Lintian Reports

Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the report showing only errors and warnings. Also see their QA overview.

abacas (1.3.1-4)

abacas

abyss (2.0.2-3)

abyss

abyss-dbgsym

acedb (4.9.39+dfsg.02-1)

acedb-other

acedb-other-belvu

acedb-other-belvu-dbgsym

acedb-other-dbgsym

acedb-other-dotter

acedb-other-dotter-dbgsym

adapterremoval (2.2.2-1)

adapterremoval

adapterremoval-dbgsym

adapterremoval-examples

adun.app (0.81-10)

adun-core (0.81-10+b2; main)

adun.app (0.81-10+b2; main)

adun.app-dbg (0.81-10+b2; main)

aegean (0.15.2+dfsg-1)

aegean

aegean-dbg

aeskulap (0.2.2b1+git20161206-2)

aeskulap (0.2.2b1+git20161206-2+b1; main)

aeskulap-dbgsym (0.2.2b1+git20161206-2+b1; main)

aevol (5.0-1)

aevol

aevol-dbgsym

aghermann (1.1.2-1)

aghermann (1.1.2-1+b1; main)

aghermann-dbgsym (1.1.2-1+b1; main)

alien-hunter (1.7-6)

alien-hunter

alter-sequence-alignment (1.3.3+dfsg-1)

alter-sequence-alignment

altree (1.3.1-5)

altree

altree-dbgsym

altree-examples

amap-align (2.2-6)

amap-align

amap-align-dbgsym

amide (1.0.5-8)

amide

amide-dbgsym

ampliconnoise (1.29-7)

ampliconnoise

ampliconnoise-dbgsym

andi (0.11-1)

andi (0.11-1+b1; main)

andi-dbgsym (0.11-1+b1; main)

anfo (0.98-6)

anfo

anfo-dbgsym

libanfo0

libanfo0-dbgsym

libanfo0-dev

aragorn (1.2.38-1)

aragorn

aragorn-dbgsym

arb (6.0.6-2; non-free)

arb

arb-common

arb-dbgsym

arb-doc

libarb

libarb-dbgsym

libarb-dev

arden (1.0-3)

arden

ariba (2.10.3+ds-1)

ariba

ariba-dbgsym

art-nextgen-simulation-tools (20160605+dfsg-2)

art-nextgen-simulation-tools (20160605+dfsg-2+b1; main)

art-nextgen-simulation-tools-dbgsym (20160605+dfsg-2+b1; main)

art-nextgen-simulation-tools-profiles

artemis (16.0.17+dfsg-3)

artemis

artfastqgenerator (0.0.20150519-2)

artfastqgenerator

artfastqgenerator-doc

artfastqgenerator-examples

augustus (3.3+dfsg-2)

augustus

augustus-data

augustus-dbgsym

augustus-doc

autodock-vina (1.1.2-4)

autodock-vina

autodock-vina-dbgsym

autodocksuite (4.2.6-5)

autodock

autodock-dbgsym

autodock-getdata

autodock-test

autogrid

autogrid-dbgsym

autogrid-test

autodocktools (1.5.7-2; non-free)

autodocktools

axe-demultiplexer (0.3.2+dfsg1-1)

axe-demultiplexer (0.3.2+dfsg1-1+b1; main)

axe-demultiplexer-dbgsym (0.3.2+dfsg1-1+b1; main)

baitfisher (1.0+dfsg-2)

baitfisher

baitfisher-dbgsym

ball (1.4.3~beta1-3)

ballview (1.4.3~beta1-3+b1; main)

ballview-dbgsym (1.4.3~beta1-3+b1; main)

libball1.4 (1.4.3~beta1-3+b1; main)

libball1.4-data

libball1.4-dbgsym (1.4.3~beta1-3+b1; main)

libball1.4-dev (1.4.3~beta1-3+b1; main)

libball1.4-doc

libballview1.4 (1.4.3~beta1-3+b1; main)

