Lintian Reports

Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the report showing only errors and warnings. Also see their QA overview.

abacas (1.3.1-4) §

abacas

abyss (2.1.0-1) §

abyss

acedb (4.9.39+dfsg.02-3) §

acedb-other

adapterremoval (2.2.2-1) §

adapterremoval

adun.app (0.81-11) §

adun-core (0.81-11+b1; main)

adun.app (0.81-11+b1; main)

aegean (0.15.2+dfsg-1) §

aegean

aegean-dbg

aeskulap (0.2.2b1+git20161206-4) §

aeskulap

aevol (5.0-1) §

aevol

aghermann (1.1.2-1) §

aghermann (1.1.2-1+b1; main)

alien-hunter (1.7-6) §

alien-hunter

alter-sequence-alignment (1.3.3+dfsg-1) §

alter-sequence-alignment

altree (1.3.1-7) §

altree

altree-examples

amap-align (2.2-6) §

amap-align

amide (1.0.5-10) §

ampliconnoise (1.29-7) §

ampliconnoise (1.29-7+b1; main)

ampliconnoise-dbgsym (1.29-7+b1; main)

andi (0.12-3) §

andi

anfo (0.98-6) §

anfo

libanfo0

libanfo0-dev

aragorn (1.2.38-1) §

aragorn

arb (6.0.6-3; non-free) §

arb

arb-common

arb-doc

libarb

libarb-dev

arden (1.0-3) §

arden

ariba (2.12.1+ds-1) §

ariba

art-nextgen-simulation-tools (20160605+dfsg-2) §

art-nextgen-simulation-tools (20160605+dfsg-2+b1; main)

artemis (16.0.17+dfsg-3) §

artemis

artfastqgenerator (0.0.20150519-2) §

artfastqgenerator

artfastqgenerator-doc

artfastqgenerator-examples

assemblytics (0~20170131+ds-2) §

assemblytics

augustus (3.3.1+dfsg-1) §

augustus

autodock-vina (1.1.2-4) §

autodock-vina

autodock-vina-dbgsym

autodocksuite (4.2.6-5) §

autodock

autodock-getdata

autodock-test

autogrid

autogrid-test

autodocktools (1.5.7-3; non-free) §

autodocktools

axe-demultiplexer (0.3.3+dfsg-1) §

axe-demultiplexer

baitfisher (1.0+dfsg-2) §

baitfisher

baitfisher-dbgsym

bali-phy (3.1.5+dfsg-1) §

bali-phy

bali-phy-dbgsym

ball (1.4.3~beta1-3) §

ballview (1.4.3~beta1-3+b1; main)

libball1.4 (1.4.3~beta1-3+b1; main)

libball1.4-doc

libballview1.4 (1.4.3~beta1-3+b1; main)

libballview1.4-dev (1.4.3~beta1-3+b1; main)

python-ball (1.4.3~beta1-3+b1; main)

ball (1.4.3~beta1-4)

ballview

libball1.4

libball1.4-data

libball1.4-dev

libball1.4-doc

libballview1.4

libballview1.4-dev

python-ball

python-ballview

bambamc (0.0.50-1) §

libbambamc-dev

libbambamc0

bamtools (2.4.1+dfsg-2) §

bamtools (2.5.1+dfsg-3)

bamtools

libbamtools-dev

libbamtools-doc

libbamtools2.5.1

barrnap (0.9+dfsg-1) §

barrnap

bart (0.4.03-2) §

bart

libbart-dev

octave-bart

bart-view (0.1.00-1) §

bart-view

bcftools (1.8-1) §

bcftools

beads (1.1.18+dfsg-1) §

beads

beagle (4.1~180127+dfsg-1) §

beast-mcmc (1.8.4+dfsg.1-3) §

beast-mcmc

beast-mcmc-doc

beast-mcmc-examples

libnucleotidelikelihoodcore0

libnucleotidelikelihoodcore0-dbgsym

beast2-mcmc (2.4.4+dfsg-1) §

beast2-mcmc

beast2-mcmc-doc

beast2-mcmc-examples

bedops (2.4.35+dfsg-1) §

bedops

bedops-dbgsym

bedops-doc

bedtools (2.26.0+dfsg-5) §

bedtools

bedtools-dbgsym

bedtools-test

bedtools (2.27.1+dfsg-2)

