Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the report showing only errors and warnings. Also see their QA overview.

• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

abacas

• W manpage-has-errors-from-man
  • usr/share/man/man1/abacas.1.gz 20: warning [p 1, 3.0i, div `an-div', 0.0i]: cannot adjust line

• P debian-watch-does-not-check-gpg-signature

abyss

• X binary-file-built-without-LFS-support
  • usr/lib/abyss/KAligner
  • usr/lib/abyss/PathConsensus
  • usr/lib/abyss/abyss-align
• W binary-without-manpage
  • usr/bin/DistanceEst
  • usr/bin/DistanceEst
  • usr/bin/abyss-fixmate
  • usr/bin/abyss-fixmate
• I possible-documentation-but-no-doc-base-registration
• I spelling-error-in-binary
  • usr/lib/abyss/Consensus ommited omitted
  • usr/lib/abyss/Consensus ommited omitted
  • usr/lib/abyss/PathConsensus wether whether
  • usr/lib/abyss/PathConsensus wether whether
  • usr/lib/abyss/SimpleGraph paramter parameter
  • usr/lib/abyss/SimpleGraph paramter parameter
  • usr/lib/abyss/abyss-align wether whether
  • usr/lib/abyss/abyss-align wether whether
  • usr/lib/abyss/abyss-sealer superceded superseded
  • usr/lib/abyss/abyss-sealer superceded superseded
  • usr/lib/abyss/abyss-tofastq ouput output
  • usr/lib/abyss/abyss-tofastq ouput output
  • usr/lib/abyss/konnector superceded superseded
  • usr/lib/abyss/konnector superceded superseded
• I spelling-error-in-manpage
  • usr/share/man/man1/abyss-pe.1.gz varible variable
  • usr/share/man/man1/abyss-pe.1.gz varible variable

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://ftp.sanger.ac.uk/pub/project/acedb/SUPPORTED/ACEDB-source\.([0-9.]+)\.tar\.gz
• P source-contains-empty-directory
  • waction/
  • wdemo/database/
  • wdoc/Interfaces/
  • wemap/
  • whelp/syntax/
  • wsyn/
  • wt1/
• I testsuite-autopkgtest-missing

acedb-other

• X binary-file-built-without-LFS-support
  • usr/bin/efetch
• I hardening-no-fortify-functions
  • usr/bin/efetch
  • usr/bin/efetch

• P debian-watch-does-not-check-gpg-signature

adapterremoval

• X binary-file-built-without-LFS-support
  • usr/bin/AdapterRemoval
• I hardening-no-fortify-functions
  • usr/bin/AdapterRemoval
  • usr/bin/AdapterRemoval
• W manpage-has-errors-from-man
  • usr/share/man/man1/AdapterRemoval.1.gz 232: warning [p 4, 4.3i]: can't break line
  • usr/share/man/man1/AdapterRemoval.1.gz 232: warning [p 4, 4.3i]: can't break line
• W privacy-breach-generic
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)
• I spelling-error-in-binary
  • usr/bin/AdapterRemoval pres press
• I spelling-error-in-manpage
  • usr/share/man/man1/AdapterRemoval.1.gz lenght length
  • usr/share/man/man1/AdapterRemoval.1.gz lenght length
  • usr/share/man/man1/AdapterRemoval.1.gz multipled multiplied
  • usr/share/man/man1/AdapterRemoval.1.gz multipled multiplied

• I debian-rules-contains-unnecessary-get-orig-source-target
• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/adun.app.git
  • vcs-git https://anonscm.debian.org/git/debian-med/adun.app.git

adun-core (0.81-11+b1; main)

• X binary-file-built-without-LFS-support
  • usr/bin/AdunServer
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
  • usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1
  • usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so.0.6
• X shlib-calls-exit
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
  • usr/lib/adun.app/libXMLLib.so.0.1
  • usr/lib/adun.app/libXMLLib.so.0.1
  • usr/lib/adun.app/libadun_base.so.0.0.1
  • usr/lib/adun.app/libadun_base.so.0.0.1
• I spelling-error-in-binary
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 onthe on the
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 onthe on the
  • usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1 CONECT CONNECT
  • usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1 CONECT CONNECT

adun.app (0.81-11+b1; main)

• X binary-file-built-without-LFS-support
  • usr/lib/GNUstep/Applications/UL.app/UL
• I wrong-section-according-to-package-name
  • adun.app => gnustep
  • adun.app => gnustep

