Andreas Tille

At the time of the last Lintian run, the following possible problems were found in packages maintained by Andreas Tille <tille@debian.org>, listed by source package. See also the report showing only errors and warnings. Also see their QA overview.

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

abacas

• W manpage-has-errors-from-man
  • usr/share/man/man1/abacas.1.gz 20: warning [p 1, 3.0i, div 'an-div', 0.0i]: cannot adjust line

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing

abyss

• X binary-file-built-without-LFS-support
  • usr/lib/abyss/KAligner
  • usr/lib/abyss/PathConsensus
  • usr/lib/abyss/abyss-align

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://ftp.sanger.ac.uk/pub/project/acedb/SUPPORTED/ACEDB-source\.([0-9.]+)\.tar\.gz
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • waction/
  • wdemo/database/
  • wdoc/Interfaces/
  • wemap/
  • whelp/syntax/
  • wsyn/
  • wt1/
• I testsuite-autopkgtest-missing

acedb-other

• X binary-file-built-without-LFS-support
  • usr/bin/efetch [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/efetch [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• W timewarp-standards-version
  • (2019-03-05 < 2019-07-07)

adapterremoval

• X binary-file-built-without-LFS-support
  • usr/bin/AdapterRemoval [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/AdapterRemoval [amd64, i386]
• W privacy-breach-generic
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg) [amd64, i386]
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg) [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/AdapterRemoval pres press [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/AdapterRemoval.1.gz ambigious ambiguous [amd64, i386]
  • usr/share/man/man1/AdapterRemoval.1.gz succesfully successfully [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

adun-core

• X binary-file-built-without-LFS-support
  • usr/bin/AdunServer
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
  • usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1
  • usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so.0.6
• X shlib-calls-exit
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
  • usr/lib/adun.app/libXMLLib.so.0.1
  • usr/lib/adun.app/libadun_base.so.0.0.1
• I spelling-error-in-binary
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 accesible accessible
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 onthe on the
  • usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1 CONECT CONNECT

adun.app

• X binary-file-built-without-LFS-support
  • usr/lib/GNUstep/Applications/UL.app/UL [amd64, i386]
• I wrong-section-according-to-package-name
  • adun.app => gnustep [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 0.2.2-beta2+git20190406.ef77f01
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.4.1)
• P package-uses-old-debhelper-compat-version
  • 11
• W rc-version-greater-than-expected-version
  • 0.2.2-beta2+git20190406.ef77f01 > 0.2.2 (consider using 0.2.2~beta)
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

aeskulap

• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/aeskulap.desktop [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

alien-hunter

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• W package-installs-java-bytecode
  • usr/share/alien_hunter/ChangepointLeft$1.class
  • usr/share/alien_hunter/ChangepointLeft.class
  • usr/share/alien_hunter/ChangepointRight$1.class
  • usr/share/alien_hunter/ChangepointRight.class

• X debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 149)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

amap-align

• X binary-file-built-without-LFS-support
  • usr/bin/amap [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/amap [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 148)
  • debian/changelog (line 29)
  • debian/changelog (line 293)
  • debian/changelog (line 38)
  • debian/changelog (line 40)
  • debian/changelog (line 41)
  • debian/changelog (line 42)
  • debian/changelog (line 50)
  • debian/changelog (line 75)
  • debian/changelog (line 84)
  • debian/changelog (line 85)
  • debian/control (line 4)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • doc/reference/tmpl/
• I testsuite-autopkgtest-missing
• P wiki-copyright-format-uri
  • http://wiki.debian.org/Proposals/CopyrightFormat

amide (1.0.5-12+b1; main)

• X binary-file-built-without-LFS-support
  • usr/bin/amide [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GFDL [amd64, i386]
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/amide.desktop [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/amide caculate calculate [amd64, i386]
  • usr/bin/amide discontinous discontinuous [amd64, i386]
  • usr/bin/amide reseting resetting [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 111)
  • debian/changelog (line 186)
  • debian/changelog (line 191)
  • debian/rules (line 37)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • bin/
• I testsuite-autopkgtest-missing

ampliconnoise

• X binary-file-built-without-LFS-support
  • usr/bin/FCluster [amd64, i386]
  • usr/bin/FastaUnique [amd64, i386]
  • usr/bin/NDist [amd64, i386]
  • usr/bin/Perseus [amd64, i386]
  • usr/bin/PerseusD [amd64, i386]
  • usr/bin/PyroDist [amd64, i386]
  • usr/bin/PyroNoise [amd64, i386]
  • usr/bin/PyroNoiseA [amd64, i386]
  • usr/bin/PyroNoiseM [amd64, i386]
  • usr/bin/SeqDist [amd64, i386]
  • usr/bin/SeqNoise [amd64, i386]
  • usr/bin/SplitClusterClust [amd64, i386]
  • usr/bin/SplitClusterEven [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/FCluster [amd64, i386]
  • usr/bin/FastaUnique [amd64, i386]
  • usr/bin/NDist [amd64, i386]
  • usr/bin/Perseus [amd64, i386]
  • usr/bin/PerseusD [amd64, i386]
  • usr/bin/PyroDist [amd64, i386]
  • usr/bin/PyroNoise [amd64, i386]
  • usr/bin/PyroNoiseA [amd64, i386]
  • usr/bin/PyroNoiseM [amd64, i386]
  • usr/bin/SeqDist [amd64, i386]
  • usr/bin/SeqNoise [amd64, i386]
  • usr/bin/SplitClusterClust [amd64, i386]
  • usr/bin/SplitClusterEven [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bioinf.eva.mpg.de/anfo/
• P file-contains-trailing-whitespace
  • debian/changelog (line 73)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

anfo

• I spelling-error-in-manpage
  • usr/share/man/man1/anfo-tool.1.gz choosen chosen [amd64, i386]
  • usr/share/man/man1/anfo-tool.1.gz occuring occurring [amd64, i386]
  • usr/share/man/man1/anfo-tool.1.gz representaion representation [amd64, i386]
  • usr/share/man/man1/anfo.1.gz optinally optionally [amd64, i386]

libanfo0

• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libanfo.so.0.0.0
  • usr/lib/x86_64-linux-gnu/libanfo.so.0.0.0
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libanfo.so.0.0.0
  • usr/lib/x86_64-linux-gnu/libanfo.so.0.0.0

• I debian-rules-parses-dpkg-parsechangelog
  • (line 9)
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://download.arb-home.de/release/
• P file-contains-trailing-whitespace
  • debian/changelog (line 123)
  • debian/changelog (line 129)
  • debian/changelog (line 174)
  • debian/changelog (line 282)
  • debian/changelog (line 53)
  • debian/changelog (line 725)
  • debian/changelog (line 88)
  • debian/changelog (line 91)
  • debian/rules (line 117)
  • debian/rules (line 4)
  • debian/rules (line 97)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• X maybe-not-arch-all-binnmuable
  • arb -> arb-common
• I missing-explanation-for-contrib-or-non-free-package
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

arb

• I hardening-no-bindnow
  • usr/lib/arb/bin/CAP2 [amd64, i386]
  • usr/lib/arb/bin/Restriction [amd64, i386]
  • usr/lib/arb/bin/Zuk_to_gen [amd64, i386]
  • usr/lib/arb/bin/arb_2_ascii [amd64, i386]
  • usr/lib/arb/bin/arb_2_bin [amd64, i386]
  • usr/lib/arb/bin/arb_a2ps [amd64, i386]
  • usr/lib/arb/bin/arb_consensus_tree [amd64, i386]
  • usr/lib/arb/bin/arb_convert_aln [amd64, i386]
  • usr/lib/arb/bin/arb_db_server [amd64, i386]
  • usr/lib/arb/bin/arb_dist [amd64, i386]
  • usr/lib/arb/bin/arb_dnarates [amd64, i386]
  • usr/lib/arb/bin/arb_edit4 [amd64, i386]
  • usr/lib/arb/bin/arb_export_rates [amd64, i386]
  • usr/lib/arb/bin/arb_export_tree [amd64, i386]
  • usr/lib/arb/bin/arb_flush_mem [amd64, i386]
  • usr/lib/arb/bin/arb_gene_probe [amd64, i386]
  • usr/lib/arb/bin/arb_help2xml [amd64, i386]
  • usr/lib/arb/bin/arb_message [amd64, i386]
  • usr/lib/arb/bin/arb_naligner [amd64, i386]
  • usr/lib/arb/bin/arb_name_server [amd64, i386]
  • usr/lib/arb/bin/arb_notify [amd64, i386]
  • usr/lib/arb/bin/arb_ntree [amd64, i386]
  • usr/lib/arb/bin/arb_pars [amd64, i386]
  • usr/lib/arb/bin/arb_phylo [amd64, i386]
  • usr/lib/arb/bin/arb_primer [amd64, i386]
  • usr/lib/arb/bin/arb_probe [amd64, i386]
  • usr/lib/arb/bin/arb_proto_2_xsub [amd64, i386]
  • usr/lib/arb/bin/arb_pt_server [amd64, i386]
  • usr/lib/arb/bin/arb_read_tree [amd64, i386]
  • usr/lib/arb/bin/arb_replace [amd64, i386]
  • usr/lib/arb/bin/arb_rnacma [amd64, i386]
  • usr/lib/arb/bin/arb_treegen [amd64, i386]
  • usr/lib/arb/bin/arb_wetc [amd64, i386]
  • usr/lib/arb/bin/axml [amd64, i386]
  • usr/lib/arb/bin/clustalv [amd64, i386]
  • usr/lib/arb/bin/count [amd64, i386]
  • usr/lib/arb/bin/findall [amd64, i386]
  • usr/lib/arb/bin/lsadt [amd64, i386]
  • usr/lib/arb/bin/sho_helix [amd64, i386]
  • usr/lib/arb/bin/varpos [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/arb/bin/CAP2 [amd64, i386]
  • usr/lib/arb/bin/Restriction [amd64, i386]
  • usr/lib/arb/bin/Zuk_to_gen [amd64, i386]
  • usr/lib/arb/bin/arb_a2ps [amd64, i386]
  • usr/lib/arb/bin/arb_treegen [amd64, i386]
  • usr/lib/arb/bin/axml [amd64, i386]
  • usr/lib/arb/bin/clustalv [amd64, i386]
  • usr/lib/arb/bin/count [amd64, i386]
  • usr/lib/arb/bin/findall [amd64, i386]
  • usr/lib/arb/bin/lsadt [amd64, i386]
  • usr/lib/arb/bin/sho_helix [amd64, i386]
  • usr/lib/arb/bin/varpos [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/arb/bin/arb_consensus_tree lengH length [amd64, i386]
  • usr/lib/arb/bin/arb_db_server doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_dist doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_edit4 Wont Won't [amd64, i386]
  • usr/lib/arb/bin/arb_edit4 doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_export_tree lengH length [amd64, i386]
  • usr/lib/arb/bin/arb_naligner aligne align [amd64, i386]
  • usr/lib/arb/bin/arb_naligner doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_naligner enought enough [amd64, i386]
  • usr/lib/arb/bin/arb_name_server doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_ntree Likelyhood Likelihood [amd64, i386]
  • usr/lib/arb/bin/arb_ntree Mor More [amd64, i386]
  • usr/lib/arb/bin/arb_ntree doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_ntree lengH length [amd64, i386]
  • usr/lib/arb/bin/arb_ntree pres press
  • usr/lib/arb/bin/arb_pars doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_probe doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_pt_server doesnt doesn't [amd64, i386]
• I spelling-error-in-copyright
  • explicite explicit [amd64, i386]
  • wont won't [amd64, i386]

arb-common

• W duplicate-changelog-files
  • usr/share/doc/arb-common/arb_CHANGES.txt.gz usr/share/doc/arb-common/changelog.gz usr/share/doc/arb/arb_CHANGES.txt.gz
• X duplicate-files
  • usr/share/doc/arb-common/arb_LICENSE.txt.gz usr/share/doc/arb/arb_LICENSE.txt.gz
  • usr/share/doc/arb-common/arb_README.txt.gz usr/share/doc/arb/arb_README.txt.gz
  • usr/share/doc/arb-common/examples/demo.arb.gz usr/share/doc/arb/examples/demo.arb.gz
• I package-contains-documentation-outside-usr-share-doc
  • usr/lib/arb/PERL_SCRIPTS/BIOPERL/README
  • usr/lib/arb/SH/README
  • usr/share/arb/motifHack/README
• I spelling-error-in-copyright
  • explicite explicit
  • wont won't
• I unused-override
  • package-contains-timestamped-gzip usr/lib/arb/lib/help/*.gz

arb-doc

• I spelling-error-in-copyright
  • explicite explicit
  • wont won't

libarb

• I hardening-no-bindnow
  • usr/lib/arb/lib/ARB.so [amd64, i386]
  • usr/lib/arb/lib/libARBDB.so [amd64, i386]
  • usr/lib/arb/lib/libAWT.so [amd64, i386]
  • usr/lib/arb/lib/libCORE.so [amd64, i386]
  • usr/lib/arb/lib/libWINDOW.so [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/arb/lib/libARBDB.so colums columns [amd64, i386]
• I spelling-error-in-copyright
  • explicite explicit [amd64, i386]
  • wont won't [amd64, i386]

libarb-dev

• I spelling-error-in-binary
  • usr/lib/arb/SL/TREE_WRITE/TREE_WRITE.a lengH length
• I spelling-error-in-copyright
  • explicite explicit
  • wont won't

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

arden

• X duplicate-files
  • usr/share/doc/arden/html/frames.html usr/share/doc/arden/html/index.html

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

art-nextgen-simulation-tools

• I spelling-error-in-binary
  • usr/bin/art_454 unreconized unrecognized [amd64, i386]
  • usr/bin/art_SOLiD lenght length [amd64, i386]
  • usr/bin/art_SOLiD unreconized unrecognized [amd64, i386]

art-nextgen-simulation-tools-profiles

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/art-nextgen-simulation-tools/ART_profiler_454/README
  • usr/share/art-nextgen-simulation-tools/ART_profiler_illumina/README

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 44)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-prebuilt-java-object
  • test/cobertura-lib/asm-6.0.jar
  • test/cobertura-lib/asm-analysis-6.0.jar
  • test/cobertura-lib/asm-commons-6.0.jar
  • test/cobertura-lib/asm-tree-6.0.jar
  • test/cobertura-lib/asm-util-6.0.jar
  • test/cobertura-lib/asm-xml-6.0.jar
  • test/cobertura-lib/cobertura-2.1.1.jar
  • test/cobertura-lib/commons-lang3-3.3.2.jar
  • test/cobertura-lib/hamcrest-core-1.3.jar
  • test/cobertura-lib/jaxen-1.1.4.jar
  • test/cobertura-lib/jetty-6.1.14.jar
  • test/cobertura-lib/jetty-util-6.1.14.jar
  • test/cobertura-lib/junit-4.11.jar
  • test/cobertura-lib/logback-classic-1.0.13.jar
  • test/cobertura-lib/logback-core-1.0.13.jar
  • test/cobertura-lib/oro-2.0.8.jar
  • test/cobertura-lib/servlet-api-2.5-6.1.14.jar
  • test/cobertura-lib/slf4j-api-1.7.5.jar
  • test/evosuite-lib/evosuite-1.0.5.jar
  • test/evosuite-lib/evosuite-standalone-runtime-1.0.5.jar
  • test/evosuite-lib/logback-classic-1.1.3.jar
  • test/evosuite-lib/slf4j-api-1.7.22.jar
  • test/jacoco-lib/jacocoagent.jar
  • test/jacoco-lib/jacocoant.jar

artemis

• I arch-dep-package-has-big-usr-share
  • 11283kB 100%
• X package-contains-no-arch-dependent-files