bedtools

bedtools-dbgsym

bedtools-test

berkeley-express (1.5.2+dfsg-1) §

berkeley-express

berkeley-express-doc

bio-eagle (2.4-1) §

bio-eagle

bio-rainbow (2.0.4-1) §

bio-rainbow (2.0.4-1+b1; main)

bio-tradis (1.3.3+dfsg-3) §

bio-tradis

biococoa (2.2.2-3) §

libbiococoa-dev (2.2.2-3+b1; main)

libbiococoa2 (2.2.2-3+b1; main)

libbiococoa2-dbgsym (2.2.2-3+b1; main)

biojava-live (1:1.7.1-7) §

libbiojava-java

libbiojava-java-demos

libbiojava-java-doc

libbiojava1.7-java

biojava4-live (4.2.11+dfsg-1) §

libbiojava4-java

libbiojava4-java-doc

libbiojava4.0-java

biomaj3 (3.1.4-1) §

python3-biomaj3

biomaj3-cli (3.1.9-1) §

python3-biomaj3-cli

biomaj3-core (3.0.11-2) §

python3-biomaj3-core

biomaj3-daemon (3.0.14-1) §

python3-biomaj3-daemon

biomaj3-download (3.0.14-1) §

python3-biomaj3-download

biomaj3-process (3.0.10-1) §

python3-biomaj3-process

biomaj3-user (3.0.6-1) §

python3-biomaj3-user

biomaj3-zipkin (0.2.2-1) §

python3-biomaj3-zipkin

bioperl (1.7.2-2) §

bioperl

libbio-perl-perl

bioperl-run (1.7.2-3) §

bioperl-run

libbio-perl-run-perl

biosquid (1.9g+cvs20050121-10) §

biosquid

libsquid-dev

libsquid1

biosyntax (0.1~beta4+dfsg-1) §

biosyntax-example

biosyntax-gedit

biosyntax-less

biosyntax-vim

bitseq (0.7.5+dfsg-3) §

bitseq

blasr (5.3+0-2) §

blasr

blimps (3.9-3; non-free) §

blimps-examples

blimps-utils

blimps-utils-dbgsym

libblimps3

libblimps3-dbgsym

libblimps3-dev

bolt-lmm (2.3.2+dfsg-2) §

bolt-lmm

bowtie (1.1.2-6) §

bowtie-examples

bowtie (1.2.2+dfsg-3)

bowtie

bowtie-examples

bowtie2 (2.2.5-2) §

bowtie2 (2.3.4.1-2)

bowtie2

boxshade (3.3.1-11) §

boxshade

bppphyview (0.6.0-1) §

bppphyview

bppsuite (2.4.0-1) §

bppsuite

bppsuite-examples

brig (0.95+dfsg-1) §

brig

bwa (0.7.17-1) §

bwa

cain (1.10+dfsg-2) §

cain

cain-examples

cain-solvers

camitk (4.0.4-2) §

camitk-actionstatemachine (4.0.4-2+b2; main)

camitk-config (4.0.4-2+b2; main)

camitk-imp (4.0.4-2+b2; main)

libcamitk-dev (4.0.4-2+b2; main)

libcamitk4 (4.0.4-2+b2; main)

libcamitk4-data

libcamitk4-doc

libqtpropertybrowser-dev (4.0.4-2+b2; main)

libqtpropertybrowser4 (4.0.4-2+b2; main)

camp (0.8.2-1) §

libcamp-dev

libcamp0.8

canu (1.7+dfsg-1) §

canu

cassiopee (1.0.8-1) §

libcassie-doc

libcassie1v5

cd-hit (4.6.8-1) §

cd-hit

cdbfasta (0.99-20100722-4) §

cdbfasta

centrifuge (1.0.3~beta-1) §

centrifuge (1.0.3-1)

centrifuge

cgview (0.0.20100111-3) §

cgview

charls (1.1.0+dfsg-2) §

libcharls-dev

libcharls1

chromhmm (1.15+dfsg-1) §

chromimpute (1.0.3+dfsg-1) §

ciftilib (1.5.1-3) §

libcifti-dev

libcifti-doc

libcifti0

circlator (1.5.5-1) §

circlator

circos (0.69.6+dfsg-1) §

circos

circos-tools (0.22-2) §

circos-tools

clearcut (1.0.9-2) §

clearcut

clearcut-dbgsym

clonalframe (1.2-8) §

clonalframe

clonalframeml (1.11-1) §

clonalframeml

clonalorigin (1.0-2) §

clonalorigin

clustalo (1.2.4-1) §

clustalo

clustalw (2.1+lgpl-5) §

clustalw

clustalx (2.1+lgpl-6) §

clustalx

cluster3 (1.53-1; non-free) §

cnvkit (0.9.3-1) §

cnvkit

codonw (1.4.4-3) §

codonw (1.4.4-3+b1; main)

