Lintian Reports

Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the report showing only errors and warnings. Also see their QA overview.

abacas (1.3.1-5) §

abacas

abyss (2.1.5-7) §

abyss

acedb (4.9.39+dfsg.02-4) §

acedb-other

adapterremoval (2.2.3-1) §

adapterremoval

adapterremoval (2.2.4-1)

adapterremoval

adun.app (0.81-13) §

adun-core

adun.app

aegean (0.16.0+dfsg-1) §

aegean

aeskulap (0.2.2-beta2+git20180219.8787e95-2) §

aeskulap

aevol (5.0-2) §

aevol (5.0-2+b1; main)

aghermann (1.1.2-2) §

aghermann

alien-hunter (1.7-7) §

alien-hunter

alter-sequence-alignment (1.3.4-2) §

altree (1.3.1-7) §

altree (1.3.1-7+b1; main)

altree-examples

amap-align (2.2+git20080214.600fc29+dfsg-1) §

amap-align

amide (1.0.5-12) §

amide (1.0.5-12+b1; main)

ampliconnoise (1.29-8) §

ampliconnoise

ampliconnoise-dbgsym

andi (0.12-4) §

andi

anfo (0.98-7) §

anfo

libanfo0

aragorn (1.2.38-2) §

aragorn

arb (6.0.6-4; non-free) §

arb

arb-common

arb-doc

libarb

libarb-dev

arden (1.0-4) §

arden

ariba (2.13.3+ds-1) §

art-nextgen-simulation-tools (20160605+dfsg-3) §

art-nextgen-simulation-tools

art-nextgen-simulation-tools-profiles

artemis (17.0.1+dfsg-2) §

artemis

artfastqgenerator (0.0.20150519-3) §

assemblytics (1.0+ds-1) §

assemblytics

augustus (3.3.2+dfsg-2) §

augustus

augustus-data

autodock-vina (1.1.2-5) §

autodock-vina (1.1.2-5+b1; main)

autodocksuite (4.2.6-6) §

autodock

autogrid

autodocktools (1.5.7-4; non-free) §

autodocktools

axe-demultiplexer (0.3.3+dfsg-1) §

axe-demultiplexer

baitfisher (1.2.7+git20180107.e92dbf2+dfsg-1) §

baitfisher

bali-phy (3.4.1+dfsg-1) §

bali-phy

bali-phy-dbgsym

ball (1.4.3~beta1-3) §

ball (1.4.3~beta1-4)

ball (1.5.0+git20180813.37fc53c-3)

ballview

libball1.5

libball1.5-dev

libball1.5-doc

libballview1.5

libballview1.5-dev

python-ball

bambamc (0.0.50-3) §

libbambamc0

bamtools (2.5.1+dfsg-3) §

libbamtools-doc

libbamtools2.5.1

bandage (0.8.1-1) §

bandage

barrnap (0.9+dfsg-1) §

barrnap

bart (0.4.04-2) §

bart

bart-view (0.1.00-2) §

bart-view

bcbio (1.1.4-1) §

bcbio

bcbio-doc

bcftools (1.9-1) §

bcftools

beads (1.1.18+dfsg-3) §

beads

beagle (5.0-180928+dfsg-1) §

beagle-doc

beast-mcmc (1.10.4+dfsg-1) §

beast-mcmc

beast-mcmc-examples

libnucleotidelikelihoodcore0

libnucleotidelikelihoodcore0-dbgsym

beast2-mcmc (2.5.1+dfsg-2) §

beast2-mcmc-doc

beast2-mcmc-examples

bedops (2.4.35+dfsg-1) §

bedops

bedops-dbgsym

bedops-doc

bedtools (2.27.1+dfsg-4) §

bedtools

bedtools-test

berkeley-express (1.5.2+dfsg-1) §

berkeley-express (1.5.2+dfsg-1+b2; main)

bio-eagle (2.4.1-1) §

bio-rainbow (2.0.4+dfsg-1) §

bio-rainbow

bio-tradis (1.4.1+dfsg-1) §

bio-tradis

biococoa (2.2.2-4) §

libbiococoa-dev (2.2.2-4+b1; main)