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

• X debian-watch-does-not-check-gpg-signature
• P no-dep5-copyright
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

artha

• X binary-file-built-without-LFS-support
  • usr/bin/artha
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• P copyright-with-old-dh-make-debian-copyright
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/artha.desktop

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://vina.scripps.edu/download.html
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P unversioned-copyright-format-uri
  • http://dep.debian.net/deps/dep5/

autodock-vina (1.1.2-5+b1; main)

• P debian-changelog-line-too-short
  • DEP5 (line 15) [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/vina [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/vina inconsisent inconsistent [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-2-download-page/
• P file-contains-trailing-whitespace
  • debian/changelog (line 178)
  • debian/changelog (line 211)
  • debian/changelog (line 260)
  • debian/control (line 83)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • autodock/Tests/AutoDockTools/

autodock

• X binary-file-built-without-LFS-support
  • usr/bin/autodock4
• I spelling-error-in-binary
  • usr/bin/autodock4 conect connect [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/autodock4.1.gz perfoms performs [amd64, i386]

autogrid

• X binary-file-built-without-LFS-support
  • usr/bin/autogrid4

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 1)
  • debian/rules (line 133)
• P package-does-not-install-examples
  • doc/examples/
• P package-uses-old-debhelper-compat-version
  • 11
• W python-foo-but-no-python3-foo
  • python-ball
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

ballview

• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/ballview.desktop [amd64, i386]
• W desktop-mime-but-no-exec-code
  • usr/share/applications/ballview.desktop [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/ballview/BALLView [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/ballview/BALLView dont don't [amd64, i386]
  • usr/lib/ballview/BALLView informations information [amd64, i386]

libball1.5

• X binary-file-built-without-LFS-support
  • usr/lib/libBALL.so.1.5 [amd64, i386]
• W dev-pkg-without-shlib-symlink
  • usr/lib/libBALL.so.1.5 usr/lib/libBALL.so [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/libBALL.so.1.5 [amd64, i386]
• I no-symbols-control-file
  • usr/lib/libBALL.so.1.5 [amd64, i386]
• X shlib-calls-exit
  • usr/lib/libBALL.so.1.5 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/libBALL.so.1.5 CONECT CONNECT [amd64, i386]
  • usr/lib/libBALL.so.1.5 Differnt Different [amd64, i386]
  • usr/lib/libBALL.so.1.5 childs children [amd64, i386]
  • usr/lib/libBALL.so.1.5 enought enough [amd64, i386]
  • usr/lib/libBALL.so.1.5 errorneous erroneous [amd64, i386]
  • usr/lib/libBALL.so.1.5 featues features [amd64, i386]
  • usr/lib/libBALL.so.1.5 implmented implemented [amd64, i386]
  • usr/lib/libBALL.so.1.5 paramters parameters [amd64, i386]
  • usr/lib/libBALL.so.1.5 registerd registered [amd64, i386]
  • usr/lib/libBALL.so.1.5 seperator separator [amd64, i386]
  • usr/lib/libBALL.so.1.5 standart standard [amd64, i386]
  • usr/lib/libBALL.so.1.5 unkown unknown [amd64, i386]
  • usr/lib/libBALL.so.1.5 woNT won't [amd64, i386]

libball1.5-dev

• W breaks-without-version
  • libball1.3-dev [amd64, i386]

libball1.5-doc

• X duplicate-files
  • usr/share/doc/libball1.5/html/BALL/d0/d11/a12635.html usr/share/doc/libball1.5/html/BALL/db/d7f/a12638.html
  • usr/share/doc/libball1.5/html/BALL/d0/d15/a12596.html usr/share/doc/libball1.5/html/BALL/da/d87/a12599.html
  • usr/share/doc/libball1.5/html/BALL/d2/d0c/a12611.html usr/share/doc/libball1.5/html/BALL/d4/dbf/a12614.html
  • usr/share/doc/libball1.5/html/BALL/search/all_0.js usr/share/doc/libball1.5/html/BALL/search/groups_0.js
  • usr/share/doc/libball1.5/html/BALL/search/all_1.js usr/share/doc/libball1.5/html/BALL/search/defines_0.js
  • usr/share/doc/libball1.5/html/BALL/search/all_1c.js usr/share/doc/libball1.5/html/BALL/search/functions_1a.js

libballview1.5

• W dev-pkg-without-shlib-symlink
  • usr/lib/libVIEW.so.1.5 usr/lib/libVIEW.so [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/libVIEW.so.1.5 [amd64, i386]
• I no-symbols-control-file
  • usr/lib/libVIEW.so.1.5 [amd64, i386]
• O package-name-doesnt-match-sonames
  • libVIEW1.5 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/libVIEW.so.1.5 "an other" "another" [amd64, i386]
  • usr/lib/libVIEW.so.1.5 Dont Don't [amd64, i386]
  • usr/lib/libVIEW.so.1.5 Informations Information [amd64, i386]
  • usr/lib/libVIEW.so.1.5 Uknown Unknown [amd64, i386]
  • usr/lib/libVIEW.so.1.5 beeing being [amd64, i386]
  • usr/lib/libVIEW.so.1.5 calulate calculate [amd64, i386]
  • usr/lib/libVIEW.so.1.5 choosen chosen [amd64, i386]
  • usr/lib/libVIEW.so.1.5 correspoding corresponding [amd64, i386]
  • usr/lib/libVIEW.so.1.5 doesnt doesn't [amd64, i386]
  • usr/lib/libVIEW.so.1.5 executeable executable [amd64, i386]
  • usr/lib/libVIEW.so.1.5 mininum minimum [amd64, i386]
  • usr/lib/libVIEW.so.1.5 orgin origin [amd64, i386]
  • usr/lib/libVIEW.so.1.5 reseting resetting [amd64, i386]
  • usr/lib/libVIEW.so.1.5 succesfully successfully [amd64, i386]
  • usr/lib/libVIEW.so.1.5 unkown unknown [amd64, i386]

libballview1.5-dev

• W breaks-without-version
  • libballview1.3-dev [amd64, i386]
• O package-contains-empty-directory
  • usr/lib/ [amd64, i386]

python-ball

• X package-contains-no-arch-dependent-files

• X debian-watch-does-not-check-gpg-signature
• X deprecated-configure-filename
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libbambamc0

• X binary-file-built-without-LFS-support
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
• I hardening-no-bindnow
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
  • usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
  • usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 22)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• P source-contains-empty-directory
  • lib/bundler/
• I testsuite-autopkgtest-missing

beast2-mcmc-doc

• I possible-documentation-but-no-doc-base-registration

beast2-mcmc-examples

• X duplicate-files
  • usr/share/doc/beast-mcmc/examples/nexus/26.nex.gz usr/share/doc/beast-mcmc/examples/nexus/gopher.nex.gz

• X debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

bedtools-test

• W executable-not-elf-or-script
  • usr/share/bedtools/data/knownGene.hg18.chr21.bed
  • usr/share/bedtools/test/sort/b.bed
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/bedtools/test/fisher/README.md
• W script-not-executable
  • usr/share/bedtools/test/bamtobed/test-bamtobed.sh
  • usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
  • usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
  • usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/closest/test-closest.sh
  • usr/share/bedtools/test/cluster/test-cluster.sh
  • usr/share/bedtools/test/complement/test-complement.sh
  • usr/share/bedtools/test/expand/test-expand.sh
  • usr/share/bedtools/test/fisher/cmp.sh
  • usr/share/bedtools/test/fisher/get.sh
  • usr/share/bedtools/test/fisher/shuf.sh
  • usr/share/bedtools/test/fisher/test-fisher.sh
  • usr/share/bedtools/test/flank/test-flank.sh
  • usr/share/bedtools/test/general/test-general.sh
  • usr/share/bedtools/test/getfasta/test-getfasta.sh
  • usr/share/bedtools/test/groupby/test-groupby.sh
  • usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
  • usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/intersect/test-intersect.sh
  • usr/share/bedtools/test/jaccard/test-jaccard.sh
  • usr/share/bedtools/test/makewindows/test-makewindows.sh
  • usr/share/bedtools/test/map/test-map.sh
  • usr/share/bedtools/test/merge/test-merge.sh
  • usr/share/bedtools/test/multicov/test-multicov.sh
  • usr/share/bedtools/test/negativecontrol/test-negativecontrol.sh
  • usr/share/bedtools/test/reldist/test-reldist.sh
  • usr/share/bedtools/test/sample/test-sample.sh
  • usr/share/bedtools/test/shift/test-shift.sh
  • usr/share/bedtools/test/shuffle/test-shuffle.sh
  • usr/share/bedtools/test/slop/test-slop.sh
  • usr/share/bedtools/test/sort/test-sort.sh
  • usr/share/bedtools/test/spacing/test-spacing.sh
  • usr/share/bedtools/test/split/test-split.sh
  • usr/share/bedtools/test/subtract/test-subtract.sh

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

biobambam2

• X binary-file-built-without-LFS-support
  • usr/bin/bamcollate2
  • usr/bin/bammdnm
  • usr/bin/bamstreamingmarkduplicates
  • usr/bin/bamtofastq
  • usr/bin/fastqtobampar
• W binary-without-manpage
  • usr/bin/bamalignfrac
  • usr/bin/bamauxmerge
  • usr/bin/bamexplode
  • usr/bin/bamfilterlength
  • usr/bin/bamfilternames
  • usr/bin/bamfilterrefid
  • usr/bin/bamheap2
  • usr/bin/bamintervalcommenthist
  • usr/bin/bamlastfilter
  • usr/bin/bammapdist
  • usr/bin/bamnumericalindex
  • usr/bin/bamranksort
  • usr/bin/bamrefextract
  • usr/bin/bamrefinterval
  • usr/bin/bamscrapcount
  • usr/bin/bamtagconversion
  • usr/bin/fastqtobampar
  • usr/bin/filtersam
  • usr/bin/kmerprob
• I hardening-no-fortify-functions
  • usr/bin/bamfilterheader2
  • usr/bin/fastqtobampar
• W manpage-has-errors-from-man
  • usr/share/man/man1/bammaskflags.1.gz 37: expected ';' after scale-indicator (got 'a')
• I spelling-error-in-binary
  • usr/bin/bam12auxmerge existant existent
  • usr/bin/bam12split existant existent
  • usr/bin/bam12strip existant existent
  • usr/bin/bamadapterclip existant existent
  • usr/bin/bamadapterfind existant existent
  • usr/bin/bamalignfrac existant existent
  • usr/bin/bamauxmerge existant existent
  • usr/bin/bamauxsort existant existent
  • usr/bin/bamcat existant existent
  • usr/bin/bamchecksort existant existent
  • usr/bin/bamclipreinsert existant existent
  • usr/bin/bamcollate existant existent
  • usr/bin/bamcollate2 existant existent
  • usr/bin/bamdownsamplerandom existant existent
  • usr/bin/bamexplode existant existent
  • usr/bin/bamfillquery existant existent
  • usr/bin/bamfilteraux existant existent
  • usr/bin/bamfilterflags existant existent
  • usr/bin/bamfilterheader existant existent
  • usr/bin/bamfilterlength existant existent
  • usr/bin/bamfiltermc existant existent
  • usr/bin/bamfilternames existant existent
  • usr/bin/bamfilterrefid existant existent
  • usr/bin/bamfilterrg existant existent
  • usr/bin/bamfixmateinformation existant existent
  • usr/bin/bamflagsplit existant existent
  • usr/bin/bamheap2 existant existent
  • usr/bin/bamindex existant existent
  • usr/bin/bamintervalcomment existant existent
  • usr/bin/bamintervalcommenthist existant existent
  • usr/bin/bamlastfilter existant existent
  • usr/bin/bammapdist existant existent
  • usr/bin/bammarkduplicates existant existent
  • usr/bin/bammarkduplicates2 existant existent
  • usr/bin/bammarkduplicatesopt existant existent
  • usr/bin/bammaskflags existant existent
  • usr/bin/bammdnm existant existent
  • usr/bin/bammerge existant existent
  • usr/bin/bamnumericalindex existant existent
  • usr/bin/bamrank existant existent
  • usr/bin/bamranksort existant existent
  • usr/bin/bamrecalculatecigar existant existent
  • usr/bin/bamrecompress existant existent
  • usr/bin/bamrefextract existant existent
  • usr/bin/bamrefinterval existant existent
  • usr/bin/bamreset existant existent
  • usr/bin/bamscrapcount existant existent
  • usr/bin/bamseqchksum existant existent
  • usr/bin/bamsormadup existant existent
  • usr/bin/bamsort existant existent
  • usr/bin/bamsplit existant existent
  • usr/bin/bamsplitdiv existant existent
  • usr/bin/bamstreamingmarkduplicates existant existent
  • usr/bin/bamtagconversion existant existent
  • usr/bin/bamtofastq existant existent
  • usr/bin/bamvalidate existant existent
  • usr/bin/bamvalidate successfull successful
  • usr/bin/bamzztoname existant existent
  • usr/bin/fastqtobam existant existent
  • usr/bin/filtersam existant existent
  • usr/bin/kmerprob occurences occurrences
  • usr/bin/lasToBAM existant existent
• I spelling-error-in-manpage
  • usr/share/man/man1/bamcollate2.1.gz auxilliary auxiliary
  • usr/share/man/man1/bammarkduplicates.1.gz "will be remove" "will be removed"
  • usr/share/man/man1/bammarkduplicates.1.gz constrast contrast
  • usr/share/man/man1/bammarkduplicates.1.gz ouptut output
  • usr/share/man/man1/bammarkduplicates2.1.gz "will be remove" "will be removed"
  • usr/share/man/man1/bammarkduplicates2.1.gz constrast contrast
  • usr/share/man/man1/bammarkduplicates2.1.gz ouptut output
  • usr/share/man/man1/bammarkduplicatesopt.1.gz "will be remove" "will be removed"
  • usr/share/man/man1/bammarkduplicatesopt.1.gz constrast contrast
  • usr/share/man/man1/bammarkduplicatesopt.1.gz ouptut output
  • usr/share/man/man1/bammdnm.1.gz auxilliary auxiliary
  • usr/share/man/man1/bamreset.1.gz auxilliary auxiliary
  • usr/share/man/man1/bamsort.1.gz constrast contrast
  • usr/share/man/man1/bamstreamingmarkduplicates.1.gz constrast contrast
  • usr/share/man/man1/bamstreamingmarkduplicates.1.gz constrast contrast
  • usr/share/man/man1/fastqtobam.1.gz identifer identifier