coils (2002-6) §

ncoils

concavity (0.1+dfsg.1-1) §

concavity

consensuscore (1.0.2-2) §

python-pbconsensuscore (1.0.2-2+b1; main)

python3-pbconsensuscore (1.0.2-2+b1; main)

conservation-code (20110309.0-6) §

conservation-code

crac (2.5.0+dfsg-2) §

crac

ctdconverter (2.0-4) §

ctdconverter

ctdopts (1.2-3) §

python3-ctdopts

ctn (3.2.0~dfsg-5) §

ctn

ctn-dev

ctsim (6.0.2-2) §

ctsim

ctsim-doc

cufflinks

cwltool (1.0.20180302231433-1) §

cwltool

cycle (0.3.1-13) §

cycle

daligner (1.0+20180108-1) §

daligner

dascrubber (0~20180108-1) §

dascrubber

dawg (1.2-1) §

dawg (1.2-1+b1; main)

dazzdb (1.0+20180115-1) §

dazzdb

dcm2niix (1.0.20171215-1) §

dcm2niix

dcmtk (3.6.1~20160216-4) §

dcmtk-doc

libdcmtk8

dcmtk (3.6.1~20170228-2)

dcmtk-doc

libdcmtk11

dcmtk (3.6.2-3)

dcmtk (3.6.2-3+b1; main)

dcmtk-doc

libdcmtk12 (3.6.2-3+b1; main)

debian-med (3.0.1) §

med-rehabilitation

debian-med (3.1)

med-config

med-epi

med-tasks

deepnano (0.0+git20170813.e8a621e-2) §

deepnano

deepnano-data

dialign (2.2.1-9) §

dialign

dialign-t (1.0.2-11) §

dialign-tx

dialign-tx-data

diamond-aligner (0.9.22+dfsg-1) §

diamond-aligner

dicom3tools (1.00~20180401144051-1) §

dicom3tools

dicompyler (0.4.2.0-1) §

dicompyler

dicomscope (3.6.0-18) §

dicomscope

dicomscope-doc

libdicomscope-jni

dindel (1.01+dfsg-4) §

dindel (1.01+dfsg-4+b1; main)

discosnp (1.2.6-2) §

discosnp

disulfinder (1.2.11-7) §

disulfinder

dnaclust (3-5) §

dnaclust

dssp (3.0.0-2) §

dssp

dwgsim (0.1.12-1) §

dwgsim

e-mem (1.0.1-1) §

e-mem

ea-utils (1.1.2+dfsg-5) §

ea-utils

ecopcr (0.5.0+dfsg-1) §

ecopcr

edfbrowser (1.64+dfsg-1) §

edfbrowser

edflib (1.13-1) §

libedf-dev

libedf1

edtsurf (0.2009-5) §

edtsurf

eigensoft (6.1.4+dfsg-1) §

eigensoft (6.1.4+dfsg-1+b2; main)

elastix (4.8-12) §

elastix (4.8-12+b1; main)

elastix-doc

embassy-domainatrix (0.1.660-2) §

embassy-domainatrix

embassy-domalign (0.1.660-2) §

embassy-domalign

embassy-domsearch (1:0.1.660-2) §

embassy-domsearch

embassy-phylip (3.69.660-2; non-free) §

embassy-phylip

emboss (6.6.0+dfsg-6) §

emboss (6.6.0+dfsg-6+b1; main)

emboss-data

emboss-doc

emboss-lib (6.6.0+dfsg-6+b1; main)

emboss-test

jemboss

emboss-explorer (2.2.0-9) §

emboss-explorer

libemboss-acd-perl

epcr (2.3.12-1-5) §

ncbi-epcr

epigrass (2.4.7-2) §

epigrass

epigrass-doc

examl (3.0.21-1) §

examl

exonerate (2.4.0-3) §

exonerate

falcon (1.8.8-1) §

falcon

fast5 (0.6.5-1) §

fast5

libfast5-dev

python-fast5

python3-fast5

fasta3 (36.3.8g-1; non-free) §

fasta3

fasta3-doc

fastaq (3.17.0-1) §

fastaq

fastdnaml (1.2.2-12) §

fastdnaml

fastlink (4.1P-fix100+dfsg-1+b1; main)