libballview1.4-dbgsym (1.4.3~beta1-3+b1; main)

libballview1.4-dev (1.4.3~beta1-3+b1; main)

python-ball (1.4.3~beta1-3+b1; main)

python-ball-dbgsym (1.4.3~beta1-3+b1; main)

python-ballview (1.4.3~beta1-3+b1; main)

python-ballview-dbgsym (1.4.3~beta1-3+b1; main)

ball (1.4.3~beta1-4)

ballview

ballview-dbgsym

libball1.4

libball1.4-data

libball1.4-dbgsym

libball1.4-dev

libball1.4-doc

libballview1.4

libballview1.4-dbgsym

libballview1.4-dev

python-ball

python-ball-dbgsym

python-ballview

python-ballview-dbgsym

bambamc (0.0.50-1)

libbambamc-dev

libbambamc0

bamtools (2.4.1+dfsg-2)

bamtools

bamtools-dbgsym

libbamtools-dev

libbamtools-doc

libbamtools2.4.0

libbamtools2.4.0-dbgsym

barrnap (0.8+dfsg-2)

barrnap

bart (0.4.02-2)

bart

bart-dbgsym

libbart-dev

octave-bart

bcftools (1.6-3)

bcftools

bcftools-dbgsym

beads (1.1.13+dfsg-2)

beads

beads-dbgsym

beagle (4.1~170608+dfsg-2)

beagle

beagle-doc

beast-mcmc (1.8.4+dfsg.1-2)

beast-mcmc

beast-mcmc-doc

beast-mcmc-examples

libnucleotidelikelihoodcore0

libnucleotidelikelihoodcore0-dbgsym

beast2-mcmc (2.4.4+dfsg-1)

beast2-mcmc

beast2-mcmc-doc

beast2-mcmc-examples

bedops (2.4.26+dfsg-1)

bedops

bedops-dbgsym

bedtools (2.26.0+dfsg-5)

bedtools

bedtools-dbgsym

bedtools-test

berkeley-express (1.5.1-3)

berkeley-express (1.5.1-3+b1; main)

berkeley-express-dbgsym (1.5.1-3+b1; main)

berkeley-express-doc

bio-eagle (2.3.5-1)

bio-eagle

bio-eagle-dbgsym

bio-eagle-examples

bio-rainbow (2.0.4-1)

bio-rainbow (2.0.4-1+b1; main)

bio-rainbow-dbgsym (2.0.4-1+b1; main)

bio-tradis (1.3.3+dfsg-2)

bio-tradis

biococoa (2.2.2-3)

libbiococoa-dev (2.2.2-3+b1; main)

libbiococoa2 (2.2.2-3+b1; main)

libbiococoa2-dbgsym (2.2.2-3+b1; main)

biojava-live (1:1.7.1-6)

libbiojava-java

libbiojava-java-demos

libbiojava-java-doc

libbiojava1.7-java

biojava4-live (4.2.7+dfsg-2)

libbiojava4-java

libbiojava4-java-doc

libbiojava4.0-java

biomaj (1.2.3-12)

biomaj

biomaj-properties

biomaj3 (3.1.3-1)

python3-biomaj3

biomaj3-cli (3.1.7-1)

python3-biomaj3-cli

biomaj3-core (3.0.9-1)

python3-biomaj3-core

biomaj3-daemon (3.0.12-1)

python3-biomaj3-daemon

biomaj3-download (3.0.13-1)

python3-biomaj3-download

biomaj3-process (3.0.8-1)

python3-biomaj3-process

biomaj3-user (3.0.6-1)

python3-biomaj3-user

biomaj3-zipkin (0.2.2-1)

python3-biomaj3-zipkin

bioperl (1.7.2-2)

bioperl

libbio-perl-perl

bioperl-run (1.7.2-2)

bioperl-run

libbio-perl-run-perl

biosquid (1.9g+cvs20050121-10)