• I debian-rules-parses-dpkg-parsechangelog
  • (line 5)
• O debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.2.1)
• P package-uses-deprecated-source-override-location
• P source-contains-empty-directory
  • data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/
  • data/share/vendor/

aegean

• X binary-file-built-without-LFS-support
  • usr/bin/canon-gff3
  • usr/bin/gaeval
  • usr/bin/locuspocus
  • usr/bin/parseval
  • usr/bin/pmrna
  • usr/bin/tidygff3
  • usr/bin/xtractore

• P debian-watch-does-not-check-gpg-signature
• W rc-version-greater-than-expected-version
  • 0.2.2-beta2+git20180219.8787e95 > 0.2.2 (consider using 0.2.2~beta2+git20180219.8787e95)
• I testsuite-autopkgtest-missing

aeskulap

• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/aeskulap.desktop
  • usr/share/applications/aeskulap.desktop
• W rc-version-greater-than-expected-version
  • 0.2.2-beta2+git20180219.8787e95 > 0.2.2 (consider using 0.2.2~beta2+git20180219.8787e95)
  • 0.2.2-beta2+git20180219.8787e95 > 0.2.2 (consider using 0.2.2~beta2+git20180219.8787e95)

aeskulap-dbgsym

• W rc-version-greater-than-expected-version
  • 0.2.2-beta2+git20180219.8787e95 > 0.2.2 (consider using 0.2.2~beta2+git20180219.8787e95)
  • 0.2.2-beta2+git20180219.8787e95 > 0.2.2 (consider using 0.2.2~beta2+git20180219.8787e95)

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.aevol.fr/download/
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-does-not-install-examples
  • examples/
• I testsuite-autopkgtest-missing

aevol (5.0-2+b1; main)