• W debhelper-but-no-misc-depends
  • libbiococoa-dev
  • libbiococoa2
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.bioinformatics.org/biococoa/downloads/
• P file-contains-trailing-whitespace
  • debian/changelog (line 87)
• P package-uses-old-debhelper-compat-version
  • 10
• P rules-requires-root-missing
• P source-contains-empty-directory
  • BCAppKit/2.0-cleanup/
  • BCFoundation/2.0-cleanup/
  • BCFoundation/Tests/TestFiles/
• I testsuite-autopkgtest-missing

libbiococoa-dev (2.2.2-4+b1; main)

• P debian-changelog-line-too-short
  • DEP5 (line 4) [amd64, i386]
• I possible-documentation-but-no-doc-base-registration

libbiococoa2 (2.2.2-4+b1; main)

• X binary-file-built-without-LFS-support
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
• P debian-changelog-line-too-short
  • DEP5 (line 4)
• I hardening-no-bindnow
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
• X shlib-calls-exit
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2

• X debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • reports/
• I testsuite-autopkgtest-missing

libbiojava-java

• I javalib-but-no-public-jars
• I possible-documentation-but-no-doc-base-registration

libbiojava-java-demos

• X duplicate-files
  • usr/share/doc/libbiojava-java-demos/examples/dp/fake.fasta.gz usr/share/doc/libbiojava-java-demos/examples/files/fake.fasta.gz
  • usr/share/doc/libbiojava-java-demos/examples/dp/fakepromoter.xml.gz usr/share/doc/libbiojava-java-demos/examples/files/fakepromoter.xml.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/AL121903.embl.gz usr/share/doc/libbiojava-java-demos/examples/gff/AL121903.embl.gz usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.embl.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/AL121903.genbank.gz usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.genbank.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/varC4-2.gff.gz usr/share/doc/libbiojava-java-demos/examples/gff/varC4-2.gff.gz

libbiojava-java-doc

• X duplicate-files
  • usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js usr/share/doc/libbiojava-java/api/jquery/jquery-3.3.1.js
• W embedded-javascript-library
  • usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 119)
  • debian/changelog (line 167)
• X libmodule-build-perl-needs-to-be-in-build-depends
• P rules-requires-root-missing
• X upstream-metadata-file-is-missing

bioperl-run

• O script-with-language-extension
  • usr/bin/bp_multi_hmmsearch.pl
  • usr/bin/bp_panalysis.pl
  • usr/bin/bp_papplmaker.pl
  • usr/bin/bp_run_neighbor.pl
  • usr/bin/bp_run_protdist.pl
• I unused-override
  • script-with-language-extension usr/bin/bp_bioperl_application_installer.pl

libbio-perl-run-perl

• I extended-description-is-probably-too-short
• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::FastTree.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Raxml.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Primate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Prints.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Profile.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Signalp.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::TribeMCL.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Vista.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::DB::SoapEUtilities::Result.3pm.gz:419
  • usr/share/man/man3/Bio::Tools::Run::ERPIN.3pm.gz:321
• I spelling-error-in-manpage
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz arugment argument
  • usr/share/man/man3/Bio::Tools::Run::Analysis::soap.3pm.gz "allows to" "allows one to"
  • usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm.gz argment argument
  • usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm.gz retrive retrieve
  • usr/share/man/man3/Bio::Tools::Run::Hmmer.3pm.gz specifiy specify
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phast::PhyloFit.3pm.gz flexability flexibility
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Neighbor.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm.gz documetation documentation
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz bootstap bootstrap
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz orginal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phyml.3pm.gz explicitely explicitly
  • usr/share/man/man3/Bio::Tools::Run::StandAloneBlastPlus.3pm.gz exeception exception

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://eddylab.org/software/squid/
• P file-contains-trailing-whitespace
  • debian/changelog (line 127)
  • debian/changelog (line 36)
  • debian/changelog (line 38)
  • debian/changelog (line 39)
  • debian/changelog (line 41)
  • debian/changelog (line 42)
  • debian/changelog (line 44)
  • debian/changelog (line 45)
  • debian/changelog (line 46)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • Scripts/
  • Shiva/

biosquid

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/revcomp [amd64, i386]

libsquid-dev

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]

libsquid1

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libsquid.so.1.0.0 [amd64, i386]
  • usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 [amd64, i386]
• X shlib-calls-exit
  • usr/lib/i386-linux-gnu/libsquid.so.1.0.0 [amd64, i386]
  • usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

bitseq

• W binary-without-manpage
  • usr/bin/biocUpdate [amd64, i386]
  • usr/bin/checkTR [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/LGPL [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/estimateDE trasposed transposed [amd64, i386]
  • usr/bin/estimateHyperPar trasposed transposed [amd64, i386]
  • usr/bin/extractSamples trasposed transposed [amd64, i386]
  • usr/bin/getFoldChange trasposed transposed [amd64, i386]
  • usr/bin/getGeneExpression LengH Length [amd64, i386]
  • usr/bin/getGeneExpression trasposed transposed [amd64, i386]
  • usr/bin/getPPLR trasposed transposed [amd64, i386]
  • usr/bin/getVariance trasposed transposed [amd64, i386]
  • usr/bin/getWithinGeneExpression LengH Length [amd64, i386]
  • usr/bin/getWithinGeneExpression trasposed transposed [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

blasr

• I hardening-no-bindnow
  • usr/bin/blasr
  • usr/bin/sawriter
• O hardening-no-fortify-functions
  • usr/bin/blasr

• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

blends-common

• O executable-menu-file
  • usr/share/menu/blend-menu 0755
• E missing-depends-on-sensible-utils
  • usr/share/menu/blend-menu
• O postinst-does-not-call-updatemenus
  • usr/share/menu/blend-menu

blends-dev

• I unused-override
  • binary-package-depends-on-toolchain-package depends: debhelper (>= 9)

• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

blends-common

• O executable-menu-file
  • usr/share/menu/blend-menu 0755
• O postinst-does-not-call-updatemenus
  • usr/share/menu/blend-menu

blends-dev

• I unused-override
  • binary-package-depends-on-toolchain-package depends: debhelper (>= 9)

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/blimps-([0-9.]+)\.tar\.gz
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

blimps-examples

• X duplicate-files
  • usr/share/doc/blimps-examples/examples/processor/distribution/fasta.in.seqs usr/share/doc/blimps-examples/examples/processor/distribution/stockholm.in.seqs
• X package-contains-no-arch-dependent-files

blimps-utils

• X duplicate-files
  • usr/share/doc/blimps-utils/html/biased_blocks.html usr/share/doc/blimps-utils/html/biassed_blocks.html

libblimps3

• I no-symbols-control-file
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0
• X shlib-calls-exit
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0
• I spelling-error-in-binary
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 nam name
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 occured occurred
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 outputing outputting
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 retur return

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing

bowtie

• O binary-without-manpage
  • usr/bin/bowtie-align-l
  • usr/bin/bowtie-align-l-debug
  • usr/bin/bowtie-align-s
  • usr/bin/bowtie-align-s-debug
  • usr/bin/bowtie-build-l
  • usr/bin/bowtie-build-l-debug
  • usr/bin/bowtie-build-s
  • usr/bin/bowtie-build-s-debug
  • usr/bin/bowtie-inspect-l
  • usr/bin/bowtie-inspect-l-debug
  • usr/bin/bowtie-inspect-s
  • usr/bin/bowtie-inspect-s-debug
• X duplicate-files
  • usr/share/doc/bowtie/tests/example1.out usr/share/doc/bowtie/tests/example3.out usr/share/doc/bowtie/tests/example8.out
  • usr/share/doc/bowtie/tests/example6.out usr/share/doc/bowtie/tests/example9.out

• X debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

boxshade

• X binary-file-built-without-LFS-support
  • usr/lib/boxshade/boxshade

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 6)
  • debian/changelog (line 73)
  • debian/rules (line 12)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

bppphyview

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• I extended-description-is-probably-too-short
• I spelling-error-in-copyright
  • therefor therefore

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 153)
  • debian/changelog (line 48)
  • debian/changelog (line 54)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

bppsuite

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/bppdist [amd64, i386]
  • usr/bin/bppmixedlikelihoods [amd64, i386]
  • usr/bin/bpppopstats [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/bppalnscore occurence occurrence [amd64, i386]
  • usr/bin/bppancestor particularily particularly [amd64, i386]
  • usr/bin/bppmixedlikelihoods particularily particularly [amd64, i386]
  • usr/bin/bppml particularily particularly [amd64, i386]
  • usr/bin/bpppopstats ouptut output [amd64, i386]
  • usr/bin/bppseqgen begining beginning [amd64, i386]
  • usr/bin/bpptreedraw controler controller [amd64, i386]
• I spelling-error-in-copyright
  • therefor therefore [amd64, i386]

bppsuite-examples

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• X duplicate-files
  • usr/share/doc/bppsuite-examples/examples/MaximumLikelihood/Nucleotides/Homogeneous/Ancestor.bpp usr/share/doc/bppsuite-examples/examples/MaximumLikelihood/Nucleotides/NonHomogeneousGeneral/Ancestor.bpp
• I spelling-error-in-copyright
  • therefor therefore

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.4.0)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • bin/
  • lib/
• I testsuite-autopkgtest-missing

brig

• W bad-jar-name
  • usr/share/java/BRIG-0.95.jar [amd64, i386]
• W binary-without-manpage
  • usr/bin/brig [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• X package-contains-no-arch-dependent-files
• W spelling-error-in-readme-debian
  • inconvinience inconvenience [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.4.1)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

bwa

• I spelling-error-in-manpage
  • usr/share/man/man1/bwa.1.gz extentions extensions
  • usr/share/man/man1/bwa.1.gz occurence occurrence
  • usr/share/man/man1/bwa.1.gz openning opening
  • usr/share/man/man1/bwa.1.gz ouptut output
  • usr/share/man/man1/bwa.1.gz overriden overridden

• I debian-rules-parses-dpkg-parsechangelog
  • (line 9)
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 7)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

cain

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/cain.desktop
• I package-contains-documentation-outside-usr-share-doc
  • usr/include/cain/loki/readme.txt

cain-examples

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/cain/examples/cain/dsmts23/Readme.txt
  • usr/share/cain/examples/sbml/dsmts31/README.txt

• X debian-watch-does-not-check-gpg-signature
• P package-does-not-install-examples
  • sdk/libraries/qtpropertybrowser/examples/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

libcamitk-dev

• W breaks-without-version
  • libvtk6-dev [amd64, i386]
  • libvtk6-java [amd64, i386]
  • libvtk6-jni [amd64, i386]
  • libvtk6-qt-dev [amd64, i386]
• X development-package-ships-elf-binary-in-path
  • usr/bin/camitk-cepgenerator [amd64, i386]
  • usr/bin/camitk-testactions [amd64, i386]
  • usr/bin/camitk-testcomponents [amd64, i386]
  • usr/bin/camitk-wizard [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/camitk-testcomponents [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/camitk-wizard exemple example [amd64, i386]
  • usr/bin/camitk-wizard leAT least [amd64, i386]
  • usr/bin/camitk-wizard wether whether [amd64, i386]

libcamitk4

• I no-symbols-control-file
  • usr/lib/libcamitkcore.so.4.1.2 [amd64, i386]
  • usr/lib/libmonitoring.so.4.1.2 [amd64, i386]
• O package-name-doesnt-match-sonames
  • libcamitkcore4 libmonitoring4 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/camitk-4.1/actions/libmml.so.4.1.2 Pres Press [amd64, i386]
  • usr/lib/camitk-4.1/components/libdicom.so.4.1.2 Serie Series [amd64, i386]
  • usr/lib/camitk-4.1/components/libpmlcomponent.so.4.1.2 THETRAHEDRON TETRAHEDRON [amd64, i386]
  • usr/lib/libcamitkcore.so.4.1.2 Substract Subtract [amd64, i386]
  • usr/lib/libmonitoring.so.4.1.2 Pres Press [amd64, i386]
  • usr/lib/libmonitoring.so.4.1.2 THETRAHEDRON TETRAHEDRON [amd64, i386]
  • usr/lib/libmonitoring.so.4.1.2 ment meant [amd64, i386]

libcamitk4-data

• I duplicated-compressed-file
  • usr/share/camitk-4.1/testdata/BigEndianCompressed.img.gz

libqtpropertybrowser-dev

• X package-contains-no-arch-dependent-files

libqtpropertybrowser4

• I no-symbols-control-file
  • usr/lib/libqtpropertybrowser.so.4.1.2 [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• W debian-watch-file-should-mangle-version
  • line 3
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • bin/lib/
  • db/cogs/
  • db/comparison_genomes/
  • sample_projects/sample_project_1/analysis/
  • sample_projects/sample_project_2/analysis/
  • sample_projects/sample_project_3/analysis/
  • sample_projects/sample_project_4/blast/
  • sample_projects/sample_project_5/analysis/
  • sample_projects/sample_project_5/blast/
  • sample_projects/sample_project_6/analysis/
  • sample_projects/sample_project_6/features/
  • sample_projects/test_blastn/analysis/
  • sample_projects/test_blastn/features/
  • sample_projects/test_blastp/analysis/
  • sample_projects/test_blastp/blast/blast_db/
  • sample_projects/test_blastp/blast/blast_results_local/
  • sample_projects/test_blastp/comparison_genomes/proteins/
  • sample_projects/test_blastp/features/
  • sample_projects/test_blastx/analysis/
  • sample_projects/test_blastx/blast/blast_db/
  • sample_projects/test_blastx/blast/blast_results_local/
  • sample_projects/test_blastx/comparison_genomes/proteins/
  • sample_projects/test_blastx/features/
  • sample_projects/test_orfs/analysis/
  • sample_projects/test_orfs/blast/
  • sample_projects/test_orfs/comparison_genomes/
  • sample_projects/test_orfs/features/
  • sample_projects/test_plots/analysis/
  • sample_projects/test_plots/blast/
  • sample_projects/test_plots/comparison_genomes/
  • sample_projects/test_plots/features/
  • sample_projects/test_tblastn/analysis/
  • sample_projects/test_tblastn/features/
  • sample_projects/test_tblastx/analysis/
  • sample_projects/test_tblastx/features/

cct

• W executable-not-elf-or-script
  • usr/share/cct/lib/assign_cogs/assign_cogs.pl
  • usr/share/cct/lib/cgview_xml_builder/cgview_xml_builder.pl
  • usr/share/cct/lib/convert_vcf_to_features/test.sh
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/cct/lib/assign_cogs/README.txt
  • usr/share/cct/lib/cgview_xml_builder/README.txt
  • usr/share/cct/lib/convert_vcf_to_features/README.txt
  • usr/share/cct/lib/get_cds/README.txt
  • usr/share/cct/lib/get_orfs/README.txt
  • usr/share/cct/lib/local_blast_client/README.txt
  • usr/share/cct/lib/ncbi_search/README.txt
  • usr/share/cct/lib/sequence_to_multi_fasta/README.txt