biosquid

biosquid-dbgsym

libsquid-dev

libsquid1

libsquid1-dbgsym

blasr (5.3+0-1)

blasr (5.3+0-1+b1; main)

blasr-dbgsym (5.3+0-1+b1; main)

blimps (3.9-3; non-free)

blimps-examples

blimps-utils

blimps-utils-dbgsym

libblimps3

libblimps3-dbgsym

libblimps3-dev

bowtie (1.1.2-6)

bowtie-examples

bowtie (1.2.1.1+dfsg-1)

bowtie

bowtie-dbgsym

bowtie-examples

bowtie2 (2.2.5-2)

bowtie2-examples

bowtie2 (2.3.3.1-1)

bowtie2

bowtie2-dbgsym

bowtie2-examples

boxshade (3.3.1-11)

boxshade

boxshade-dbgsym

bppphyview (0.5.1-1)

bppphyview

bppphyview-dbgsym

bppsuite (2.3.1-4)

bppsuite

bppsuite-dbgsym

bppsuite-examples

brig (0.95+dfsg-1)

brig

bwa (0.7.17-1)

bwa

bwa-dbgsym

libbwa-dev

cain (1.10+dfsg-2)

cain

cain-examples

cain-solvers

cain-solvers-dbgsym

camitk (4.0.4-2)

camitk-actionstatemachine (4.0.4-2+b2; main)

camitk-actionstatemachine-dbgsym (4.0.4-2+b2; main)

camitk-config (4.0.4-2+b2; main)

camitk-config-dbgsym (4.0.4-2+b2; main)

camitk-imp (4.0.4-2+b2; main)

camitk-imp-dbgsym (4.0.4-2+b2; main)

libcamitk-dev (4.0.4-2+b2; main)

libcamitk-dev-dbgsym (4.0.4-2+b2; main)

libcamitk4 (4.0.4-2+b2; main)

libcamitk4-data

libcamitk4-dbgsym (4.0.4-2+b2; main)

libcamitk4-doc

libqtpropertybrowser-dev (4.0.4-2+b2; main)

libqtpropertybrowser4 (4.0.4-2+b2; main)

libqtpropertybrowser4-dbgsym (4.0.4-2+b2; main)

camp (0.7.1.5-1)

libcamp0.7-dbgsym

camp (0.8.1-2)

libcamp-dev

libcamp0.8

libcamp0.8-dbgsym

canu (1.6+dfsg-1)

canu

canu-dbgsym

canu (1.6+dfsg-2)

canu

canu-dbgsym

cassiopee (1.0.7-1)

cassiopee

cassiopee-dbgsym

libcassie-dev

libcassie-doc

libcassie1v5

libcassie1v5-dbgsym

cd-hit (4.6.8-1)

cd-hit

cd-hit-dbgsym

cdbfasta (0.99-20100722-4)

cdbfasta

cdbfasta-dbgsym

cgview (0.0.20100111-3)

cgview

charls (1.1.0+dfsg-2)

libcharls-dev

libcharls1

libcharls1-dbgsym

ciftilib (1.5.1-1)

libcifti-dev

libcifti-doc

libcifti0

libcifti0-dbgsym

circlator (1.5.1-2)

circlator

circos (0.69.6+dfsg-1)

circos

fonts-circos-symbols

circos-tools (0.22-2)

circos-tools

clearcut (1.0.9-2)

clearcut

clearcut-dbgsym

clonalframe (1.2-7)

clonalframe

clonalframe-dbgsym

clonalframeml (1.11-1)

clonalframeml

clonalframeml-dbgsym

clonalorigin (1.0-2)

clonalorigin

clonalorigin-dbgsym

clustalo (1.2.4-1)

clustalo

clustalo-dbgsym

libclustalo-dev

libclustalo-doc

clustalw (2.1+lgpl-5)

clustalw

clustalw-dbgsym

clustalx (2.1+lgpl-6)