• X binary-file-built-without-LFS-support
  • usr/bin/aevol_create
  • usr/bin/aevol_misc_ancestor_robustness
  • usr/bin/aevol_misc_ancestor_stats
  • usr/bin/aevol_misc_create_eps
  • usr/bin/aevol_misc_extract
  • usr/bin/aevol_misc_lineage
  • usr/bin/aevol_misc_mutagenesis
  • usr/bin/aevol_misc_robustness
  • usr/bin/aevol_misc_view
  • usr/bin/aevol_modify
  • usr/bin/aevol_propagate
  • usr/bin/aevol_run
• W binary-without-manpage
  • usr/bin/aevol_misc_ancestor_robustness
  • usr/bin/aevol_misc_ancestor_robustness
  • usr/bin/aevol_misc_mutagenesis
  • usr/bin/aevol_misc_mutagenesis
• W manpage-has-errors-from-man
  • usr/share/man/man1/aevol_misc_ancestor_stats.1.gz 1: warning: macro `/"test' not defined
  • usr/share/man/man1/aevol_misc_ancestor_stats.1.gz 1: warning: macro `/"test' not defined
  • usr/share/man/man1/aevol_misc_view.1.gz 1: warning: macro `/"test' not defined
  • usr/share/man/man1/aevol_misc_view.1.gz 1: warning: macro `/"test' not defined
• I spelling-error-in-binary
  • usr/bin/aevol_create alignement alignment
  • usr/bin/aevol_create alignement alignment
  • usr/bin/aevol_create coul could
  • usr/bin/aevol_create occured occurred
  • usr/bin/aevol_create occured occurred
  • usr/bin/aevol_create paramater parameter
  • usr/bin/aevol_create paramater parameter
  • usr/bin/aevol_create recepient recipient
  • usr/bin/aevol_create recepient recipient
  • usr/bin/aevol_misc_ancestor_robustness alignement alignment
  • usr/bin/aevol_misc_ancestor_robustness alignement alignment
  • usr/bin/aevol_misc_ancestor_robustness coul could
  • usr/bin/aevol_misc_ancestor_robustness occured occurred
  • usr/bin/aevol_misc_ancestor_robustness occured occurred
  • usr/bin/aevol_misc_ancestor_robustness paramater parameter
  • usr/bin/aevol_misc_ancestor_robustness paramater parameter
  • usr/bin/aevol_misc_ancestor_robustness recepient recipient
  • usr/bin/aevol_misc_ancestor_robustness recepient recipient
  • usr/bin/aevol_misc_ancestor_stats alignement alignment
  • usr/bin/aevol_misc_ancestor_stats alignement alignment
  • usr/bin/aevol_misc_ancestor_stats coul could
  • usr/bin/aevol_misc_ancestor_stats occured occurred
  • usr/bin/aevol_misc_ancestor_stats occured occurred
  • usr/bin/aevol_misc_ancestor_stats paramater parameter
  • usr/bin/aevol_misc_ancestor_stats paramater parameter
  • usr/bin/aevol_misc_ancestor_stats recepient recipient
  • usr/bin/aevol_misc_ancestor_stats recepient recipient
  • usr/bin/aevol_misc_create_eps alignement alignment
  • usr/bin/aevol_misc_create_eps alignement alignment
  • usr/bin/aevol_misc_create_eps coul could
  • usr/bin/aevol_misc_create_eps occured occurred
  • usr/bin/aevol_misc_create_eps occured occurred
  • usr/bin/aevol_misc_create_eps paramater parameter
  • usr/bin/aevol_misc_create_eps paramater parameter
  • usr/bin/aevol_misc_create_eps recepient recipient
  • usr/bin/aevol_misc_create_eps recepient recipient
  • usr/bin/aevol_misc_extract alignement alignment
  • usr/bin/aevol_misc_extract alignement alignment
  • usr/bin/aevol_misc_extract coul could
  • usr/bin/aevol_misc_extract occured occurred
  • usr/bin/aevol_misc_extract occured occurred
  • usr/bin/aevol_misc_extract paramater parameter
  • usr/bin/aevol_misc_extract paramater parameter
  • usr/bin/aevol_misc_extract recepient recipient
  • usr/bin/aevol_misc_extract recepient recipient
  • usr/bin/aevol_misc_lineage alignement alignment
  • usr/bin/aevol_misc_lineage alignement alignment
  • usr/bin/aevol_misc_lineage coul could
  • usr/bin/aevol_misc_lineage occured occurred
  • usr/bin/aevol_misc_lineage occured occurred
  • usr/bin/aevol_misc_lineage paramater parameter
  • usr/bin/aevol_misc_lineage paramater parameter
  • usr/bin/aevol_misc_lineage recepient recipient
  • usr/bin/aevol_misc_lineage recepient recipient
  • usr/bin/aevol_misc_mutagenesis alignement alignment
  • usr/bin/aevol_misc_mutagenesis alignement alignment
  • usr/bin/aevol_misc_mutagenesis coul could
  • usr/bin/aevol_misc_mutagenesis occured occurred
  • usr/bin/aevol_misc_mutagenesis occured occurred
  • usr/bin/aevol_misc_mutagenesis paramater parameter
  • usr/bin/aevol_misc_mutagenesis paramater parameter
  • usr/bin/aevol_misc_mutagenesis recepient recipient
  • usr/bin/aevol_misc_mutagenesis recepient recipient
  • usr/bin/aevol_misc_robustness alignement alignment
  • usr/bin/aevol_misc_robustness alignement alignment
  • usr/bin/aevol_misc_robustness coul could
  • usr/bin/aevol_misc_robustness occured occurred
  • usr/bin/aevol_misc_robustness occured occurred
  • usr/bin/aevol_misc_robustness paramater parameter
  • usr/bin/aevol_misc_robustness paramater parameter
  • usr/bin/aevol_misc_robustness recepient recipient
  • usr/bin/aevol_misc_robustness recepient recipient
  • usr/bin/aevol_misc_view alignement alignment
  • usr/bin/aevol_misc_view alignement alignment
  • usr/bin/aevol_misc_view coul could
  • usr/bin/aevol_misc_view occured occurred
  • usr/bin/aevol_misc_view occured occurred
  • usr/bin/aevol_misc_view paramater parameter
  • usr/bin/aevol_misc_view paramater parameter
  • usr/bin/aevol_misc_view recepient recipient
  • usr/bin/aevol_misc_view recepient recipient
  • usr/bin/aevol_modify alignement alignment
  • usr/bin/aevol_modify alignement alignment
  • usr/bin/aevol_modify coul could
  • usr/bin/aevol_modify modifed modified
  • usr/bin/aevol_modify modifed modified
  • usr/bin/aevol_modify occured occurred
  • usr/bin/aevol_modify occured occurred
  • usr/bin/aevol_modify paramater parameter
  • usr/bin/aevol_modify paramater parameter
  • usr/bin/aevol_modify recepient recipient
  • usr/bin/aevol_modify recepient recipient
  • usr/bin/aevol_propagate alignement alignment
  • usr/bin/aevol_propagate alignement alignment
  • usr/bin/aevol_propagate coul could
  • usr/bin/aevol_propagate occured occurred
  • usr/bin/aevol_propagate occured occurred
  • usr/bin/aevol_propagate paramater parameter
  • usr/bin/aevol_propagate paramater parameter
  • usr/bin/aevol_propagate recepient recipient
  • usr/bin/aevol_propagate recepient recipient
  • usr/bin/aevol_run alignement alignment
  • usr/bin/aevol_run alignement alignment
  • usr/bin/aevol_run coul could
  • usr/bin/aevol_run occured occurred
  • usr/bin/aevol_run occured occurred
  • usr/bin/aevol_run paramater parameter
  • usr/bin/aevol_run paramater parameter
  • usr/bin/aevol_run recepient recipient
  • usr/bin/aevol_run recepient recipient