cct-examples

• X duplicate-files
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_2/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_3/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_4/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_5/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_6/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastn/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastp/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastx/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_orfs/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_plots/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_tblastn/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/cgview_xml_builder.pl.gz
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_a.png usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_b.png
  • usr/share/doc/cct/examples/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk.gz usr/share/doc/cct/examples/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_end_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_end_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_end_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_end_of_orf_rev_comp.fasta
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  • usr/share/doc/cimg-dev/html/img/video_landscape.html [<embed src="http://www.youtube.com/v/i8_wcewwpoo?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/i8_wcewwpoo?version=3)
  • usr/share/doc/cimg-dev/html/img/video_mandelbrot.html [<embed src="http://www.youtube.com/v/ir80v5r9ajm?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ir80v5r9ajm?version=3)
  • usr/share/doc/cimg-dev/html/img/video_menu.html [<embed src="http://www.youtube.com/v/t0tjzmytisg?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/t0tjzmytisg?version=3)
  • usr/share/doc/cimg-dev/html/img/video_metaballs.html [<embed src="http://www.youtube.com/v/-s_r76oxzyy?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/-s_r76oxzyy?version=3)
  • usr/share/doc/cimg-dev/html/img/video_minipaint.html [<embed src="http://www.youtube.com/v/4hbisksvzki?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/4hbisksvzki?version=3)
  • usr/share/doc/cimg-dev/html/img/video_plasma.html [<embed src="http://www.youtube.com/v/na8hcaykbfo?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/na8hcaykbfo?version=3)
  • usr/share/doc/cimg-dev/html/img/video_reflection.html [<embed src="http://www.youtube.com/v/5wqgkejdrcw?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/5wqgkejdrcw?version=3)
  • usr/share/doc/cimg-dev/html/img/video_shadebobs.html [<embed src="http://www.youtube.com/v/q91cyn6x8ly?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/q91cyn6x8ly?version=3)
  • usr/share/doc/cimg-dev/html/img/video_tetris.html [<embed src="http://www.youtube.com/v/iksy2kceh38?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/iksy2kceh38?version=3)
  • usr/share/doc/cimg-dev/html/img/video_waves.html [<embed src="http://www.youtube.com/v/kne-rxjlddm?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/kne-rxjlddm?version=3)
• I spelling-error-in-copyright
  • therefor therefore

cimg-examples

• I spelling-error-in-copyright
  • therefor therefore

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://circos.ca/software/download
• P rules-requires-root-missing

circos

• X duplicate-files
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.10e6.txt usr/share/doc/circos/examples/data/heatmap.hs.rn.10e6.txt
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.20e6.txt usr/share/doc/circos/examples/data/heatmap.hs.rn.20e6.txt
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.50e6.txt usr/share/doc/circos/examples/data/heatmap.hs.rn.50e6.txt
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.5e6.txt usr/share/doc/circos/examples/data/heatmap.hs.rn.5e6.txt
  • usr/share/doc/circos/examples/data/karyotype/dm6.hires.txt usr/share/doc/circos/examples/data/karyotype/dm6.lowres.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.arabidopsis.tair10.txt usr/share/doc/circos/examples/data/karyotype/karyotype.arabidopsis.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.chimp.pt4.txt usr/share/doc/circos/examples/data/karyotype/karyotype.chimp.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.drosophila.dm6.hires.txt usr/share/doc/circos/examples/data/karyotype/karyotype.drosophila.dm6.lowres.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.drosophila.lowres.dm3.txt usr/share/doc/circos/examples/data/karyotype/karyotype.drosophila.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.human.hg19.txt usr/share/doc/circos/examples/data/karyotype/karyotype.human.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.mouse.mm10.txt usr/share/doc/circos/examples/data/karyotype/karyotype.mouse.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.rat.rn4.txt usr/share/doc/circos/examples/data/karyotype/karyotype.rat.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.rm.3.txt usr/share/doc/circos/examples/data/karyotype/karyotype.rm.txt
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/circos.1.gz
• I spelling-error-in-manpage
  • usr/share/man/man1/circos.1.gz overide override
  • usr/share/man/man1/circos.1.gz unuseable unusable

fonts-circos-symbols

• I font-outside-font-dir
  • usr/share/circos/fonts/symbols/circossymbols.otf

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://circos.ca/software/download
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • tools/binlinks/doc/
  • tools/resample/etc/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

circos-tools

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/circos/tools/clustal2link/1/README
  • usr/share/circos/tools/clustal2link/README
  • usr/share/circos/tools/connectogram/README
  • usr/share/circos/tools/tableviewer/README
• I package-contains-empty-directory
  • usr/share/circos/tools/binlinks/doc/
  • usr/share/circos/tools/resample/etc/

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bioinformatics.hungry.com/clearcut/clearcut-([0-9.]+).tar.gz
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.4.1)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

clearcut

• X binary-file-built-without-LFS-support
  • usr/bin/clearcut [amd64, i386]
• I hardening-no-bindnow
  • usr/bin/clearcut [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/clearcut [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.xavierdidelot.xtreemhost.com/clonalframe.htm
• P rules-requires-root-missing

clonalframe

• X binary-file-built-without-LFS-support
  • usr/bin/ClonalFrame

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.4.1)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

clonalframeml

• I hardening-no-fortify-functions
  • usr/bin/ClonalFrameML [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

clonalorigin

• X binary-file-built-without-LFS-support
  • usr/bin/warg [amd64, i386]
• W binary-without-manpage
  • usr/bin/blocksplit [amd64, i386]
  • usr/bin/computeMedians [amd64, i386]
  • usr/bin/makeMauveWargFile [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/warg lik link [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/omega/clustal-omega-(.*)\.tar\.gz
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

clustalo

• X binary-file-built-without-LFS-support
  • usr/bin/clustalo [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/clustalo exceded exceeded [amd64, i386]
  • usr/bin/clustalo occured occurred [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/download/current/clustalw-([\.\d]*).tar.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 123)
  • debian/changelog (line 155)
  • debian/changelog (line 202)
  • debian/changelog (line 274)
  • debian/changelog (line 345)
  • debian/changelog (line 377)
  • debian/changelog (line 385)
  • debian/control (line 33)
  • debian/rules (line 19)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

clustalw

• X binary-file-built-without-LFS-support
  • usr/bin/clustalw

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/download/current/clustalx-([\.\d]*).tar.gz
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bonsai.hgc.jp/~mdehoon/software/cluster/software.htm
• P file-contains-trailing-whitespace
  • debian/changelog (line 93)
  • debian/rules (line 26)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 89)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

ncoils

• X binary-file-built-without-LFS-support
  • usr/bin/ncoils [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/ncoils [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• O debian-watch-file-should-mangle-version
  • line 3
• X non-consecutive-debian-revision
  • 0.1+dfsg.1-2 -> 0.1+dfsg.1-4
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • bin/
  • lib/

concavity

• X binary-file-built-without-LFS-support
  • usr/bin/concavity

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 28)
  • debian/changelog (line 31)
  • debian/rules (line 55)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

conservation-code

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://gforge.inria.fr/frs/?group_id=3008
• P rules-requires-root-missing

crac

• W binary-without-manpage
  • usr/bin/crac-client
  • usr/bin/crac-index
• X duplicate-files
  • usr/share/doc/crac/examples/test_f/bug/bug-15677-genome.conf usr/share/doc/crac/examples/test_f/bug/bug-16581-genome.conf
  • usr/share/doc/crac/examples/test_f/bug/bug-15677-genome.ssa usr/share/doc/crac/examples/test_f/bug/bug-16581-genome.ssa
  • usr/share/doc/crac/examples/test_f/bug/bug-17175-2-reads.fa usr/share/doc/crac/examples/test_f/bug/tmp-reads.fa
  • usr/share/doc/crac/examples/test_f/index_genomes.sh.trs usr/share/doc/crac/examples/test_f/launch_sg.sh.trs usr/share/doc/crac/examples/test_f/test_index.sh.trs
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/crac.1.gz
• I spelling-error-in-binary
  • usr/bin/crac Erorr Error
  • usr/bin/crac alignement alignment
  • usr/bin/crac informations information
  • usr/bin/crac sould should
  • usr/bin/crac-index informations information
• I spelling-error-in-copyright
  • therefor therefore
• I spelling-error-in-manpage
  • usr/share/man/man1/crac.1.gz alignement alignment
  • usr/share/man/man1/crac.1.gz differents different
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz softwares software

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 9
• P rules-requires-root-missing
• P source-contains-hg-tags-file
  • .hgtags
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

python-cram

• X application-in-library-section
  • python usr/bin/cram
• W binary-without-manpage
  • usr/bin/cram
• X library-package-name-for-application
  • usr/bin/cram

python3-cram

• X application-in-library-section
  • python usr/bin/cram3
• W binary-without-manpage
  • usr/bin/cram3
• X library-package-name-for-application
  • usr/bin/cram3

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 186)
  • debian/changelog (line 187)
  • debian/changelog (line 228)
  • debian/changelog (line 252)
  • debian/changelog (line 258)
  • debian/changelog (line 266)
  • debian/changelog (line 272)
  • debian/changelog (line 280)
  • debian/changelog (line 282)
  • debian/changelog (line 302)
  • debian/changelog (line 304)
  • debian/changelog (line 316)
  • debian/changelog (line 320)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

ctn (3.2.0~dfsg-6+b1; main)