clustalx

clustalx-dbgsym

cluster3 (1.53-1; non-free)

cluster3

cluster3-dbgsym

codonw (1.4.4-3)

codonw (1.4.4-3+b1; main)

codonw-dbgsym (1.4.4-3+b1; main)

coils (2002-5)

ncoils

ncoils-dbgsym

concavity (0.1+dfsg.1-1)

concavity

concavity-dbgsym

consensuscore (1.0.2-2)

libconsensuscore-dev (1.0.2-2+b1; main)

python-pbconsensuscore (1.0.2-2+b1; main)

python-pbconsensuscore-dbgsym (1.0.2-2+b1; main)

python3-pbconsensuscore (1.0.2-2+b1; main)

python3-pbconsensuscore-dbgsym (1.0.2-2+b1; main)

conservation-code (20110309.0-6)

conservation-code

crac (2.5.0+dfsg-2)

crac

crac-dbgsym

ctn (3.2.0~dfsg-5)

ctn

ctn-dbgsym

ctn-dev

ctsim (5.2.0-4)

ctsim

ctsim-dbgsym

ctsim-doc

ctsim-help

cufflinks

cufflinks-dbgsym

cwltool (1.0.20170810192106-2)

cwltool

daligner (1.0+20171010-2)

daligner

daligner-dbgsym

dascrubber (0~20171015-1)

dascrubber

dascrubber-dbgsym

dawg (1.2-1)

dawg (1.2-1+b1; main)

dawg-dbgsym (1.2-1+b1; main)

dazzdb (1.0+20171014-1)

dazzdb

dazzdb-dbgsym

dcm2niix (1.0.20171017-1)

dcm2niix

dcm2niix-dbgsym

dcmtk (3.6.1~20160216-4)

dcmtk-doc

libdcmtk8

libdcmtk8-dbgsym

dcmtk (3.6.1~20170228-2)

dcmtk-doc

libdcmtk11

libdcmtk11-dbgsym

dcmtk (3.6.2-3)

dcmtk

dcmtk-dbgsym

dcmtk-doc

libdcmtk-dev

libdcmtk12

libdcmtk12-dbgsym

debian-med (3.0.1)

med-all

med-bio

med-bio-dev

med-cloud

med-config

med-data

med-dental

med-epi

med-his

med-imaging

med-imaging-dev

med-laboratory

med-oncology

med-pharmacy

med-physics

med-practice

med-psychology

med-rehabilitation

med-statistics

med-tasks

med-tools

med-typesetting

deepnano (0.0+20160706-1)

deepnano

deepnano-data

deepnano-dbgsym

dialign (2.2.1-9)

dialign

dialign-dbgsym

dialign-t (1.0.2-9)

dialign-tx

dialign-tx-data

dialign-tx-dbgsym

diamond-aligner (0.9.10+dfsg-1)

diamond-aligner

diamond-aligner-dbgsym

dicom3tools (1.00~20171115151618-1)

dicom3tools

dicom3tools-dbgsym

dicompyler (0.4.2.0-1)

dicompyler

dicomscope (3.6.0-18)

dicomscope

dicomscope-doc

libdicomscope-jni

libdicomscope-jni-dbgsym

dindel (1.01+dfsg-4)

dindel (1.01+dfsg-4+b1; main)

dindel-dbgsym (1.01+dfsg-4+b1; main)

discosnp (1.2.6-2)

discosnp

discosnp-dbgsym

disulfinder (1.2.11-7)

disulfinder

disulfinder-data

disulfinder-dbgsym

dnaclust (3-5)

dnaclust

dnaclust-dbgsym

dssp (3.0.0-2)

dssp

dssp-dbgsym

dwgsim (0.1.11-3)

dwgsim (0.1.11-3+b1; main)

dwgsim-dbgsym (0.1.11-3+b1; main)

e-mem (1.0.0-1)

e-mem

e-mem-dbgsym

ea-utils (1.1.2+dfsg-4)

ea-utils (1.1.2+dfsg-4+b1; main)

ea-utils-dbgsym (1.1.2+dfsg-4+b1; main)

ecopcr (0.5.0+dfsg-1)

ecopcr

ecopcr-dbgsym

edfbrowser (1.61+dfsg-1)

edfbrowser

edfbrowser-dbgsym

edflib (1.12-2)

libedf-dev

libedf1

libedf1-dbgsym

edtsurf (0.2009-5)

edtsurf

edtsurf-dbgsym

eigensoft (6.1.4+dfsg-1)

eigensoft (6.1.4+dfsg-1+b2; main)

eigensoft-dbgsym (6.1.4+dfsg-1+b2; main)

elastix (4.8-12)

elastix (4.8-12+b1; main)

elastix-dbgsym (4.8-12+b1; main)

elastix-doc

embassy-domainatrix (0.1.660-2)

embassy-domainatrix

embassy-domainatrix-dbgsym

embassy-domalign (0.1.660-2)

embassy-domalign

embassy-domalign-dbgsym

embassy-domsearch (1:0.1.660-2)

embassy-domsearch

embassy-domsearch-dbgsym

embassy-phylip (3.69.660-2; non-free)

embassy-phylip

embassy-phylip-dbgsym

emboss (6.6.0+dfsg-6)

emboss

emboss-data

emboss-dbgsym

emboss-doc

emboss-lib

emboss-lib-dbgsym

emboss-test

jemboss

emboss-explorer (2.2.0-9)

emboss-explorer

libemboss-acd-perl

epcr (2.3.12-1-5)

ncbi-epcr

ncbi-epcr-dbgsym

epigrass (2.4.7-2)

epigrass

epigrass-dbgsym

epigrass-doc

examl (3.0.18-2)

examl

examl-dbgsym

exonerate (2.4.0-2)

exonerate

exonerate-dbgsym

falcon (1.8.6-1.1)

falcon

falcon-dbgsym

fast5 (0.6.4-1)

fast5

libfast5-dev

python-fast5

python-fast5-dbgsym

python3-fast5

python3-fast5-dbgsym

fastaq (3.16.0-1)

fastaq

fastdnaml (1.2.2-12)

fastdnaml

fastdnaml-dbgsym

fastlink (4.1P-fix100+dfsg-1+b1; main)

fastlink-dbgsym (4.1P-fix100+dfsg-1+b1; main)

fastlink-doc

fastml (3.1-3)

fastml

fastml-dbgsym

fastqc (0.11.5+dfsg-6)

fastqc

fastqtl (2.184+dfsg-5)

fastqtl (2.184+dfsg-5+b2; main)

fastqtl-dbgsym (2.184+dfsg-5+b2; main)

fastqtl-doc

fasttree (2.1.10-1)

fasttree

fasttree-dbgsym

fastx-toolkit (0.0.14-5)

fastx-toolkit

fastx-toolkit-dbgsym

fermi-lite (0.1-4)

fml-asm

fml-asm-dbgsym

libfml-dev

libfml0

libfml0-dbgsym

ffindex (0.9.9.7-4)

ffindex

ffindex-dbgsym

libffindex0

libffindex0-dbgsym

libffindex0-dev

figtree (1.4.3+dfsg-3)

figtree

fis-gtm (6.3-002-3)

fis-gtm

fis-gtm-6.3-002

fis-gtm-6.3-002-dbgsym

fitgcp (0.0.20150429-1)

fitgcp

flexbar (1:3.0.3-2)

flexbar

flexbar-dbgsym

freebayes (1.1.0-1)

freebayes

freebayes-dbgsym

freecontact (1.0.21-6)

freecontact (1.0.21-6+b1; main)

freecontact-dbgsym (1.0.21-6+b1; main)

libfreecontact-dev (1.0.21-6+b1; main)

libfreecontact-doc

libfreecontact0v5 (1.0.21-6+b1; main)