fastlink-dbgsym (4.1P-fix100+dfsg-1+b1; main)

fastlink-doc

fastml (3.1-3) §

fastml

fastqc (0.11.7+dfsg-1) §

fastqtl (2.184+dfsg-5) §

fastqtl (2.184+dfsg-5+b2; main)

fastqtl-doc

fasttree (2.1.10-1) §

fasttree

fastx-toolkit (0.0.14-5) §

fastx-toolkit

fermi-lite (0.1-4) §

fml-asm

libfml-dev

libfml0

ffindex (0.9.9.7-4) §

ffindex (0.9.9.7-4+b1; main)

libffindex0 (0.9.9.7-4+b1; main)

libffindex0-dev (0.9.9.7-4+b1; main)

figtree (1.4.3+dfsg-5) §

figtree

fis-gtm (6.3-003A-2) §

fis-gtm

fis-gtm-6.3-003a (6.3-003A-2+b1; main)

fitgcp (0.0.20150429-1) §

fitgcp

flexbar (1:3.2.0-1) §

flexbar

freebayes (1.2.0-1) §

freebayes

freecontact (1.0.21-6) §

freecontact (1.0.21-6+b1; main)

libfreecontact-doc

libfreecontact0v5 (1.0.21-6+b1; main)

freemedforms-project (0.9.4-2) §

freediams

freediams-doc-en

freediams-doc-fr

freemedforms-common-resources

freemedforms-emr

freemedforms-emr-doc-en

freemedforms-emr-doc-fr

freemedforms-emr-resources

freemedforms-freedata

freemedforms-i18n

freemedforms-libs

freemedforms-project

freemedforms-theme

fsa (1.15.9+dfsg-3) §

fsa

fsm-lite (1.0-2) §

fsm-lite

fw4spl (14.0.0-1) §

fw4spl

g2 (0.72-7) §

libg2-dev

libg20

libg20-perl

galileo (0.5.1-5) §

galileo

galileo-daemon

garli (2.1-2) §

garli

garli-examples

gasic (0.0.r19-3) §

gasic

gatb-core (1.4.1+dfsg-1) §

gatb-core

gatb-core-testdata

libgatbcore-dev

libgatbcore0

gbrowse (2.56+dfsg-3) §

gbrowse

gbrowse-data

gdcm (2.8.6-3) §

gdcm-doc

libgdcm-cil

libgdcm-java

libgdcm-tools

libgdcm2-dev

libgdcm2.8

libvtkgdcm-cil

libvtkgdcm-java

libvtkgdcm-tools

libvtkgdcm2-dev

libvtkgdcm2.8

python-gdcm

python-vtkgdcm

gdcm (2.8.6-3exp1python3)

gdcm-doc

libgdcm-cil

libgdcm-java

libgdcm-tools

libgdcm2-dev

libgdcm2.8

libvtkgdcm-cil

libvtkgdcm-java

libvtkgdcm-tools

libvtkgdcm2-dev

libvtkgdcm2.8

python3-gdcm

python3-vtkgdcm

gdpc (2.2.5-8) §

gdpc

gdpc-examples

gemma (0.97+dfsg-3) §

gemma

gemma-doc

genometester (4.0-1) §

genometester

genometools (1.5.10+ds-2) §

genometools

libgenometools0

gentle (1.9+cvs20100605+dfsg1-6) §

gentle

getdata (0.2-2) §

gfapy (1.0.0+dfsg-2) §

python3-gfapy

gff2aplot (2.0-9) §

gff2aplot

gff2ps (0.98l-1) §

gff2ps

giira (0.0.20140625-1) §

giira

ginkgocadx (3.8.7-1) §

ginkgocadx

glam2 (1064-4) §

glam2

gmap (2017-11-15-1; non-free) §

gmap

libgmap1

gnumed-client (1.7.2+dfsg-1) §

gnumed-client

gnumed-client-de

gnumed-common

gnumed-doc

gnumed-server (22.2-1) §

gnumed-server

golang-github-dataence-porter2 (0.0~git20150829.56e4718-1) §