• X binary-file-built-without-LFS-support
  • usr/bin/archive_agent [amd64, i386]
  • usr/bin/archive_cleaner [amd64, i386]
  • usr/bin/archive_server [amd64, i386]
  • usr/bin/clone_study [amd64, i386]
  • usr/bin/commit_agent [amd64, i386]
  • usr/bin/create_greyscale_module [amd64, i386]
  • usr/bin/create_print_entry [amd64, i386]
  • usr/bin/ctndisp [amd64, i386]
  • usr/bin/ctnnetwork [amd64, i386]
  • usr/bin/dcm_add_fragments [amd64, i386]
  • usr/bin/dcm_create_object [amd64, i386]
  • usr/bin/dcm_ctnto10 [amd64, i386]
  • usr/bin/dcm_diff [amd64, i386]
  • usr/bin/dcm_dump_compressed [amd64, i386]
  • usr/bin/dcm_dump_element [amd64, i386]
  • usr/bin/dcm_dump_file [amd64, i386]
  • usr/bin/dcm_make_object [amd64, i386]
  • usr/bin/dcm_map_to_8 [amd64, i386]
  • usr/bin/dcm_mask_image [amd64, i386]
  • usr/bin/dcm_modify_elements [amd64, i386]
  • usr/bin/dcm_modify_object [amd64, i386]
  • usr/bin/dcm_print_dictionary [amd64, i386]
  • usr/bin/dcm_resize [amd64, i386]
  • usr/bin/dcm_rm_element [amd64, i386]
  • usr/bin/dcm_rm_group [amd64, i386]
  • usr/bin/dcm_snoop [amd64, i386]
  • usr/bin/dcm_strip_odd_groups [amd64, i386]
  • usr/bin/dcm_template [amd64, i386]
  • usr/bin/dcm_to_html [amd64, i386]
  • usr/bin/dcm_to_text [amd64, i386]
  • usr/bin/dcm_verify [amd64, i386]
  • usr/bin/dcm_vr_patterns [amd64, i386]
  • usr/bin/dcm_x_disp [amd64, i386]
  • usr/bin/dicom_echo [amd64, i386]
  • usr/bin/dump_commit_requests [amd64, i386]
  • usr/bin/enq_ctndisp [amd64, i386]
  • usr/bin/enq_ctnnetwork [amd64, i386]
  • usr/bin/ex1_initiator [amd64, i386]
  • usr/bin/ex2_initiator [amd64, i386]
  • usr/bin/ex3_acceptor [amd64, i386]
  • usr/bin/ex3_initiator [amd64, i386]
  • usr/bin/ex4_acceptor [amd64, i386]
  • usr/bin/ex4_initiator [amd64, i386]
  • usr/bin/fillImageDB [amd64, i386]
  • usr/bin/fillRSA [amd64, i386]
  • usr/bin/fillRSAImpInterp [amd64, i386]
  • usr/bin/fis_server [amd64, i386]
  • usr/bin/gqinitq [amd64, i386]
  • usr/bin/gqkillq [amd64, i386]
  • usr/bin/icon_append_file [amd64, i386]
  • usr/bin/icon_append_index [amd64, i386]
  • usr/bin/icon_dump_file [amd64, i386]
  • usr/bin/icon_dump_index [amd64, i386]
  • usr/bin/image_server [amd64, i386]
  • usr/bin/kill_ctndisp [amd64, i386]
  • usr/bin/kill_ctnnetwork [amd64, i386]
  • usr/bin/load_control [amd64, i386]
  • usr/bin/mwlQuery [amd64, i386]
  • usr/bin/pq_ctndisp [amd64, i386]
  • usr/bin/pq_ctnnetwork [amd64, i386]
  • usr/bin/print_client [amd64, i386]
  • usr/bin/print_mgr [amd64, i386]
  • usr/bin/print_server [amd64, i386]
  • usr/bin/print_server_display [amd64, i386]
  • usr/bin/ris_gateway [amd64, i386]
  • usr/bin/send_image [amd64, i386]
  • usr/bin/send_results [amd64, i386]
  • usr/bin/send_study [amd64, i386]
  • usr/bin/simple_pacs [amd64, i386]
  • usr/bin/simple_storage [amd64, i386]
  • usr/bin/snp_to_files [amd64, i386]
  • usr/bin/storage_classes [amd64, i386]
  • usr/bin/storage_commit [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/archive_agent Modifer Modifier [amd64, i386]
  • usr/bin/archive_agent Unexepected Unexpected [amd64, i386]
  • usr/bin/archive_agent ment meant [amd64, i386]
  • usr/bin/archive_agent tranport transport [amd64, i386]
  • usr/bin/archive_agent uniqe unique [amd64, i386]
  • usr/bin/archive_cleaner Modifer Modifier [amd64, i386]
  • usr/bin/archive_cleaner Unexepected Unexpected [amd64, i386]
  • usr/bin/archive_cleaner ment meant [amd64, i386]
  • usr/bin/archive_cleaner tranport transport [amd64, i386]
  • usr/bin/archive_cleaner uniqe unique [amd64, i386]
  • usr/bin/archive_server Modifer Modifier [amd64, i386]
  • usr/bin/archive_server Unexepected Unexpected [amd64, i386]
  • usr/bin/archive_server ment meant [amd64, i386]
  • usr/bin/archive_server tranport transport [amd64, i386]
  • usr/bin/archive_server uniqe unique [amd64, i386]
  • usr/bin/clone_study uniqe unique [amd64, i386]
  • usr/bin/commit_agent Modifer Modifier [amd64, i386]
  • usr/bin/commit_agent Unexepected Unexpected [amd64, i386]
  • usr/bin/commit_agent ment meant [amd64, i386]
  • usr/bin/commit_agent tranport transport [amd64, i386]
  • usr/bin/commit_agent uniqe unique [amd64, i386]
  • usr/bin/create_greyscale_module Modifer Modifier [amd64, i386]
  • usr/bin/create_greyscale_module ment meant [amd64, i386]
  • usr/bin/create_print_entry Modifer Modifier [amd64, i386]
  • usr/bin/create_print_entry Unexepected Unexpected [amd64, i386]
  • usr/bin/create_print_entry ment meant [amd64, i386]
  • usr/bin/create_print_entry tranport transport [amd64, i386]
  • usr/bin/create_print_entry uniqe unique [amd64, i386]
  • usr/bin/ctndisp Modifer Modifier [amd64, i386]
  • usr/bin/ctndisp ment meant [amd64, i386]
  • usr/bin/dcm_add_fragments Modifer Modifier [amd64, i386]
  • usr/bin/dcm_add_fragments ment meant [amd64, i386]
  • usr/bin/dcm_create_object Modifer Modifier [amd64, i386]
  • usr/bin/dcm_create_object ment meant [amd64, i386]
  • usr/bin/dcm_ctnto10 Modifer Modifier [amd64, i386]
  • usr/bin/dcm_ctnto10 ment meant [amd64, i386]
  • usr/bin/dcm_diff Modifer Modifier [amd64, i386]
  • usr/bin/dcm_diff ment meant [amd64, i386]
  • usr/bin/dcm_dump_compressed Modifer Modifier [amd64, i386]
  • usr/bin/dcm_dump_compressed ment meant [amd64, i386]
  • usr/bin/dcm_dump_element Modifer Modifier [amd64, i386]
  • usr/bin/dcm_dump_element ment meant [amd64, i386]
  • usr/bin/dcm_dump_file Modifer Modifier [amd64, i386]
  • usr/bin/dcm_dump_file ment meant [amd64, i386]
  • usr/bin/dcm_make_object Modifer Modifier [amd64, i386]
  • usr/bin/dcm_make_object ment meant [amd64, i386]
  • usr/bin/dcm_map_to_8 Modifer Modifier [amd64, i386]
  • usr/bin/dcm_map_to_8 ment meant [amd64, i386]
  • usr/bin/dcm_mask_image Modifer Modifier [amd64, i386]
  • usr/bin/dcm_mask_image ment meant [amd64, i386]
  • usr/bin/dcm_modify_elements Modifer Modifier [amd64, i386]
  • usr/bin/dcm_modify_elements ment meant [amd64, i386]
  • usr/bin/dcm_modify_object Modifer Modifier [amd64, i386]
  • usr/bin/dcm_modify_object decription description [amd64, i386]
  • usr/bin/dcm_modify_object ment meant [amd64, i386]
  • usr/bin/dcm_print_dictionary Modifer Modifier [amd64, i386]
  • usr/bin/dcm_print_dictionary uniqe unique [amd64, i386]
  • usr/bin/dcm_resize Modifer Modifier [amd64, i386]
  • usr/bin/dcm_resize ment meant [amd64, i386]
  • usr/bin/dcm_rm_element Modifer Modifier [amd64, i386]
  • usr/bin/dcm_rm_element ment meant [amd64, i386]
  • usr/bin/dcm_rm_group Modifer Modifier [amd64, i386]
  • usr/bin/dcm_rm_group ment meant [amd64, i386]
  • usr/bin/dcm_snoop Modifer Modifier [amd64, i386]
  • usr/bin/dcm_snoop ment meant [amd64, i386]
  • usr/bin/dcm_snoop tranport transport [amd64, i386]
  • usr/bin/dcm_snoop uniqe unique [amd64, i386]
  • usr/bin/dcm_strip_odd_groups Modifer Modifier [amd64, i386]
  • usr/bin/dcm_strip_odd_groups ment meant [amd64, i386]
  • usr/bin/dcm_template Modifer Modifier [amd64, i386]
  • usr/bin/dcm_template ment meant [amd64, i386]
  • usr/bin/dcm_to_html Modifer Modifier [amd64, i386]
  • usr/bin/dcm_to_html ment meant [amd64, i386]
  • usr/bin/dcm_to_text Modifer Modifier [amd64, i386]
  • usr/bin/dcm_to_text ment meant [amd64, i386]
  • usr/bin/dcm_verify Modifer Modifier [amd64, i386]
  • usr/bin/dcm_verify ment meant [amd64, i386]
  • usr/bin/dcm_vr_patterns Modifer Modifier [amd64, i386]
  • usr/bin/dcm_vr_patterns ment meant [amd64, i386]
  • usr/bin/dcm_x_disp Modifer Modifier [amd64, i386]
  • usr/bin/dcm_x_disp ment meant [amd64, i386]
  • usr/bin/dicom_echo Modifer Modifier [amd64, i386]
  • usr/bin/dicom_echo Unexepected Unexpected [amd64, i386]
  • usr/bin/dicom_echo ment meant [amd64, i386]
  • usr/bin/dicom_echo pres press [amd64, i386]
  • usr/bin/dicom_echo tranport transport [amd64, i386]
  • usr/bin/dicom_echo uniqe unique [amd64, i386]
  • usr/bin/ex1_initiator Modifer Modifier [amd64, i386]
  • usr/bin/ex1_initiator ment meant [amd64, i386]
  • usr/bin/ex1_initiator tranport transport [amd64, i386]
  • usr/bin/ex1_initiator uniqe unique [amd64, i386]
  • usr/bin/ex2_initiator Modifer Modifier [amd64, i386]
  • usr/bin/ex2_initiator ment meant [amd64, i386]
  • usr/bin/ex2_initiator tranport transport [amd64, i386]
  • usr/bin/ex2_initiator uniqe unique [amd64, i386]
  • usr/bin/ex3_acceptor Modifer Modifier [amd64, i386]
  • usr/bin/ex3_acceptor ment meant [amd64, i386]
  • usr/bin/ex3_acceptor tranport transport [amd64, i386]
  • usr/bin/ex3_acceptor uniqe unique [amd64, i386]
  • usr/bin/ex3_initiator Modifer Modifier [amd64, i386]
  • usr/bin/ex3_initiator ment meant [amd64, i386]
  • usr/bin/ex3_initiator tranport transport [amd64, i386]
  • usr/bin/ex3_initiator uniqe unique [amd64, i386]
  • usr/bin/ex4_acceptor Modifer Modifier [amd64, i386]
  • usr/bin/ex4_acceptor ment meant [amd64, i386]
  • usr/bin/ex4_acceptor tranport transport [amd64, i386]
  • usr/bin/ex4_acceptor uniqe unique [amd64, i386]
  • usr/bin/ex4_initiator Modifer Modifier [amd64, i386]
  • usr/bin/ex4_initiator ment meant [amd64, i386]
  • usr/bin/ex4_initiator tranport transport [amd64, i386]
  • usr/bin/ex4_initiator uniqe unique [amd64, i386]
  • usr/bin/fillImageDB Modifer Modifier [amd64, i386]
  • usr/bin/fillImageDB ment meant [amd64, i386]
  • usr/bin/fillRSA uniqe unique [amd64, i386]
  • usr/bin/fis_server Modifer Modifier [amd64, i386]
  • usr/bin/fis_server Unexepected Unexpected [amd64, i386]
  • usr/bin/fis_server ment meant [amd64, i386]
  • usr/bin/fis_server tranport transport [amd64, i386]
  • usr/bin/fis_server uniqe unique [amd64, i386]
  • usr/bin/icon_append_file Modifer Modifier [amd64, i386]
  • usr/bin/icon_append_file ment meant [amd64, i386]
  • usr/bin/icon_append_index Modifer Modifier [amd64, i386]
  • usr/bin/icon_append_index ment meant [amd64, i386]
  • usr/bin/image_server Modifer Modifier [amd64, i386]
  • usr/bin/image_server Unexepected Unexpected [amd64, i386]
  • usr/bin/image_server ment meant [amd64, i386]
  • usr/bin/image_server tranport transport [amd64, i386]
  • usr/bin/image_server uniqe unique [amd64, i386]
  • usr/bin/mwlQuery Modifer Modifier [amd64, i386]
  • usr/bin/mwlQuery Unexepected Unexpected [amd64, i386]
  • usr/bin/mwlQuery ment meant [amd64, i386]
  • usr/bin/mwlQuery tranport transport [amd64, i386]
  • usr/bin/mwlQuery uniqe unique [amd64, i386]
  • usr/bin/print_client Modifer Modifier [amd64, i386]
  • usr/bin/print_client Sofware Software [amd64, i386]
  • usr/bin/print_client Unexepected Unexpected [amd64, i386]
  • usr/bin/print_client ment meant [amd64, i386]
  • usr/bin/print_client pres press [amd64, i386]
  • usr/bin/print_client tranport transport [amd64, i386]
  • usr/bin/print_client uniqe unique [amd64, i386]
  • usr/bin/print_mgr Modifer Modifier [amd64, i386]
  • usr/bin/print_mgr Sofware Software [amd64, i386]
  • usr/bin/print_mgr Unexepected Unexpected [amd64, i386]
  • usr/bin/print_mgr ment meant [amd64, i386]
  • usr/bin/print_mgr pres press [amd64, i386]
  • usr/bin/print_mgr tranport transport [amd64, i386]
  • usr/bin/print_mgr uniqe unique [amd64, i386]
  • usr/bin/print_server Modifer Modifier [amd64, i386]
  • usr/bin/print_server Sofware Software [amd64, i386]
  • usr/bin/print_server Unexepected Unexpected [amd64, i386]
  • usr/bin/print_server ment meant [amd64, i386]
  • usr/bin/print_server tranport transport [amd64, i386]
  • usr/bin/print_server uniqe unique [amd64, i386]
  • usr/bin/print_server_display Modifer Modifier [amd64, i386]
  • usr/bin/print_server_display Sofware Software [amd64, i386]
  • usr/bin/print_server_display ment meant [amd64, i386]
  • usr/bin/print_server_display successfull successful [amd64, i386]
  • usr/bin/ris_gateway Modifer Modifier [amd64, i386]
  • usr/bin/ris_gateway Unexepected Unexpected [amd64, i386]
  • usr/bin/ris_gateway ment meant [amd64, i386]
  • usr/bin/ris_gateway tranport transport [amd64, i386]
  • usr/bin/ris_gateway uniqe unique [amd64, i386]
  • usr/bin/send_image Modifer Modifier [amd64, i386]
  • usr/bin/send_image Unexepected Unexpected [amd64, i386]
  • usr/bin/send_image ment meant [amd64, i386]
  • usr/bin/send_image sensitve sensitive [amd64, i386]
  • usr/bin/send_image tranport transport [amd64, i386]
  • usr/bin/send_image uniqe unique [amd64, i386]
  • usr/bin/send_results Modifer Modifier [amd64, i386]
  • usr/bin/send_results Unexepected Unexpected [amd64, i386]
  • usr/bin/send_results ment meant [amd64, i386]
  • usr/bin/send_results tranport transport [amd64, i386]
  • usr/bin/send_results uniqe unique [amd64, i386]
  • usr/bin/send_study Modifer Modifier [amd64, i386]
  • usr/bin/send_study Unexepected Unexpected [amd64, i386]
  • usr/bin/send_study ment meant [amd64, i386]
  • usr/bin/send_study tranport transport [amd64, i386]
  • usr/bin/send_study uniqe unique [amd64, i386]
  • usr/bin/simple_pacs Modifer Modifier [amd64, i386]
  • usr/bin/simple_pacs Unexepected Unexpected [amd64, i386]
  • usr/bin/simple_pacs ment meant [amd64, i386]
  • usr/bin/simple_pacs tranport transport [amd64, i386]
  • usr/bin/simple_pacs uniqe unique [amd64, i386]
  • usr/bin/simple_storage Modifer Modifier [amd64, i386]
  • usr/bin/simple_storage Unexepected Unexpected [amd64, i386]
  • usr/bin/simple_storage ment meant [amd64, i386]
  • usr/bin/simple_storage tranport transport [amd64, i386]
  • usr/bin/simple_storage uniqe unique [amd64, i386]
  • usr/bin/storage_classes tranport transport [amd64, i386]
  • usr/bin/storage_classes uniqe unique [amd64, i386]
  • usr/bin/storage_commit Modifer Modifier [amd64, i386]
  • usr/bin/storage_commit Unexepected Unexpected [amd64, i386]
  • usr/bin/storage_commit ment meant [amd64, i386]
  • usr/bin/storage_commit tranport transport [amd64, i386]
  • usr/bin/storage_commit uniqe unique [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://ctsim.org/download.html
• P file-contains-trailing-whitespace
  • debian/changelog (line 656)
• P rules-requires-root-missing
• X upstream-metadata-file-is-missing

ctsim

• X binary-file-built-without-LFS-support
  • usr/bin/ctsim
  • usr/bin/ctsimtext
• I spelling-error-in-binary
  • usr/bin/ctsim Modifer Modifier
  • usr/bin/ctsim ment meant
  • usr/bin/ctsimtext Modifer Modifier
  • usr/bin/ctsimtext ment meant

ctsim-doc

• W privacy-breach-generic
  • usr/share/doc/ctsim/examples/simulate.html [<link rel="stylesheet" href="http://www.ctsim.org/main.css" type="text/css">] (http://www.ctsim.org/main.css)

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

cufflinks

• X binary-file-built-without-LFS-support
  • usr/bin/compress_gtf
  • usr/bin/cuffcompare
  • usr/bin/cuffdiff
  • usr/bin/cufflinks
  • usr/bin/cuffnorm
  • usr/bin/cuffquant
  • usr/bin/gtf_to_sam
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• P script-uses-unversioned-python-in-shebang
  • usr/bin/cuffmerge
• I spelling-error-in-binary
  • usr/bin/compress_gtf unavaialable unavailable
  • usr/bin/cuffdiff constrasts contrasts
  • usr/bin/cuffdiff unavaialable unavailable
  • usr/bin/cufflinks unavaialable unavailable
  • usr/bin/cuffnorm unavaialable unavailable
  • usr/bin/cuffquant unavaialable unavailable
  • usr/bin/gtf_to_sam unavaialable unavailable
• I spelling-error-in-manpage
  • usr/share/man/man1/cuffdiff.1.gz constrasts contrasts