libbiococoa2 (2.2.2-4+b1; main)

libbiococoa2-dbgsym (2.2.2-4+b1; main)

biojava-live (1:1.7.1-8) §

libbiojava-java

libbiojava-java-demos

libbiojava-java-doc

biojava4-live (4.2.12+dfsg-2) §

libbiojava4-java

biomaj3 (3.1.8-1) §

python3-biomaj3

biomaj3-cli (3.1.10-1) §

python3-biomaj3-cli

biomaj3-core (3.0.16-1) §

python3-biomaj3-core

biomaj3-daemon (3.0.19-1) §

python3-biomaj3-daemon

biomaj3-download (3.0.21-1) §

python3-biomaj3-download

biomaj3-process (3.0.13-1) §

python3-biomaj3-process

biomaj3-user (3.0.8-1) §

python3-biomaj3-user

biomaj3-zipkin (0.2.2-1) §

python3-biomaj3-zipkin

bioperl (1.7.4-1) §

libbio-perl-perl

bioperl-run (1.7.3-1) §

bioperl-run

libbio-perl-run-perl

biosquid (1.9g+cvs20050121-11) §

biosquid

libsquid-dev

libsquid1

biosyntax (1.0.0b-1) §

biosyntax-example

bitseq (0.7.5+dfsg-4) §

bitseq

blasr (5.3.2+dfsg-1.1) §

blasr

blimps (3.9+ds-1; non-free) §

blimps-examples

blimps-utils

libblimps3

bolt-lmm (2.3.2+dfsg-3) §

bolt-lmm (2.3.2+dfsg-3+b1; main)

bowtie (1.1.2-6) §

bowtie-examples

bowtie (1.2.2+dfsg-4)

bowtie

bowtie2 (2.2.5-2) §

bowtie2-examples

bowtie2 (2.3.4.3-1)

bowtie2

boxshade (3.3.1-12) §

boxshade

bppphyview (0.6.1-1) §

bppphyview

bppsuite (2.4.1-1) §

bppsuite

bppsuite-examples

brig (0.95+dfsg-2) §

brig

bwa (0.7.17-3) §

bwa

cain (1.10+dfsg-3) §

cain

cain-examples

camitk (4.1.2-3) §

libcamitk-dev

libcamitk4

libcamitk4-data

libqtpropertybrowser-dev

libqtpropertybrowser4

camp (0.8.2-1) §

libcamp0.8

canu (1.8+dfsg-2) §

canu

cassiopee (1.0.9-2) §

libcassie-dev

libcassie-doc

libcassie1v5

cct (20170919+dfsg-1) §

cct

cct-examples

cd-hit (4.6.8-2) §

cd-hit

cdbfasta (0.99-20100722-5) §

cdbfasta

centrifuge (1.0.3~beta-1) §

centrifuge (1.0.3-2)

centrifuge

cfflib (2.0.5-3) §

cgview (0.0.20100111-4) §

cgview

changeo (0.4.5-1) §

changeo

charls (2.0.0+dfsg-1) §

libcharls2

chromhmm (1.18+dfsg-1) §

chromimpute (1.0.3+dfsg-1) §

ciftilib (1.5.3-2) §

libcifti0

circlator (1.5.5-3) §

circos (0.69.6+dfsg-2) §

circos

fonts-circos-symbols

circos-tools (0.23-1) §

circos-tools

clearcut (1.0.9-4) §

clearcut

clearcut-dbgsym

clonalframe (1.2-9) §

clonalframe

clonalframeml (1.11-2) §

clonalframeml

clonalorigin (1.0-3) §

clonalorigin

clustalo (1.2.4-2) §

clustalo

clustalw (2.1+lgpl-6) §

clustalw

clustalx (2.1+lgpl-8) §

clustalx

cluster3 (1.57-1; non-free) §

cnvkit (0.9.5-3) §

cnvkit

codonw (1.4.4-4) §

codonw

coils (2002-7) §

ncoils

concavity (0.1+dfsg.1-4) §

concavity

consensuscore (1.1.1+dfsg-1) §

conservation-code (20110309.0-7) §

conservation-code

crac (2.5.0+dfsg-3) §

crac

ctdconverter (2.0-4) §

ctdconverter

ctdopts (1.2-3) §

ctn (3.2.0~dfsg-6) §

ctn (3.2.0~dfsg-6+b1; main)