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://johnhommer.com/academic/code/aghermann/source/aghermann-([\d\.]+).tar.xz
• P source-contains-empty-directory
  • m4/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

aghermann

• X binary-file-built-without-LFS-support
  • usr/bin/agh-profile-gen
  • usr/bin/aghermann
  • usr/bin/edfcat
  • usr/bin/edfhed
  • usr/bin/edfhed-gtk
  • usr/lib/i386-linux-gnu/aghermann/libmetrics.so
  • usr/lib/i386-linux-gnu/aghermann/libsigfile.so
• I hardening-no-bindnow
  • usr/bin/agh-profile-gen
  • usr/bin/agh-profile-gen
  • usr/bin/aghermann
  • usr/bin/aghermann
  • usr/bin/edfcat
  • usr/bin/edfcat
  • usr/bin/edfhed
  • usr/bin/edfhed
  • usr/bin/edfhed-gtk
  • usr/bin/edfhed-gtk
  • usr/lib/i386-linux-gnu/aghermann/libmetrics.so
  • usr/lib/i386-linux-gnu/aghermann/libsigfile.so
  • usr/lib/i386-linux-gnu/aghermann/libsigproc.so
  • usr/lib/x86_64-linux-gnu/aghermann/libmetrics.so
  • usr/lib/x86_64-linux-gnu/aghermann/libsigfile.so
  • usr/lib/x86_64-linux-gnu/aghermann/libsigproc.so
• I spelling-error-in-binary
  • usr/bin/aghermann unintialized uninitialized
  • usr/bin/aghermann unintialized uninitialized
  • usr/lib/i386-linux-gnu/aghermann/libsigproc.so Unitialized Uninitialized

• P debian-watch-does-not-check-gpg-signature

alien-hunter

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• W package-installs-java-bytecode
  • usr/share/alien_hunter/ChangepointLeft$1.class
  • usr/share/alien_hunter/ChangepointLeft.class
  • usr/share/alien_hunter/ChangepointRight$1.class
  • usr/share/alien_hunter/ChangepointRight.class

• P debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 132)
  • debian/changelog (line 134)
  • debian/changelog (line 244)
  • debian/changelog (line 58)
• I testsuite-autopkgtest-missing

altree (1.3.1-7+b1; main)

• I hardening-no-bindnow
  • usr/lib/i386-linux-gnu/perl5/5.28/auto/ALTree/CUtils/CUtils.so
  • usr/lib/x86_64-linux-gnu/perl5/5.28/auto/ALTree/CUtils/CUtils.so
• I spelling-error-in-manpage
  • usr/share/man/man1/altree.1p.gz allows to allows one to
  • usr/share/man/man1/altree.1p.gz allows to allows one to