• X debian-watch-does-not-check-gpg-signature
• P insane-line-length-in-source-file
  • JSZip/jszip.js line length is 769 characters (>512)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-browserified-javascript
  • JSZip/jszip.js code fragment:if("object"==typeof exports&&"undefined"!=typeof module)module.exports=e();else if("fu
• P source-contains-prebuilt-javascript-object
  • AutoFill/js/autoFill.bootstrap.min.js
  • AutoFill/js/autoFill.foundation.min.js
  • AutoFill/js/autoFill.jqueryui.min.js
  • AutoFill/js/dataTables.autoFill.min.js
  • Buttons/js/buttons.bootstrap.min.js
  • Buttons/js/buttons.colVis.min.js
  • Buttons/js/buttons.foundation.min.js
  • Buttons/js/buttons.html5.min.js
  • Buttons/js/buttons.jqueryui.min.js
  • Buttons/js/buttons.print.min.js
  • Buttons/js/dataTables.buttons.min.js
  • ColReorder/js/dataTables.colReorder.min.js
  • FixedColumns/js/dataTables.fixedColumns.min.js
  • FixedHeader/js/dataTables.fixedHeader.min.js
  • JSZip/jszip.js line length is 769 characters (>512)
  • JSZip/jszip.min.js
  • KeyTable/js/dataTables.keyTable.min.js
  • Responsive/js/dataTables.responsive.min.js
  • RowReorder/js/dataTables.rowReorder.min.js
  • Scroller/js/dataTables.scroller.min.js
  • Select/js/dataTables.select.min.js
  • pdfmake/build/pdfmake.min.js
• O source-is-missing
  • JSZip/jszip.js line length is 769 characters (>512)
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

dazzdb

• X binary-file-built-without-LFS-support
  • usr/bin/Catrack
  • usr/bin/DAM2fasta
  • usr/bin/DB2arrow
  • usr/bin/DB2fasta
  • usr/bin/DB2quiva
  • usr/bin/DBa2b
  • usr/bin/DBb2a
  • usr/bin/DBdump
  • usr/bin/DBdust
  • usr/bin/DBmv
  • usr/bin/DBrm
  • usr/bin/DBshow
  • usr/bin/DBsplit
  • usr/bin/DBstats
  • usr/bin/DBtrim
  • usr/bin/DBwipe
  • usr/bin/arrow2DB
  • usr/bin/dsimulator
  • usr/bin/fasta2DAM
  • usr/bin/fasta2DB
  • usr/bin/quiva2DB
• I hardening-no-bindnow
  • usr/bin/DBa2b
  • usr/bin/DBb2a
• I hardening-no-fortify-functions
  • usr/bin/DBa2b
  • usr/bin/DBb2a
• I spelling-error-in-binary
  • usr/bin/Catrack occurences occurrences
  • usr/bin/Catrack previos previous
  • usr/bin/DAM2fasta occurences occurrences
  • usr/bin/DAM2fasta previos previous
  • usr/bin/DB2arrow occurences occurrences
  • usr/bin/DB2arrow previos previous
  • usr/bin/DB2fasta occurences occurrences
  • usr/bin/DB2fasta previos previous
  • usr/bin/DB2quiva occurences occurrences
  • usr/bin/DB2quiva previos previous
  • usr/bin/DBa2b occurences occurrences
  • usr/bin/DBa2b previos previous
  • usr/bin/DBb2a occurences occurrences
  • usr/bin/DBb2a previos previous
  • usr/bin/DBdump occurences occurrences
  • usr/bin/DBdump previos previous
  • usr/bin/DBdust occurences occurrences
  • usr/bin/DBdust previos previous
  • usr/bin/DBmv occurences occurrences
  • usr/bin/DBmv previos previous
  • usr/bin/DBrm occurences occurrences
  • usr/bin/DBrm previos previous
  • usr/bin/DBshow occurences occurrences
  • usr/bin/DBshow previos previous
  • usr/bin/DBsplit occurences occurrences
  • usr/bin/DBsplit previos previous
  • usr/bin/DBstats occurences occurrences
  • usr/bin/DBstats previos previous
  • usr/bin/DBtrim occurences occurrences
  • usr/bin/DBtrim previos previous
  • usr/bin/DBwipe occurences occurrences
  • usr/bin/DBwipe previos previous
  • usr/bin/arrow2DB occurences occurrences
  • usr/bin/arrow2DB previos previous
  • usr/bin/dsimulator occurences occurrences
  • usr/bin/dsimulator previos previous
  • usr/bin/fasta2DAM occurences occurrences
  • usr/bin/fasta2DAM previos previous
  • usr/bin/fasta2DB occurences occurrences
  • usr/bin/fasta2DB previos previous
  • usr/bin/quiva2DB Coul Could
  • usr/bin/quiva2DB occurences occurrences
  • usr/bin/quiva2DB previos previous

• I debian-rules-contains-unnecessary-get-orig-source-target
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://dicom.offis.de/pub/dicom/offis/software/dcmtk/current/dcmtk-(.*)\.tar\.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 29)
  • debian/changelog (line 30)
  • debian/changelog (line 31)
  • debian/changelog (line 700)
  • debian/rules (line 10)
  • debian/rules (line 67)
  • debian/rules (line 68)
  • debian/rules (line 78)
• X non-consecutive-debian-revision
  • 3.6.4-2 -> 3.6.4-2.1
• I out-of-date-standards-version
  • 4.1.5 (released 2018-07-04) (current is 4.4.1)
• P package-uses-old-debhelper-compat-version
  • 9
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing
• I wildcard-matches-nothing-in-dep5-copyright
  • dcmsr/include/dcmtk/dcmsr/cmr/dsrdnflt.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/dsritcsr.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/dsritcsr.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/dsrprdcc.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/tid1409m.h (paragraph at line 399)
  • dcmsr/libcmr/dsrdnflt.cc (paragraph at line 399)
  • dcmsr/libcmr/dsritcsr.cc (paragraph at line 399)
  • dcmsr/libcmr/dsritcsr.cc (paragraph at line 399)
  • dcmsr/libcmr/dsrprdcc.cc (paragraph at line 399)
  • dcmsr/libcmr/tid1409m.cc (paragraph at line 399)
  • dcmsr/libcmr/tid300cc.cc (paragraph at line 399)

dcmtk

• X binary-file-built-without-LFS-support
  • usr/bin/dcm2pdf
  • usr/bin/dcm2pnm
  • usr/bin/dcmftest
  • usr/bin/dcmj2pnm
  • usr/bin/dcml2pnm
  • usr/bin/dcmmklut
  • usr/bin/dcmp2pgm
  • usr/bin/dcmprscp
  • usr/bin/dcmprscu
  • usr/bin/dcmpsprt
  • usr/bin/dcmpsrcv
  • usr/bin/dcmpssnd
  • usr/bin/dcmsign
  • usr/bin/dump2dcm
  • usr/bin/storescp
  • usr/bin/xml2dcm
• I hardening-no-fortify-functions
  • usr/bin/dcmftest [amd64, i386]
  • usr/bin/dump2dcm [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/dcmcjpls threshhold threshold [amd64, i386]
  • usr/bin/dcmodify occurences occurrences [amd64, i386]
  • usr/bin/dcmprscu occured occurred [amd64, i386]
  • usr/bin/dcmpsmk additonal additional [amd64, i386]
  • usr/bin/dcmpsprt pres press [amd64, i386]
  • usr/bin/storescu pres press [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/dcmcjpeg.1.gz truely truly [amd64, i386]
  • usr/share/man/man1/dcmcjpls.1.gz threshhold threshold [amd64, i386]
  • usr/share/man/man1/dcmcjpls.1.gz threshhold threshold [amd64, i386]
  • usr/share/man/man1/dcmcjpls.1.gz threshhold threshold [amd64, i386]
  • usr/share/man/man1/dcmp2pgm.1.gz "allows to" "allows one to" [amd64, i386]
  • usr/share/man/man1/dcmprscp.1.gz "allows to" "allows one to" [amd64, i386]
  • usr/share/man/man1/dcmpsmk.1.gz "allow to" "allow one to" [amd64, i386]

dcmtk-doc

• X duplicate-files
  • usr/share/doc/dcmtk-doc/html/search/all_1b.js usr/share/doc/dcmtk-doc/html/search/functions_1a.js

libdcmtk14

• X binary-file-built-without-LFS-support
  • usr/lib/i386-linux-gnu/libdcmdata.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmimgle.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmnet.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmpstat.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmqrdb.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmwlm.so.14.3.6.4
  • usr/lib/i386-linux-gnu/liboflog.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libofstd.so.14.3.6.4
• O embedded-library
  • usr/lib/i386-linux-gnu/libijg12.so.14.3.6.4: libjpeg
  • usr/lib/i386-linux-gnu/libijg16.so.14.3.6.4: libjpeg
  • usr/lib/i386-linux-gnu/libijg8.so.14.3.6.4: libjpeg
  • usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4: libjpeg
  • usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4: libjpeg
  • usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4: libjpeg
• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmtls.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4
• O no-symbols-control-file
  • usr/lib/i386-linux-gnu/libcharls.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libcmr.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmdata.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmfg.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmimage.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmimgle.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmiod.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmjpeg.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmjpls.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmnet.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmpmap.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmpstat.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmqrdb.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmrt.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmseg.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmsr.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmtls.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmtract.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmwlm.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libi2d.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/i386-linux-gnu/liboflog.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libofstd.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libcharls.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4
• O package-name-doesnt-match-sonames
  • libcharls14 libcmr14 libdcmdata14 libdcmdsig14 libdcmfg14 libdcmimage14 libdcmimgle14 libdcmiod14 libdcmjpeg14 libdcmjpls14 libdcmnet14 libdcmpmap14 libdcmpstat14 libdcmqrdb14 libdcmrt14 libdcmseg14 libdcmsr14 libdcmtls14 libdcmtract14 libdcmwlm14 libi2d14 libijg12-14 libijg16-14 libijg8-14 liboflog14 libofstd14
• X shlib-calls-exit
  • usr/lib/i386-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libofstd.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4
• I spelling-error-in-binary
  • usr/lib/i386-linux-gnu/libdcmnet.so.14.3.6.4 pres press
  • usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 AfE Safe
  • usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 pres press

• P file-contains-trailing-whitespace
  • debian/changelog (line 1197)
  • debian/changelog (line 1198)
  • debian/changelog (line 1336)
  • debian/changelog (line 1337)
  • debian/changelog (line 16)
  • debian/changelog (line 17)
  • debian/changelog (line 269)
  • debian/changelog (line 270)
  • debian/changelog (line 290)
  • debian/changelog (line 291)
  • debian/changelog (line 518)
  • debian/changelog (line 519)
  • debian/changelog (line 622)
  • debian/changelog (line 633)
  • debian/changelog (line 635)
  • debian/changelog (line 636)
  • debian/changelog (line 894)
  • debian/changelog (line 895)
  • debian/control (line 2714)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.3.0 (released 2018-12-23) (current is 4.4.0)
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

science-config

• P maintainer-script-without-set-e
  • config
  • postinst
• I unused-debconf-template
  • shared/science-config/usermenus

• P file-contains-trailing-whitespace
  • debian/control (line 224)
  • debian/control (line 257)
• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem
• P no-dep5-copyright
• P package-lacks-versioned-build-depends-on-debhelper
  • 9
• P package-uses-old-debhelper-compat-version
  • 9
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

debichem-analytical-biochemistry

• E description-is-pkg-name
  • DebiChem Analytical BioChemistry
• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem
• O using-first-person-in-description
  • line 6: mine

debichem-cheminformatics

• E description-is-pkg-name
  • DebiChem Cheminformatics
• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-crystallography

• E description-is-pkg-name
  • DebiChem crystallography
• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-development

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-input-generation-output-processing

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-molecular-abinitio

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-molecular-dynamics

• E description-is-pkg-name
  • DebiChem Molecular Dynamics
• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-molecular-modelling

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-periodic-abinitio

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-semiempirical

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-tasks

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-view-edit-2d

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-visualisation

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

dh-r

• W binary-without-manpage
  • usr/bin/dh_vignette
  • usr/bin/prepare_missing_cran_package
• W script-not-executable
  • usr/share/dh-r/r-cran.mk

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://dialign.gobics.de/download/dialign-(.*)-linux\.i586\.tar\.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 148)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

dialign

• X binary-file-built-without-LFS-support
  • usr/bin/dialign2-2 [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/LGPL [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/dialign2-2.1.gz intrest interest [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://dialign-tx.gobics.de/download
• X maybe-not-arch-all-binnmuable
  • dialign-tx -> dialign-tx-data
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • bin/

dialign-tx

• X binary-file-built-without-LFS-support
  • usr/bin/dialign-tx [amd64, i386]
• W spelling-error-in-readme-debian
  • acces access [amd64, i386]

• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 10)
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.dclunie.com/dicom3tools/workinprogress/
• P file-contains-trailing-whitespace
  • debian/changelog (line 9)
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.4.0)
• P package-uses-old-debhelper-compat-version
  • 9
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

dicom3tools

• I hardening-no-bindnow
  • usr/bin/andump
  • usr/bin/dcdirdmp
  • usr/bin/dcdump
  • usr/bin/dcentvfy
  • usr/bin/dcfile
  • usr/bin/dchist
  • usr/bin/dciodvfy
  • usr/bin/dckey
  • usr/bin/dcposn
  • usr/bin/dcsort
  • usr/bin/dcsrdump
  • usr/bin/dcstats
  • usr/bin/dctable
  • usr/bin/dctopgm8
  • usr/bin/dctopgx
  • usr/bin/dctopnm
  • usr/bin/jpegdump
• I hardening-no-fortify-functions
  • usr/bin/andump
  • usr/bin/dcdirdmp
  • usr/bin/dcdump
  • usr/bin/dcentvfy
  • usr/bin/dcfile
  • usr/bin/dchist
  • usr/bin/dciodvfy
  • usr/bin/dckey
  • usr/bin/dcposn
  • usr/bin/dcsort
  • usr/bin/dcsrdump
  • usr/bin/dcstats
  • usr/bin/dctable
  • usr/bin/dctopgm8
  • usr/bin/dctopgx
  • usr/bin/dctopnm
• I spelling-error-in-binary
  • usr/bin/andump Dependant Dependent
  • usr/bin/andump Unkown Unknown
  • usr/bin/dcdirdmp Dependant Dependent
  • usr/bin/dcdirdmp Unkown Unknown
  • usr/bin/dcdirdmp convertor converter
  • usr/bin/dcdump Dependant Dependent
  • usr/bin/dcdump Unkown Unknown
  • usr/bin/dcdump convertor converter
  • usr/bin/dcentvfy AMMENDMENT AMENDMENT
  • usr/bin/dcentvfy Dependant Dependent
  • usr/bin/dcentvfy Unkown Unknown
  • usr/bin/dcentvfy convertor converter
  • usr/bin/dcfile Dependant Dependent
  • usr/bin/dcfile Unkown Unknown
  • usr/bin/dchist Dependant Dependent
  • usr/bin/dchist Unkown Unknown
  • usr/bin/dchist convertor converter
  • usr/bin/dciodvfy AMMENDMENT AMENDMENT
  • usr/bin/dciodvfy Dependant Dependent
  • usr/bin/dciodvfy Unkown Unknown
  • usr/bin/dciodvfy convertor converter
  • usr/bin/dckey Dependant Dependent
  • usr/bin/dckey Unkown Unknown
  • usr/bin/dckey convertor converter
  • usr/bin/dcposn Dependant Dependent
  • usr/bin/dcposn Unkown Unknown
  • usr/bin/dcposn convertor converter
  • usr/bin/dcsort Dependant Dependent
  • usr/bin/dcsort Unkown Unknown
  • usr/bin/dcsort convertor converter
  • usr/bin/dcsrdump Dependant Dependent
  • usr/bin/dcsrdump Unkown Unknown
  • usr/bin/dcsrdump convertor converter
  • usr/bin/dcstats Dependant Dependent
  • usr/bin/dcstats Unkown Unknown
  • usr/bin/dcstats convertor converter
  • usr/bin/dctable Dependant Dependent
  • usr/bin/dctable Unkown Unknown
  • usr/bin/dctable convertor converter
  • usr/bin/dctopgm8 Dependant Dependent
  • usr/bin/dctopgm8 Unkown Unknown
  • usr/bin/dctopgm8 convertor converter
  • usr/bin/dctopgx Dependant Dependent
  • usr/bin/dctopgx Unkown Unknown
  • usr/bin/dctopgx convertor converter
  • usr/bin/dctopnm Dependant Dependent
  • usr/bin/dctopnm Unkown Unknown
  • usr/bin/dctopnm convertor converter
• I spelling-error-in-manpage
  • usr/share/man/man1/dcsrdump.1.gz Preceed Precede
  • usr/share/man/man1/dctopgm8.1.gz supresses suppresses
  • usr/share/man/man1/dctopgm8.1.gz supresses suppresses