libfreecontact0v5-dbgsym (1.0.21-6+b1; main)

freemedforms-project (0.9.4-2)

freediams

freediams-dbgsym

freediams-doc-en

freediams-doc-fr

freemedforms-common-resources

freemedforms-emr

freemedforms-emr-dbgsym

freemedforms-emr-doc-en

freemedforms-emr-doc-fr

freemedforms-emr-resources

freemedforms-freedata

freemedforms-i18n

freemedforms-libs

freemedforms-libs-dbgsym

freemedforms-project

freemedforms-theme

fsa (1.15.9+dfsg-3)

fsa

fsa-dbgsym

fsm-lite (1.0-2)

fsm-lite

fsm-lite-dbgsym

fw4spl (11.0.4-2)

fw4spl (11.0.4-2+b2; main)

fw4spl-dbgsym (11.0.4-2+b2; main)

g2 (0.72-7)

libg2-dev

libg20

libg20-dbgsym

libg20-perl

libg20-perl-dbgsym

galileo (0.5.1-5)

galileo

galileo-daemon

garli (2.1-2)

garli

garli-dbgsym

garli-examples

gasic (0.0.r19-3)

gasic

gbrowse (2.56+dfsg-3)

gbrowse

gbrowse-calign

gbrowse-calign-dbgsym

gbrowse-data

gdcm (2.8.4-1)

gdcm-doc

libgdcm-cil (2.8.4-1+b1; main)

libgdcm-cil-dbgsym (2.8.4-1+b1; main)

libgdcm-java (2.8.4-1+b1; main)

libgdcm-java-dbgsym (2.8.4-1+b1; main)

libgdcm-tools (2.8.4-1+b1; main)

libgdcm-tools-dbgsym (2.8.4-1+b1; main)

libgdcm2-dev (2.8.4-1+b1; main)

libgdcm2.8 (2.8.4-1+b1; main)

libgdcm2.8-dbgsym (2.8.4-1+b1; main)

libvtkgdcm-cil (2.8.4-1+b1; main)

libvtkgdcm-cil-dbgsym (2.8.4-1+b1; main)

libvtkgdcm-java (2.8.4-1+b1; main)

libvtkgdcm-java-dbgsym (2.8.4-1+b1; main)

libvtkgdcm-tools (2.8.4-1+b1; main)

libvtkgdcm-tools-dbgsym (2.8.4-1+b1; main)

libvtkgdcm2-dev (2.8.4-1+b1; main)

libvtkgdcm2.8 (2.8.4-1+b1; main)

libvtkgdcm2.8-dbgsym (2.8.4-1+b1; main)

python-gdcm (2.8.4-1+b1; main)

python-gdcm-dbgsym (2.8.4-1+b1; main)

python-vtkgdcm (2.8.4-1+b1; main)

python-vtkgdcm-dbgsym (2.8.4-1+b1; main)

gdpc (2.2.5-8)

gdpc

gdpc-dbgsym

gdpc-examples

genometools (1.5.10+ds-2)

genometools

genometools-common

genometools-doc

libgenometools0

libgenometools0-dbgsym

libgenometools0-dev

python-genometools

gentle (1.9+cvs20100605+dfsg1-6)

gentle

getdata (0.2-2)

getdata

gfapy (1.0.0+dfsg-2)

python3-gfapy

gff2aplot (2.0-9)

gff2aplot

gff2aplot-dbgsym

gff2ps (0.98d-6)

gff2ps

giira (0.0.20140625-1)

giira

ginkgocadx (3.8.7-1)

ginkgocadx

ginkgocadx-dbgsym

glam2 (1064-4)

glam2

glam2-dbgsym

gmap (2017-10-30-1; non-free)

gmap

gmap-dbgsym

libgmap1

libgmap1-dbgsym

libgmap1-dev

gnumed-client (1.6.15+dfsg-1)

gnumed-client

gnumed-client-de

gnumed-common

gnumed-doc