altree-examples

• X duplicate-files
  • usr/share/doc/altree-examples/create_file/phy-paml_file/NUM usr/share/doc/altree-examples/create_file/phy-paml_file/nb_cas_control.txt usr/share/doc/altree-examples/paml/unrooted_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/phylip/ancestor_absent/association/nb_cas_controls.txt usr/share/doc/altree-examples/phylip/outgroup_absent/association/nb_cas_controls.txt
  • usr/share/doc/altree-examples/create_file/phy-paml_file/trio.phy usr/share/doc/altree-examples/create_file/phy-paml_file/trio.prephy
  • usr/share/doc/altree-examples/paml/tree_building_using_phyML/trio2.phy usr/share/doc/altree-examples/paml/unrooted_absent/association/trio2.phy usr/share/doc/altree-examples/paml/unrooted_present/association/trio2.phy usr/share/doc/altree-examples/paml/unrooted_present/localisation/trio2.phy
  • usr/share/doc/altree-examples/paml/tree_building_using_phyML/trio2.phy_phyml_tree.txt usr/share/doc/altree-examples/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt usr/share/doc/altree-examples/paml/unrooted_present/association/trio2.phy_phyml_tree.txt usr/share/doc/altree-examples/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt
  • usr/share/doc/altree-examples/paml/unrooted_absent/association/baseml.ctl usr/share/doc/altree-examples/paml/unrooted_present/association/baseml.ctl
  • usr/share/doc/altree-examples/paml/unrooted_absent/association/rst1 usr/share/doc/altree-examples/paml/unrooted_present/association/rst1 usr/share/doc/altree-examples/paml/unrooted_present/localisation/rst1
  • usr/share/doc/altree-examples/paml/unrooted_present/association/nb_cas_control.txt usr/share/doc/altree-examples/paml/unrooted_present/localisation/nb_cas_controls.txt
  • usr/share/doc/altree-examples/paup/ancestor_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/ancestor_absent/localisation/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_absent/localisation/nb_cas_control.txt usr/share/doc/altree-examples/paup/unrooted_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/unrooted_absent/localisation/nb_cas_control.txt
  • usr/share/doc/altree-examples/paup/ancestor_present/association/caco.paup usr/share/doc/altree-examples/paup/ancestor_present/localisation/caco.paup
  • usr/share/doc/altree-examples/paup/ancestor_present/localisation/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_present/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_present/localisation/nb_cas_control.txt
  • usr/share/doc/altree-examples/paup/outgr_absent/association/caco.paup usr/share/doc/altree-examples/paup/outgr_absent/localisation/caco.paup usr/share/doc/altree-examples/paup/outgr_present/association/caco.paup usr/share/doc/altree-examples/paup/outgr_present/localisation/caco.paup
  • usr/share/doc/altree-examples/paup/outgr_absent/localisation/caco.loc usr/share/doc/altree-examples/paup/outgr_present/localisation/caco.loc
  • usr/share/doc/altree-examples/paup/unrooted_present/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/unrooted_present/localisation/nb_cas_control.txt
  • usr/share/doc/altree-examples/phylip/outgroup_absent/association/outfile.gz usr/share/doc/altree-examples/phylip/outgroup_present/association/outfile.gz
  • usr/share/doc/altree-examples/phylip/outgroup_absent/association/outtree.gz usr/share/doc/altree-examples/phylip/outgroup_present/association/outtree.gz
  • usr/share/doc/altree-examples/phylip/outgroup_absent/association/trio.phy usr/share/doc/altree-examples/phylip/outgroup_present/association/trio.phy

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 149)

amap-align

• X binary-file-built-without-LFS-support
  • usr/bin/amap
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
  • usr/share/common-licenses/GPL
• I hardening-no-fortify-functions
  • usr/bin/amap
  • usr/bin/amap

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 148)
  • debian/changelog (line 29)
  • debian/changelog (line 293)
  • debian/changelog (line 38)
  • debian/changelog (line 40)
  • debian/changelog (line 41)
  • debian/changelog (line 42)
  • debian/changelog (line 50)
  • debian/changelog (line 75)
  • debian/changelog (line 84)
  • debian/changelog (line 85)
  • debian/control (line 4)
• P source-contains-empty-directory
  • doc/reference/tmpl/
• I testsuite-autopkgtest-missing
• P wiki-copyright-format-uri
  • http://wiki.debian.org/Proposals/CopyrightFormat

amide

• X binary-file-built-without-LFS-support
  • usr/bin/amide
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GFDL
  • usr/share/common-licenses/GFDL
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/amide.desktop
  • usr/share/applications/amide.desktop
• I spelling-error-in-binary
  • usr/bin/amide caculate calculate
  • usr/bin/amide caculate calculate
  • usr/bin/amide discontinous discontinuous
  • usr/bin/amide discontinous discontinuous
  • usr/bin/amide reseting resetting
  • usr/bin/amide reseting resetting