ctsim (6.0.2-2) §

ctsim

ctsim-doc

cufflinks (2.2.1+dfsg.1-3+b1; non-free)

cwltool (1.0.20181217162649+dfsg-10) §

cwltool

cycle (0.3.1-14) §

cycle

cyvcf2 (0.10.8-1) §

python-cyvcf2

python3-cyvcf2

daligner (1.0+git20180524.fd21879-1) §

daligner

dascrubber (1.1-1) §

dascrubber

dawg (1.2-2) §

dawg

dazzdb (1.0+git20180908.0bd5e07-1) §

dazzdb

dcm2niix (1.0.20181125-1) §

dcm2niix

dcmtk (3.6.4-2) §

dcmtk

dcmtk-doc

libdcmtk14

debian-med (3.2) §

med-config

med-epi

med-tasks

deepnano (0.0+git20170813.e8a621e-3) §

deepnano

delly (0.8.1-2) §

delly

dialign (2.2.1-10) §

dialign

dialign-t (1.0.2-12) §

dialign-tx

diamond-aligner (0.9.24+dfsg-1) §

diamond-aligner

dicom3tools (1.00~20180803063840-1) §

dicom3tools

dicompyler (0.4.2.0-2) §

dicompyler

dicomscope (3.6.0-20) §

dicomscope

dindel (1.01-wu1-3+dfsg-1) §

dindel (1.01-wu1-3+dfsg-1+b1; main)

discosnp (2.3.0-2) §

discosnp

disulfinder (1.2.11-8) §

disulfinder

dnaclust (3-6) §

dnaclust (3-6+b1; main)

dssp (3.0.0-3) §

dssp (3.0.0-3+b1; main)

dwgsim (0.1.12-2) §

dwgsim

e-mem (1.0.1-2) §

e-mem

ea-utils (1.1.2+dfsg-5) §

ea-utils

ecopcr (1.0.1+dfsg-1) §

ecopcr

edfbrowser (1.67+dfsg-1) §

edfbrowser

edflib (1.15-1) §

libedf1

edtsurf (0.2009-6) §

edtsurf

eigensoft (7.2.1+dfsg-1) §

eigensoft

elastix (4.9.0-1) §

elastix

elastix-doc

elph (1.0.1-2) §

elph

embassy-domainatrix (0.1.660-3) §

embassy-domainatrix

embassy-domalign (0.1.660-3) §

embassy-domalign

embassy-domsearch (1:0.1.660-3) §

embassy-domsearch

embassy-phylip (3.69.660-3; non-free) §

embassy-phylip

emboss (6.6.0+dfsg-7) §

emboss (6.6.0+dfsg-7+b1; main)

emboss-doc

emboss-lib (6.6.0+dfsg-7+b1; main)

emboss-test

jemboss

emboss-explorer (2.2.0-10) §

emboss-explorer

epcr (2.3.12-1-7) §

ncbi-epcr

epigrass (2.4.7-2) §

epigrass

estscan (3.0.3-3) §

estscan

examl (3.0.21-2) §

examl

exonerate (2.4.0-4) §

exonerate

falcon (1.8.8-1) §

falcon

fast5 (0.6.5-2) §

fast5

fasta3 (36.3.8g-1; non-free) §

fasta3

fasta3-doc

fastaq (3.17.0-2) §

fastdnaml (1.2.2-13) §

fastdnaml

fastlink

fastlink-dbgsym

fastlink-doc

fastml (3.1-4) §

fastml

fastp (0.19.6+dfsg-1) §

fastp

fastp (0.19.8+dfsg-1)

fastp

fastqc (0.11.8+dfsg-1) §

fastqtl (2.184+dfsg-6) §

fastqtl (2.184+dfsg-6+b1; main)

