Andreas Tille

At the time of the last Lintian run, the following possible problems were found in packages maintained by Andreas Tille <tille@debian.org>, listed by source package. See also the report showing only errors and warnings. Also see their QA overview.

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

abacas

• W manpage-has-errors-from-man
  • usr/share/man/man1/abacas.1.gz 20: warning [p 1, 3.0i, div 'an-div', 0.0i]: cannot adjust line

• I debian-rules-parses-dpkg-parsechangelog
  • (line 10)
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 130)
  • debian/changelog (line 187)
  • debian/changelog (line 220)
  • debian/control (line 36)
  • debian/control (line 59)
  • debian/control (line 79)
• I out-of-date-standards-version
  • 3.9.8 (released 2016-04-06) (current is 4.3.0)
• I quilt-patch-missing-description
  • remove_response.pdf.patch
• P source-contains-prebuilt-javascript-object
  • doc/extra_javascript/jQuery-jQuery-UI-Dialog-Enhancement-Plugin-dialogextend/build/jquery.dialogextend.min.js
  • doc/extra_javascript/jquery.dialogextend.min.js
• O source-is-missing
  • doc/extra_javascript/jquery.dialogextend.min.js
• I unused-file-paragraph-in-dep5-copyright
  • paragraph at line 15
• I wildcard-matches-nothing-in-dep5-copyright
  • doc/versioning/leaflet.cls (paragraph at line 15)

abinit

• X binary-file-built-without-LFS-support
  • usr/bin/abinit
  • usr/bin/multibinit
• W binary-without-manpage
  • usr/bin/aim
  • usr/bin/anaddb
  • usr/bin/band2eps
  • usr/bin/bsepostproc
  • usr/bin/conducti
  • usr/bin/cut3d
  • usr/bin/dummy_tests
  • usr/bin/fftprof
  • usr/bin/fold2Bloch
  • usr/bin/ioprof
  • usr/bin/lapackprof
  • usr/bin/macroave
  • usr/bin/mrgddb
  • usr/bin/mrgdv
  • usr/bin/mrggkk
  • usr/bin/mrgscr
  • usr/bin/optic
  • usr/bin/tdep
  • usr/bin/ujdet
  • usr/bin/vdw_kernelgen
• I hardening-no-bindnow
  • usr/bin/abinit
  • usr/bin/aim
  • usr/bin/anaddb
  • usr/bin/band2eps
  • usr/bin/bsepostproc
  • usr/bin/conducti
  • usr/bin/cut3d
  • usr/bin/dummy_tests
  • usr/bin/fftprof
  • usr/bin/fold2Bloch
  • usr/bin/ioprof
  • usr/bin/lapackprof
  • usr/bin/macroave
  • usr/bin/mrgddb
  • usr/bin/mrgdv
  • usr/bin/mrggkk
  • usr/bin/mrgscr
  • usr/bin/multibinit
  • usr/bin/optic
  • usr/bin/tdep
  • usr/bin/ujdet
  • usr/bin/vdw_kernelgen
• I spelling-error-in-binary
  • usr/bin/abinit ADVICED ADVISED
  • usr/bin/abinit Coul Could
  • usr/bin/abinit Informations Information
  • usr/bin/abinit Recomended Recommended
  • usr/bin/abinit Reseting Resetting
  • usr/bin/abinit Skiping Skipping
  • usr/bin/abinit accomodate accommodate
  • usr/bin/abinit buil build
  • usr/bin/abinit choosen chosen
  • usr/bin/abinit desactivate deactivate
  • usr/bin/abinit developped developed
  • usr/bin/abinit doesnt doesn't
  • usr/bin/abinit embarrasing embarrassing
  • usr/bin/abinit enought enough
  • usr/bin/abinit explicitely explicitly
  • usr/bin/abinit forbiden forbidden
  • usr/bin/abinit happend happened
  • usr/bin/abinit indeces indices
  • usr/bin/abinit istead instead
  • usr/bin/abinit keywork keyword
  • usr/bin/abinit leat least
  • usr/bin/abinit meaningfull meaningful
  • usr/bin/abinit occured occurred
  • usr/bin/abinit occurence occurrence
  • usr/bin/abinit occurences occurrences
  • usr/bin/abinit permit to permit one to
  • usr/bin/abinit retured returned
  • usr/bin/abinit segement segment
  • usr/bin/abinit tranformation transformation
  • usr/bin/abinit unknow unknown
  • usr/bin/abinit upto up to
  • usr/bin/abinit withthe with the
  • usr/bin/abinit writen written
  • usr/bin/aim keywork keyword
  • usr/bin/aim occurence occurrence
  • usr/bin/aim occurences occurrences
  • usr/bin/aim succesfully successfully
  • usr/bin/anaddb Informations Information
  • usr/bin/anaddb accomodate accommodate
  • usr/bin/anaddb explicitely explicitly
  • usr/bin/anaddb keywork keyword
  • usr/bin/anaddb occurence occurrence
  • usr/bin/anaddb occurences occurrences
  • usr/bin/anaddb upto up to
  • usr/bin/band2eps Informations Information
  • usr/bin/band2eps keywork keyword
  • usr/bin/band2eps occurence occurrence
  • usr/bin/band2eps occurences occurrences
  • usr/bin/conducti accomodate accommodate
  • usr/bin/conducti explicitely explicitly
  • usr/bin/conducti upto up to
  • usr/bin/cut3d accomodate accommodate
  • usr/bin/cut3d explicitely explicitly
  • usr/bin/cut3d lenth length
  • usr/bin/cut3d preceeded preceded
  • usr/bin/cut3d upto up to
  • usr/bin/fold2Bloch accomodate accommodate
  • usr/bin/fold2Bloch explicitely explicitly
  • usr/bin/fold2Bloch upto up to
  • usr/bin/ioprof accomodate accommodate
  • usr/bin/ioprof explicitely explicitly
  • usr/bin/ioprof upto up to
  • usr/bin/mrgddb Informations Information
  • usr/bin/mrgddb keywork keyword
  • usr/bin/mrgddb occurence occurrence
  • usr/bin/mrgddb occurences occurrences
  • usr/bin/mrgdv explicitely explicitly
  • usr/bin/mrggkk accomodate accommodate
  • usr/bin/mrggkk explicitely explicitly
  • usr/bin/mrggkk upto up to
  • usr/bin/mrgscr accomodate accommodate
  • usr/bin/mrgscr explicitely explicitly
  • usr/bin/mrgscr retured returned
  • usr/bin/mrgscr unknow unknown
  • usr/bin/mrgscr upto up to
  • usr/bin/multibinit Recomended Recommended
  • usr/bin/multibinit Reseting Resetting
  • usr/bin/multibinit Skiping Skipping
  • usr/bin/multibinit accomodate accommodate
  • usr/bin/multibinit begining beginning
  • usr/bin/multibinit choosen chosen
  • usr/bin/multibinit desactivate deactivate
  • usr/bin/multibinit doesnt doesn't
  • usr/bin/multibinit embarrasing embarrassing
  • usr/bin/multibinit enought enough
  • usr/bin/multibinit explicitely explicitly
  • usr/bin/multibinit forbiden forbidden
  • usr/bin/multibinit happend happened
  • usr/bin/multibinit informations information
  • usr/bin/multibinit istead instead
  • usr/bin/multibinit keywork keyword
  • usr/bin/multibinit leat least
  • usr/bin/multibinit meaningfull meaningful
  • usr/bin/multibinit occured occurred
  • usr/bin/multibinit occurence occurrence
  • usr/bin/multibinit occurences occurrences
  • usr/bin/multibinit permit to permit one to
  • usr/bin/multibinit segement segment
  • usr/bin/multibinit somes some
  • usr/bin/multibinit upto up to
  • usr/bin/optic accomodate accommodate
  • usr/bin/optic explicitely explicitly
  • usr/bin/optic upto up to
  • usr/bin/tdep Informations Information
  • usr/bin/tdep explicitely explicitly
  • usr/bin/tdep independant independent
  • usr/bin/tdep keywork keyword
  • usr/bin/tdep occurence occurrence
  • usr/bin/tdep occurences occurrences
  • usr/bin/tdep symetric symmetric
  • usr/bin/tdep upto up to
  • usr/bin/ujdet keywork keyword
  • usr/bin/ujdet occurence occurrence
  • usr/bin/ujdet occurences occurrences

abinit-doc

• I package-contains-empty-directory
  • usr/share/doc/abinit/html/presentation/
• I possible-documentation-but-no-doc-base-registration

• X debian-watch-does-not-check-gpg-signature

abyss

• X binary-file-built-without-LFS-support
  • usr/lib/abyss/KAligner
  • usr/lib/abyss/PathConsensus
  • usr/lib/abyss/abyss-align

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://ftp.sanger.ac.uk/pub/project/acedb/SUPPORTED/ACEDB-source\.([0-9.]+)\.tar\.gz
• P source-contains-empty-directory
  • waction/
  • wdemo/database/
  • wdoc/Interfaces/
  • wemap/
  • whelp/syntax/
  • wsyn/
  • wt1/
• I testsuite-autopkgtest-missing

acedb-other

• X binary-file-built-without-LFS-support
  • usr/bin/efetch [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/efetch [amd64, i386]

• X debian-watch-does-not-check-gpg-signature

adapterremoval

• X binary-file-built-without-LFS-support
  • usr/bin/AdapterRemoval
• I hardening-no-fortify-functions
  • usr/bin/AdapterRemoval
• W privacy-breach-generic
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)
• I spelling-error-in-binary
  • usr/bin/AdapterRemoval pres press
• I spelling-error-in-manpage
  • usr/share/man/man1/AdapterRemoval.1.gz ambigious ambiguous
  • usr/share/man/man1/AdapterRemoval.1.gz succesfully successfully

• X debian-watch-does-not-check-gpg-signature

adapterremoval

• I hardening-no-fortify-functions
  • usr/bin/AdapterRemoval
• W privacy-breach-generic
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)
• I spelling-error-in-manpage
  • usr/share/man/man1/AdapterRemoval.1.gz ambigious ambiguous
  • usr/share/man/man1/AdapterRemoval.1.gz succesfully successfully

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

adun-core

• X binary-file-built-without-LFS-support
  • usr/bin/AdunServer
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
  • usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1
  • usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so.0.6
• X shlib-calls-exit
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
  • usr/lib/adun.app/libXMLLib.so.0.1
  • usr/lib/adun.app/libadun_base.so.0.0.1
• I spelling-error-in-binary
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 accesible accessible
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 onthe on the
  • usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1 CONECT CONNECT

adun.app

• X binary-file-built-without-LFS-support
  • usr/lib/GNUstep/Applications/UL.app/UL
• I wrong-section-according-to-package-name
  • adun.app => gnustep

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)
• I testsuite-autopkgtest-missing

aeskulap

• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/aeskulap.desktop [amd64, i386]

• X debian-watch-does-not-check-gpg-signature

alien-hunter

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• W package-installs-java-bytecode
  • usr/share/alien_hunter/ChangepointLeft$1.class
  • usr/share/alien_hunter/ChangepointLeft.class
  • usr/share/alien_hunter/ChangepointRight$1.class
  • usr/share/alien_hunter/ChangepointRight.class

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 132)
  • debian/changelog (line 134)
  • debian/changelog (line 244)
  • debian/changelog (line 58)
• I testsuite-autopkgtest-missing

altree (1.3.1-7+b1; main)

• I hardening-no-bindnow
  • usr/lib/i386-linux-gnu/perl5/5.28/auto/ALTree/CUtils/CUtils.so
  • usr/lib/x86_64-linux-gnu/perl5/5.28/auto/ALTree/CUtils/CUtils.so
• I spelling-error-in-manpage
  • usr/share/man/man1/altree.1p.gz allows to allows one to

altree-examples

• X duplicate-files
  • usr/share/doc/altree-examples/create_file/phy-paml_file/NUM usr/share/doc/altree-examples/create_file/phy-paml_file/nb_cas_control.txt usr/share/doc/altree-examples/paml/unrooted_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/phylip/ancestor_absent/association/nb_cas_controls.txt usr/share/doc/altree-examples/phylip/outgroup_absent/association/nb_cas_controls.txt
  • usr/share/doc/altree-examples/create_file/phy-paml_file/trio.phy usr/share/doc/altree-examples/create_file/phy-paml_file/trio.prephy
  • usr/share/doc/altree-examples/paml/tree_building_using_phyML/trio2.phy usr/share/doc/altree-examples/paml/unrooted_absent/association/trio2.phy usr/share/doc/altree-examples/paml/unrooted_present/association/trio2.phy usr/share/doc/altree-examples/paml/unrooted_present/localisation/trio2.phy
  • usr/share/doc/altree-examples/paml/tree_building_using_phyML/trio2.phy_phyml_tree.txt usr/share/doc/altree-examples/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt usr/share/doc/altree-examples/paml/unrooted_present/association/trio2.phy_phyml_tree.txt usr/share/doc/altree-examples/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt
  • usr/share/doc/altree-examples/paml/unrooted_absent/association/baseml.ctl usr/share/doc/altree-examples/paml/unrooted_present/association/baseml.ctl
  • usr/share/doc/altree-examples/paml/unrooted_absent/association/rst1 usr/share/doc/altree-examples/paml/unrooted_present/association/rst1 usr/share/doc/altree-examples/paml/unrooted_present/localisation/rst1
  • usr/share/doc/altree-examples/paml/unrooted_present/association/nb_cas_control.txt usr/share/doc/altree-examples/paml/unrooted_present/localisation/nb_cas_controls.txt
  • usr/share/doc/altree-examples/paup/ancestor_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/ancestor_absent/localisation/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_absent/localisation/nb_cas_control.txt usr/share/doc/altree-examples/paup/unrooted_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/unrooted_absent/localisation/nb_cas_control.txt
  • usr/share/doc/altree-examples/paup/ancestor_present/association/caco.paup usr/share/doc/altree-examples/paup/ancestor_present/localisation/caco.paup
  • usr/share/doc/altree-examples/paup/ancestor_present/localisation/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_present/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_present/localisation/nb_cas_control.txt
  • usr/share/doc/altree-examples/paup/outgr_absent/association/caco.paup usr/share/doc/altree-examples/paup/outgr_absent/localisation/caco.paup usr/share/doc/altree-examples/paup/outgr_present/association/caco.paup usr/share/doc/altree-examples/paup/outgr_present/localisation/caco.paup
  • usr/share/doc/altree-examples/paup/outgr_absent/localisation/caco.loc usr/share/doc/altree-examples/paup/outgr_present/localisation/caco.loc
  • usr/share/doc/altree-examples/paup/unrooted_present/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/unrooted_present/localisation/nb_cas_control.txt
  • usr/share/doc/altree-examples/phylip/outgroup_absent/association/outfile.gz usr/share/doc/altree-examples/phylip/outgroup_present/association/outfile.gz
  • usr/share/doc/altree-examples/phylip/outgroup_absent/association/outtree.gz usr/share/doc/altree-examples/phylip/outgroup_present/association/outtree.gz
  • usr/share/doc/altree-examples/phylip/outgroup_absent/association/trio.phy usr/share/doc/altree-examples/phylip/outgroup_present/association/trio.phy

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 149)

amap-align

• X binary-file-built-without-LFS-support
  • usr/bin/amap [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/amap [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 148)
  • debian/changelog (line 29)
  • debian/changelog (line 293)
  • debian/changelog (line 38)
  • debian/changelog (line 40)
  • debian/changelog (line 41)
  • debian/changelog (line 42)
  • debian/changelog (line 50)
  • debian/changelog (line 75)
  • debian/changelog (line 84)
  • debian/changelog (line 85)
  • debian/control (line 4)
• P source-contains-empty-directory
  • doc/reference/tmpl/
• I testsuite-autopkgtest-missing
• P wiki-copyright-format-uri
  • http://wiki.debian.org/Proposals/CopyrightFormat

amide (1.0.5-12+b1; main)

• X binary-file-built-without-LFS-support
  • usr/bin/amide
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GFDL
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/amide.desktop
• I spelling-error-in-binary
  • usr/bin/amide caculate calculate
  • usr/bin/amide discontinous discontinuous
  • usr/bin/amide reseting resetting

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 111)
  • debian/changelog (line 186)
  • debian/changelog (line 191)
  • debian/rules (line 37)
• P source-contains-empty-directory
  • bin/
• I testsuite-autopkgtest-missing

ampliconnoise

• X binary-file-built-without-LFS-support
  • usr/bin/FCluster [amd64, i386]
  • usr/bin/FastaUnique [amd64, i386]
  • usr/bin/NDist [amd64, i386]
  • usr/bin/Perseus [amd64, i386]
  • usr/bin/PerseusD [amd64, i386]
  • usr/bin/PyroDist [amd64, i386]
  • usr/bin/PyroNoise [amd64, i386]
  • usr/bin/PyroNoiseA [amd64, i386]
  • usr/bin/PyroNoiseM [amd64, i386]
  • usr/bin/SeqDist [amd64, i386]
  • usr/bin/SeqNoise [amd64, i386]
  • usr/bin/SplitClusterClust [amd64, i386]
  • usr/bin/SplitClusterEven [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/FCluster [amd64, i386]
  • usr/bin/FastaUnique [amd64, i386]
  • usr/bin/NDist [amd64, i386]
  • usr/bin/Perseus [amd64, i386]
  • usr/bin/PerseusD [amd64, i386]
  • usr/bin/PyroDist [amd64, i386]
  • usr/bin/PyroNoise [amd64, i386]
  • usr/bin/PyroNoiseA [amd64, i386]
  • usr/bin/PyroNoiseM [amd64, i386]
  • usr/bin/SeqDist [amd64, i386]
  • usr/bin/SeqNoise [amd64, i386]
  • usr/bin/SplitClusterClust [amd64, i386]
  • usr/bin/SplitClusterEven [amd64, i386]

ampliconnoise-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/1d/02c5065511784c6f83d548dc53f7aa46f9dffa.debug
  • usr/lib/debug/.build-id/94/29e99411a34a807f13179d30280fcd2ca002b3.debug