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

dicompyler

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/dicompyler.desktop
• O extra-license-file
  • usr/share/dicompyler/dicompyler/license.txt
• O package-contains-documentation-outside-usr-share-doc
  • usr/share/dicompyler/dicompyler/license.txt

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://dicom.offis.de/pub/dicom/offis/software/dscope/dscope([\d]+)/dsgui(\d)(\d)(\d)\.zip
• P file-contains-trailing-whitespace
  • debian/changelog (line 8)
  • debian/rules (line 5)
  • debian/rules (line 65)
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.4.0)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

dicomscope

• W bad-jar-name
  • usr/share/java/DICOMscope-3.6.0.jar

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 7)
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 1.01-wu1-3+dfsg
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • samtools/
• I testsuite-autopkgtest-missing

dindel (1.01-wu1-3+dfsg-1+b1; main)

• I spelling-error-in-binary
  • usr/bin/dindel auxilary auxiliary [amd64, i386]
  • usr/bin/dindel libary library [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/dindel.1.gz auxilary auxiliary [amd64, i386]
  • usr/share/man/man1/dindel.1.gz auxilary auxiliary [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 88)
• P rules-requires-root-missing
• P source-contains-empty-directory
  • thirdparty/gatb-core/

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://rostlab.org/disulfinder/disulfinder-([0-9.]+)\.tar\.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 37)
  • debian/changelog (line 38)
  • debian/changelog (line 40)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-empty-directory
  • disulfind/Fasta/
  • disulfind/Logs/
  • disulfind/Predictions/All/
  • disulfind/Predictions/Answers/
  • disulfind/Predictions/Bondstate/BRNN/
  • disulfind/Predictions/Bondstate/Viterbi/
  • disulfind/Predictions/Connectivity/
  • disulfind/Predictions/LogStats/
  • disulfind/Predictions/Outputs/
  • disulfind/Predictions/Pssm/
  • disulfind/Predictions/Queries/
  • disulfind/bin/
  • disulfind/src/tmp/
  • disulfind/tmp/

disulfinder

• X binary-file-built-without-LFS-support
  • usr/bin/disulfinder [amd64, i386]
• I package-contains-empty-directory
  • usr/share/disulfinder/ [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing

dnaclust

• W binary-without-manpage
  • usr/bin/dnaclust-abun [amd64, i386]
  • usr/bin/dnaclust-ref [amd64, i386]
  • usr/bin/find-large-clusters [amd64, i386]
  • usr/bin/generate_test_clusters [amd64, i386]
  • usr/bin/star-align [amd64, i386]
• W executable-not-elf-or-script
  • usr/share/doc/dnaclust/examples/ebola.fasta [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/dnaclust [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/dnaclust/fastaselect seperate separate [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-([0-9.]+)\.t[bgx]z
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

dssp (3.0.0-3+b1; main)

• I hardening-no-bindnow
  • usr/bin/mkdssp [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/mkdssp [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

e-mem

• I hardening-no-fortify-functions
  • usr/bin/e-mem [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

ea-utils

• X binary-file-built-without-LFS-support
  • usr/bin/fastq-clipper [amd64, i386]
  • usr/bin/fastq-mcf [amd64, i386]
  • usr/bin/fastq-stats [amd64, i386]
  • usr/bin/sam-stats [amd64, i386]
  • usr/bin/varcall [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/fastq-clipper [amd64, i386]
  • usr/bin/fastq-join [amd64, i386]
  • usr/bin/fastq-mcf [amd64, i386]
  • usr/bin/fastq-multx [amd64, i386]
  • usr/bin/fastq-stats [amd64, i386]
  • usr/bin/varcall [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/fastq-mcf occurance occurrence [amd64, i386]
  • usr/bin/fastq-multx occuring occurring [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/fastq-mcf.1.gz occurance occurrence [amd64, i386]
  • usr/share/man/man1/fastq-multx.1.gz occuring occurring [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

ecopcr

• X binary-file-built-without-LFS-support
  • usr/bin/ecoPCR [amd64, i386]
  • usr/bin/ecofind [amd64, i386]
  • usr/bin/ecogrep [amd64, i386]
  • usr/bin/ecoisundertaxon [amd64, i386]
• W binary-without-manpage
  • usr/bin/ecoPCRFilter [amd64, i386]
  • usr/bin/ecoSort [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/ecoPCR [amd64, i386]
  • usr/bin/ecofind [amd64, i386]
  • usr/bin/ecogrep [amd64, i386]
  • usr/bin/ecoisundertaxon [amd64, i386]
• I spelling-error-in-copyright
  • therefor therefore [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I tar-errors-from-source
  • Ignoring unknown extended header keyword 'SCHILY.fflags'
  • Ignoring unknown extended header keyword 'SCHILY.fflags'
  • Ignoring unknown extended header keyword 'SCHILY.fflags'
  • Ignoring unknown extended header keyword 'SCHILY.fflags'
  • Ignoring unknown extended header keyword 'SCHILY.fflags'
  • Ignoring unknown extended header keyword 'SCHILY.fflags'
  • Ignoring unknown extended header keyword 'SCHILY.fflags'
  • Ignoring unknown extended header keyword 'SCHILY.fflags'
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libedf1

• I symbols-file-missing-build-depends-package-field

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 10)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

edtsurf

• X binary-file-built-without-LFS-support
  • usr/bin/EDTSurf

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 16)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

eigensoft

• X binary-file-built-without-LFS-support
  • usr/bin/baseprog [amd64, i386]
  • usr/bin/convertf [amd64, i386]
  • usr/bin/eigenstrat [amd64, i386]
  • usr/bin/eigenstratQTL [amd64, i386]
  • usr/bin/mergeit [amd64, i386]
  • usr/bin/pca [amd64, i386]
  • usr/bin/pcatoy [amd64, i386]
  • usr/bin/smartrel [amd64, i386]
  • usr/bin/smshrink [amd64, i386]
  • usr/bin/twstats [amd64, i386]
  • usr/lib/eigensoft/smarteigenstrat [amd64, i386]
  • usr/lib/eigensoft/smartpca [amd64, i386]
• W binary-without-manpage
  • usr/bin/baseprog [amd64, i386]
  • usr/bin/convertf [amd64, i386]
  • usr/bin/eigenstrat [amd64, i386]
  • usr/bin/eigenstratQTL [amd64, i386]
  • usr/bin/evec2pca [amd64, i386]
  • usr/bin/evec2pca-ped [amd64, i386]
  • usr/bin/gc-eigensoft [amd64, i386]
  • usr/bin/mergeit [amd64, i386]
  • usr/bin/pca [amd64, i386]
  • usr/bin/pcatoy [amd64, i386]
  • usr/bin/smartpca [amd64, i386]
  • usr/bin/smartrel [amd64, i386]
  • usr/bin/smshrink [amd64, i386]
  • usr/bin/twstats [amd64, i386]
• X duplicate-files
  • usr/share/doc/eigensoft/examples/CONVERTF/example.eigenstratgeno usr/share/doc/eigensoft/examples/EIGENSTRAT/example.geno usr/share/doc/eigensoft/examples/POPGEN/example.geno [amd64, i386]
  • usr/share/doc/eigensoft/examples/CONVERTF/example.ind.packedancestrymap usr/share/doc/eigensoft/examples/EIGENSTRAT/example.ind usr/share/doc/eigensoft/examples/POPGEN/example.ind [amd64, i386]
  • usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymap usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymapgeno [amd64, i386]
  • usr/share/doc/eigensoft/examples/CONVERTF/example.pheno usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pheno [amd64, i386]
  • usr/share/doc/eigensoft/examples/CONVERTF/example.snp usr/share/doc/eigensoft/examples/CONVERTF/example.snp.packedancestrymap usr/share/doc/eigensoft/examples/EIGENSTRAT/example.snp usr/share/doc/eigensoft/examples/POPGEN/example.snp [amd64, i386]
  • usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq [amd64, i386]
  • usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq.GC usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq.GC [amd64, i386]
  • usr/share/doc/eigensoft/examples/EIGENSTRAT/example.eval usr/share/doc/eigensoft/examples/POPGEN/example.eval [amd64, i386]
  • usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca usr/share/doc/eigensoft/examples/POPGEN/example.pca [amd64, i386]
  • usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca.evec usr/share/doc/eigensoft/examples/POPGEN/example.evec [amd64, i386]
• P example-unusual-interpreter
  • usr/share/doc/eigensoft/examples/POPGEN/HGDP.X.perl #!/usr/bin [amd64, i386]
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/eigensoft/CONVERTF/README [amd64, i386]
  • usr/share/eigensoft/EIGENSTRAT/README [amd64, i386]
  • usr/share/eigensoft/POPGEN/README [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/smshrink beween between [amd64, i386]
  • usr/lib/eigensoft/smartpca beween between [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-(.*)\.tar\.gz
• X deprecated-configure-filename
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-cvs-control-dir
  • emboss_doc/html/CVS
  • emboss_doc/text/CVS
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

embassy-domainatrix

• O binary-or-shlib-defines-rpath
  • usr/bin/cathparse /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainnr /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainreso /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainseqs /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainsse /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/scopparse /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/ssematch /usr/lib/emboss/lib [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-(.*)\.tar\.gz
• X deprecated-configure-filename
• P file-contains-trailing-whitespace
  • debian/changelog (line 48)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-cvs-control-dir
  • emboss_doc/html/CVS
  • emboss_doc/text/CVS
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

embassy-domalign

• O binary-or-shlib-defines-rpath
  • usr/bin/allversusall /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainalign /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainrep /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/seqalign /usr/lib/emboss/lib [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-(.*).tar.gz
• X deprecated-configure-filename
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-cvs-control-dir
  • emboss_doc/html/CVS
  • emboss_doc/text/CVS
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

embassy-domsearch

• O binary-or-shlib-defines-rpath
  • usr/bin/seqfraggle /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/seqnr /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/seqsearch /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/seqsort /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/seqwords /usr/lib/emboss/lib [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-(.*).tar.gz
• X deprecated-configure-filename
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-cvs-control-dir
  • emboss_doc/html/CVS
  • emboss_doc/text/CVS
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing
• I wildcard-matches-nothing-in-dep5-copyright
  • emboss-doc/* (paragraph at line 22)

embassy-phylip

• O binary-or-shlib-defines-rpath
  • usr/bin/fclique /usr/lib/emboss/lib
  • usr/bin/fconsense /usr/lib/emboss/lib
  • usr/bin/fcontml /usr/lib/emboss/lib
  • usr/bin/fcontrast /usr/lib/emboss/lib
  • usr/bin/fdiscboot /usr/lib/emboss/lib
  • usr/bin/fdnacomp /usr/lib/emboss/lib
  • usr/bin/fdnadist /usr/lib/emboss/lib
  • usr/bin/fdnainvar /usr/lib/emboss/lib
  • usr/bin/fdnaml /usr/lib/emboss/lib
  • usr/bin/fdnamlk /usr/lib/emboss/lib
  • usr/bin/fdnamove /usr/lib/emboss/lib
  • usr/bin/fdnapars /usr/lib/emboss/lib
  • usr/bin/fdnapenny /usr/lib/emboss/lib
  • usr/bin/fdollop /usr/lib/emboss/lib
  • usr/bin/fdolmove /usr/lib/emboss/lib
  • usr/bin/fdolpenny /usr/lib/emboss/lib
  • usr/bin/fdrawgram /usr/lib/emboss/lib
  • usr/bin/fdrawtree /usr/lib/emboss/lib
  • usr/bin/ffactor /usr/lib/emboss/lib
  • usr/bin/ffitch /usr/lib/emboss/lib
  • usr/bin/ffreqboot /usr/lib/emboss/lib
  • usr/bin/fgendist /usr/lib/emboss/lib
  • usr/bin/fkitsch /usr/lib/emboss/lib
  • usr/bin/fmix /usr/lib/emboss/lib
  • usr/bin/fmove /usr/lib/emboss/lib
  • usr/bin/fneighbor /usr/lib/emboss/lib
  • usr/bin/fpars /usr/lib/emboss/lib
  • usr/bin/fpenny /usr/lib/emboss/lib
  • usr/bin/fproml /usr/lib/emboss/lib
  • usr/bin/fpromlk /usr/lib/emboss/lib
  • usr/bin/fprotdist /usr/lib/emboss/lib
  • usr/bin/fprotpars /usr/lib/emboss/lib
  • usr/bin/frestboot /usr/lib/emboss/lib
  • usr/bin/frestdist /usr/lib/emboss/lib
  • usr/bin/frestml /usr/lib/emboss/lib
  • usr/bin/fretree /usr/lib/emboss/lib
  • usr/bin/fseqboot /usr/lib/emboss/lib
  • usr/bin/fseqbootall /usr/lib/emboss/lib
  • usr/bin/ftreedist /usr/lib/emboss/lib
  • usr/bin/ftreedistpair /usr/lib/emboss/lib
• I hardening-no-bindnow
  • usr/bin/fclique
  • usr/bin/fconsense
  • usr/bin/fcontml
  • usr/bin/fcontrast
  • usr/bin/fdiscboot
  • usr/bin/fdnacomp
  • usr/bin/fdnadist
  • usr/bin/fdnainvar
  • usr/bin/fdnaml
  • usr/bin/fdnamlk
  • usr/bin/fdnamove
  • usr/bin/fdnapars
  • usr/bin/fdnapenny
  • usr/bin/fdollop
  • usr/bin/fdolmove
  • usr/bin/fdolpenny
  • usr/bin/fdrawgram
  • usr/bin/fdrawtree
  • usr/bin/ffactor
  • usr/bin/ffitch
  • usr/bin/ffreqboot
  • usr/bin/fgendist
  • usr/bin/fkitsch
  • usr/bin/fmix
  • usr/bin/fmove
  • usr/bin/fneighbor
  • usr/bin/fpars
  • usr/bin/fpenny
  • usr/bin/fproml
  • usr/bin/fpromlk
  • usr/bin/fprotdist
  • usr/bin/fprotpars
  • usr/bin/frestboot
  • usr/bin/frestdist
  • usr/bin/frestml
  • usr/bin/fretree
  • usr/bin/fseqboot
  • usr/bin/fseqbootall
  • usr/bin/ftreedist
  • usr/bin/ftreedistpair
• I spelling-error-in-manpage
  • usr/share/man/man1/fdnamove.1e.gz Arbitary Arbitrary
  • usr/share/man/man1/fdolmove.1e.gz Arbitary Arbitrary
  • usr/share/man/man1/fmove.1e.gz Arbitary Arbitrary
  • usr/share/man/man1/fretree.1e.gz Arbitary Arbitrary
• I unused-override
  • copyright-should-refer-to-common-license-file-for-gpl

