-postgresql (2.0-4)

orthanc-postgresql

orthanc-webviewer (2.3-1)

orthanc-webviewer (2.3-1+b1; main)

orthanc-wsi (0.4+dfsg-4)

orthanc-wsi

paml (4.9e+dfsg-1)

paml

papyrus (3.7.1+dfsg-2)

paraclu (9-1)

paraclu (9-1+b2; main)

paraclu-dbgsym (9-1+b2; main)

parafly (0.0.2013.01.21-3)

parsnp (1.2+dfsg-3)

pbalign (0.3.0-1)

pbalign

pbbam (0.7.4+ds-1)

pbbamtools (0.7.4+ds-1+b1; main)

pbbarcode (0.8.0-4)

pbbarcode

pbdagcon (0.3+20161121+ds-1)

pbdagcon (0.3+20161121+ds-1+b1; main)

pbh5tools (0.8.0+dfsg-5)

pbseqlib (0~20161219-1)

libblasr

libpbdata

libpbihdf

pdb2pqr (2.1.1+dfsg-2)

pdb2pqr-doc

permute (0.9-4-1)

phipack (0.0.20160614-2)

phipack

phybin (0.3-1)

phybin (0.3-1+b1; main)

phybin-dbgsym

phylip (1:3.696+dfsg-5)

phylip

phyml (3:3.3.20170530+dfsg-2)

phyml

phyml-dbgsym

phyutility (2.7.3-1)

piler (0~20140707-1)

pirs (2.0.2+dfsg-6)

pirs

pirs-dbgsym

pixelmed (20150917-2)

pixelmed-apps

pixelmed-www

placnet (1.03-2)

plip (1.3.3+dfsg-1)

pondus (0.8.0-2) [Uploader]

pondus

pp-popularity-contest (1.0.6-2)

pp-popularity-contest (1.0.6-2+b4; main)

pp-popularity-contest-dbg (1.0.6-2+b4; main)

predictprotein (1.1.07-2)

proalign (0.603-2)

probalign (1.4-6)

probcons (1.12-11)

probcons

probcons-extra

proda (1.0-11)

profphd (1.0.42-1)

proftmb (1.1.12-6)

proftmb-dbg (1.1.12-6+b2; main)

progressivemauve (1.2.0+4713-3)

proteinortho (5.15+dfsg-1)

proteinortho-dbgsym

psortb (3.0.4+dfsg-2)

psortb (3.0.4+dfsg-2+b2; main)

pvclust (2.0-0-2)

pvrg-jpeg (1.2.1+dfsg1-4)

pynast (1.2.2-2)

pyqi (0.3.2+dfsg-2)

python-biom-format (2.1.5+dfsg-7)

biom-format-tools (2.1.5+dfsg-7+b1; main)

python-biopython (1.70+dfsg-2)

python-biopython

python3-biopython

python-burrito (0.9.1-1)

python-bz2file (0.98-1)

python-bz2file

python-casmoothing (0.2-1)

python-cogent (1.9-11)

python-cogent-doc

python-csb (1.2.3+dfsg-3)

python-easydev (0.9.35+dfsg-1)

python-easydev

python3-easydev

python-fitbit (0.2.4-1)

python-freecontact (1.1-2)

python-gffutils (0.8.7.1-1)

python3-gffutils

python-intervaltree-bio (1.0.1-1)

python-intervaltree-bio

python-mne (0.13.1+dfsg-3)

python-pbcore (1.2.11+dfsg-1)

python-pybedtools (0.7.8-1)

python3-pybedtools

python-pyflow (1.1.14-1)

python-pyflow

python-pysam (0.12.0.1+ds-2)

python-pyvcf (0.6.8-1)

pyvcf

python-ruffus (2.6.3+dfsg-4)

python-ruffus-doc

python-schema-salad (2.6.20170630075932-2)

python-screed (1.0-2)

python3-screed

python-treetime (0.0+20170607-1)

python-treetime

python-treetime-examples

python-xopen (0.1.1-1)

python-xopen

qcumber (1.0.14+dfsg-1)

qcumber

qiime (1.9.1+dfsg-1)

qiime

qsopt-ex (2.5.10.3-1)

r-bioc-biobase (2.36.2-1)

r-bioc-biocgenerics (0.22.1-1)

r-bioc-biocinstaller (1.26.1-2)

r-bioc-biostrings (2.44.2-1)

r-bioc-biostrings (2.44.2-1+b1; main)

r-bioc-cummerbund (2.16.0-3)

r-bioc-dnacopy (1.48.0-1)

r-bioc-ensembldb (1.6.2-2)

r-bioc-genomeinfodbdata (0.99.0-2)

r-bioc-graph (1.54.0-1)

r-bioc-graph (1.54.0-1+b1; main)

r-bioc-gviz (1.20.0-2)

r-bioc-mergeomics (1.4.0-2)

r-bioc-multtest (2.32.0-1)

r-bioc-rbgl (1.50.0+dfsg1-1)

r-cran-assertthat (0.2.0-1)

r-cran-backports (1.1.1-1)

r-cran-batchjobs (1.6-1)

r-cran-bbmle (1.0.19-1)

r-cran-beeswarm (0.2.3-2)

r-cran-boolnet (2.1.3-1)

r-cran-brew (1.0-6-1)

r-cran-catools (1.17.1-1)

r-cran-cmprsk (2.2-7-2)

r-cran-combinat (0.0-8-4)

r-cran-curl (3.0-2)

r-cran-deal (1:1.2-37-2)

r-cran-dosefinding (0.9-15-1)

r-cran-ellipse (0.3-8-2)

r-cran-epibasix (1.3-2)

r-cran-etm (0.6-2-3)

r-cran-evd (2.3-2-1)

r-cran-fail (1.3-1)

r-cran-fastmatch (1.0-4-1)

r-cran-futile.logger (1.4.3-2)

r-cran-futile.options (1.0.0-3)

r-cran-g.data (2.4-1)

r-cran-genabel (1.8-0-1)

r-cran-genabel.data (1.0.0-1)

r-cran-genetics (1.3.8.1-1)

r-cran-googlevis (0.6.2-2)

r-cran-googlevis

r-cran-gridbase (0.4-7-3)

r-cran-gtable (0.2.0-2)

r-cran-haplo.stats (1.7.7-1)

r-cran-haplo.stats (1.7.7-1+b1; main)

r-cran-hexbin (1.27.1-1)

r-cran-httpcode (0.2.0-2)

r-cran-hwriter (1.3.2-1)

r-cran-labeling (0.3-1)

r-cran-labeling

r-cran-lambda.r (1.2-1)

r-cran-luminescence (0.6.4-1)

r-cran-matrixstats (0.52.2-1)

r-cran-nmf (0.20.6-1)

r-cran-nnls (1.4-1)

r-cran-pheatmap (1.0.8-2)

r-cran-pkgconfig (2.0.1-2)

r-cran-plogr (0.1-1-2)

r-cran-plyr (1.8.4-1)

r-cran-praise (1.0.0-2)

r-cran-psy (1.1-3)

r-cran-r.methodss3 (1.7.1-1)

r-cran-r.oo (1.21.0-1)

r-cran-r.oo (1.21.0-1+b1; main)

r-cran-randomforest (4.6-12-1)

r-cran-rcurl (1.95-4.8-3)

r-cran-rcurl (1.95-4.8-3+b1; main)

r-cran-registry (0.3-2)

r-cran-reshape2 (1.4.2-1)

r-cran-segmented (0.5-2.2-1)

r-cran-sendmailr (1.2-1-1)

r-cran-seqinr (3.4-5-1)

r-cran-seqinr (3.4-5-1+b1; main)

r-cran-seroincidence (1.0.5-2)

r-cran-shape (1.4.3-1)

r-cran-shiny (1.0.5+dfsg-2)

r-cran-shiny

r-cran-snowballc (0.5.1-1)

r-cran-testit (0.7-1)

r-cran-testthat (1.0.2-2)

r-cran-tidyr (0.6.1-1)

r-cran-treescape (1.10.18-8)

r-cran-treescape

r-cran-urltools (1.6.0-1)

r-cran-withr (2.0.0-1)

raccoon (1.0b-2; contrib)

radiant (2.7+dfsg-1)

radiant

rapmap (0.4.0+dfsg-2)

rapmap

raster3d (3.0-3-2)

raster3d-doc

raxml (8.2.10+dfsg-1)

raxml

raxml-dbgsym

readseq (1-11)

readseq (1-11+b1; main)

reapr (1.0.18+dfsg-3)

repeatmasker-recon (1.08-3)

repeatmasker-recon (1.08-3+b1; main)

rna-star (2.5.3a+dfsg-3)

roary (3.11.0+dfsg-1)

roary

rsem (1.2.31+dfsg-1)

rsem

rtax (0.984-5)

ruby-rgfa (1.3.1-1)

ruby-rgfa

runcircos-gui (0.0+20160403-1)

runcircos-gui

saint (2.5.0+dfsg-2)

salmon (0.7.2+ds1-2)

sambamba (0.6.6-1)

sambamba

samtools (1.5-1)

samtools

samtools-legacy (0.1.19-2)

scythe (0.994-4)

seer (1.1.4-1)

seer

seqan2 (2.3.2+dfsg2-2)

seqan-apps

seqprep (1.3.2-1)

seqprep-data

sga (0.10.14-2)

sga-dbgsym

sga (0.10.15-3)

sga

sga-dbgsym

sibsim4 (0.20-2)

sickle (1.33-1)

sift (4.0.3b-4; non-free)

sift

sigma-align (1.1.3-4)

sigma-align (1.1.3-4+b1; main)

smalt (0.7.6-6)

snakemake (3.10.0-1)

snakemake

snap (2013-11-29-6)

snap

snap-aligner (1.0~beta.18+dfsg-1)

snap-aligner-dbgsym

snp-sites (2.3.3-2)

snpomatic (1.0-3)

soapdenovo (1.05-4)

soapdenovo-dbgsym

sofa-framework (1.0~beta4-12)

spades (3.10.1+dfsg-3)

sphinxcontrib-autoprogram (0.1.2-1)

spread-phy (1.0.7+dfsg-1)

squizz (0.99c+dfsg-1)

squizz

sra-sdk (2.8.1-2+dfsg-2)

sra-toolkit

stacks (1.46-1)

stacks

stacks-web

staden (2.0.0+b11-2)

staden (2.0.0+b11-2+b1; main)

staden-io-lib (1.14.9-3)

libstaden-read-dev

staden-io-lib-examples

staden-io-lib-utils

subread (1.5.3+dfsg-1)

suitename (0.3.070628-1)

suitename-dbgsym (0.3.070628-1+b1; main)

sumatra (1.0.20-1)

sumatra-dbgsym (1.0.20-1+b1; main)

swarm-cluster (2.1.12+dfsg-1)

swarm

tantan (13-4)

theseus (3.3.0-6)

theseus

tnseq-transit (2.0.2-1)

tnseq-transit

tophat (2.1.1+dfsg-3)

tophat

toppred (1.10-4)

toppred

transrate-tools (1.0.0-1)

transrate-tools-dbgsym (1.0.0-1+b1; main)

trinityrnaseq (2.2.0+dfsg-3)

trinityrnaseq-dbgsym

tvc (5.0.3+dfsg-2)

tvc

uc-echo (1.12-9)

uc-echo (1.12-9+b1; main)

ugene (1.25.0+dfsg-1; non-free)

ugene

vcftools (0.1.14+dfsg-4)

velvet (1.2.10+dfsg1-3)

velvet-dbgsym (1.2.10+dfsg1-3+b1; main)

velvet (1.2.10+dfsg1-4)

velvet-dbgsym

velvet-long

volpack (1.0b3-5)

libvolpack1

libvolpack1-dev

vsearch (2.4.3-1)

vsearch

wise (2.4.1-20)

wise-data

xmedcon (0.14.1-2)

libmdc2-dev

medcon

xmedcon

zalign (0.9.1-2)