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bioinf.eva.mpg.de/anfo/
• P file-contains-trailing-whitespace
  • debian/changelog (line 73)
• I testsuite-autopkgtest-missing

anfo

• I spelling-error-in-manpage
  • usr/share/man/man1/anfo-tool.1.gz choosen chosen [amd64, i386]
  • usr/share/man/man1/anfo-tool.1.gz occuring occurring [amd64, i386]
  • usr/share/man/man1/anfo-tool.1.gz representaion representation [amd64, i386]
  • usr/share/man/man1/anfo.1.gz optinally optionally [amd64, i386]

libanfo0

• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libanfo.so.0.0.0
  • usr/lib/x86_64-linux-gnu/libanfo.so.0.0.0
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libanfo.so.0.0.0
  • usr/lib/x86_64-linux-gnu/libanfo.so.0.0.0

• I debian-rules-parses-dpkg-parsechangelog
  • (line 9)
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://download.arb-home.de/release/
• P file-contains-trailing-whitespace
  • debian/changelog (line 123)
  • debian/changelog (line 129)
  • debian/changelog (line 174)
  • debian/changelog (line 282)
  • debian/changelog (line 53)
  • debian/changelog (line 725)
  • debian/changelog (line 88)
  • debian/changelog (line 91)
  • debian/rules (line 117)
  • debian/rules (line 4)
  • debian/rules (line 97)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• X maybe-not-arch-all-binnmuable
  • arb -> arb-common
• I missing-explanation-for-contrib-or-non-free-package
• I testsuite-autopkgtest-missing

arb

• I hardening-no-bindnow
  • usr/lib/arb/bin/CAP2 [amd64, i386]
  • usr/lib/arb/bin/Restriction [amd64, i386]
  • usr/lib/arb/bin/Zuk_to_gen [amd64, i386]
  • usr/lib/arb/bin/arb_2_ascii [amd64, i386]
  • usr/lib/arb/bin/arb_2_bin [amd64, i386]
  • usr/lib/arb/bin/arb_a2ps [amd64, i386]
  • usr/lib/arb/bin/arb_consensus_tree [amd64, i386]
  • usr/lib/arb/bin/arb_convert_aln [amd64, i386]
  • usr/lib/arb/bin/arb_db_server [amd64, i386]
  • usr/lib/arb/bin/arb_dist [amd64, i386]
  • usr/lib/arb/bin/arb_dnarates [amd64, i386]
  • usr/lib/arb/bin/arb_edit4 [amd64, i386]
  • usr/lib/arb/bin/arb_export_rates [amd64, i386]
  • usr/lib/arb/bin/arb_export_tree [amd64, i386]
  • usr/lib/arb/bin/arb_flush_mem [amd64, i386]
  • usr/lib/arb/bin/arb_gene_probe [amd64, i386]
  • usr/lib/arb/bin/arb_help2xml [amd64, i386]
  • usr/lib/arb/bin/arb_message [amd64, i386]
  • usr/lib/arb/bin/arb_naligner [amd64, i386]
  • usr/lib/arb/bin/arb_name_server [amd64, i386]
  • usr/lib/arb/bin/arb_notify [amd64, i386]
  • usr/lib/arb/bin/arb_ntree [amd64, i386]
  • usr/lib/arb/bin/arb_pars [amd64, i386]
  • usr/lib/arb/bin/arb_phylo [amd64, i386]
  • usr/lib/arb/bin/arb_primer [amd64, i386]
  • usr/lib/arb/bin/arb_probe [amd64, i386]
  • usr/lib/arb/bin/arb_proto_2_xsub [amd64, i386]
  • usr/lib/arb/bin/arb_pt_server [amd64, i386]
  • usr/lib/arb/bin/arb_read_tree [amd64, i386]
  • usr/lib/arb/bin/arb_replace [amd64, i386]
  • usr/lib/arb/bin/arb_rnacma [amd64, i386]
  • usr/lib/arb/bin/arb_treegen [amd64, i386]
  • usr/lib/arb/bin/arb_wetc [amd64, i386]
  • usr/lib/arb/bin/axml [amd64, i386]
  • usr/lib/arb/bin/clustalv [amd64, i386]
  • usr/lib/arb/bin/count [amd64, i386]
  • usr/lib/arb/bin/findall [amd64, i386]
  • usr/lib/arb/bin/lsadt [amd64, i386]
  • usr/lib/arb/bin/sho_helix [amd64, i386]
  • usr/lib/arb/bin/varpos [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/arb/bin/CAP2 [amd64, i386]
  • usr/lib/arb/bin/Restriction [amd64, i386]
  • usr/lib/arb/bin/Zuk_to_gen [amd64, i386]
  • usr/lib/arb/bin/arb_a2ps [amd64, i386]
  • usr/lib/arb/bin/arb_treegen [amd64, i386]
  • usr/lib/arb/bin/axml [amd64, i386]
  • usr/lib/arb/bin/clustalv [amd64, i386]
  • usr/lib/arb/bin/count [amd64, i386]
  • usr/lib/arb/bin/findall [amd64, i386]
  • usr/lib/arb/bin/lsadt [amd64, i386]
  • usr/lib/arb/bin/sho_helix [amd64, i386]
  • usr/lib/arb/bin/varpos [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/arb/bin/arb_consensus_tree lengH length [amd64, i386]
  • usr/lib/arb/bin/arb_db_server doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_dist doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_edit4 Wont Won't [amd64, i386]
  • usr/lib/arb/bin/arb_edit4 doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_export_tree lengH length [amd64, i386]
  • usr/lib/arb/bin/arb_naligner aligne align [amd64, i386]
  • usr/lib/arb/bin/arb_naligner doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_naligner enought enough [amd64, i386]
  • usr/lib/arb/bin/arb_name_server doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_ntree Likelyhood Likelihood [amd64, i386]
  • usr/lib/arb/bin/arb_ntree Mor More [amd64, i386]
  • usr/lib/arb/bin/arb_ntree doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_ntree lengH length [amd64, i386]
  • usr/lib/arb/bin/arb_ntree pres press [amd64, i386]
  • usr/lib/arb/bin/arb_pars doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_probe doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_pt_server doesnt doesn't [amd64, i386]
• I spelling-error-in-copyright
  • explicite explicit [amd64, i386]
  • wont won't [amd64, i386]

arb-common

• W duplicate-changelog-files
  • usr/share/doc/arb-common/arb_CHANGES.txt.gz usr/share/doc/arb-common/changelog.gz usr/share/doc/arb/arb_CHANGES.txt.gz
• X duplicate-files
  • usr/share/doc/arb-common/arb_LICENSE.txt.gz usr/share/doc/arb/arb_LICENSE.txt.gz
  • usr/share/doc/arb-common/arb_README.txt.gz usr/share/doc/arb/arb_README.txt.gz
  • usr/share/doc/arb-common/examples/demo.arb.gz usr/share/doc/arb/examples/demo.arb.gz
• I package-contains-documentation-outside-usr-share-doc
  • usr/lib/arb/PERL_SCRIPTS/BIOPERL/README
  • usr/lib/arb/SH/README
  • usr/share/arb/motifHack/README
• I spelling-error-in-copyright
  • explicite explicit
  • wont won't
• I unused-override
  • package-contains-timestamped-gzip usr/lib/arb/lib/help/*.gz

arb-doc

• I spelling-error-in-copyright
  • explicite explicit
  • wont won't

libarb

• I hardening-no-bindnow
  • usr/lib/arb/lib/ARB.so [amd64, i386]
  • usr/lib/arb/lib/libARBDB.so [amd64, i386]
  • usr/lib/arb/lib/libAWT.so [amd64, i386]
  • usr/lib/arb/lib/libCORE.so [amd64, i386]
  • usr/lib/arb/lib/libWINDOW.so [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/arb/lib/libARBDB.so colums columns [amd64, i386]
• I spelling-error-in-copyright
  • explicite explicit [amd64, i386]
  • wont won't [amd64, i386]

libarb-dev

• I spelling-error-in-binary
  • usr/lib/arb/SL/TREE_WRITE/TREE_WRITE.a lengH length
• I spelling-error-in-copyright
  • explicite explicit [amd64, i386]
  • wont won't [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

arden

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• X duplicate-files
  • usr/share/doc/arden/html/frames.html usr/share/doc/arden/html/index.html

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

art-nextgen-simulation-tools

• I spelling-error-in-binary
  • usr/bin/art_454 unreconized unrecognized [amd64, i386]
  • usr/bin/art_SOLiD lenght length [amd64, i386]
  • usr/bin/art_SOLiD unreconized unrecognized [amd64, i386]

art-nextgen-simulation-tools-profiles

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/art-nextgen-simulation-tools/ART_profiler_454/README
  • usr/share/art-nextgen-simulation-tools/ART_profiler_illumina/README

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 44)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-prebuilt-java-object
  • test/cobertura-lib/asm-6.0.jar
  • test/cobertura-lib/asm-analysis-6.0.jar
  • test/cobertura-lib/asm-commons-6.0.jar
  • test/cobertura-lib/asm-tree-6.0.jar
  • test/cobertura-lib/asm-util-6.0.jar
  • test/cobertura-lib/asm-xml-6.0.jar
  • test/cobertura-lib/cobertura-2.1.1.jar
  • test/cobertura-lib/commons-lang3-3.3.2.jar
  • test/cobertura-lib/hamcrest-core-1.3.jar
  • test/cobertura-lib/jaxen-1.1.4.jar
  • test/cobertura-lib/jetty-6.1.14.jar
  • test/cobertura-lib/jetty-util-6.1.14.jar
  • test/cobertura-lib/junit-4.11.jar
  • test/cobertura-lib/logback-classic-1.0.13.jar
  • test/cobertura-lib/logback-core-1.0.13.jar
  • test/cobertura-lib/oro-2.0.8.jar
  • test/cobertura-lib/servlet-api-2.5-6.1.14.jar
  • test/cobertura-lib/slf4j-api-1.7.5.jar
  • test/evosuite-lib/evosuite-1.0.5.jar
  • test/evosuite-lib/evosuite-standalone-runtime-1.0.5.jar
  • test/evosuite-lib/logback-classic-1.1.3.jar
  • test/evosuite-lib/slf4j-api-1.7.22.jar
  • test/jacoco-lib/jacocoagent.jar
  • test/jacoco-lib/jacocoant.jar

artemis

• I arch-dep-package-has-big-usr-share
  • 11283kB 100%
• X package-contains-no-arch-dependent-files

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

• X debian-watch-does-not-check-gpg-signature
• P no-dep5-copyright
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

artha

• X binary-file-built-without-LFS-support
  • usr/bin/artha
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• P copyright-with-old-dh-make-debian-copyright
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/artha.desktop

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://vina.scripps.edu/download.html
• P unversioned-copyright-format-uri
  • http://dep.debian.net/deps/dep5/

autodock-vina (1.1.2-5+b1; main)

• P debian-changelog-line-too-short
  • DEP5 (line 15) [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/vina [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/vina inconsisent inconsistent [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-2-download-page/
• P file-contains-trailing-whitespace
  • debian/changelog (line 178)
  • debian/changelog (line 211)
  • debian/changelog (line 260)
  • debian/control (line 83)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • autodock/Tests/AutoDockTools/

autodock

• X binary-file-built-without-LFS-support
  • usr/bin/autodock4
• I spelling-error-in-binary
  • usr/bin/autodock4 conect connect [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/autodock4.1.gz perfoms performs [amd64, i386]

autogrid

• X binary-file-built-without-LFS-support
  • usr/bin/autogrid4

• W changelog-should-mention-nmu
• W debian-rules-should-not-set-CFLAGS-from-noopt
• X debian-watch-does-not-check-gpg-signature
• P duplicate-in-relation-field
  • in source build-depends: dh-python, dh-python
• P file-contains-trailing-whitespace
  • debian/changelog (line 131)
  • debian/changelog (line 247)
  • debian/changelog (line 269)
  • debian/control (line 100)
  • debian/control (line 101)
  • debian/control (line 104)
  • debian/control (line 105)
  • debian/control (line 117)
  • debian/control (line 118)
  • debian/control (line 119)
  • debian/control (line 120)
  • debian/control (line 121)
  • debian/control (line 124)
  • debian/control (line 125)
  • debian/control (line 139)
  • debian/control (line 140)
  • debian/control (line 141)
  • debian/control (line 142)
  • debian/control (line 154)
  • debian/control (line 155)
  • debian/control (line 156)
  • debian/control (line 157)
  • debian/control (line 171)
  • debian/control (line 172)
  • debian/control (line 173)
  • debian/control (line 174)
  • debian/control (line 186)
  • debian/control (line 187)
  • debian/control (line 188)
  • debian/control (line 211)
  • debian/control (line 212)
  • debian/control (line 213)
  • debian/control (line 53)
  • debian/control (line 54)
  • debian/control (line 55)
  • debian/control (line 56)
  • debian/control (line 57)
  • debian/control (line 60)
  • debian/control (line 61)
  • debian/control (line 74)
  • debian/control (line 75)
  • debian/control (line 76)
  • debian/control (line 77)
  • debian/control (line 78)
  • debian/control (line 81)
  • debian/control (line 82)
  • debian/control (line 97)
  • debian/control (line 98)
  • debian/control (line 99)
  • debian/rules (line 1)
  • debian/rules (line 145)
  • debian/rules (line 158)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 9
• W python-foo-but-no-python3-foo
  • python-ball
  • python-ballview
• W source-nmu-has-incorrect-version-number
  • 1.4.3~beta1-3
• W spelling-error-in-patch-description
  • debian/patches/fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch comparision comparison
  • debian/patches/link_against_x11.patch explicitely explicitly
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ball.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ball.git

• W debian-rules-should-not-set-CFLAGS-from-noopt
• X debian-watch-does-not-check-gpg-signature
• P duplicate-in-relation-field
  • in source build-depends: dh-python, dh-python
• P file-contains-trailing-whitespace
  • debian/changelog (line 146)
  • debian/changelog (line 262)
  • debian/changelog (line 284)
  • debian/control (line 100)
  • debian/control (line 101)
  • debian/control (line 104)
  • debian/control (line 105)
  • debian/control (line 117)
  • debian/control (line 118)
  • debian/control (line 119)
  • debian/control (line 120)
  • debian/control (line 121)
  • debian/control (line 124)
  • debian/control (line 125)
  • debian/control (line 139)
  • debian/control (line 140)
  • debian/control (line 141)
  • debian/control (line 142)
  • debian/control (line 154)
  • debian/control (line 155)
  • debian/control (line 156)
  • debian/control (line 157)
  • debian/control (line 171)
  • debian/control (line 172)
  • debian/control (line 173)
  • debian/control (line 174)
  • debian/control (line 186)
  • debian/control (line 187)
  • debian/control (line 188)
  • debian/control (line 211)
  • debian/control (line 212)
  • debian/control (line 213)
  • debian/control (line 53)
  • debian/control (line 54)
  • debian/control (line 55)
  • debian/control (line 56)
  • debian/control (line 57)
  • debian/control (line 60)
  • debian/control (line 61)
  • debian/control (line 74)
  • debian/control (line 75)
  • debian/control (line 76)
  • debian/control (line 77)
  • debian/control (line 78)
  • debian/control (line 81)
  • debian/control (line 82)
  • debian/control (line 97)
  • debian/control (line 98)
  • debian/control (line 99)
  • debian/rules (line 1)
  • debian/rules (line 145)
  • debian/rules (line 158)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 10
• W python-foo-but-no-python3-foo
  • python-ball
  • python-ballview
• W spelling-error-in-patch-description
  • debian/patches/fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch comparision comparison
  • debian/patches/link_against_x11.patch explicitely explicitly
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ball.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ball.git

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 1)
  • debian/rules (line 133)
• P package-does-not-install-examples
  • doc/examples/
• W python-foo-but-no-python3-foo
  • python-ball
• I testsuite-autopkgtest-missing

ballview

• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/ballview.desktop [amd64, i386]
• W desktop-mime-but-no-exec-code
  • usr/share/applications/ballview.desktop [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/ballview/BALLView [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/ballview/BALLView dont don't [amd64, i386]
  • usr/lib/ballview/BALLView informations information [amd64, i386]

libball1.5

• X binary-file-built-without-LFS-support
  • usr/lib/libBALL.so.1.5
• W dev-pkg-without-shlib-symlink
  • usr/lib/libBALL.so.1.5 usr/lib/libBALL.so [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/libBALL.so.1.5 [amd64, i386]
• I no-symbols-control-file
  • usr/lib/libBALL.so.1.5 [amd64, i386]
• X shlib-calls-exit
  • usr/lib/libBALL.so.1.5 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/libBALL.so.1.5 CONECT CONNECT [amd64, i386]
  • usr/lib/libBALL.so.1.5 Differnt Different [amd64, i386]
  • usr/lib/libBALL.so.1.5 childs children [amd64, i386]
  • usr/lib/libBALL.so.1.5 enought enough [amd64, i386]
  • usr/lib/libBALL.so.1.5 errorneous erroneous [amd64, i386]
  • usr/lib/libBALL.so.1.5 featues features [amd64, i386]
  • usr/lib/libBALL.so.1.5 implmented implemented [amd64, i386]
  • usr/lib/libBALL.so.1.5 paramters parameters [amd64, i386]
  • usr/lib/libBALL.so.1.5 registerd registered [amd64, i386]
  • usr/lib/libBALL.so.1.5 seperator separator [amd64, i386]
  • usr/lib/libBALL.so.1.5 standart standard [amd64, i386]
  • usr/lib/libBALL.so.1.5 unkown unknown [amd64, i386]
  • usr/lib/libBALL.so.1.5 woNT won't [amd64, i386]

libball1.5-dev

• W breaks-without-version
  • libball1.3-dev [amd64, i386]

libball1.5-doc

• X duplicate-files
  • usr/share/doc/libball1.5/html/BALL/d0/d11/a12635.html usr/share/doc/libball1.5/html/BALL/db/d7f/a12638.html
  • usr/share/doc/libball1.5/html/BALL/d0/d15/a12596.html usr/share/doc/libball1.5/html/BALL/da/d87/a12599.html
  • usr/share/doc/libball1.5/html/BALL/d2/d0c/a12611.html usr/share/doc/libball1.5/html/BALL/d4/dbf/a12614.html
  • usr/share/doc/libball1.5/html/BALL/search/all_0.js usr/share/doc/libball1.5/html/BALL/search/groups_0.js
  • usr/share/doc/libball1.5/html/BALL/search/all_1.js usr/share/doc/libball1.5/html/BALL/search/defines_0.js
  • usr/share/doc/libball1.5/html/BALL/search/all_1c.js usr/share/doc/libball1.5/html/BALL/search/functions_1a.js

libballview1.5

• W dev-pkg-without-shlib-symlink
  • usr/lib/libVIEW.so.1.5 usr/lib/libVIEW.so [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/libVIEW.so.1.5 [amd64, i386]
• I no-symbols-control-file
  • usr/lib/libVIEW.so.1.5 [amd64, i386]
• O package-name-doesnt-match-sonames
  • libVIEW1.5 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/libVIEW.so.1.5 Dont Don't [amd64, i386]
  • usr/lib/libVIEW.so.1.5 Informations Information [amd64, i386]
  • usr/lib/libVIEW.so.1.5 Uknown Unknown [amd64, i386]
  • usr/lib/libVIEW.so.1.5 an other another [amd64, i386]
  • usr/lib/libVIEW.so.1.5 beeing being [amd64, i386]
  • usr/lib/libVIEW.so.1.5 calulate calculate [amd64, i386]
  • usr/lib/libVIEW.so.1.5 choosen chosen [amd64, i386]
  • usr/lib/libVIEW.so.1.5 correspoding corresponding [amd64, i386]
  • usr/lib/libVIEW.so.1.5 doesnt doesn't [amd64, i386]
  • usr/lib/libVIEW.so.1.5 executeable executable [amd64, i386]
  • usr/lib/libVIEW.so.1.5 mininum minimum [amd64, i386]
  • usr/lib/libVIEW.so.1.5 orgin origin [amd64, i386]
  • usr/lib/libVIEW.so.1.5 reseting resetting [amd64, i386]
  • usr/lib/libVIEW.so.1.5 succesfully successfully [amd64, i386]
  • usr/lib/libVIEW.so.1.5 unkown unknown [amd64, i386]

libballview1.5-dev

• W breaks-without-version
  • libballview1.3-dev [amd64, i386]
• O package-contains-empty-directory
  • usr/lib/ [amd64, i386]

python-ball

• X package-contains-no-arch-dependent-files

• X debian-watch-does-not-check-gpg-signature
• X deprecated-configure-filename
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libbambamc0

• X binary-file-built-without-LFS-support
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
• I hardening-no-bindnow
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
  • usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
  • usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50

• I debian-rules-contains-unnecessary-get-orig-source-target
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 39)
  • debian/changelog (line 41)

libbamtools-doc

• X duplicate-files
  • usr/share/doc/libbamtools-dev/html/search/all_10.js usr/share/doc/libbamtools-dev/html/search/variables_d.js
  • usr/share/doc/libbamtools-dev/html/search/all_15.js usr/share/doc/libbamtools-dev/html/search/variables_12.js
  • usr/share/doc/libbamtools-dev/html/search/all_17.js usr/share/doc/libbamtools-dev/html/search/variables_13.js
  • usr/share/doc/libbamtools-dev/html/search/all_18.js usr/share/doc/libbamtools-dev/html/search/functions_12.js
  • usr/share/doc/libbamtools-dev/html/search/all_4.js usr/share/doc/libbamtools-dev/html/search/functions_3.js
  • usr/share/doc/libbamtools-dev/html/search/all_7.js usr/share/doc/libbamtools-dev/html/search/functions_6.js
  • usr/share/doc/libbamtools-dev/html/search/all_9.js usr/share/doc/libbamtools-dev/html/search/functions_8.js
  • usr/share/doc/libbamtools-dev/html/search/all_a.js usr/share/doc/libbamtools-dev/html/search/variables_7.js

libbamtools2.5.1

• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libbamtools.so.2.5.1
  • usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1
• X shlib-calls-exit
  • usr/lib/i386-linux-gnu/libbamtools.so.2.5.1
  • usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 22)
• I testsuite-autopkgtest-missing

bandage

• X binary-file-built-without-LFS-support
  • usr/bin/Bandage
• I hardening-no-bindnow
  • usr/bin/Bandage
• I spelling-error-in-binary
  • usr/bin/Bandage multipled multiplied
  • usr/bin/Bandage occurence occurrence
  • usr/bin/Bandage occurences occurrences

• X debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • src/cimg/
• I testsuite-autopkgtest-missing

beads

• X binary-file-built-without-LFS-support
  • usr/bin/beads [amd64, i386]
  • usr/bin/qtbeads [amd64, i386]
• W binary-without-manpage
  • usr/bin/qtbeads [amd64, i386]
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/beads.desktop [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/beads assignement assignment [amd64, i386]
  • usr/bin/qtbeads assignement assignment [amd64, i386]
  • usr/bin/qtbeads developped developed [amd64, i386]
  • usr/bin/qtbeads occured occurred [amd64, i386]
• I spelling-error-in-copyright
  • therefor therefore [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I file-contains-fixme-placeholder
  • debian/rules:51 FIXME
• P source-contains-empty-directory
  • lib/
  • release_phylogeography/common/lib/
• I testsuite-autopkgtest-missing

beast-mcmc

• W binary-without-manpage
  • usr/bin/beast-tracer
  • usr/bin/loganalyser
  • usr/bin/logcombiner
  • usr/bin/treeannotator
  • usr/bin/treestat

beast-mcmc-examples

• X duplicate-files
  • usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/freqs_zs.csv usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/freqs.csv
  • usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/inirates.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/rates_zs.csv.gz

libnucleotidelikelihoodcore0

• I hardening-no-bindnow
  • usr/lib/libNucleotideLikelihoodCore.so.0 [amd64, i386]
• I no-symbols-control-file
  • usr/lib/libNucleotideLikelihoodCore.so.0 [amd64, i386]

libnucleotidelikelihoodcore0-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/11/336cba535f09f330aa77ab501ab24505e96674.debug
  • usr/lib/debug/.build-id/ab/aa72b0f526f2d22d2ebef6b661b7be5e6c1454.debug

• X debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • lib/bundler/
• I testsuite-autopkgtest-missing

beast2-mcmc-doc

• I possible-documentation-but-no-doc-base-registration

beast2-mcmc-examples

• X duplicate-files
  • usr/share/doc/beast-mcmc/examples/nexus/26.nex.gz usr/share/doc/beast-mcmc/examples/nexus/gopher.nex.gz

• X debian-watch-does-not-check-gpg-signature

bedtools

• W binary-without-manpage
  • usr/bin/annotateBed [amd64, i386]
  • usr/bin/bamToBed [amd64, i386]
  • usr/bin/bamToFastq [amd64, i386]
  • usr/bin/bed12ToBed6 [amd64, i386]
  • usr/bin/bedToBam [amd64, i386]
  • usr/bin/bedToIgv [amd64, i386]
  • usr/bin/bedpeToBam [amd64, i386]
  • usr/bin/bedtools [amd64, i386]
  • usr/bin/closestBed [amd64, i386]
  • usr/bin/clusterBed [amd64, i386]
  • usr/bin/complementBed [amd64, i386]
  • usr/bin/coverageBed [amd64, i386]
  • usr/bin/expandCols [amd64, i386]
  • usr/bin/fastaFromBed [amd64, i386]
  • usr/bin/flankBed [amd64, i386]
  • usr/bin/genomeCoverageBed [amd64, i386]
  • usr/bin/getOverlap [amd64, i386]
  • usr/bin/groupBy [amd64, i386]
  • usr/bin/intersectBed [amd64, i386]
  • usr/bin/linksBed [amd64, i386]
  • usr/bin/mapBed [amd64, i386]
  • usr/bin/maskFastaFromBed [amd64, i386]
  • usr/bin/mergeBed [amd64, i386]
  • usr/bin/multiBamCov [amd64, i386]
  • usr/bin/multiIntersectBed [amd64, i386]
  • usr/bin/nucBed [amd64, i386]
  • usr/bin/pairToBed [amd64, i386]
  • usr/bin/pairToPair [amd64, i386]
  • usr/bin/randomBed [amd64, i386]
  • usr/bin/shiftBed [amd64, i386]
  • usr/bin/shuffleBed [amd64, i386]
  • usr/bin/slopBed [amd64, i386]
  • usr/bin/sortBed [amd64, i386]
  • usr/bin/subtractBed [amd64, i386]
  • usr/bin/tagBam [amd64, i386]
  • usr/bin/unionBedGraphs [amd64, i386]
  • usr/bin/windowBed [amd64, i386]
  • usr/bin/windowMaker [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/bedtools coul could [amd64, i386]
  • usr/bin/bedtools ment meant [amd64, i386]
  • usr/bin/bedtools postive positive [amd64, i386]

bedtools-test

• W executable-not-elf-or-script
  • usr/share/bedtools/data/knownGene.hg18.chr21.bed
  • usr/share/bedtools/test/sort/b.bed
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/bedtools/test/fisher/README.md
• W script-not-executable
  • usr/share/bedtools/test/bamtobed/test-bamtobed.sh
  • usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
  • usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
  • usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/closest/test-closest.sh
  • usr/share/bedtools/test/cluster/test-cluster.sh
  • usr/share/bedtools/test/complement/test-complement.sh
  • usr/share/bedtools/test/expand/test-expand.sh
  • usr/share/bedtools/test/fisher/cmp.sh
  • usr/share/bedtools/test/fisher/get.sh
  • usr/share/bedtools/test/fisher/shuf.sh
  • usr/share/bedtools/test/fisher/test-fisher.sh
  • usr/share/bedtools/test/flank/test-flank.sh
  • usr/share/bedtools/test/general/test-general.sh
  • usr/share/bedtools/test/getfasta/test-getfasta.sh
  • usr/share/bedtools/test/groupby/test-groupby.sh
  • usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
  • usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/intersect/test-intersect.sh
  • usr/share/bedtools/test/jaccard/test-jaccard.sh
  • usr/share/bedtools/test/makewindows/test-makewindows.sh
  • usr/share/bedtools/test/map/test-map.sh
  • usr/share/bedtools/test/merge/test-merge.sh
  • usr/share/bedtools/test/multicov/test-multicov.sh
  • usr/share/bedtools/test/negativecontrol/test-negativecontrol.sh
  • usr/share/bedtools/test/reldist/test-reldist.sh
  • usr/share/bedtools/test/sample/test-sample.sh
  • usr/share/bedtools/test/shift/test-shift.sh
  • usr/share/bedtools/test/shuffle/test-shuffle.sh
  • usr/share/bedtools/test/slop/test-slop.sh
  • usr/share/bedtools/test/sort/test-sort.sh
  • usr/share/bedtools/test/spacing/test-spacing.sh
  • usr/share/bedtools/test/split/test-split.sh
  • usr/share/bedtools/test/subtract/test-subtract.sh

• X debian-watch-does-not-check-gpg-signature

bio-tradis

• X application-in-library-section
  • perl usr/bin/add_tradis_tags usr/bin/bacteria_tradis usr/bin/check_tradis_tags usr/bin/combine_tradis_plots usr/bin/filter_tradis_tags usr/bin/remove_tradis_tags usr/bin/tradis_comparison usr/bin/tradis_comparison.R usr/bin/tradis_essentiality usr/bin/tradis_essentiality.R usr/bin/tradis_gene_insert_sites usr/bin/tradis_merge_plots usr/bin/tradis_plot
• W binary-without-manpage
  • usr/bin/tradis_comparison.R
  • usr/bin/tradis_essentiality.R

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.bioinformatics.org/biococoa/downloads/
• P file-contains-trailing-whitespace
  • debian/changelog (line 87)
• P package-does-not-use-debhelper-or-cdbs
• P source-contains-empty-directory
  • BCAppKit/2.0-cleanup/
  • BCFoundation/2.0-cleanup/
  • BCFoundation/Tests/TestFiles/
• I testsuite-autopkgtest-missing

libbiococoa-dev (2.2.2-4+b1; main)

• P debian-changelog-line-too-short
  • DEP5 (line 4) [amd64, i386]
• I possible-documentation-but-no-doc-base-registration

libbiococoa2 (2.2.2-4+b1; main)

• X binary-file-built-without-LFS-support
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
• P debian-changelog-line-too-short
  • DEP5 (line 4) [amd64, i386]
• I hardening-no-bindnow
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 [amd64, i386]
• X shlib-calls-exit
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 [amd64, i386]

libbiococoa2-dbgsym (2.2.2-4+b1; main)

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/25/4436612893978a6efabcfe669210232d8d43d7.debug
  • usr/lib/debug/.build-id/9c/c8ea88fd296f6ce77fb4915fac219023d3d5a5.debug

• X debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • reports/
• I testsuite-autopkgtest-missing

libbiojava-java

• I javalib-but-no-public-jars
• I possible-documentation-but-no-doc-base-registration

libbiojava-java-demos

• X duplicate-files
  • usr/share/doc/libbiojava-java-demos/examples/dp/fake.fasta.gz usr/share/doc/libbiojava-java-demos/examples/files/fake.fasta.gz
  • usr/share/doc/libbiojava-java-demos/examples/dp/fakepromoter.xml.gz usr/share/doc/libbiojava-java-demos/examples/files/fakepromoter.xml.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/AL121903.embl.gz usr/share/doc/libbiojava-java-demos/examples/gff/AL121903.embl.gz usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.embl.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/AL121903.genbank.gz usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.genbank.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/varC4-2.gff.gz usr/share/doc/libbiojava-java-demos/examples/gff/varC4-2.gff.gz

libbiojava-java-doc

• X duplicate-files
  • usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js usr/share/doc/libbiojava-java/api/jquery/jquery-3.3.1.js
• W embedded-javascript-library
  • usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• X debian-watch-does-not-check-gpg-signature

libbio-perl-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Root::Exception.3pm.gz
  • usr/share/man/man3/Bio::Root::IO.3pm.gz
  • usr/share/man/man3/Bio::Root::Root.3pm.gz
  • usr/share/man/man3/Bio::Root::RootI.3pm.gz
  • usr/share/man/man3/Bio::Root::Storable.3pm.gz
  • usr/share/man/man3/Bio::Root::Test.3pm.gz
  • usr/share/man/man3/Bio::Root::Utilities.3pm.gz
  • usr/share/man/man3/Bio::Root::Version.3pm.gz
  • usr/share/man/man3/Bio::Tools::SeqPattern::Backtranslate.3pm.gz
  • usr/share/man/man3/Bio::TreeIO::NewickParser.3pm.gz
  • usr/share/man/man3/Bio::TreeIO::newick.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/Bio::SeqIO::bsml.3pm.gz 299: warning [p 4, 0.2i]: can't break line
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/perl5/Bio/Symbol/README.Symbol
  • usr/share/perl5/Bio/Tools/Run/README
• I spelling-error-in-manpage
  • usr/share/man/man3/Bio::Seq::LargeSeqI.3pm.gz resetable resettable
  • usr/share/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3pm.gz desribe describe
  • usr/share/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3pm.gz desribe describe
  • usr/share/man/man3/Bio::Tools::Run::WrapperBase::CommandExts.3pm.gz contruction construction

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 119)
  • debian/changelog (line 167)
• X libmodule-build-perl-needs-to-be-in-build-depends
• X upstream-metadata-file-is-missing

bioperl-run

• O script-with-language-extension
  • usr/bin/bp_multi_hmmsearch.pl
  • usr/bin/bp_panalysis.pl
  • usr/bin/bp_papplmaker.pl
  • usr/bin/bp_run_neighbor.pl
  • usr/bin/bp_run_protdist.pl
• I unused-override
  • script-with-language-extension usr/bin/bp_bioperl_application_installer.pl

libbio-perl-run-perl

• I extended-description-is-probably-too-short
• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::FastTree.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Raxml.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Primate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Prints.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Profile.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Signalp.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::TribeMCL.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Vista.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::DB::SoapEUtilities::Result.3pm.gz:419
  • usr/share/man/man3/Bio::Tools::Run::ERPIN.3pm.gz:321
• I spelling-error-in-manpage
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz arugment argument
  • usr/share/man/man3/Bio::Tools::Run::Analysis::soap.3pm.gz allows to allows one to
  • usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm.gz argment argument
  • usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm.gz retrive retrieve
  • usr/share/man/man3/Bio::Tools::Run::Hmmer.3pm.gz specifiy specify
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phast::PhyloFit.3pm.gz flexability flexibility
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Neighbor.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm.gz documetation documentation
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz bootstap bootstrap
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz orginal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phyml.3pm.gz explicitely explicitly
  • usr/share/man/man3/Bio::Tools::Run::StandAloneBlastPlus.3pm.gz exeception exception

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://eddylab.org/software/squid/
• P file-contains-trailing-whitespace
  • debian/changelog (line 127)
  • debian/changelog (line 36)
  • debian/changelog (line 38)
  • debian/changelog (line 39)
  • debian/changelog (line 41)
  • debian/changelog (line 42)
  • debian/changelog (line 44)
  • debian/changelog (line 45)
  • debian/changelog (line 46)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • Scripts/
  • Shiva/

biosquid

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/revcomp [amd64, i386]

libsquid-dev

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]

libsquid1

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libsquid.so.1.0.0
  • usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 [amd64, i386]
• X shlib-calls-exit
  • usr/lib/i386-linux-gnu/libsquid.so.1.0.0
  • usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 79)
  • debian/rules (line 80)
• I testsuite-autopkgtest-missing

bitseq

• W binary-without-manpage
  • usr/bin/biocUpdate [amd64, i386]
  • usr/bin/checkTR [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/LGPL [amd64, i386]
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python) [amd64, i386]

• I testsuite-autopkgtest-missing

blends-common

• O executable-menu-file
  • usr/share/menu/blend-menu 0755
• E missing-depends-on-sensible-utils
  • usr/share/menu/blend-menu
• O postinst-does-not-call-updatemenus
  • usr/share/menu/blend-menu

blends-dev

• I unused-override
  • binary-package-depends-on-toolchain-package depends: debhelper (>= 9)

• I testsuite-autopkgtest-missing

blends-common

• O executable-menu-file
  • usr/share/menu/blend-menu 0755
• O postinst-does-not-call-updatemenus
  • usr/share/menu/blend-menu

blends-dev

• I unused-override
  • binary-package-depends-on-toolchain-package depends: debhelper (>= 9)

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/blimps-([0-9.]+)\.tar\.gz
• I testsuite-autopkgtest-missing

blimps-examples

• X duplicate-files
  • usr/share/doc/blimps-examples/examples/processor/distribution/fasta.in.seqs usr/share/doc/blimps-examples/examples/processor/distribution/stockholm.in.seqs
• X package-contains-no-arch-dependent-files

blimps-utils

• X duplicate-files
  • usr/share/doc/blimps-utils/html/biased_blocks.html usr/share/doc/blimps-utils/html/biassed_blocks.html

libblimps3

• I no-symbols-control-file
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0
• X shlib-calls-exit
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0
• I spelling-error-in-binary
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 nam name
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 occured occurred
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 outputing outputting
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 retur return

• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 11)
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 130)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I override_dh_auto_test-does-not-check-DEB_BUILD_OPTIONS
  • (line 45)
• P package-uses-old-debhelper-compat-version
  • 9
• W spelling-error-in-patch-description
  • debian/patches/gcc-64bit.patch unfortunatly unfortunately
• I vcs-field-uses-insecure-uri
  • vcs-svn svn://anonscm.debian.org/debian-med/trunk/packages/bowtie/trunk/
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/viewvc/debian-med/trunk/packages/bowtie/trunk/
  • vcs-svn svn://anonscm.debian.org/debian-med/trunk/packages/bowtie/trunk/

bowtie-examples

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/LGPL

• X debian-watch-does-not-check-gpg-signature

bowtie

• O binary-without-manpage
  • usr/bin/bowtie-align-l
  • usr/bin/bowtie-align-l-debug
  • usr/bin/bowtie-align-s
  • usr/bin/bowtie-align-s-debug
  • usr/bin/bowtie-build-l
  • usr/bin/bowtie-build-l-debug
  • usr/bin/bowtie-build-s
  • usr/bin/bowtie-build-s-debug
  • usr/bin/bowtie-inspect-l
  • usr/bin/bowtie-inspect-l-debug
  • usr/bin/bowtie-inspect-s
  • usr/bin/bowtie-inspect-s-debug
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• X duplicate-files
  • usr/share/doc/bowtie/tests/example1.out usr/share/doc/bowtie/tests/example3.out usr/share/doc/bowtie/tests/example8.out
  • usr/share/doc/bowtie/tests/example6.out usr/share/doc/bowtie/tests/example9.out

• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.3.0)
• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 3)
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 131)
  • debian/changelog (line 132)
  • debian/changelog (line 138)
  • debian/changelog (line 145)
  • debian/changelog (line 152)
  • debian/changelog (line 153)
  • debian/changelog (line 170)
  • debian/changelog (line 29)
  • debian/changelog (line 71)
  • debian/changelog (line 72)
  • debian/changelog (line 73)
  • debian/changelog (line 79)
  • debian/changelog (line 90)
  • debian/control (line 24)
  • debian/control (line 25)
  • debian/control (line 26)
  • debian/control (line 27)
  • debian/control (line 30)
  • debian/control (line 39)
  • debian/control (line 40)
  • debian/control (line 41)
  • debian/control (line 42)
  • debian/control (line 45)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 9
• W patch-file-present-but-not-mentioned-in-series
  • fix_makefile_machine_detection.patch
• W unnecessary-testsuite-autopkgtest-field
• I vcs-field-uses-insecure-uri
  • vcs-git git://anonscm.debian.org/debian-med/bowtie2.git
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bowtie2.git
  • vcs-git git://anonscm.debian.org/debian-med/bowtie2.git

bowtie2-examples

• I example-incorrect-path-for-interpreter
  • usr/share/doc/bowtie2/examples/scripts/debug_wrapper.pl (#!/usr/bin/env perl != /usr/bin/perl)

• X debian-watch-does-not-check-gpg-signature

bowtie2

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• X debian-watch-does-not-check-gpg-signature

boxshade

• X binary-file-built-without-LFS-support
  • usr/lib/boxshade/boxshade

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 6)
  • debian/changelog (line 73)
  • debian/rules (line 12)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

bppphyview

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I extended-description-is-probably-too-short
• I spelling-error-in-copyright
  • therefor therefore [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 153)
  • debian/changelog (line 48)
  • debian/changelog (line 54)
• I testsuite-autopkgtest-missing

bppsuite

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/bppdist [amd64, i386]
  • usr/bin/bppmixedlikelihoods [amd64, i386]
  • usr/bin/bpppopstats [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/bppalnscore occurence occurrence [amd64, i386]
  • usr/bin/bppancestor particularily particularly [amd64, i386]
  • usr/bin/bppmixedlikelihoods particularily particularly [amd64, i386]
  • usr/bin/bppml particularily particularly [amd64, i386]
  • usr/bin/bpppopstats ouptut output [amd64, i386]
  • usr/bin/bppseqgen begining beginning [amd64, i386]
  • usr/bin/bpptreedraw controler controller [amd64, i386]
• I spelling-error-in-copyright
  • therefor therefore [amd64, i386]

bppsuite-examples

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• X duplicate-files
  • usr/share/doc/bppsuite-examples/examples/MaximumLikelihood/Nucleotides/Homogeneous/Ancestor.bpp usr/share/doc/bppsuite-examples/examples/MaximumLikelihood/Nucleotides/NonHomogeneousGeneral/Ancestor.bpp
• I spelling-error-in-copyright
  • therefor therefore

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)
• P source-contains-empty-directory
  • bin/
  • lib/
• I testsuite-autopkgtest-missing

brig

• W bad-jar-name
  • usr/share/java/BRIG-0.95.jar [amd64, i386]
• W binary-without-manpage
  • usr/bin/brig [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• X package-contains-no-arch-dependent-files

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)

bwa

• I spelling-error-in-manpage
  • usr/share/man/man1/bwa.1.gz extentions extensions
  • usr/share/man/man1/bwa.1.gz occurence occurrence
  • usr/share/man/man1/bwa.1.gz openning opening
  • usr/share/man/man1/bwa.1.gz ouptut output
  • usr/share/man/man1/bwa.1.gz overriden overridden

• I debian-rules-parses-dpkg-parsechangelog
  • (line 9)
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 7)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

cain

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/cain.desktop
• I package-contains-documentation-outside-usr-share-doc
  • usr/include/cain/loki/readme.txt

cain-examples

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/cain/examples/cain/dsmts23/Readme.txt
  • usr/share/cain/examples/sbml/dsmts31/README.txt

• X debian-watch-does-not-check-gpg-signature
• P package-does-not-install-examples
  • sdk/libraries/qtpropertybrowser/examples/

libcamitk-dev

• W breaks-without-version
  • libvtk6-dev [amd64, i386]
  • libvtk6-java [amd64, i386]
  • libvtk6-jni [amd64, i386]
  • libvtk6-qt-dev [amd64, i386]
• X development-package-ships-elf-binary-in-path
  • usr/bin/camitk-cepgenerator [amd64, i386]
  • usr/bin/camitk-testactions [amd64, i386]
  • usr/bin/camitk-testcomponents [amd64, i386]
  • usr/bin/camitk-wizard [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/camitk-testcomponents [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/camitk-wizard exemple example [amd64, i386]
  • usr/bin/camitk-wizard leAT least [amd64, i386]
  • usr/bin/camitk-wizard wether whether [amd64, i386]

libcamitk4

• I no-symbols-control-file
  • usr/lib/libcamitkcore.so.4.1.2 [amd64, i386]
  • usr/lib/libmonitoring.so.4.1.2 [amd64, i386]
• O package-name-doesnt-match-sonames
  • libcamitkcore4 libmonitoring4 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/camitk-4.1/actions/libmml.so.4.1.2 Pres Press
  • usr/lib/camitk-4.1/components/libdicom.so.4.1.2 Serie Series [amd64, i386]
  • usr/lib/libcamitkcore.so.4.1.2 Substract Subtract [amd64, i386]
  • usr/lib/libmonitoring.so.4.1.2 Pres Press
  • usr/lib/libmonitoring.so.4.1.2 ment meant

libcamitk4-data

• I duplicated-compressed-file
  • usr/share/camitk-4.1/testdata/BigEndianCompressed.img.gz

libqtpropertybrowser-dev

• X package-contains-no-arch-dependent-files

libqtpropertybrowser4

• I no-symbols-control-file
  • usr/lib/libqtpropertybrowser.so.4.1.2 [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• W debian-watch-file-should-mangle-version
  • line 3
• P source-contains-empty-directory
  • bin/lib/
  • db/cogs/
  • db/comparison_genomes/
  • sample_projects/sample_project_1/analysis/
  • sample_projects/sample_project_2/analysis/
  • sample_projects/sample_project_3/analysis/
  • sample_projects/sample_project_4/blast/
  • sample_projects/sample_project_5/analysis/
  • sample_projects/sample_project_5/blast/
  • sample_projects/sample_project_6/analysis/
  • sample_projects/sample_project_6/features/
  • sample_projects/test_blastn/analysis/
  • sample_projects/test_blastn/features/
  • sample_projects/test_blastp/analysis/
  • sample_projects/test_blastp/blast/blast_db/
  • sample_projects/test_blastp/blast/blast_results_local/
  • sample_projects/test_blastp/comparison_genomes/proteins/
  • sample_projects/test_blastp/features/
  • sample_projects/test_blastx/analysis/
  • sample_projects/test_blastx/blast/blast_db/
  • sample_projects/test_blastx/blast/blast_results_local/
  • sample_projects/test_blastx/comparison_genomes/proteins/
  • sample_projects/test_blastx/features/
  • sample_projects/test_orfs/analysis/
  • sample_projects/test_orfs/blast/
  • sample_projects/test_orfs/comparison_genomes/
  • sample_projects/test_orfs/features/
  • sample_projects/test_plots/analysis/
  • sample_projects/test_plots/blast/
  • sample_projects/test_plots/comparison_genomes/
  • sample_projects/test_plots/features/
  • sample_projects/test_tblastn/analysis/
  • sample_projects/test_tblastn/features/
  • sample_projects/test_tblastx/analysis/
  • sample_projects/test_tblastx/features/

cct

• W executable-not-elf-or-script
  • usr/share/cct/lib/assign_cogs/assign_cogs.pl
  • usr/share/cct/lib/cgview_xml_builder/cgview_xml_builder.pl
  • usr/share/cct/lib/convert_vcf_to_features/test.sh
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/cct/lib/assign_cogs/README.txt
  • usr/share/cct/lib/cgview_xml_builder/README.txt
  • usr/share/cct/lib/convert_vcf_to_features/README.txt
  • usr/share/cct/lib/get_cds/README.txt
  • usr/share/cct/lib/get_orfs/README.txt
  • usr/share/cct/lib/local_blast_client/README.txt
  • usr/share/cct/lib/ncbi_search/README.txt
  • usr/share/cct/lib/sequence_to_multi_fasta/README.txt

cct-examples

• X duplicate-files
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_2/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_3/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_4/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_5/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_6/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastn/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastp/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastx/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_orfs/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_plots/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_tblastn/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/cgview_xml_builder.pl.gz
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_a.png usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_b.png
  • usr/share/doc/cct/examples/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk.gz usr/share/doc/cct/examples/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_end_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_end_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_end_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_end_of_orf_rev_comp.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_start_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_start_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_start_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_start_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_start_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_start_of_orf_rev_comp.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_end_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_end_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_end_of_orf.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_end_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_end_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_end_of_orf_rev_comp.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_start_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_start_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_start_of_orf.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_start_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_start_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_start_of_orf_rev_comp.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_blastp/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_blastx/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_plots/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_tblastn/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_tblastx/maps/medium.html
  • usr/share/doc/cct/examples/sample_projects/test_blastn/maps/medium.png usr/share/doc/cct/examples/sample_projects/test_blastx/maps/medium.png usr/share/doc/cct/examples/sample_projects/test_tblastx/maps/medium.png
  • usr/share/doc/cct/examples/sample_projects/test_blastn/reference_genome/split/two_copies_of_long_ORF_opposite_directions.fasta_split.gz usr/share/doc/cct/examples/sample_projects/test_blastx/reference_genome/split/two_copies_of_long_ORF_opposite_directions.fasta_split.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/reference_genome/split/two_copies_of_long_ORF_opposite_directions.fasta_split.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastn/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_blastp/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_blastx/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_tblastn/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastp/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_blastx/comparison_genomes/match_end_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastp/comparison_genomes/match_start_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_blastx/comparison_genomes/match_start_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastp/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs.gz usr/share/doc/cct/examples/sample_projects/test_tblastn/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastx/maps/cgview_xml/medium.xml.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/maps/cgview_xml/medium.xml.gz
• I package-contains-empty-directory
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_2/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_3/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_4/blast/
  • usr/share/doc/cct/examples/sample_projects/sample_project_5/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_5/blast/
  • usr/share/doc/cct/examples/sample_projects/sample_project_6/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_6/features/
  • usr/share/doc/cct/examples/sample_projects/test_blastn/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_blastn/features/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/blast/blast_db/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/blast/blast_results_local/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/comparison_genomes/proteins/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/features/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/blast/blast_db/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/blast/blast_results_local/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/comparison_genomes/proteins/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/features/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/blast/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/comparison_genomes/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/features/
  • usr/share/doc/cct/examples/sample_projects/test_plots/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_plots/blast/
  • usr/share/doc/cct/examples/sample_projects/test_plots/comparison_genomes/
  • usr/share/doc/cct/examples/sample_projects/test_plots/features/
  • usr/share/doc/cct/examples/sample_projects/test_tblastn/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_tblastn/features/
  • usr/share/doc/cct/examples/sample_projects/test_tblastx/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_tblastx/features/

• I debian-rules-parses-dpkg-parsechangelog
  • (line 12)
  • (line 13)
• X debian-watch-does-not-check-gpg-signature
• I file-contains-fixme-placeholder
  • debian/rules:71 FIXME
• P file-contains-trailing-whitespace
  • debian/changelog (line 95)
  • debian/control (line 26)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

cd-hit

• X binary-file-built-without-LFS-support
  • usr/lib/cd-hit/cd-hit [amd64, i386]
  • usr/lib/cd-hit/cd-hit-2d [amd64, i386]
  • usr/lib/cd-hit/cd-hit-454 [amd64, i386]
  • usr/lib/cd-hit/cd-hit-div [amd64, i386]
  • usr/lib/cd-hit/cd-hit-est [amd64, i386]
  • usr/lib/cd-hit/cd-hit-est-2d [amd64, i386]
• W binary-without-manpage
  • usr/bin/cdhit [amd64, i386]
  • usr/bin/cdhit-2d [amd64, i386]
  • usr/bin/cdhit-454 [amd64, i386]
  • usr/bin/cdhit-est [amd64, i386]
  • usr/bin/cdhit-est-2d [amd64, i386]
  • usr/bin/clstr2tree [amd64, i386]
  • usr/bin/clstr_merge [amd64, i386]
  • usr/bin/clstr_merge_noorder [amd64, i386]
  • usr/bin/clstr_reduce [amd64, i386]
  • usr/bin/clstr_renumber [amd64, i386]
  • usr/bin/clstr_rev [amd64, i386]
  • usr/bin/clstr_sort_by [amd64, i386]
  • usr/bin/clstr_sort_prot_by [amd64, i386]
  • usr/bin/make_multi_seq [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/cd-hit/cd-hit-div writen written [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/cd-hit-2d-para.1.gz requred required [amd64, i386]
  • usr/share/man/man1/cd-hit-para.1.gz requred required [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 42)
  • debian/changelog (line 50)
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 0.99-20100722
• I testsuite-autopkgtest-missing

cdbfasta

• I hardening-no-fortify-functions
  • usr/bin/cdbfasta [amd64, i386]
  • usr/bin/cdbyank [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 10
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/centrifuge.git
  • vcs-git https://anonscm.debian.org/git/debian-med/centrifuge.git

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

centrifuge

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I hardening-no-fortify-functions
  • usr/lib/centrifuge/centrifuge-build-bin
  • usr/lib/centrifuge/centrifuge-class
  • usr/lib/centrifuge/centrifuge-inspect-bin
• I possible-documentation-but-no-doc-base-registration
• W zero-byte-file-in-doc-directory
  • usr/share/doc/centrifuge/html/manual.inc.html

• W build-depends-on-python-sphinx-only
• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)
• W python-foo-but-no-python3-foo
  • python-cfflib
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

• X debian-watch-does-not-check-gpg-signature
• P insane-line-length-in-source-file
  • src/ca/ualberta/stothard/cgview/includes/overlib.js line length is 562 characters (>512)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • ca/ualberta/stothard/cgview/
  • lib/
• P source-contains-prebuilt-javascript-object
  • src/ca/ualberta/stothard/cgview/includes/overlib.js line length is 562 characters (>512)
• O source-is-missing
  • src/ca/ualberta/stothard/cgview/includes/overlib.js line length is 562 characters (>512)
• I testsuite-autopkgtest-missing

cgview

• X package-contains-no-arch-dependent-files

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libcharls2

• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libCharLS.so.2.0
  • usr/lib/x86_64-linux-gnu/libCharLS.so.2.0
• I symbols-file-missing-build-depends-package-field

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 375)
  • debian/rules (line 67)
• I override_dh_auto_test-does-not-check-DEB_BUILD_OPTIONS
  • (line 29)
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

cimg-dev

• I spelling-error-in-copyright
  • therefor therefore

cimg-doc

• X duplicate-files
  • usr/share/doc/cimg-dev/html/images/centre.jpg usr/share/doc/cimg-dev/html/images/centre_no_repeat.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_box3d.jpg usr/share/doc/cimg-dev/html/ref_box3d.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_colormap_cool.jpg usr/share/doc/cimg-dev/html/ref_colormap_cool.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_colormap_cube.jpg usr/share/doc/cimg-dev/html/ref_colormap_cube.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_colormap_default.jpg usr/share/doc/cimg-dev/html/ref_colormap_default.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_colormap_flag.jpg usr/share/doc/cimg-dev/html/ref_colormap_flag.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_colormap_hot.jpg usr/share/doc/cimg-dev/html/ref_colormap_hot.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_colormap_hsv.jpg usr/share/doc/cimg-dev/html/ref_colormap_hsv.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_colormap_jet.jpg usr/share/doc/cimg-dev/html/ref_colormap_jet.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_colormap_lines.jpg usr/share/doc/cimg-dev/html/ref_colormap_lines.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_cone3d.jpg usr/share/doc/cimg-dev/html/ref_cone3d.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_constructor1.jpg usr/share/doc/cimg-dev/html/ref_constructor1.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_constructor2.jpg usr/share/doc/cimg-dev/html/ref_constructor2.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_cut.jpg usr/share/doc/cimg-dev/html/ref_cut.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_cylinder3d.jpg usr/share/doc/cimg-dev/html/ref_cylinder3d.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_elevation3d.jpg usr/share/doc/cimg-dev/html/ref_elevation3d.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_ellipsoid3d.jpg usr/share/doc/cimg-dev/html/ref_ellipsoid3d.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_equalize.jpg usr/share/doc/cimg-dev/html/ref_equalize.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_histogram.jpg usr/share/doc/cimg-dev/html/ref_histogram.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_image.jpg usr/share/doc/cimg-dev/html/ref_image.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_index.jpg usr/share/doc/cimg-dev/html/ref_index.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_isoline3d.jpg usr/share/doc/cimg-dev/html/ref_isoline3d.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_isosurface3d.jpg usr/share/doc/cimg-dev/html/ref_isosurface3d.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_map.jpg usr/share/doc/cimg-dev/html/ref_map.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_noise.jpg usr/share/doc/cimg-dev/html/ref_noise.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_norm.jpg usr/share/doc/cimg-dev/html/ref_norm.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_normalize.jpg usr/share/doc/cimg-dev/html/ref_normalize.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_normalize2.jpg usr/share/doc/cimg-dev/html/ref_normalize2.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_operator_comma.jpg usr/share/doc/cimg-dev/html/ref_operator_comma.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_operator_eq.jpg usr/share/doc/cimg-dev/html/ref_operator_eq.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_operator_less.jpg usr/share/doc/cimg-dev/html/ref_operator_less.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_operator_minus.jpg usr/share/doc/cimg-dev/html/ref_operator_minus.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_operator_plus.jpg usr/share/doc/cimg-dev/html/ref_operator_plus.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_operator_plus1.jpg usr/share/doc/cimg-dev/html/ref_operator_plus1.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_plane3d.jpg usr/share/doc/cimg-dev/html/ref_plane3d.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_quantize.jpg usr/share/doc/cimg-dev/html/ref_quantize.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_sphere3d.jpg usr/share/doc/cimg-dev/html/ref_sphere3d.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_sqr.jpg usr/share/doc/cimg-dev/html/ref_sqr.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_sqrt.jpg usr/share/doc/cimg-dev/html/ref_sqrt.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_threshold.jpg usr/share/doc/cimg-dev/html/ref_threshold.jpg
  • usr/share/doc/cimg-dev/html/img/reference/ref_torus3d.jpg usr/share/doc/cimg-dev/html/ref_torus3d.jpg
• W privacy-breach-generic
  • usr/share/doc/cimg-dev/html/img/video_blobs.html [<embed src="http://www.youtube.com/v/wocdcffz7z4?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/wocdcffz7z4?version=3)
  • usr/share/doc/cimg-dev/html/img/video_bubble.html [<embed src="http://www.youtube.com/v/oxk6wc4vsbe?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/oxk6wc4vsbe?version=3)
  • usr/share/doc/cimg-dev/html/img/video_bump.html [<embed src="http://www.youtube.com/v/ggjtelq5ahi?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ggjtelq5ahi?version=3)
  • usr/share/doc/cimg-dev/html/img/video_cimgdemo.html [<embed src="http://www.youtube.com/v/mtvhje_ff18?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/mtvhje_ff18?version=3)
  • usr/share/doc/cimg-dev/html/img/video_curveeditor.html [<embed src="http://www.youtube.com/v/vnctzhnxjvy?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/vnctzhnxjvy?version=3)
  • usr/share/doc/cimg-dev/html/img/video_doubletorus.html [<embed src="http://www.youtube.com/v/y1bhhxwsoa4?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/y1bhhxwsoa4?version=3)
  • usr/share/doc/cimg-dev/html/img/video_dtmri.html [<embed src="http://www.youtube.com/v/ip2ituxhcls?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ip2ituxhcls?version=3)
  • usr/share/doc/cimg-dev/html/img/video_fourier.html [<embed src="http://www.youtube.com/v/op0xovmedpe?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/op0xovmedpe?version=3)
  • usr/share/doc/cimg-dev/html/img/video_imagesurface.html [<embed src="http://www.youtube.com/v/olbxh-gkv3u?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/olbxh-gkv3u?version=3)
  • usr/share/doc/cimg-dev/html/img/video_jawbreaker.html [<embed src="http://www.youtube.com/v/3z4jdb-wafs?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/3z4jdb-wafs?version=3)
  • usr/share/doc/cimg-dev/html/img/video_landscape.html [<embed src="http://www.youtube.com/v/i8_wcewwpoo?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/i8_wcewwpoo?version=3)
  • usr/share/doc/cimg-dev/html/img/video_mandelbrot.html [<embed src="http://www.youtube.com/v/ir80v5r9ajm?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/ir80v5r9ajm?version=3)
  • usr/share/doc/cimg-dev/html/img/video_menu.html [<embed src="http://www.youtube.com/v/t0tjzmytisg?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/t0tjzmytisg?version=3)
  • usr/share/doc/cimg-dev/html/img/video_metaballs.html [<embed src="http://www.youtube.com/v/-s_r76oxzyy?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/-s_r76oxzyy?version=3)
  • usr/share/doc/cimg-dev/html/img/video_minipaint.html [<embed src="http://www.youtube.com/v/4hbisksvzki?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/4hbisksvzki?version=3)
  • usr/share/doc/cimg-dev/html/img/video_plasma.html [<embed src="http://www.youtube.com/v/na8hcaykbfo?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/na8hcaykbfo?version=3)
  • usr/share/doc/cimg-dev/html/img/video_reflection.html [<embed src="http://www.youtube.com/v/5wqgkejdrcw?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/5wqgkejdrcw?version=3)
  • usr/share/doc/cimg-dev/html/img/video_shadebobs.html [<embed src="http://www.youtube.com/v/q91cyn6x8ly?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/q91cyn6x8ly?version=3)
  • usr/share/doc/cimg-dev/html/img/video_tetris.html [<embed src="http://www.youtube.com/v/iksy2kceh38?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/iksy2kceh38?version=3)
  • usr/share/doc/cimg-dev/html/img/video_waves.html [<embed src="http://www.youtube.com/v/kne-rxjlddm?version=3" type="application/x-shockwave-flash" allowfullscreen="true" allowscriptaccess="always" width="640" height="390">] (http://www.youtube.com/v/kne-rxjlddm?version=3)
• I spelling-error-in-copyright
  • therefor therefore

cimg-examples

• I spelling-error-in-copyright
  • therefor therefore

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://circos.ca/software/download

circos

• X duplicate-files
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.10e6.txt.gz usr/share/doc/circos/examples/data/heatmap.hs.rn.10e6.txt.gz
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.20e6.txt.gz usr/share/doc/circos/examples/data/heatmap.hs.rn.20e6.txt.gz
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.50e6.txt usr/share/doc/circos/examples/data/heatmap.hs.rn.50e6.txt
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.5e6.txt.gz usr/share/doc/circos/examples/data/heatmap.hs.rn.5e6.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.arabidopsis.tair10.txt usr/share/doc/circos/examples/data/karyotype/karyotype.arabidopsis.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.chimp.pt4.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.chimp.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.drosophila.lowres.dm3.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.drosophila.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.human.hg19.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.human.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.mouse.mm10.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.mouse.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.rat.rn4.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.rat.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.rm.3.txt usr/share/doc/circos/examples/data/karyotype/karyotype.rm.txt
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/circos.1.gz
• I spelling-error-in-manpage
  • usr/share/man/man1/circos.1.gz overide override
  • usr/share/man/man1/circos.1.gz unuseable unusable

fonts-circos-symbols

• I font-outside-font-dir
  • usr/share/circos/fonts/symbols/circossymbols.otf

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://circos.ca/software/download
• P source-contains-empty-directory
  • tools/binlinks/doc/
  • tools/resample/etc/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

circos-tools

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/circos/tools/clustal2link/1/README
  • usr/share/circos/tools/clustal2link/README
  • usr/share/circos/tools/connectogram/README
  • usr/share/circos/tools/tableviewer/README
• I package-contains-empty-directory
  • usr/share/circos/tools/binlinks/doc/
  • usr/share/circos/tools/resample/etc/

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bioinformatics.hungry.com/clearcut/clearcut-([0-9.]+).tar.gz
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)

clearcut

• X binary-file-built-without-LFS-support
  • usr/bin/clearcut [amd64, i386]
• I hardening-no-bindnow
  • usr/bin/clearcut [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/clearcut [amd64, i386]

clearcut-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/5d/5ed8df2679ea71a3917b066eec40301d815c63.debug
  • usr/lib/debug/.build-id/97/6ed010e96903595889314c49b1a36f953a3ae5.debug

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.xavierdidelot.xtreemhost.com/clonalframe.htm
• I testsuite-autopkgtest-missing

clonalframe

• X binary-file-built-without-LFS-support
  • usr/bin/ClonalFrame

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

clonalframeml

• I hardening-no-fortify-functions
  • usr/bin/ClonalFrameML [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

clonalorigin

• X binary-file-built-without-LFS-support
  • usr/bin/warg
• W binary-without-manpage
  • usr/bin/blocksplit
  • usr/bin/computeMedians
  • usr/bin/makeMauveWargFile
• I spelling-error-in-binary
  • usr/bin/warg lik link

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/omega/clustal-omega-(.*)\.tar\.gz
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

clustalo

• X binary-file-built-without-LFS-support
  • usr/bin/clustalo
• I spelling-error-in-binary
  • usr/bin/clustalo exceded exceeded
  • usr/bin/clustalo occured occurred

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/download/current/clustalw-([\.\d]*).tar.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 123)
  • debian/changelog (line 155)
  • debian/changelog (line 202)
  • debian/changelog (line 274)
  • debian/changelog (line 345)
  • debian/changelog (line 377)
  • debian/changelog (line 385)
  • debian/control (line 33)
  • debian/rules (line 19)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

clustalw

• X binary-file-built-without-LFS-support
  • usr/bin/clustalw

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/download/current/clustalx-([\.\d]*).tar.gz
• I testsuite-autopkgtest-missing

clustalx

• X binary-file-built-without-LFS-support
  • usr/bin/clustalx [amd64, i386]
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/clustalx.desktop [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/clustalx Pres Press [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bonsai.hgc.jp/~mdehoon/software/cluster/software.htm
• P file-contains-trailing-whitespace
  • debian/changelog (line 93)
  • debian/rules (line 26)
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 89)

ncoils

• X binary-file-built-without-LFS-support
  • usr/bin/ncoils [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/ncoils [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• O debian-watch-file-should-mangle-version
  • line 3
• P source-contains-empty-directory
  • bin/
  • lib/

concavity

• X binary-file-built-without-LFS-support
  • usr/bin/concavity [amd64, i386]
• X non-consecutive-debian-revision
  • 0.1+dfsg.1-4 -> 0.1+dfsg.1-2 [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 28)
  • debian/changelog (line 31)
  • debian/rules (line 55)

conservation-code

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://gforge.inria.fr/frs/?group_id=3008
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

crac

• W binary-without-manpage
  • usr/bin/crac-client
  • usr/bin/crac-index
• X duplicate-files
  • usr/share/doc/crac/examples/test_f/bug/bug-15677-genome.conf usr/share/doc/crac/examples/test_f/bug/bug-16581-genome.conf
  • usr/share/doc/crac/examples/test_f/bug/bug-15677-genome.ssa.gz usr/share/doc/crac/examples/test_f/bug/bug-16581-genome.ssa.gz
  • usr/share/doc/crac/examples/test_f/index_genomes.sh.trs usr/share/doc/crac/examples/test_f/launch_sg.sh.trs usr/share/doc/crac/examples/test_f/test_index.sh.trs
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/crac.1.gz
• I spelling-error-in-binary
  • usr/bin/crac Erorr Error
  • usr/bin/crac alignement alignment
  • usr/bin/crac informations information
  • usr/bin/crac sould should
  • usr/bin/crac-index informations information
• I spelling-error-in-copyright
  • therefor therefore
• I spelling-error-in-manpage
  • usr/share/man/man1/crac.1.gz alignement alignment
  • usr/share/man/man1/crac.1.gz differents different
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz softwares software

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 9
• P source-contains-hg-tags-file
  • .hgtags
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

python-cram

• X application-in-library-section
  • python usr/bin/cram
• W binary-without-manpage
  • usr/bin/cram
• X library-package-name-for-application
  • usr/bin/cram

python3-cram

• X application-in-library-section
  • python usr/bin/cram3
• W binary-without-manpage
  • usr/bin/cram3
• X library-package-name-for-application
  • usr/bin/cram3

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 186)
  • debian/changelog (line 187)
  • debian/changelog (line 228)
  • debian/changelog (line 252)
  • debian/changelog (line 258)
  • debian/changelog (line 266)
  • debian/changelog (line 272)
  • debian/changelog (line 280)
  • debian/changelog (line 282)
  • debian/changelog (line 302)
  • debian/changelog (line 304)
  • debian/changelog (line 316)
  • debian/changelog (line 320)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

ctn (3.2.0~dfsg-6+b1; main)

• X binary-file-built-without-LFS-support
  • usr/bin/archive_agent
  • usr/bin/archive_cleaner
  • usr/bin/archive_server
  • usr/bin/clone_study
  • usr/bin/commit_agent
  • usr/bin/create_greyscale_module
  • usr/bin/create_print_entry
  • usr/bin/ctndisp
  • usr/bin/ctnnetwork
  • usr/bin/dcm_add_fragments
  • usr/bin/dcm_create_object
  • usr/bin/dcm_ctnto10
  • usr/bin/dcm_diff
  • usr/bin/dcm_dump_compressed
  • usr/bin/dcm_dump_element
  • usr/bin/dcm_dump_file
  • usr/bin/dcm_make_object
  • usr/bin/dcm_map_to_8
  • usr/bin/dcm_mask_image
  • usr/bin/dcm_modify_elements
  • usr/bin/dcm_modify_object
  • usr/bin/dcm_print_dictionary
  • usr/bin/dcm_resize
  • usr/bin/dcm_rm_element
  • usr/bin/dcm_rm_group
  • usr/bin/dcm_snoop
  • usr/bin/dcm_strip_odd_groups
  • usr/bin/dcm_template
  • usr/bin/dcm_to_html
  • usr/bin/dcm_to_text
  • usr/bin/dcm_verify
  • usr/bin/dcm_vr_patterns
  • usr/bin/dcm_x_disp
  • usr/bin/dicom_echo
  • usr/bin/dump_commit_requests
  • usr/bin/enq_ctndisp
  • usr/bin/enq_ctnnetwork
  • usr/bin/ex1_initiator
  • usr/bin/ex2_initiator
  • usr/bin/ex3_acceptor
  • usr/bin/ex3_initiator
  • usr/bin/ex4_acceptor
  • usr/bin/ex4_initiator
  • usr/bin/fillImageDB
  • usr/bin/fillRSA
  • usr/bin/fillRSAImpInterp
  • usr/bin/fis_server
  • usr/bin/gqinitq
  • usr/bin/gqkillq
  • usr/bin/icon_append_file
  • usr/bin/icon_append_index
  • usr/bin/icon_dump_file
  • usr/bin/icon_dump_index
  • usr/bin/image_server
  • usr/bin/kill_ctndisp
  • usr/bin/kill_ctnnetwork
  • usr/bin/load_control
  • usr/bin/mwlQuery
  • usr/bin/pq_ctndisp
  • usr/bin/pq_ctnnetwork
  • usr/bin/print_client
  • usr/bin/print_mgr
  • usr/bin/print_server
  • usr/bin/print_server_display
  • usr/bin/ris_gateway
  • usr/bin/send_image
  • usr/bin/send_results
  • usr/bin/send_study
  • usr/bin/simple_pacs
  • usr/bin/simple_storage
  • usr/bin/snp_to_files
  • usr/bin/storage_classes
  • usr/bin/storage_commit
• I spelling-error-in-binary
  • usr/bin/archive_agent Unexepected Unexpected
  • usr/bin/archive_agent ment meant
  • usr/bin/archive_agent tranport transport
  • usr/bin/archive_agent uniqe unique
  • usr/bin/archive_cleaner Unexepected Unexpected
  • usr/bin/archive_cleaner ment meant
  • usr/bin/archive_cleaner tranport transport
  • usr/bin/archive_cleaner uniqe unique
  • usr/bin/archive_server Unexepected Unexpected
  • usr/bin/archive_server ment meant
  • usr/bin/archive_server tranport transport
  • usr/bin/archive_server uniqe unique
  • usr/bin/clone_study uniqe unique
  • usr/bin/commit_agent Unexepected Unexpected
  • usr/bin/commit_agent ment meant
  • usr/bin/commit_agent tranport transport
  • usr/bin/commit_agent uniqe unique
  • usr/bin/create_greyscale_module ment meant
  • usr/bin/create_print_entry Unexepected Unexpected
  • usr/bin/create_print_entry ment meant
  • usr/bin/create_print_entry tranport transport
  • usr/bin/create_print_entry uniqe unique
  • usr/bin/ctndisp ment meant
  • usr/bin/dcm_add_fragments ment meant
  • usr/bin/dcm_create_object ment meant
  • usr/bin/dcm_ctnto10 ment meant
  • usr/bin/dcm_diff ment meant
  • usr/bin/dcm_dump_compressed ment meant
  • usr/bin/dcm_dump_element ment meant
  • usr/bin/dcm_dump_file ment meant
  • usr/bin/dcm_make_object ment meant
  • usr/bin/dcm_map_to_8 ment meant
  • usr/bin/dcm_mask_image ment meant
  • usr/bin/dcm_modify_elements ment meant
  • usr/bin/dcm_modify_object decription description
  • usr/bin/dcm_modify_object ment meant
  • usr/bin/dcm_print_dictionary uniqe unique
  • usr/bin/dcm_resize ment meant
  • usr/bin/dcm_rm_element ment meant
  • usr/bin/dcm_rm_group ment meant
  • usr/bin/dcm_snoop ment meant
  • usr/bin/dcm_snoop tranport transport
  • usr/bin/dcm_snoop uniqe unique
  • usr/bin/dcm_strip_odd_groups ment meant
  • usr/bin/dcm_template ment meant
  • usr/bin/dcm_to_html ment meant
  • usr/bin/dcm_to_text ment meant
  • usr/bin/dcm_verify ment meant
  • usr/bin/dcm_vr_patterns ment meant
  • usr/bin/dcm_x_disp ment meant
  • usr/bin/dicom_echo Unexepected Unexpected
  • usr/bin/dicom_echo ment meant
  • usr/bin/dicom_echo pres press
  • usr/bin/dicom_echo tranport transport
  • usr/bin/dicom_echo uniqe unique
  • usr/bin/ex1_initiator ment meant
  • usr/bin/ex1_initiator tranport transport
  • usr/bin/ex1_initiator uniqe unique
  • usr/bin/ex2_initiator ment meant
  • usr/bin/ex2_initiator tranport transport
  • usr/bin/ex2_initiator uniqe unique
  • usr/bin/ex3_acceptor ment meant
  • usr/bin/ex3_acceptor tranport transport
  • usr/bin/ex3_acceptor uniqe unique
  • usr/bin/ex3_initiator ment meant
  • usr/bin/ex3_initiator tranport transport
  • usr/bin/ex3_initiator uniqe unique
  • usr/bin/ex4_acceptor ment meant
  • usr/bin/ex4_acceptor tranport transport
  • usr/bin/ex4_acceptor uniqe unique
  • usr/bin/ex4_initiator ment meant
  • usr/bin/ex4_initiator tranport transport
  • usr/bin/ex4_initiator uniqe unique
  • usr/bin/fillImageDB ment meant
  • usr/bin/fillRSA uniqe unique
  • usr/bin/fis_server Unexepected Unexpected
  • usr/bin/fis_server ment meant
  • usr/bin/fis_server tranport transport
  • usr/bin/fis_server uniqe unique
  • usr/bin/icon_append_file ment meant
  • usr/bin/icon_append_index ment meant
  • usr/bin/image_server Unexepected Unexpected
  • usr/bin/image_server ment meant
  • usr/bin/image_server tranport transport
  • usr/bin/image_server uniqe unique
  • usr/bin/mwlQuery Unexepected Unexpected
  • usr/bin/mwlQuery ment meant
  • usr/bin/mwlQuery tranport transport
  • usr/bin/mwlQuery uniqe unique
  • usr/bin/print_client Sofware Software
  • usr/bin/print_client Unexepected Unexpected
  • usr/bin/print_client ment meant
  • usr/bin/print_client pres press
  • usr/bin/print_client tranport transport
  • usr/bin/print_client uniqe unique
  • usr/bin/print_mgr Sofware Software
  • usr/bin/print_mgr Unexepected Unexpected
  • usr/bin/print_mgr ment meant
  • usr/bin/print_mgr pres press
  • usr/bin/print_mgr tranport transport
  • usr/bin/print_mgr uniqe unique
  • usr/bin/print_server Sofware Software
  • usr/bin/print_server Unexepected Unexpected
  • usr/bin/print_server ment meant
  • usr/bin/print_server tranport transport
  • usr/bin/print_server uniqe unique
  • usr/bin/print_server_display Sofware Software
  • usr/bin/print_server_display ment meant
  • usr/bin/print_server_display successfull successful
  • usr/bin/ris_gateway Unexepected Unexpected
  • usr/bin/ris_gateway ment meant
  • usr/bin/ris_gateway tranport transport
  • usr/bin/ris_gateway uniqe unique
  • usr/bin/send_image Unexepected Unexpected
  • usr/bin/send_image ment meant
  • usr/bin/send_image sensitve sensitive
  • usr/bin/send_image tranport transport
  • usr/bin/send_image uniqe unique
  • usr/bin/send_results Unexepected Unexpected
  • usr/bin/send_results ment meant
  • usr/bin/send_results tranport transport
  • usr/bin/send_results uniqe unique
  • usr/bin/send_study Unexepected Unexpected
  • usr/bin/send_study ment meant
  • usr/bin/send_study tranport transport
  • usr/bin/send_study uniqe unique
  • usr/bin/simple_pacs Unexepected Unexpected
  • usr/bin/simple_pacs ment meant
  • usr/bin/simple_pacs tranport transport
  • usr/bin/simple_pacs uniqe unique
  • usr/bin/simple_storage Unexepected Unexpected
  • usr/bin/simple_storage ment meant
  • usr/bin/simple_storage tranport transport
  • usr/bin/simple_storage uniqe unique
  • usr/bin/storage_classes tranport transport
  • usr/bin/storage_classes uniqe unique
  • usr/bin/storage_commit Unexepected Unexpected
  • usr/bin/storage_commit ment meant
  • usr/bin/storage_commit tranport transport
  • usr/bin/storage_commit uniqe unique