• W debian-rules-should-not-use-custom-compression-settings
  • dh_builddeb -- -Z xz (line 129)
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-([\d.]*)\.tar\.gz
• X deprecated-configure-filename
• P file-contains-trailing-whitespace
  • debian/changelog (line 302)
  • debian/changelog (line 382)
  • debian/changelog (line 603)
  • debian/changelog (line 641)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P license-problem-gfdl-non-official-text
  • debian/copyright invariant part is: with no invariant sections, with no front-cover texts, and with no back-cover texts
• X maybe-not-arch-all-binnmuable
  • emboss -> emboss-data
• I out-of-date-standards-version
  • 4.1.5 (released 2018-07-04) (current is 4.4.1)
• P package-does-not-install-examples
  • jemboss/contrib/jaligner/examples/
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• P source-contains-prebuilt-java-object
  • jemboss/contrib/jaligner/jaligner.jar
  • jemboss/lib/JembossPrintAlignment.jar
  • jemboss/lib/activation.jar
  • jemboss/lib/axis/axis-ant.jar
  • jemboss/lib/axis/axis.jar
  • jemboss/lib/axis/commons-discovery.jar
  • jemboss/lib/axis/commons-logging.jar
  • jemboss/lib/axis/jaxrpc.jar
  • jemboss/lib/axis/log4j-1.2.8.jar
  • jemboss/lib/axis/saaj.jar
  • jemboss/lib/axis/servlet.jar
  • jemboss/lib/axis/wsdl4j.jar
  • jemboss/lib/jakarta-regexp-1.2.jar
  • jemboss/lib/jalviewApplet.jar
  • jemboss/lib/jemboss.jar
  • jemboss/lib/mail.jar
  • jemboss/lib/xerces.jar

emboss (6.6.0+dfsg-7+b1; main)

• X binary-file-built-without-LFS-support
  • usr/lib/emboss/edialign [amd64, i386]
  • usr/lib/emboss/jembossctl [amd64, i386]
• W binary-without-manpage
  • usr/bin/acdgalaxy [amd64, i386]
  • usr/bin/assemblyget [amd64, i386]
  • usr/bin/embossupdate [amd64, i386]
  • usr/bin/featmerge [amd64, i386]
  • usr/bin/infoassembly [amd64, i386]
  • usr/bin/jembossctl [amd64, i386]
  • usr/bin/refseqget [amd64, i386]
  • usr/bin/variationget [amd64, i386]
  • usr/bin/xmlget [amd64, i386]
  • usr/bin/xmltext [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/emboss/distmat [amd64, i386]
  • usr/lib/emboss/emowse [amd64, i386]

emboss-doc

• E doc-base-file-references-missing-file
  • domainatrix:13 /usr/share/doc/emboss-doc/doc/manuals/domainatrix.txt
  • emboss-apps:8 /usr/share/doc/emboss-doc/doc/programs/html/index.html
  • emboss-apps:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • emboss-groups:8 /usr/share/doc/emboss-doc/doc/programs/html/groups.html
  • emboss-groups:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • emboss-qg:11 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.pdf
  • emboss-qg:8 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.ps
• I package-contains-empty-directory
  • usr/share/EMBOSS/doc/

emboss-lib (6.6.0+dfsg-7+b1; main)

• X binary-file-built-without-LFS-support
  • usr/lib/emboss/lib/libajax.so.6.0.5
  • usr/lib/emboss/lib/libeplplot.so.3.2.7
  • usr/lib/emboss/lib/libnucleus.so.6.0.5
• O embedded-library
  • usr/lib/emboss/lib/libepcre.so.7.0.9: pcre3 [amd64, i386]
• W package-has-unnecessary-activation-of-ldconfig-trigger
• X shlib-calls-exit
  • usr/lib/emboss/lib/libajaxdb.so.6.0.5 [amd64, i386]
  • usr/lib/emboss/lib/libeplplot.so.3.2.7 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/emboss/lib/libajax.so.6.0.5 nam name [amd64, i386]
  • usr/lib/emboss/lib/libajaxg.so.6.0.5 xwindows X [amd64, i386]
  • usr/lib/emboss/lib/libensembl.so.6.0.5 differnt different [amd64, i386]
  • usr/lib/emboss/lib/libensembl.so.6.0.5 releationship relationship [amd64, i386]
  • usr/lib/emboss/lib/libensembl.so.6.0.5 whithout without [amd64, i386]

emboss-test

• W csh-considered-harmful
  • usr/share/EMBOSS/test/memtest/purify.csh
  • usr/share/EMBOSS/test/memtest/valgrind.csh
  • usr/share/EMBOSS/test/qa/qatest.csh
• W privacy-breach-generic
  • usr/share/EMBOSS/test/data/memenew/ex1.html [<img src="http://meme.nbcr.net/meme/images/meme.png" alt="meme">] (http://meme.nbcr.net/meme/images/meme.png)

jemboss

• W binary-without-manpage
  • usr/bin/jemboss
  • usr/bin/runJemboss.sh
• W classpath-contains-relative-path
  • usr/share/EMBOSS/jemboss/lib/jemboss.jar: lib/jakarta-regexp-1.2.jar
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/jemboss.desktop
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/EMBOSS/jemboss/README
  • usr/share/EMBOSS/jemboss/lib/README
  • usr/share/EMBOSS/jemboss/readme.html
  • usr/share/EMBOSS/jemboss/resources/readme.html
  • usr/share/EMBOSS/jemboss/utils/README
• O script-with-language-extension
  • usr/bin/runJemboss.sh

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

emmax

• X binary-file-built-without-LFS-support
  • usr/bin/emmax
  • usr/bin/emmax-kin
• I hardening-no-bindnow
  • usr/bin/emmax
  • usr/bin/emmax-kin
• I hardening-no-fortify-functions
  • usr/bin/emmax
  • usr/bin/emmax-kin

• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

entangle

• E doc-base-file-references-wrong-path
  • entangle:10 /usr/share/gtk-doc/html/entangle/*.html
  • entangle:9 /usr/share/gtk-doc/html/entangle/index.html
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libentangle_backend.so.0.0.0
  • usr/lib/i386-linux-gnu/libentangle_frontend.so.0.0.0
  • usr/lib/x86_64-linux-gnu/libentangle_backend.so.0.0.0
  • usr/lib/x86_64-linux-gnu/libentangle_frontend.so.0.0.0
• W non-dev-pkg-with-shlib-symlink
  • usr/lib/i386-linux-gnu/libentangle_backend.so.0.0.0 usr/lib/i386-linux-gnu/libentangle_backend.so
  • usr/lib/i386-linux-gnu/libentangle_frontend.so.0.0.0 usr/lib/i386-linux-gnu/libentangle_frontend.so
  • usr/lib/x86_64-linux-gnu/libentangle_backend.so.0.0.0 usr/lib/x86_64-linux-gnu/libentangle_backend.so
  • usr/lib/x86_64-linux-gnu/libentangle_frontend.so.0.0.0 usr/lib/x86_64-linux-gnu/libentangle_frontend.so
• W package-name-doesnt-match-sonames
  • libentangle-backend0 libentangle-frontend0
• I spelling-error-in-binary
  • usr/lib/i386-linux-gnu/libentangle_backend.so.0.0.0 patern pattern
  • usr/lib/x86_64-linux-gnu/libentangle_backend.so.0.0.0 patern pattern

gir1.2-entangle-0.1

• W gir-missing-typelib-dependency
  • usr/share/gir-1.0/Entangle-0.1.gir gir1.2-entangle-0.1
• W gir-section-not-libdevel
  • usr/share/gir-1.0/Entangle-0.1.gir introspection
• I typelib-not-in-multiarch-directory
  • usr/lib/girepository-1.0/Entangle-0.1.typelib usr/lib/i386-linux-gnu/girepository-1.0
  • usr/lib/girepository-1.0/Entangle-0.1.typelib usr/lib/x86_64-linux-gnu/girepository-1.0

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 231)
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 2.3.12-1
• P rules-requires-root-missing

ncbi-epcr

• X binary-file-built-without-LFS-support
  • usr/bin/e-PCR
  • usr/bin/fahash
  • usr/bin/famap
  • usr/bin/re-PCR

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

epigrass

• X duplicate-files
  • usr/share/doc/epigrass/demos/CustomModel.py usr/share/doc/epigrass/demos/CustomModel_example.py [amd64, i386]
• I package-contains-empty-directory
  • usr/share/applications/ [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

examl

• X binary-file-built-without-LFS-support
  • usr/bin/parse-examl
  • usr/lib/examl/bin/examl
  • usr/lib/examl/bin/examl-AVX
  • usr/lib/examl/bin/examl-OMP
  • usr/lib/examl/bin/examl-OMP-AVX
• I spelling-error-in-binary
  • usr/lib/examl/bin/examl-OMP Whe When
  • usr/lib/examl/bin/examl-OMP-AVX Whe When

• X debian-watch-does-not-check-gpg-signature
• X deprecated-configure-filename
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

exonerate

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/exonerate comparision comparison [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/exonerate-server.1.gz distrubuted distributed [amd64, i386]
  • usr/share/man/man1/exonerate.1.gz alignemnt alignment [amd64, i386]
  • usr/share/man/man1/exonerate.1.gz ammount amount [amd64, i386]
  • usr/share/man/man1/exonerate.1.gz distrubuted distributed [amd64, i386]
  • usr/share/man/man1/exonerate.1.gz transistion transition [amd64, i386]
  • usr/share/man/man1/fastautils.1.gz distrubuted distributed [amd64, i386]
  • usr/share/man/man1/ipcress.1.gz Specifiy Specify [amd64, i386]
  • usr/share/man/man1/ipcress.1.gz distrubuted distributed [amd64, i386]

• P file-contains-trailing-whitespace
  • debian/control (line 126)
• P homepage-field-uses-insecure-uri
  • http://wiki.debian.org/DebianEzGo
• P no-dep5-copyright
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

ezgo-accessories

• P homepage-field-uses-insecure-uri
  • http://wiki.debian.org/DebianEzGo

ezgo-education

• P homepage-field-uses-insecure-uri
  • http://wiki.debian.org/DebianEzGo

ezgo-games

• P homepage-field-uses-insecure-uri
  • http://wiki.debian.org/DebianEzGo

ezgo-imaging

• P homepage-field-uses-insecure-uri
  • http://wiki.debian.org/DebianEzGo

ezgo-multimedia

• P homepage-field-uses-insecure-uri
  • http://wiki.debian.org/DebianEzGo

ezgo-network

• P homepage-field-uses-insecure-uri
  • http://wiki.debian.org/DebianEzGo

ezgo-office

• P homepage-field-uses-insecure-uri
  • http://wiki.debian.org/DebianEzGo

ezgo-tasks

• P homepage-field-uses-insecure-uri
  • http://wiki.debian.org/DebianEzGo

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 22)
• P rules-requires-root-missing
• P source-contains-empty-directory
  • bin/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

f2j

• X binary-file-built-without-LFS-support
  • usr/bin/f2java

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.4.0)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

• X debian-watch-does-not-check-gpg-signature
• P homepage-field-uses-insecure-uri
  • ftp://ftp.bio.indiana.edu/molbio/evolve/fastdnaml/fastDNAml.html
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

fastdnaml

• X binary-file-built-without-LFS-support
  • usr/bin/fastDNAml [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/fastDNAml [amd64, i386]
• P homepage-field-uses-insecure-uri
  • ftp://ftp.bio.indiana.edu/molbio/evolve/fastdnaml/fastDNAml.html [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 186)
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 4.1P-fix100+dfsg
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.4.1)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

fastlink

• X binary-file-built-without-LFS-support
  • usr/bin/ilink [amd64, i386]
  • usr/bin/linkmap [amd64, i386]
  • usr/bin/lodscore [amd64, i386]
  • usr/bin/mlink [amd64, i386]
  • usr/bin/unknown [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/ilink [amd64, i386]
  • usr/bin/linkmap [amd64, i386]
  • usr/bin/lodscore [amd64, i386]
  • usr/bin/mlink [amd64, i386]
  • usr/bin/unknown [amd64, i386]
• I possible-documentation-but-no-doc-base-registration
• W privacy-breach-generic
  • usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/left.gif" width="130" height="45" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/left.gif) [amd64, i386]
  • usr/share/doc/fastlink/fastlink.html [<img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif" width="125" height="1" border="0">] (http://www.ncbi.nlm.nih.gov/corehtml/spacer10.gif) [amd64, i386]
  • usr/share/doc/fastlink/fastlink.html [<link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css">] (http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css) [amd64, i386]

fastlink-doc

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://fastml.tau.ac.il/source.php
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing

fastml

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/gainLoss [amd64, i386]
  • usr/bin/indelCoder [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/fastml characte character [amd64, i386]
  • usr/bin/fastml coul could [amd64, i386]
  • usr/bin/fastml scalled scaled [amd64, i386]
  • usr/bin/fastml whe when [amd64, i386]
  • usr/bin/gainLoss Coul Could [amd64, i386]
  • usr/bin/gainLoss acount account [amd64, i386]
  • usr/bin/gainLoss addtional additional [amd64, i386]
  • usr/bin/gainLoss characte character [amd64, i386]
  • usr/bin/gainLoss improvment improvement [amd64, i386]
  • usr/bin/gainLoss scalled scaled [amd64, i386]
  • usr/bin/gainLoss whe when [amd64, i386]
  • usr/bin/indelCoder Coul Could [amd64, i386]
  • usr/bin/indelCoder characte character [amd64, i386]
  • usr/bin/indelCoder scalled scaled [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/fastml.1.gz Controling Controlling [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.4.1)
• P package-uses-old-debhelper-compat-version
  • 11
• P rules-requires-root-missing

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.microbesonline.org/fasttree/FastTree-(.*)\.c
• P file-contains-trailing-whitespace
  • debian/rules (line 19)
• P rules-requires-root-missing

fasttree

• X binary-file-built-without-LFS-support
  • usr/bin/fasttree
  • usr/bin/fasttreeMP

• P file-contains-trailing-whitespace
  • debian/changelog (line 561)
  • debian/changelog (line 579)
  • debian/changelog (line 596)
  • debian/changelog (line 615)
  • debian/changelog (line 622)
  • debian/changelog (line 646)
  • debian/changelog (line 706)
  • debian/changelog (line 712)
  • debian/changelog (line 721)
• P package-uses-old-debhelper-compat-version
  • 10
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

feh

• X binary-file-built-without-LFS-support
  • usr/bin/feh

• X debian-watch-does-not-check-gpg-signature
• P rules-requires-root-missing
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libfest-reflect-java-doc

• X duplicate-files
  • usr/share/doc/libfest-reflect-java/api/jquery/external/jquery/jquery.js usr/share/doc/libfest-reflect-java/api/jquery/jquery-3.3.1.js
• W embedded-javascript-library
  • usr/share/doc/libfest-reflect-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libfest-reflect-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui