Lintian Reports

Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the report showing only errors and warnings. Also see their QA overview.

abacas (1.3.1-3)

abacas

abyss (2.0.2-2)

abyss

acedb (4.9.39+dfsg.02-1)

acedb-other

acedb-other-belvu

acedb-other-dotter

adapterremoval (2.2.0-1)

adapterremoval

adapterremoval-examples

adun.app (0.81-9)

adun-core (0.81-9+b2; main)

adun.app (0.81-9+b2; main)

adun.app-dbg (0.81-9+b2; main)

aegean (0.15.2+dfsg-1)

aegean

aegean-dbg

aeskulap (0.2.2b1+git20161206-1)

aeskulap

aevol (4.4-1)

aevol (4.4-1+b4; main)

aghermann (1.1.2-1)

aghermann

alien-hunter (1.7-5)

alien-hunter

alter-sequence-alignment (1.3.3+dfsg-1)

alter-sequence-alignment

altree (1.3.1-4)

altree (1.3.1-4+b2; main)

altree-examples

amap-align (2.2-6)

amap-align

amide (1.0.5-7)

amide

ampliconnoise (1.29-6)

ampliconnoise

andi (0.10-2)

andi

anfo (0.98-5)

anfo

libanfo0

libanfo0-dev

aragorn (1.2.38-1)

aragorn

arb (6.0.6-1)

arb

arb-common

arb-doc

libarb

libarb-dev

arden (1.0-3)

arden

ariba (2.7.1+ds-1)

ariba

ariba (2.7.2+ds-1)

ariba

art-nextgen-simulation-tools (20160605+dfsg-2)

art-nextgen-simulation-tools

art-nextgen-simulation-tools-profiles

artemis (16.0.17+dfsg-1)

artemis

artfastqgenerator (0.0.20150519-2)

artfastqgenerator

artfastqgenerator-doc

artfastqgenerator-examples

augustus (3.2.3+dfsg-1)

augustus

augustus-data

augustus-doc

autodock-vina (1.1.2-3)

autodock-vina (1.1.2-3+b5; main)

autodocksuite (4.2.6-3)

autodock (4.2.6-3+b1; main)

autodock-getdata

autodock-test

autogrid (4.2.6-3+b1; main)

autogrid-test

autodocktools (1.5.7-2)

autodocktools

axe-demultiplexer (0.3.2+dfsg1-1)

axe-demultiplexer

baitfisher (1.0+dfsg-1)

baitfisher

ball (1.4.3~beta1-3)

ballview

libball1.4

libball1.4-data

libball1.4-dev

libball1.4-doc

libballview1.4

libballview1.4-dev

python-ball

python-ballview

bambamc (0.0.50-1)

libbambamc-dev

libbambamc0

bamtools (2.4.1+dfsg-1)

bamtools

libbamtools-dev

libbamtools-doc

libbamtools2.4.0

barrnap (0.7+dfsg-2)

barrnap

bart (0.4.00-1)

bart

libbart-dev

octave-bart

bcftools (1.3.1-1)

bcftools (1.3.1-1+b1; main)

beagle (4.1~160727-86a+dfsg-1)

beagle

beagle-doc

beagle (4.1~170121-6cc+dfsg-1)

beagle

beagle-doc

beast-mcmc (1.8.4+dfsg.1-1)

beast-mcmc

beast-mcmc-doc

beast-mcmc-examples

libnucleotidelikelihoodcore0

beast2-mcmc (2.4.4+dfsg-1)

beast2-mcmc

beast2-mcmc-doc

beast2-mcmc-examples

bedops (2.4.20+dfsg-2)

bedops

bedtools (2.26.0+dfsg-3)

bedtools

bedtools-test

berkeley-express (1.5.1-3)

berkeley-express (1.5.1-3+b1; main)

berkeley-express-doc

bio-eagle (2.3-3)

bio-eagle

bio-eagle-examples

bio-eagle (2.3.1-1)

bio-eagle

bio-eagle-examples

bio-rainbow (2.0.4-1)

bio-rainbow (2.0.4-1+b1; main)

bio-tradis (1.3.1+dfsg-1)

bio-tradis

biococoa (2.2.2-2)

libbiococoa-dev (2.2.2-2+b1; main)

libbiococoa2 (2.2.2-2+b1; main)

biojava-live (1:1.7.1-5)

libbiojava-java

libbiojava-java-demos

libbiojava-java-doc

libbiojava1.7-java

biojava4-live (4.2.5+dfsg-1)

libbiojava4-java

libbiojava4-java-doc

libbiojava4.0-java

biomaj (1.2.3-11)

biomaj

biomaj-properties

biomaj-watcher (1.2.2-4)

biomaj-watcher

bioperl (1.7.1-2)

bioperl

libbio-perl-perl

bioperl-run (1.7.1-3)

bioperl-run

libbio-perl-run-perl

biosquid (1.9g+cvs20050121-7)

biosquid

biosquid-dev

bitops (1.0-6-1)

r-cran-bitops

blasr (5.3+0-1)

blasr

blimps (3.9-1; non-free)

blimps-examples

blimps-utils

libblimps3

libblimps3-dev

bowtie (1.1.2-6)

bowtie

bowtie-examples

bowtie2 (2.2.5-2)

bowtie2-examples

bowtie2 (2.3.1-1)

bowtie2

bowtie2-examples

boxshade (3.3.1-10)

boxshade

brig (0.95+dfsg-1)

brig

bwa (0.7.15-3)

bwa

libbwa-dev

cain (1.10+dfsg-2)

cain

cain-examples

cain-solvers

camitk (4.0.4-2)

camitk-actionstatemachine

camitk-config

camitk-imp

libcamitk-dev

libcamitk4

libcamitk4-data

libcamitk4-doc

libqtpropertybrowser-dev

libqtpropertybrowser4

camp (0.7.1.5-1)

libcamp-dev

libcamp0.7

canu (1.3+dfsg-1)

canu

cassiopee (1.0.5-1)

cassiopee

libcassie-dev

libcassie-doc

libcassie1v5

cd-hit (4.6.6-2)

cd-hit

cdbfasta (0.99-20100722-3)

cdbfasta

cgview (0.0.20100111-2)

cgview

charls (1.1.0+dfsg-2)

libcharls-dev

libcharls1

ciftilib (1.5.1-1)

libcifti-dev

libcifti-doc

libcifti0

circlator (1.4.1-1)

circlator

circos (0.69.4+dfsg-1)

circos

fonts-circos-symbols

otf-symbols-circos

circos-tools (0.22-1)

circos-tools

clearcut (1.0.9-1)

clearcut (1.0.9-1+b1; main)

clonalframe (1.2-5)

clonalframe

clustalo (1.2.4-1)

clustalo

libclustalo-dev

libclustalo-doc

clustalw (2.1+lgpl-5)

clustalw

clustalx (2.1+lgpl-5)

clustalx

cluster3 (1.52a-1; non-free)

cluster3

codonw (1.4.4-3)

codonw (1.4.4-3+b1; main)

coils (2002-4)

ncoils (2002-4+b1; main)

concavity (0.1+dfsg.1-1)

concavity

consensuscore (1.0.2-2)

libconsensuscore-dev

python-pbconsensuscore

python3-pbconsensuscore

conservation-code (20110309.0-5)

conservation-code

crac (2.5.0+dfsg-1)

crac

ctn (3.2.0~dfsg-5)

ctn

ctn-dev

ctsim (5.2.0-4)

ctsim

ctsim-doc

ctsim-help

cufflinks (2.2.1-3+b1; main)

cwltool (1.0.20170114120503-1)

cwltool

daligner (1.0+20161119-1)

daligner

dascrubber (0~20160601-2)

dascrubber

dawg (1.2-1)

dawg (1.2-1+b1; main)

dazzdb (1.0+20161112-2)

dazzdb

dcm2niix (1.0.20161101-1)

dcm2niix

dcmtk (3.6.1~20160216-4)

dcmtk

dcmtk-doc

libdcmtk-dev

libdcmtk8

dcmtk (3.6.1~20170228-1~exp1)

dcmtk

dcmtk-doc

libdcmtk-dev

libdcmtk11

debian-med (3.0)

med-all

med-bio

med-bio-dev

med-cloud

med-config

med-data

med-dental

med-epi

med-his

med-imaging

med-imaging-dev

med-laboratory

med-oncology

med-pharmacy

med-physics

med-practice

med-psychology

med-rehabilitation

med-statistics

med-tasks

med-tools

med-typesetting

deepnano (0.0+20160706-1)

deepnano

deepnano-data

dialign (2.2.1-9)

dialign

dialign-t (1.0.2-9)

dialign-tx

dialign-tx-data

diamond-aligner (0.8.35+dfsg-1)

diamond-aligner

dichromat (2.0.0-3)

r-cran-dichromat

dicom3tools (1.00~20170109062447-1)

dicom3tools

dicom3tools (1.00~20170222075252-1~exp1)

dicom3tools

dicompyler (0.4.2-3)

dicompyler

dicomscope (3.6.0-15)

dicomscope

dicomscope-doc

libdicomscope-jni (3.6.0-15+b2; main)

dindel (1.01+dfsg-4)

dindel (1.01+dfsg-4+b1; main)

discosnp (1.2.6-1)

discosnp (1.2.6-1+b2; main)

disulfinder (1.2.11-6)

disulfinder

disulfinder-data

dnaclust (3-4)

dnaclust (3-4+b2; main)

dssp (2.2.1-3)

dssp (2.2.1-3+b2; main)

dssp-dbg (2.2.1-3+b2; main)

dwgsim (0.1.11-3)

dwgsim (0.1.11-3+b1; main)

ea-utils (1.1.2+dfsg-4)

ea-utils

ecopcr (0.5.0+dfsg-1)

ecopcr

edfbrowser (1.58-1)

edfbrowser (1.58-1+b1; main)

edflib (1.11-2)

libedf-dev

libedf1

edtsurf (0.2009-4)

edtsurf

eigensoft (6.1.4+dfsg-1)

eigensoft (6.1.4+dfsg-1+b1; main)

elastix (4.8-10)

elastix

elastix-doc

embassy-domainatrix (0.1.660-1)

embassy-domainatrix

embassy-domalign (0.1.660-1)

embassy-domalign

embassy-domsearch (1:0.1.660-1)

embassy-domsearch

embassy-phylip (3.69.660-1)

embassy-phylip

emboss (6.6.0+dfsg-6)

emboss

emboss-data

emboss-doc

emboss-lib

emboss-test

jemboss

emboss-explorer (2.2.0-8)

emboss-explorer

libemboss-acd-perl

epcr (2.3.12-1-4)

ncbi-epcr

epigrass (2.4.7-1)

epigrass

epigrass-doc

examl (3.0.18-2)

examl

exonerate (2.4.0-2)

exonerate

falcon (1.8.6-1)

falcon

fast5 (0.5.8-1)

libfast5-dev

python-fast5 (0.5.8-1+b2; main)

python3-fast5 (0.5.8-1+b2; main)

fastaq (3.14.0-1)

fastaq

fastaq (3.15.0-1)

fastaq

fastdnaml (1.2.2-11)

fastdnaml (1.2.2-11+b1; main)

fastlink (4.1P-fix100+dfsg-1+b1; main)

fastlink-doc

fastml (3.1-3)

fastml

fastqc (0.11.5+dfsg-6)

fastqc

fastqtl (2.184+dfsg-5)

fastqtl

fastqtl-doc

fasttree (2.1.9-1)

fasttree

fastx-toolkit (0.0.14-3)

fastx-toolkit

fermi-lite (0.1-2)

fml-asm (0.1-2+b1; main)

libfml-dev (0.1-2+b1; main)

libfml0 (0.1-2+b1; main)

fermi-lite (0.1-3)

fml-asm

libfml-dev

libfml0

ffindex (0.9.9.7-3)

ffindex

libffindex0

libffindex0-dev

figtree (1.4.2+dfsg-2)

figtree

filo (1.1.0-3)

filo (1.1.0-3+b1; main)

fis-gtm (6.3-000A-1)

fis-gtm

fis-gtm-6.3-000a

fitgcp (0.0.20150429-1)

fitgcp

flexbar (2.50-2)

flexbar (2.50-2+b1; main)

freebayes (1.0.2-1)

freebayes

freecontact (1.0.21-5)

freecontact

libfreecontact-dev

libfreecontact-doc

libfreecontact0-dbg

libfreecontact0v5

freemedforms-project (0.9.4-1)

freediams (0.9.4-1+b1; main)

freediams-doc-en

freediams-doc-fr

freemedforms-common-resources

freemedforms-emr (0.9.4-1+b1; main)

freemedforms-emr-doc-en

freemedforms-emr-doc-fr

freemedforms-emr-resources

freemedforms-freedata

freemedforms-i18n

freemedforms-libs (0.9.4-1+b1; main)

freemedforms-project

freemedforms-theme

fsa (1.15.9+dfsg-3)

fsa

fsm-lite (1.0-2)

fsm-lite

g2 (0.72-6)

libg2-dev

libg20

libg20-perl

galileo (0.5.1-4)

galileo

galileo-daemon

garli (2.1-1)

garli

garli-examples

gasic (0.0.r19-1)

gasic

gbrowse (2.56+dfsg-2)

gbrowse

gbrowse-calign

gbrowse-data

gdcm (2.6.6-3)

gdcm-doc

libgdcm-cil

libgdcm-java

libgdcm-tools

libgdcm2-dev

libgdcm2.6

libgdcm2.6-dbg

libvtkgdcm-cil

libvtkgdcm-java

libvtkgdcm-tools

libvtkgdcm2-dev

libvtkgdcm2.6

python-gdcm

python-vtkgdcm

gdcm (2.6.7-1~exp1)

gdcm-doc

libgdcm-cil

libgdcm-java

libgdcm-tools

libgdcm2-dev

libgdcm2.6