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://ctsim.org/download.html
• P file-contains-trailing-whitespace
  • debian/changelog (line 167)
  • debian/changelog (line 179)
  • debian/changelog (line 210)
  • debian/changelog (line 243)
  • debian/changelog (line 342)
  • debian/changelog (line 418)
  • debian/changelog (line 424)
  • debian/changelog (line 483)
  • debian/changelog (line 494)
  • debian/changelog (line 512)
  • debian/changelog (line 523)
  • debian/changelog (line 545)
  • debian/changelog (line 565)
  • debian/changelog (line 622)
  • debian/changelog (line 638)
  • debian/control (line 41)
  • debian/control (line 44)
  • debian/control (line 56)
• P package-uses-old-debhelper-compat-version
  • 10
• X upstream-metadata-file-is-missing

ctsim

• X binary-file-built-without-LFS-support
  • usr/bin/ctsim
  • usr/bin/ctsimtext

ctsim-doc

• W privacy-breach-generic
  • usr/share/doc/ctsim-doc/examples/simulate.html [<link rel="stylesheet" href="http://www.ctsim.org/main.css" type="text/css">] (http://www.ctsim.org/main.css)

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

cufflinks (2.2.1+dfsg.1-3+b1; non-free)

• X binary-file-built-without-LFS-support
  • usr/bin/compress_gtf
  • usr/bin/cuffcompare
  • usr/bin/cuffdiff
  • usr/bin/cufflinks
  • usr/bin/cuffnorm
  • usr/bin/cuffquant
  • usr/bin/gffread
  • usr/bin/gtf_to_sam
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I spelling-error-in-binary
  • usr/bin/cuffdiff constrasts contrasts
• I spelling-error-in-manpage
  • usr/share/man/man1/cuffdiff.1.gz constrasts contrasts

• W ancient-python-version-field
  • x-python-version 2.5
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 340)
  • debian/changelog (line 355)
  • debian/changelog (line 53)
  • debian/rules (line 1)
• P package-uses-old-debhelper-compat-version
  • 10
• P source-contains-empty-directory
  • doc/source/.templates/
• X upstream-metadata-file-is-missing

python-cvxopt (1.1.9+dfsg-3+b1; main)

• I hardening-no-fortify-functions
  • usr/lib/python2.7/dist-packages/cvxopt/base.i386-linux-gnu.so
  • usr/lib/python2.7/dist-packages/cvxopt/base.x86_64-linux-gnu.so
• I spelling-error-in-binary
  • usr/lib/python2.7/dist-packages/cvxopt/base.i386-linux-gnu.so prevously previously
  • usr/lib/python2.7/dist-packages/cvxopt/base.x86_64-linux-gnu.so prevously previously
  • usr/lib/python2.7/dist-packages/cvxopt/blas.i386-linux-gnu.so bandwith bandwidth
  • usr/lib/python2.7/dist-packages/cvxopt/blas.i386-linux-gnu.so vaule value
  • usr/lib/python2.7/dist-packages/cvxopt/blas.x86_64-linux-gnu.so bandwith bandwidth
  • usr/lib/python2.7/dist-packages/cvxopt/blas.x86_64-linux-gnu.so vaule value
  • usr/lib/python2.7/dist-packages/cvxopt/lapack.i386-linux-gnu.so postive positive
  • usr/lib/python2.7/dist-packages/cvxopt/lapack.x86_64-linux-gnu.so postive positive

python3-cvxopt (1.1.9+dfsg-3+b1; main)

• I spelling-error-in-binary
  • usr/lib/python3/dist-packages/cvxopt/blas.cpython-36m-i386-linux-gnu.so bandwith bandwidth
  • usr/lib/python3/dist-packages/cvxopt/blas.cpython-36m-i386-linux-gnu.so vaule value
  • usr/lib/python3/dist-packages/cvxopt/blas.cpython-36m-x86_64-linux-gnu.so bandwith bandwidth
  • usr/lib/python3/dist-packages/cvxopt/blas.cpython-36m-x86_64-linux-gnu.so vaule value
  • usr/lib/python3/dist-packages/cvxopt/blas.cpython-37m-i386-linux-gnu.so bandwith bandwidth
  • usr/lib/python3/dist-packages/cvxopt/blas.cpython-37m-i386-linux-gnu.so vaule value
  • usr/lib/python3/dist-packages/cvxopt/blas.cpython-37m-x86_64-linux-gnu.so bandwith bandwidth
  • usr/lib/python3/dist-packages/cvxopt/blas.cpython-37m-x86_64-linux-gnu.so vaule value
  • usr/lib/python3/dist-packages/cvxopt/lapack.cpython-36m-i386-linux-gnu.so postive positive
  • usr/lib/python3/dist-packages/cvxopt/lapack.cpython-36m-x86_64-linux-gnu.so postive positive
  • usr/lib/python3/dist-packages/cvxopt/lapack.cpython-37m-i386-linux-gnu.so postive positive
  • usr/lib/python3/dist-packages/cvxopt/lapack.cpython-37m-x86_64-linux-gnu.so postive positive

• P file-contains-trailing-whitespace
  • debian/changelog (line 837)
• O missing-license-paragraph-in-dep5-copyright
  • gpl-3+ (paragraph at line 7)
• O missing-license-text-in-dep5-copyright
  • GPL-3+ (paragraph at line 18)
• P package-lacks-versioned-build-depends-on-debhelper
  • 9
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• P insane-line-length-in-source-file
  • JSZip/jszip.js line length is 769 characters (>512)
• P source-contains-browserified-javascript
  • JSZip/jszip.js code fragment:if("object"==typeof exports&&"undefined"!=typeof module)module.exports=e();else if("fu
• P source-contains-prebuilt-javascript-object
  • AutoFill/js/autoFill.bootstrap.min.js
  • AutoFill/js/autoFill.foundation.min.js
  • AutoFill/js/autoFill.jqueryui.min.js
  • AutoFill/js/dataTables.autoFill.min.js
  • Buttons/js/buttons.bootstrap.min.js
  • Buttons/js/buttons.colVis.min.js
  • Buttons/js/buttons.foundation.min.js
  • Buttons/js/buttons.html5.min.js
  • Buttons/js/buttons.jqueryui.min.js
  • Buttons/js/buttons.print.min.js
  • Buttons/js/dataTables.buttons.min.js
  • ColReorder/js/dataTables.colReorder.min.js
  • FixedColumns/js/dataTables.fixedColumns.min.js
  • FixedHeader/js/dataTables.fixedHeader.min.js
  • JSZip/jszip.js line length is 769 characters (>512)
  • JSZip/jszip.min.js
  • KeyTable/js/dataTables.keyTable.min.js
  • Responsive/js/dataTables.responsive.min.js
  • RowReorder/js/dataTables.rowReorder.min.js
  • Scroller/js/dataTables.scroller.min.js
  • Select/js/dataTables.select.min.js
  • pdfmake/build/pdfmake.min.js
• O source-is-missing
  • JSZip/jszip.js line length is 769 characters (>512)
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

• I debian-rules-contains-unnecessary-get-orig-source-target
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://dicom.offis.de/pub/dicom/offis/software/dcmtk/current/dcmtk-(.*)\.tar\.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 22)
  • debian/changelog (line 23)
  • debian/changelog (line 24)
  • debian/changelog (line 693)
  • debian/rules (line 10)
  • debian/rules (line 67)
  • debian/rules (line 68)
  • debian/rules (line 78)
• I out-of-date-standards-version
  • 4.1.5 (released 2018-07-04) (current is 4.3.0)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing
• I wildcard-matches-nothing-in-dep5-copyright
  • dcmsr/include/dcmtk/dcmsr/cmr/dsrdnflt.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/dsritcsr.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/dsritcsr.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/dsrprdcc.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/tid1409m.h (paragraph at line 399)
  • dcmsr/libcmr/dsrdnflt.cc (paragraph at line 399)
  • dcmsr/libcmr/dsritcsr.cc (paragraph at line 399)
  • dcmsr/libcmr/dsritcsr.cc (paragraph at line 399)
  • dcmsr/libcmr/dsrprdcc.cc (paragraph at line 399)
  • dcmsr/libcmr/tid1409m.cc (paragraph at line 399)
  • dcmsr/libcmr/tid300cc.cc (paragraph at line 399)

dcmtk

• X binary-file-built-without-LFS-support
  • usr/bin/dcm2pdf
  • usr/bin/dcm2pnm
  • usr/bin/dcmftest
  • usr/bin/dcmj2pnm
  • usr/bin/dcml2pnm
  • usr/bin/dcmmklut
  • usr/bin/dcmp2pgm
  • usr/bin/dcmprscp
  • usr/bin/dcmprscu
  • usr/bin/dcmpsprt
  • usr/bin/dcmpsrcv
  • usr/bin/dcmpssnd
  • usr/bin/dcmsign
  • usr/bin/dump2dcm
  • usr/bin/storescp
  • usr/bin/xml2dcm
• I hardening-no-fortify-functions
  • usr/bin/dcmftest
  • usr/bin/dump2dcm
• I spelling-error-in-binary
  • usr/bin/dcmcjpls threshhold threshold
  • usr/bin/dcmodify occurences occurrences
  • usr/bin/dcmprscu occured occurred
  • usr/bin/dcmpsmk additonal additional
  • usr/bin/dcmpsprt pres press
  • usr/bin/storescu pres press
• I spelling-error-in-manpage
  • usr/share/man/man1/dcmcjpeg.1.gz truely truly
  • usr/share/man/man1/dcmcjpls.1.gz threshhold threshold
  • usr/share/man/man1/dcmcjpls.1.gz threshhold threshold
  • usr/share/man/man1/dcmcjpls.1.gz threshhold threshold
  • usr/share/man/man1/dcmp2pgm.1.gz allows to allows one to
  • usr/share/man/man1/dcmprscp.1.gz allows to allows one to
  • usr/share/man/man1/dcmpsmk.1.gz allow to allow one to

dcmtk-doc

• X duplicate-files
  • usr/share/doc/dcmtk-doc/html/search/all_1b.js usr/share/doc/dcmtk-doc/html/search/functions_1a.js

libdcmtk14

• X binary-file-built-without-LFS-support
  • usr/lib/i386-linux-gnu/libdcmdata.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmimgle.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmnet.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmpstat.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmqrdb.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmwlm.so.14.3.6.4
  • usr/lib/i386-linux-gnu/liboflog.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libofstd.so.14.3.6.4
• O embedded-library
  • usr/lib/i386-linux-gnu/libijg12.so.14.3.6.4: libjpeg
  • usr/lib/i386-linux-gnu/libijg16.so.14.3.6.4: libjpeg
  • usr/lib/i386-linux-gnu/libijg8.so.14.3.6.4: libjpeg
  • usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4: libjpeg
  • usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4: libjpeg
  • usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4: libjpeg
• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmtls.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4
• O no-symbols-control-file
  • usr/lib/i386-linux-gnu/libcmr.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmdata.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmfg.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmimage.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmimgle.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmiod.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmjpeg.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmjpls.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmnet.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmpmap.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmpstat.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmqrdb.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmrt.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmseg.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmsr.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmtls.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmtract.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmwlm.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libi2d.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/i386-linux-gnu/liboflog.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libofstd.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4
• O package-name-doesnt-match-sonames
  • libcmr14 libdcmdata14 libdcmdsig14 libdcmfg14 libdcmimage14 libdcmimgle14 libdcmiod14 libdcmjpeg14 libdcmjpls14 libdcmnet14 libdcmpmap14 libdcmpstat14 libdcmqrdb14 libdcmrt14 libdcmseg14 libdcmsr14 libdcmtls14 libdcmtract14 libdcmwlm14 libi2d14 libijg12-14 libijg16-14 libijg8-14 liboflog14 libofstd14
• X shlib-calls-exit
  • usr/lib/i386-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libofstd.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4
• I spelling-error-in-binary
  • usr/lib/i386-linux-gnu/libdcmnet.so.14.3.6.4 pres press
  • usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 AfE Safe
  • usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 pres press

• W debhelper-but-no-misc-depends
  • gis-tasks
• P file-contains-trailing-whitespace
  • debian/control (line 485)
• P package-lacks-versioned-build-depends-on-debhelper
  • 7
• W package-uses-deprecated-debhelper-compat-version
  • 7
• O testsuite-autopkgtest-missing

• W changelog-should-mention-nmu
• W debhelper-but-no-misc-depends
  • junior-tasks
• P file-contains-trailing-whitespace
  • debian/changelog (line 38)
  • debian/changelog (line 39)
  • debian/control (line 512)
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)
• W source-nmu-has-incorrect-version-number
  • 1.28
• I testsuite-autopkgtest-missing

junior-art

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. Art"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-config

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. Project common package"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/
• P maintainer-script-without-set-e
  • config
  • postinst
• I unused-debconf-template
  • shared/junior-config/usermenus

junior-education

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. education applications"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-games-adventure

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. Adventure Games"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-games-arcade

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. arcade games"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-games-card

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. Card Games"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-games-gl

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. 3D Games (hardware acceleration required)"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-games-net

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. Network Games"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-games-puzzle

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. Puzzle games"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-games-sim

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. Simulation Games"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-games-text

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. Text Games"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-internet

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. Internet tools"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-math

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. educational math"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-programming

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. programming"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-sound

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. sound"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-system

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. System tools"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-tasks

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. tasks for tasksel"
• I extended-description-is-probably-too-short
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-toys

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. desktop toys"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-typing

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. typing"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-video