fastqtl-doc

fasttree (2.1.10-2) §

fasttree

fastx-toolkit (0.0.14-6) §

fastx-toolkit

fermi-lite (0.1-5) §

libfml0

ffindex (0.9.9.9-2) §

libffindex0

figtree (1.4.4-3) §

figtree

fis-gtm (6.3-007-1) §

fis-gtm-6.3-007

fitgcp (0.0.20150429-2) §

fitgcp

flexbar (1:3.4.0-2) §

flexbar

freebayes (1.2.0-2) §

freebayes

freecontact (1.0.21-7) §

freecontact (1.0.21-7+b1; main)

libfreecontact-doc

libfreecontact0v5 (1.0.21-7+b1; main)

freemedforms-project (0.9.4-2) §

freediams

freediams-doc-en

freediams-doc-fr

freemedforms-common-resources

freemedforms-emr

freemedforms-emr-doc-en

freemedforms-emr-doc-fr

freemedforms-emr-resources

freemedforms-freedata

freemedforms-i18n

freemedforms-libs

freemedforms-project

freemedforms-theme

fsa (1.15.9+dfsg-4) §

fsa

fsm-lite (1.0-3) §

fw4spl (17.2.0-2) §

fw4spl

g2 (0.72-8) §

libg2-dev (0.72-8+b1; main)

libg20 (0.72-8+b1; main)

libg20-perl (0.72-8+b1; main)

galileo (0.5.1-6) §

galileo

galileo-daemon

garli (2.1-3) §

garli

garli-examples

garli-mpi

gasic (0.0.r19-4) §

gasic

gatb-core (1.4.1+git20181225.44d5a44+dfsg-2) §

gatb-core

gatb-core-testdata

libgatbcore-dev

libgatbcore2

gbrowse (2.56+dfsg-4) §

gbrowse

gbrowse-data

gdcm (2.8.8-9) §

gdcm-doc

libgdcm-java

libgdcm-tools

libgdcm2.8

libvtkgdcm2.8a

python3-gdcm

python3-vtkgdcm

gdpc (2.2.5-9) §

gdpc

gemma (0.98.1+dfsg-1) §

gemma

gemma-doc

genometester (4.0+git20180508.a9c14a6+dfsg-1) §

genometester

genometools (1.5.10+ds-3) §

genometools

genometools-common

libgenometools0

libgenometools0-dev

gentle (1.9+cvs20100605+dfsg1-7) §

gentle (1.9+cvs20100605+dfsg1-7+b1; main)

getdata (0.2-3) §

gfapy (1.0.0+dfsg-3) §

python3-gfapy

gff2aplot (2.0-11) §

gff2aplot

gff2ps (0.98l-2) §

gff2ps

ghmm (0.9~rc3-1) §

ghmm

libghmm1

giira (0.0.20140625-2) §

giira

ginkgocadx (3.8.8-1) §

ginkgocadx

glam2 (1064-7) §

glam2

gmap (2019-01-24-1; non-free) §

gmap

gnumed-client (1.7.5+dfsg-3) §

gnumed-client

gnumed-doc

gnumed-server (22.5-1) §

gnumed-server

golang-github-dataence-porter2 (0.0~git20150829.56e4718-2) §

suffixfsm

grabix (0.1.7-1) §

grabix

graphlan (1.1.3-1) §

graphlan

grinder (0.5.4-5) §

grinder

gubbins (2.3.4-1) §

gubbins

gwama (2.2.2+dfsg-2) §

gwyddion (2.52-1) §

gwyddion

gwyddion-plugins

libgwyddion2-0

harvest-tools (1.3-4) §

harvest-tools

hhsuite (3.0~beta3+dfsg-3) §

hhsuite

hilive (1.1-2) §

hilive

hinge (0.5.0-2) §

hinge (0.5.0-4)