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. Video"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

junior-writing

• I description-synopsis-might-not-be-phrased-properly
  • "Debian Jr. writing"
• P homepage-field-uses-insecure-uri
  • http://blends.debian.org/junior/tasks/

• P file-contains-trailing-whitespace
  • debian/changelog (line 10)
  • debian/changelog (line 126)
  • debian/changelog (line 127)
  • debian/changelog (line 165)
  • debian/changelog (line 166)
  • debian/changelog (line 195)
  • debian/changelog (line 196)
  • debian/changelog (line 313)
  • debian/changelog (line 314)
  • debian/changelog (line 387)
  • debian/changelog (line 388)
  • debian/changelog (line 612)
  • debian/changelog (line 663)
  • debian/changelog (line 872)
  • debian/changelog (line 9)
  • debian/changelog (line 907)
  • debian/changelog (line 924)
  • debian/changelog (line 953)
  • debian/changelog (line 967)
  • debian/control (line 1761)
• P no-dep5-copyright
• I testsuite-autopkgtest-missing

med-config

• P maintainer-script-without-set-e
  • config
  • postinst
• I unused-debconf-template
  • shared/med-config/usermenus

med-epi

• O description-possibly-contains-homepage
  • http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf

med-tasks

• O description-possibly-contains-homepage
  • https://blends.debian.org/med/tasks/

• P duplicate-in-relation-field
  • in science-viewing-dev recommends: python3-qwt, python3-qwt | python-qwt
• P file-contains-trailing-whitespace
  • debian/changelog (line 1059)
  • debian/changelog (line 1060)
  • debian/changelog (line 13)
  • debian/changelog (line 14)
  • debian/changelog (line 241)
  • debian/changelog (line 242)
  • debian/changelog (line 345)
  • debian/changelog (line 356)
  • debian/changelog (line 358)
  • debian/changelog (line 359)
  • debian/changelog (line 617)
  • debian/changelog (line 618)
  • debian/changelog (line 920)
  • debian/changelog (line 921)
  • debian/control (line 2848)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

science-config

• P maintainer-script-without-set-e
  • config
  • postinst
• I unused-debconf-template
  • shared/science-config/usermenus

• W debhelper-but-no-misc-depends
  • debichem-analytical-biochemistry
  • debichem-cheminformatics
  • debichem-crystallography
  • debichem-development
  • debichem-input-generation-output-processing
  • debichem-modelling
  • debichem-molecular-abinitio
  • debichem-molecular-dynamics
  • debichem-periodic-abinitio
  • debichem-semiempirical
  • debichem-tasks
  • debichem-view-edit-2d
  • debichem-visualisation
• P file-contains-trailing-whitespace
  • debian/control (line 213)
  • debian/control (line 245)
• P homepage-field-uses-insecure-uri
  • http://alioth.debian.org/projects/debichem
• P no-dep5-copyright
• P package-lacks-versioned-build-depends-on-debhelper
  • 9
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• I vcs-field-not-canonical
  • http://svn.debian.org/wsvn/blends/projects/debichem/trunk/debichem/ https://anonscm.debian.org/viewvc/blends/projects/debichem/trunk/debichem/
  • svn://svn.debian.org/blends/projects/debichem/trunk/debichem/ svn://anonscm.debian.org/blends/projects/debichem/trunk/debichem/
• I vcs-field-uses-insecure-uri
  • vcs-browser http://svn.debian.org/wsvn/blends/projects/debichem/trunk/debichem/
  • vcs-svn svn://svn.debian.org/blends/projects/debichem/trunk/debichem/
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser http://svn.debian.org/wsvn/blends/projects/debichem/trunk/debichem/
  • vcs-svn svn://svn.debian.org/blends/projects/debichem/trunk/debichem/

debichem-modelling

• W command-with-path-in-maintainer-script
  • prerm:20 /usr/sbin/blend-update-usermenus
• P homepage-field-uses-insecure-uri
  • http://alioth.debian.org/projects/debichem
• W priority-extra-is-replaced-by-priority-optional

• W debhelper-but-no-misc-depends
  • debichem-tasks
• P file-contains-trailing-whitespace
  • debian/control (line 225)
  • debian/control (line 258)
  • debian/control (line 55)
• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem
• P no-dep5-copyright
• P package-lacks-versioned-build-depends-on-debhelper
  • 9
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing

debichem-analytical-biochemistry

• E description-is-pkg-name
  • DebiChem Analytical BioChemistry
• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem
• W possible-unindented-list-in-extended-description
• I using-first-person-in-description
  • line 6: mine

debichem-cheminformatics

• E description-is-pkg-name
  • DebiChem Cheminformatics
• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-crystallography

• E description-is-pkg-name
  • DebiChem crystallography
• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-development

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-input-generation-output-processing

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-molecular-abinitio

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-molecular-dynamics

• E description-is-pkg-name
  • DebiChem Molecular Dynamics
• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-molecular-modelling

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-periodic-abinitio

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-semiempirical

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-tasks

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-view-edit-2d

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

debichem-visualisation

• P homepage-field-uses-insecure-uri
  • http://salsa.debian.org/blends-team/debichem

• X debian-watch-does-not-check-gpg-signature
• P source-contains-prebuilt-binary
  • r9/training/realign

deepnano

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python) [amd64, i386]

• I testsuite-autopkgtest-missing

dh-r

• W binary-without-manpage
  • usr/bin/dh_vignette
  • usr/bin/prepare_missing_cran_package
• W script-not-executable
  • usr/share/dh-r/r-cran.mk

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://dialign.gobics.de/download/dialign-(.*)-linux\.i586\.tar\.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 148)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

dialign

• X binary-file-built-without-LFS-support
  • usr/bin/dialign2-2
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/LGPL

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://dialign-tx.gobics.de/download
• X maybe-not-arch-all-binnmuable
  • dialign-tx -> dialign-tx-data
• P source-contains-empty-directory
  • bin/

dialign-tx

• X binary-file-built-without-LFS-support
  • usr/bin/dialign-tx [amd64, i386]
• W spelling-error-in-readme-debian
  • acces access [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)
• I testsuite-autopkgtest-missing

diamond-aligner

• I spelling-error-in-binary
  • usr/lib/debian-med/bin/diamond characte character

• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 10)
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.dclunie.com/dicom3tools/workinprogress/
• P file-contains-trailing-whitespace
  • debian/changelog (line 3)
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

dicom3tools

• I hardening-no-bindnow
  • usr/bin/andump [amd64, i386]
  • usr/bin/dcdirdmp [amd64, i386]
  • usr/bin/dcdump [amd64, i386]
  • usr/bin/dcentvfy [amd64, i386]
  • usr/bin/dcfile [amd64, i386]
  • usr/bin/dchist [amd64, i386]
  • usr/bin/dciodvfy [amd64, i386]
  • usr/bin/dckey [amd64, i386]
  • usr/bin/dcposn [amd64, i386]
  • usr/bin/dcsort [amd64, i386]
  • usr/bin/dcsrdump [amd64, i386]
  • usr/bin/dcstats [amd64, i386]
  • usr/bin/dctable [amd64, i386]
  • usr/bin/dctopgm8 [amd64, i386]
  • usr/bin/dctopgx [amd64, i386]
  • usr/bin/dctopnm [amd64, i386]
  • usr/bin/jpegdump [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/andump [amd64, i386]
  • usr/bin/dcdirdmp [amd64, i386]
  • usr/bin/dcdump [amd64, i386]
  • usr/bin/dcentvfy [amd64, i386]
  • usr/bin/dcfile [amd64, i386]
  • usr/bin/dchist [amd64, i386]
  • usr/bin/dciodvfy [amd64, i386]
  • usr/bin/dckey [amd64, i386]
  • usr/bin/dcposn [amd64, i386]
  • usr/bin/dcsort [amd64, i386]
  • usr/bin/dcsrdump [amd64, i386]
  • usr/bin/dcstats [amd64, i386]
  • usr/bin/dctable [amd64, i386]
  • usr/bin/dctopgm8 [amd64, i386]
  • usr/bin/dctopgx [amd64, i386]
  • usr/bin/dctopnm [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/andump Dependant Dependent [amd64, i386]
  • usr/bin/andump Unkown Unknown [amd64, i386]
  • usr/bin/dcdirdmp Dependant Dependent [amd64, i386]
  • usr/bin/dcdirdmp Unkown Unknown [amd64, i386]
  • usr/bin/dcdirdmp convertor converter [amd64, i386]
  • usr/bin/dcdump Dependant Dependent [amd64, i386]
  • usr/bin/dcdump Unkown Unknown [amd64, i386]
  • usr/bin/dcdump convertor converter [amd64, i386]
  • usr/bin/dcentvfy AMMENDMENT AMENDMENT [amd64, i386]
  • usr/bin/dcentvfy Dependant Dependent [amd64, i386]
  • usr/bin/dcentvfy Unkown Unknown [amd64, i386]
  • usr/bin/dcentvfy convertor converter [amd64, i386]
  • usr/bin/dcfile Dependant Dependent [amd64, i386]
  • usr/bin/dcfile Unkown Unknown [amd64, i386]
  • usr/bin/dchist Dependant Dependent [amd64, i386]
  • usr/bin/dchist Unkown Unknown [amd64, i386]
  • usr/bin/dchist convertor converter [amd64, i386]
  • usr/bin/dciodvfy AMMENDMENT AMENDMENT [amd64, i386]
  • usr/bin/dciodvfy Dependant Dependent [amd64, i386]
  • usr/bin/dciodvfy Unkown Unknown [amd64, i386]
  • usr/bin/dciodvfy convertor converter [amd64, i386]
  • usr/bin/dckey Dependant Dependent [amd64, i386]
  • usr/bin/dckey Unkown Unknown [amd64, i386]
  • usr/bin/dckey convertor converter [amd64, i386]
  • usr/bin/dcposn Dependant Dependent [amd64, i386]
  • usr/bin/dcposn Unkown Unknown [amd64, i386]
  • usr/bin/dcposn convertor converter [amd64, i386]
  • usr/bin/dcsort Dependant Dependent [amd64, i386]
  • usr/bin/dcsort Unkown Unknown [amd64, i386]
  • usr/bin/dcsort convertor converter [amd64, i386]
  • usr/bin/dcsrdump Dependant Dependent [amd64, i386]
  • usr/bin/dcsrdump Unkown Unknown [amd64, i386]
  • usr/bin/dcsrdump convertor converter [amd64, i386]
  • usr/bin/dcstats Dependant Dependent [amd64, i386]
  • usr/bin/dcstats Unkown Unknown [amd64, i386]
  • usr/bin/dcstats convertor converter [amd64, i386]
  • usr/bin/dctable Dependant Dependent [amd64, i386]
  • usr/bin/dctable Unkown Unknown [amd64, i386]
  • usr/bin/dctable convertor converter [amd64, i386]
  • usr/bin/dctopgm8 Dependant Dependent [amd64, i386]
  • usr/bin/dctopgm8 Unkown Unknown [amd64, i386]
  • usr/bin/dctopgm8 convertor converter [amd64, i386]
  • usr/bin/dctopgx Dependant Dependent [amd64, i386]
  • usr/bin/dctopgx Unkown Unknown [amd64, i386]
  • usr/bin/dctopgx convertor converter [amd64, i386]
  • usr/bin/dctopnm Dependant Dependent [amd64, i386]
  • usr/bin/dctopnm Unkown Unknown [amd64, i386]
  • usr/bin/dctopnm convertor converter [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/dcsrdump.1.gz Preceed Precede [amd64, i386]
  • usr/share/man/man1/dctopgm8.1.gz supresses suppresses [amd64, i386]
  • usr/share/man/man1/dctopgm8.1.gz supresses suppresses [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

dicompyler

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/dicompyler.desktop
• O extra-license-file
  • usr/share/dicompyler/dicompyler/license.txt
• O package-contains-documentation-outside-usr-share-doc
  • usr/share/dicompyler/dicompyler/license.txt

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://dicom.offis.de/pub/dicom/offis/software/dscope/dscope([\d]+)/dsgui(\d)(\d)(\d)\.zip
• P file-contains-trailing-whitespace
  • debian/changelog (line 8)
  • debian/rules (line 5)
  • debian/rules (line 65)
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)
• I testsuite-autopkgtest-missing

dicomscope

• W bad-jar-name
  • usr/share/java/DICOMscope-3.6.0.jar

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 7)
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 1.01-wu1-3+dfsg
• P source-contains-empty-directory
  • samtools/
• I testsuite-autopkgtest-missing

dindel (1.01-wu1-3+dfsg-1+b1; main)

• I spelling-error-in-binary
  • usr/bin/dindel auxilary auxiliary [amd64, i386]
  • usr/bin/dindel libary library [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/dindel.1.gz auxilary auxiliary [amd64, i386]
  • usr/share/man/man1/dindel.1.gz auxilary auxiliary [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 88)
• P source-contains-empty-directory
  • thirdparty/gatb-core/

discosnp

• I hardening-no-bindnow
  • usr/bin/kissnp2 [amd64, i386]
  • usr/bin/kissreads2 [amd64, i386]
  • usr/lib/discosnp/bin/quick_hierarchical_clustering [amd64, i386]
  • usr/lib/discosnp/bin/read_file_names [amd64, i386]
• O package-contains-documentation-outside-usr-share-doc
  • usr/share/discosnp/scripts_RAD/README.md [amd64, i386]
• I possible-documentation-but-no-doc-base-registration
• O script-with-language-extension
  • usr/bin/run_discoSnp++.sh [amd64, i386]
  • usr/bin/run_discoSnpRad.sh [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://rostlab.org/disulfinder/disulfinder-([0-9.]+)\.tar\.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 37)
  • debian/changelog (line 38)
  • debian/changelog (line 40)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • disulfind/Fasta/
  • disulfind/Logs/
  • disulfind/Predictions/All/
  • disulfind/Predictions/Answers/
  • disulfind/Predictions/Bondstate/BRNN/
  • disulfind/Predictions/Bondstate/Viterbi/
  • disulfind/Predictions/Connectivity/
  • disulfind/Predictions/LogStats/
  • disulfind/Predictions/Outputs/
  • disulfind/Predictions/Pssm/
  • disulfind/Predictions/Queries/
  • disulfind/bin/
  • disulfind/src/tmp/
  • disulfind/tmp/

disulfinder

• X binary-file-built-without-LFS-support
  • usr/bin/disulfinder [amd64, i386]
• I package-contains-empty-directory
  • usr/share/disulfinder/ [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 27)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

dnaclust (3-6+b1; main)

• W binary-without-manpage
  • usr/bin/dnaclust-abun [amd64, i386]
  • usr/bin/dnaclust-ref [amd64, i386]
  • usr/bin/find-large-clusters [amd64, i386]
  • usr/bin/generate_test_clusters [amd64, i386]
  • usr/bin/star-align [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/dnaclust [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/dnaclust/fastaselect seperate separate [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-([0-9.]+)\.t[bgx]z

dssp (3.0.0-3+b1; main)

• I hardening-no-bindnow
  • usr/bin/mkdssp [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/mkdssp [amd64, i386]

• X debian-watch-does-not-check-gpg-signature

e-mem

• I hardening-no-fortify-functions
  • usr/bin/e-mem [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

ea-utils

• X binary-file-built-without-LFS-support
  • usr/bin/fastq-clipper [amd64, i386]
  • usr/bin/fastq-mcf [amd64, i386]
  • usr/bin/fastq-stats [amd64, i386]
  • usr/bin/sam-stats [amd64, i386]
  • usr/bin/varcall [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/fastq-clipper [amd64, i386]
  • usr/bin/fastq-join [amd64, i386]
  • usr/bin/fastq-mcf [amd64, i386]
  • usr/bin/fastq-multx [amd64, i386]
  • usr/bin/fastq-stats [amd64, i386]
  • usr/bin/varcall [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/fastq-mcf occurance occurrence [amd64, i386]
  • usr/bin/fastq-multx occuring occurring [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/fastq-mcf.1.gz occurance occurrence [amd64, i386]
  • usr/share/man/man1/fastq-multx.1.gz occuring occurring [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

ecopcr

• X binary-file-built-without-LFS-support
  • usr/bin/ecoPCR [amd64, i386]
  • usr/bin/ecofind [amd64, i386]
  • usr/bin/ecogrep [amd64, i386]
  • usr/bin/ecoisundertaxon [amd64, i386]
• W binary-without-manpage
  • usr/bin/ecoPCRFilter [amd64, i386]
  • usr/bin/ecoSort [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/ecoPCR [amd64, i386]
  • usr/bin/ecofind [amd64, i386]
  • usr/bin/ecogrep [amd64, i386]
  • usr/bin/ecoisundertaxon [amd64, i386]
• I spelling-error-in-copyright
  • therefor therefore [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

edfbrowser

• X binary-file-built-without-LFS-support
  • usr/bin/edfbrowser
• O spelling-error-in-binary
  • usr/bin/edfbrowser endianess endianness
  • usr/bin/edfbrowser whitH with

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libedf1

• I symbols-file-missing-build-depends-package-field

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 10)
• I testsuite-autopkgtest-missing

edtsurf

• X binary-file-built-without-LFS-support
  • usr/bin/EDTSurf

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 16)

eigensoft

• X binary-file-built-without-LFS-support
  • usr/bin/baseprog [amd64, i386]
  • usr/bin/convertf [amd64, i386]
  • usr/bin/eigenstrat [amd64, i386]
  • usr/bin/eigenstratQTL [amd64, i386]
  • usr/bin/mergeit [amd64, i386]
  • usr/bin/pca [amd64, i386]
  • usr/bin/pcatoy [amd64, i386]
  • usr/bin/smartrel [amd64, i386]
  • usr/bin/smshrink [amd64, i386]
  • usr/bin/twstats [amd64, i386]
  • usr/lib/eigensoft/smarteigenstrat [amd64, i386]
  • usr/lib/eigensoft/smartpca [amd64, i386]
• W binary-without-manpage
  • usr/bin/baseprog [amd64, i386]
  • usr/bin/convertf [amd64, i386]
  • usr/bin/eigenstrat [amd64, i386]
  • usr/bin/eigenstratQTL [amd64, i386]
  • usr/bin/evec2pca [amd64, i386]
  • usr/bin/evec2pca-ped [amd64, i386]
  • usr/bin/gc-eigensoft [amd64, i386]
  • usr/bin/mergeit [amd64, i386]
  • usr/bin/pca [amd64, i386]
  • usr/bin/pcatoy [amd64, i386]
  • usr/bin/smartpca [amd64, i386]
  • usr/bin/smartrel [amd64, i386]
  • usr/bin/smshrink [amd64, i386]
  • usr/bin/twstats [amd64, i386]
• X duplicate-files
  • usr/share/doc/eigensoft/examples/CONVERTF/example.eigenstratgeno usr/share/doc/eigensoft/examples/EIGENSTRAT/example.geno usr/share/doc/eigensoft/examples/POPGEN/example.geno [amd64, i386]
  • usr/share/doc/eigensoft/examples/CONVERTF/example.ind.packedancestrymap usr/share/doc/eigensoft/examples/EIGENSTRAT/example.ind usr/share/doc/eigensoft/examples/POPGEN/example.ind [amd64, i386]
  • usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymap usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymapgeno [amd64, i386]
  • usr/share/doc/eigensoft/examples/CONVERTF/example.pheno usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pheno [amd64, i386]
  • usr/share/doc/eigensoft/examples/CONVERTF/example.snp usr/share/doc/eigensoft/examples/CONVERTF/example.snp.packedancestrymap usr/share/doc/eigensoft/examples/EIGENSTRAT/example.snp usr/share/doc/eigensoft/examples/POPGEN/example.snp [amd64, i386]
  • usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq [amd64, i386]
  • usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq.GC usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq.GC [amd64, i386]
  • usr/share/doc/eigensoft/examples/EIGENSTRAT/example.eval usr/share/doc/eigensoft/examples/POPGEN/example.eval [amd64, i386]
  • usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca usr/share/doc/eigensoft/examples/POPGEN/example.pca [amd64, i386]
  • usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca.evec usr/share/doc/eigensoft/examples/POPGEN/example.evec [amd64, i386]
• P example-unusual-interpreter
  • usr/share/doc/eigensoft/examples/POPGEN/HGDP.X.perl #!/usr/bin [amd64, i386]
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/eigensoft/CONVERTF/README [amd64, i386]
  • usr/share/eigensoft/EIGENSTRAT/README [amd64, i386]
  • usr/share/eigensoft/POPGEN/README [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/smshrink beween between [amd64, i386]
  • usr/lib/eigensoft/smartpca beween between [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-(.*)\.tar\.gz
• X deprecated-configure-filename
• P source-contains-cvs-control-dir
  • emboss_doc/html/CVS
  • emboss_doc/text/CVS
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

embassy-domainatrix

• O binary-or-shlib-defines-rpath
  • usr/bin/cathparse /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainnr /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainreso /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainseqs /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainsse /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/scopparse /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/ssematch /usr/lib/emboss/lib [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-(.*)\.tar\.gz
• X deprecated-configure-filename
• P file-contains-trailing-whitespace
  • debian/changelog (line 48)
• P source-contains-cvs-control-dir
  • emboss_doc/html/CVS
  • emboss_doc/text/CVS
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

embassy-domalign

• O binary-or-shlib-defines-rpath
  • usr/bin/allversusall /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainalign /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/domainrep /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/seqalign /usr/lib/emboss/lib [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-(.*).tar.gz
• X deprecated-configure-filename
• P source-contains-cvs-control-dir
  • emboss_doc/html/CVS
  • emboss_doc/text/CVS
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

embassy-domsearch

• O binary-or-shlib-defines-rpath
  • usr/bin/seqfraggle /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/seqnr /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/seqsearch /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/seqsort /usr/lib/emboss/lib [amd64, i386]
  • usr/bin/seqwords /usr/lib/emboss/lib [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-(.*).tar.gz
• X deprecated-configure-filename
• P source-contains-cvs-control-dir
  • emboss_doc/html/CVS
  • emboss_doc/text/CVS
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing
• I wildcard-matches-nothing-in-dep5-copyright
  • emboss-doc/* (paragraph at line 22)

embassy-phylip

• O binary-or-shlib-defines-rpath
  • usr/bin/fclique /usr/lib/emboss/lib
  • usr/bin/fconsense /usr/lib/emboss/lib
  • usr/bin/fcontml /usr/lib/emboss/lib
  • usr/bin/fcontrast /usr/lib/emboss/lib
  • usr/bin/fdiscboot /usr/lib/emboss/lib
  • usr/bin/fdnacomp /usr/lib/emboss/lib
  • usr/bin/fdnadist /usr/lib/emboss/lib
  • usr/bin/fdnainvar /usr/lib/emboss/lib
  • usr/bin/fdnaml /usr/lib/emboss/lib
  • usr/bin/fdnamlk /usr/lib/emboss/lib
  • usr/bin/fdnamove /usr/lib/emboss/lib
  • usr/bin/fdnapars /usr/lib/emboss/lib
  • usr/bin/fdnapenny /usr/lib/emboss/lib
  • usr/bin/fdollop /usr/lib/emboss/lib
  • usr/bin/fdolmove /usr/lib/emboss/lib
  • usr/bin/fdolpenny /usr/lib/emboss/lib
  • usr/bin/fdrawgram /usr/lib/emboss/lib
  • usr/bin/fdrawtree /usr/lib/emboss/lib
  • usr/bin/ffactor /usr/lib/emboss/lib
  • usr/bin/ffitch /usr/lib/emboss/lib
  • usr/bin/ffreqboot /usr/lib/emboss/lib
  • usr/bin/fgendist /usr/lib/emboss/lib
  • usr/bin/fkitsch /usr/lib/emboss/lib
  • usr/bin/fmix /usr/lib/emboss/lib
  • usr/bin/fmove /usr/lib/emboss/lib
  • usr/bin/fneighbor /usr/lib/emboss/lib
  • usr/bin/fpars /usr/lib/emboss/lib
  • usr/bin/fpenny /usr/lib/emboss/lib
  • usr/bin/fproml /usr/lib/emboss/lib
  • usr/bin/fpromlk /usr/lib/emboss/lib
  • usr/bin/fprotdist /usr/lib/emboss/lib
  • usr/bin/fprotpars /usr/lib/emboss/lib
  • usr/bin/frestboot /usr/lib/emboss/lib
  • usr/bin/frestdist /usr/lib/emboss/lib
  • usr/bin/frestml /usr/lib/emboss/lib
  • usr/bin/fretree /usr/lib/emboss/lib
  • usr/bin/fseqboot /usr/lib/emboss/lib
  • usr/bin/fseqbootall /usr/lib/emboss/lib
  • usr/bin/ftreedist /usr/lib/emboss/lib
  • usr/bin/ftreedistpair /usr/lib/emboss/lib
• I hardening-no-bindnow
  • usr/bin/fclique
  • usr/bin/fconsense
  • usr/bin/fcontml
  • usr/bin/fcontrast
  • usr/bin/fdiscboot
  • usr/bin/fdnacomp
  • usr/bin/fdnadist
  • usr/bin/fdnainvar
  • usr/bin/fdnaml
  • usr/bin/fdnamlk
  • usr/bin/fdnamove
  • usr/bin/fdnapars
  • usr/bin/fdnapenny
  • usr/bin/fdollop
  • usr/bin/fdolmove
  • usr/bin/fdolpenny
  • usr/bin/fdrawgram
  • usr/bin/fdrawtree
  • usr/bin/ffactor
  • usr/bin/ffitch
  • usr/bin/ffreqboot
  • usr/bin/fgendist
  • usr/bin/fkitsch
  • usr/bin/fmix
  • usr/bin/fmove
  • usr/bin/fneighbor
  • usr/bin/fpars
  • usr/bin/fpenny
  • usr/bin/fproml
  • usr/bin/fpromlk
  • usr/bin/fprotdist
  • usr/bin/fprotpars
  • usr/bin/frestboot
  • usr/bin/frestdist
  • usr/bin/frestml
  • usr/bin/fretree
  • usr/bin/fseqboot
  • usr/bin/fseqbootall
  • usr/bin/ftreedist
  • usr/bin/ftreedistpair
• I spelling-error-in-manpage
  • usr/share/man/man1/fdnamove.1e.gz Arbitary Arbitrary
  • usr/share/man/man1/fdolmove.1e.gz Arbitary Arbitrary
  • usr/share/man/man1/fmove.1e.gz Arbitary Arbitrary
  • usr/share/man/man1/fretree.1e.gz Arbitary Arbitrary
• I unused-override
  • copyright-should-refer-to-common-license-file-for-gpl

• W debian-rules-should-not-use-custom-compression-settings
  • dh_builddeb -- -Z xz (line 129)
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-([\d.]*)\.tar\.gz
• X deprecated-configure-filename
• P file-contains-trailing-whitespace
  • debian/changelog (line 302)
  • debian/changelog (line 382)
  • debian/changelog (line 603)
  • debian/changelog (line 641)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P license-problem-gfdl-non-official-text
  • debian/copyright invariant part is: with no invariant sections, with no front-cover texts, and with no back-cover texts
• X maybe-not-arch-all-binnmuable
  • emboss -> emboss-data
• I out-of-date-standards-version
  • 4.1.5 (released 2018-07-04) (current is 4.3.0)
• P package-does-not-install-examples
  • jemboss/contrib/jaligner/examples/
• P source-contains-prebuilt-java-object
  • jemboss/contrib/jaligner/jaligner.jar
  • jemboss/lib/JembossPrintAlignment.jar
  • jemboss/lib/activation.jar
  • jemboss/lib/axis/axis-ant.jar
  • jemboss/lib/axis/axis.jar
  • jemboss/lib/axis/commons-discovery.jar
  • jemboss/lib/axis/commons-logging.jar
  • jemboss/lib/axis/jaxrpc.jar
  • jemboss/lib/axis/log4j-1.2.8.jar
  • jemboss/lib/axis/saaj.jar
  • jemboss/lib/axis/servlet.jar
  • jemboss/lib/axis/wsdl4j.jar
  • jemboss/lib/jakarta-regexp-1.2.jar
  • jemboss/lib/jalviewApplet.jar
  • jemboss/lib/jemboss.jar
  • jemboss/lib/mail.jar
  • jemboss/lib/xerces.jar

emboss (6.6.0+dfsg-7+b1; main)

• X binary-file-built-without-LFS-support
  • usr/lib/emboss/edialign
  • usr/lib/emboss/jembossctl
• W binary-without-manpage
  • usr/bin/acdgalaxy [amd64, i386]
  • usr/bin/assemblyget [amd64, i386]
  • usr/bin/embossupdate [amd64, i386]
  • usr/bin/featmerge [amd64, i386]
  • usr/bin/infoassembly [amd64, i386]
  • usr/bin/jembossctl [amd64, i386]
  • usr/bin/refseqget [amd64, i386]
  • usr/bin/variationget [amd64, i386]
  • usr/bin/xmlget [amd64, i386]
  • usr/bin/xmltext [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/emboss/distmat [amd64, i386]
  • usr/lib/emboss/emowse [amd64, i386]

emboss-doc

• E doc-base-file-references-missing-file
  • domainatrix:13 /usr/share/doc/emboss-doc/doc/manuals/domainatrix.txt
  • emboss-apps:8 /usr/share/doc/emboss-doc/doc/programs/html/index.html
  • emboss-apps:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • emboss-groups:8 /usr/share/doc/emboss-doc/doc/programs/html/groups.html
  • emboss-groups:9 /usr/share/doc/emboss-doc/doc/programs/html/*.html
  • emboss-qg:11 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.pdf
  • emboss-qg:8 /usr/share/doc/emboss-doc/doc/manuals/emboss_qg.ps
• I package-contains-empty-directory
  • usr/share/EMBOSS/doc/

emboss-lib (6.6.0+dfsg-7+b1; main)

• X binary-file-built-without-LFS-support
  • usr/lib/emboss/lib/libajax.so.6.0.5
  • usr/lib/emboss/lib/libeplplot.so.3.2.7
  • usr/lib/emboss/lib/libnucleus.so.6.0.5
• O embedded-library
  • usr/lib/emboss/lib/libepcre.so.7.0.9: pcre3
• W package-has-unnecessary-activation-of-ldconfig-trigger
• X shlib-calls-exit
  • usr/lib/emboss/lib/libajaxdb.so.6.0.5
  • usr/lib/emboss/lib/libeplplot.so.3.2.7
• I spelling-error-in-binary
  • usr/lib/emboss/lib/libajax.so.6.0.5 nam name
  • usr/lib/emboss/lib/libajaxg.so.6.0.5 xwindows X
  • usr/lib/emboss/lib/libensembl.so.6.0.5 differnt different
  • usr/lib/emboss/lib/libensembl.so.6.0.5 whithout without

emboss-test

• W csh-considered-harmful
  • usr/share/EMBOSS/test/memtest/purify.csh
  • usr/share/EMBOSS/test/memtest/valgrind.csh
  • usr/share/EMBOSS/test/qa/qatest.csh
• W privacy-breach-generic
  • usr/share/EMBOSS/test/data/memenew/ex1.html [<img src="http://meme.nbcr.net/meme/images/meme.png" alt="meme">] (http://meme.nbcr.net/meme/images/meme.png)

jemboss

• W binary-without-manpage
  • usr/bin/jemboss
  • usr/bin/runJemboss.sh
• W classpath-contains-relative-path
  • usr/share/EMBOSS/jemboss/lib/jemboss.jar: lib/jakarta-regexp-1.2.jar, lib/jalviewApplet.jar
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/jemboss.desktop
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/EMBOSS/jemboss/README
  • usr/share/EMBOSS/jemboss/lib/README
  • usr/share/EMBOSS/jemboss/readme.html
  • usr/share/EMBOSS/jemboss/resources/readme.html
  • usr/share/EMBOSS/jemboss/utils/README
• O script-with-language-extension
  • usr/bin/runJemboss.sh

• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

entangle

• E doc-base-file-references-wrong-path
  • entangle:10 /usr/share/gtk-doc/html/entangle/*.html [amd64, i386]
  • entangle:9 /usr/share/gtk-doc/html/entangle/index.html [amd64, i386]
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libentangle_backend.so.0.0.0 [amd64, i386]
  • usr/lib/i386-linux-gnu/libentangle_frontend.so.0.0.0 [amd64, i386]
  • usr/lib/x86_64-linux-gnu/libentangle_backend.so.0.0.0 [amd64, i386]
  • usr/lib/x86_64-linux-gnu/libentangle_frontend.so.0.0.0 [amd64, i386]
• W non-dev-pkg-with-shlib-symlink
  • usr/lib/i386-linux-gnu/libentangle_backend.so.0.0.0 usr/lib/i386-linux-gnu/libentangle_backend.so [amd64, i386]
  • usr/lib/i386-linux-gnu/libentangle_frontend.so.0.0.0 usr/lib/i386-linux-gnu/libentangle_frontend.so [amd64, i386]
  • usr/lib/x86_64-linux-gnu/libentangle_backend.so.0.0.0 usr/lib/x86_64-linux-gnu/libentangle_backend.so [amd64, i386]
  • usr/lib/x86_64-linux-gnu/libentangle_frontend.so.0.0.0 usr/lib/x86_64-linux-gnu/libentangle_frontend.so [amd64, i386]
• W package-name-doesnt-match-sonames
  • libentangle-backend0 libentangle-frontend0 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/i386-linux-gnu/libentangle_backend.so.0.0.0 patern pattern [amd64, i386]
  • usr/lib/x86_64-linux-gnu/libentangle_backend.so.0.0.0 patern pattern [amd64, i386]

gir1.2-entangle-0.1

• W gir-missing-typelib-dependency
  • usr/share/gir-1.0/Entangle-0.1.gir gir1.2-entangle-0.1
• W gir-section-not-libdevel
  • usr/share/gir-1.0/Entangle-0.1.gir introspection
• I typelib-not-in-multiarch-directory
  • usr/lib/girepository-1.0/Entangle-0.1.typelib usr/lib/i386-linux-gnu/girepository-1.0
  • usr/lib/girepository-1.0/Entangle-0.1.typelib usr/lib/x86_64-linux-gnu/girepository-1.0

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 221)
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 2.3.12-1
• I testsuite-autopkgtest-missing

ncbi-epcr

• X binary-file-built-without-LFS-support
  • usr/bin/e-PCR
  • usr/bin/fahash
  • usr/bin/famap
  • usr/bin/re-PCR

• I debian-pyversions-is-obsolete
• I debian-rules-contains-unnecessary-get-orig-source-target
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://pypi.debian.net/epigrass/epigrass-(.*).tar.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 185)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 10
• P source-contains-prebuilt-binary
  • Epigrass/epimodels.so
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/epigrass.git
  • vcs-git https://anonscm.debian.org/git/debian-med/epigrass.git

epigrass

• W binary-without-manpage
  • usr/bin/neteditor [amd64, i386]
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python) [amd64, i386]
• X duplicate-files
  • usr/share/doc/epigrass/demos/CustomModel.py usr/share/doc/epigrass/demos/CustomModel_example.py [amd64, i386]

• X debian-watch-does-not-check-gpg-signature

examl

• X binary-file-built-without-LFS-support
  • usr/bin/parse-examl
  • usr/lib/examl/bin/examl
  • usr/lib/examl/bin/examl-AVX
  • usr/lib/examl/bin/examl-OMP
  • usr/lib/examl/bin/examl-OMP-AVX
• I spelling-error-in-binary
  • usr/lib/examl/bin/examl-OMP Whe When
  • usr/lib/examl/bin/examl-OMP-AVX Whe When

• X debian-watch-does-not-check-gpg-signature
• X deprecated-configure-filename

exonerate

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/exonerate comparision comparison [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/exonerate-server.1.gz distrubuted distributed [amd64, i386]
  • usr/share/man/man1/exonerate.1.gz alignemnt alignment [amd64, i386]
  • usr/share/man/man1/exonerate.1.gz ammount amount [amd64, i386]
  • usr/share/man/man1/exonerate.1.gz distrubuted distributed [amd64, i386]
  • usr/share/man/man1/exonerate.1.gz transistion transition [amd64, i386]
  • usr/share/man/man1/fastautils.1.gz distrubuted distributed [amd64, i386]
  • usr/share/man/man1/ipcress.1.gz Specifiy Specify [amd64, i386]
  • usr/share/man/man1/ipcress.1.gz distrubuted distributed [amd64, i386]