hinge

hisat2 (2.1.0-2) §

hisat2

hmmer (3.2.1+dfsg-1) §

hmmer

hmmer-examples

hmmer2 (2.3.2+dfsg-6) §

libhmmer2-dev

htseq (0.11.2-1) §

python-htseq

python3-htseq

htsjdk (2.18.2+dfsg-2) §

libhtsjdk-java-doc

htslib (1.9-10) §

htslib-test

libhts-dev

libhts2

hunspell-en-med (0.0.20140410-1) §

hunspell-en-med

hyphy (2.3.14+dfsg-1) §

hyphy-common

hyphy-mpi

hyphy-pt

idba (1.1.3-3) §

idba

igor (1.3.0+dfsg-1) §

igor

igraph (0.7.1-4) §

libigraph0v5

igv (2.4.17+dfsg-1; non-free) §

imagej (1.52j-1) §

libij-java-doc

imagevis3d (3.1.0-7) §

imagevis3d (3.1.0-7+b2; main)

indelible (1.03-4) §

indelible

infernal (1.1.2-2) §

infernal

insighttoolkit4 (4.12.2-dfsg1-4) §

insighttoolkit4-examples

insighttoolkit4-python (4.12.2-dfsg1-4+b1; main)

libinsighttoolkit4-dev (4.12.2-dfsg1-4+b1; main)

libinsighttoolkit4.12 (4.12.2-dfsg1-4+b1; main)

insighttoolkit4 (4.13.0-dfsg1-2~exp1)

insighttoolkit4-examples

insighttoolkit4-python

libinsighttoolkit4-dev

libinsighttoolkit4.13

insighttoolkit4 (4.13.1-dfsg1-1~exp2)

insighttoolkit4-examples

invesalius (3.1.99992-2) §

invesalius

ipig (0.0.r5-3) §

ipig

iqtree (1.6.9+dfsg-1) §

iqtree

ismrmrd (1.4.0-1) §

ismrmrd-tools

libismrmrd-doc

libismrmrd1.3

iva (1.0.9+ds-6) §

iva

jaligner (1.0+dfsg-6) §

jam-lib (0.1.git20180106.740247a+dfsg-1) §

libjam-java-doc

jebl2 (0.1+git20180418.653eb83-1) §

libjebl2-java-doc

jellyfish (2.2.10-2) §

jellyfish

jellyfish-examples

libjellyfish-2.0-2

libjellyfish-2.0-dev

libjellyfish-perl

jellyfish1 (1.1.11-4) §

jellyfish1

jheatchart (0.6-1) §

libjheatchart-java-doc

jmodeltest (2.1.10+dfsg-7) §

jmodeltest

kalign (1:2.03+20110620-5) §

kalign

khmer (2.1.2+dfsg-6) §

khmer

khmer-common

liboxli1

kineticstools (0.6.1+git20180425.27a1878-2) §

kineticstools

king (2.23.161103+dfsg1-3) §

king

king-probe (2.16.160404+git20180613.a09b012-1) §

king-probe

kissplice (2.4.0-p1-4) §

kissplice

kma (1.1.7-1) §

kma

kmc (2.3+dfsg-7) §

kmc

kmer (0~20150903+r2013-6) §

atac

leaff

kmerresistance (2.0+git20180205.26467e9-1) §

kmerresistance

kraken (1.1-3) §

kraken

lagan (2.0-3) §

lagan

lamarc (2.1.10.1+dfsg-3) §

lamarc

lambda-align (1.0.3-5) §

lambda-align2 (2.0.0-5) §

lambda-align2

last-align (963-2) §

last-align

lefse (1.0.8-2) §

lefse

libace-perl (1.92-8) §

libace-perl (1.92-8+b1; main)

libbio-coordinate-perl (1.7.1-3) §

libbio-das-lite-perl (2.11-7) §

libbio-graphics-perl (2.40-3) §

libbio-graphics-perl

libbio-mage-perl (20030502.3-5) §

libbio-mage-perl

libbio-mage-utils-perl (20030502.0-4) §

libbio-mage-utils-perl

libbiod (0.1.0-6) §

libbiod0

libbiod (0.2.1-1)

libbiod-dev

libbiod0

libbioparser-dev (1.2.1-1) §

libbpp-core (2.4.1-3) §

libbpp-core-dev

libbpp-core4

libbpp-phyl (2.4.1-2) §