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 111)
  • debian/changelog (line 186)
  • debian/changelog (line 191)
  • debian/rules (line 37)
• P source-contains-empty-directory
  • bin/
• I testsuite-autopkgtest-missing

ampliconnoise

• X binary-file-built-without-LFS-support
  • usr/bin/FCluster
  • usr/bin/FastaUnique
  • usr/bin/NDist
  • usr/bin/Perseus
  • usr/bin/PerseusD
  • usr/bin/PyroDist
  • usr/bin/PyroNoise
  • usr/bin/PyroNoiseA
  • usr/bin/PyroNoiseM
  • usr/bin/SeqDist
  • usr/bin/SeqNoise
  • usr/bin/SplitClusterClust
  • usr/bin/SplitClusterEven
• I hardening-no-fortify-functions
  • usr/bin/FCluster
  • usr/bin/FCluster
  • usr/bin/FastaUnique
  • usr/bin/FastaUnique
  • usr/bin/NDist
  • usr/bin/NDist
  • usr/bin/Perseus
  • usr/bin/Perseus
  • usr/bin/PerseusD
  • usr/bin/PerseusD
  • usr/bin/PyroDist
  • usr/bin/PyroDist
  • usr/bin/PyroNoise
  • usr/bin/PyroNoise
  • usr/bin/PyroNoiseA
  • usr/bin/PyroNoiseA
  • usr/bin/PyroNoiseM
  • usr/bin/PyroNoiseM
  • usr/bin/SeqDist
  • usr/bin/SeqDist
  • usr/bin/SeqNoise
  • usr/bin/SeqNoise
  • usr/bin/SplitClusterClust
  • usr/bin/SplitClusterClust
  • usr/bin/SplitClusterEven
  • usr/bin/SplitClusterEven

ampliconnoise-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/1d/02c5065511784c6f83d548dc53f7aa46f9dffa.debug
  • usr/lib/debug/.build-id/94/29e99411a34a807f13179d30280fcd2ca002b3.debug

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 97)
• I testsuite-autopkgtest-missing

andi

• X binary-file-built-without-LFS-support
  • usr/bin/andi
• I spelling-error-in-binary
  • usr/bin/andi exlusive exclusive
  • usr/bin/andi exlusive exclusive

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bioinf.eva.mpg.de/anfo/
• P file-contains-trailing-whitespace
  • debian/changelog (line 73)
• I testsuite-autopkgtest-missing

anfo

• I spelling-error-in-manpage
  • usr/share/man/man1/anfo-tool.1.gz choosen chosen
  • usr/share/man/man1/anfo-tool.1.gz choosen chosen
  • usr/share/man/man1/anfo-tool.1.gz occuring occurring
  • usr/share/man/man1/anfo-tool.1.gz occuring occurring
  • usr/share/man/man1/anfo-tool.1.gz representaion representation
  • usr/share/man/man1/anfo-tool.1.gz representaion representation
  • usr/share/man/man1/anfo.1.gz optinally optionally
  • usr/share/man/man1/anfo.1.gz optinally optionally

libanfo0

• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libanfo.so.0.0.0
  • usr/lib/x86_64-linux-gnu/libanfo.so.0.0.0
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libanfo.so.0.0.0
  • usr/lib/x86_64-linux-gnu/libanfo.so.0.0.0

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/aragorn(.*).tgz
• P file-contains-trailing-whitespace
  • debian/changelog (line 68)
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.2.1)

aragorn

• X binary-file-built-without-LFS-support
  • usr/bin/aragorn

• I debian-rules-parses-dpkg-parsechangelog
  • (line 9)
• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://download.arb-home.de/release/
• P file-contains-trailing-whitespace
  • debian/changelog (line 123)
  • debian/changelog (line 129)
  • debian/changelog (line 174)
  • debian/changelog (line 282)
  • debian/changelog (line 53)
  • debian/changelog (line 725)
  • debian/changelog (line 88)
  • debian/changelog (line 91)
  • debian/rules (line 117)
  • debian/rules (line 4)
  • debian/rules (line 97)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• X maybe-not-arch-all-binnmuable
  • arb -> arb-common
• I missing-explanation-for-contrib-or-non-free-package
• I testsuite-autopkgtest-missing

arb

• I hardening-no-bindnow
  • usr/lib/arb/bin/CAP2
  • usr/lib/arb/bin/CAP2
  • usr/lib/arb/bin/Restriction
  • usr/lib/arb/bin/Restriction
  • usr/lib/arb/bin/Zuk_to_gen
  • usr/lib/arb/bin/Zuk_to_gen
  • usr/lib/arb/bin/arb_2_ascii
  • usr/lib/arb/bin/arb_2_ascii
  • usr/lib/arb/bin/arb_2_bin
  • usr/lib/arb/bin/arb_2_bin
  • usr/lib/arb/bin/arb_a2ps
  • usr/lib/arb/bin/arb_a2ps
  • usr/lib/arb/bin/arb_consensus_tree
  • usr/lib/arb/bin/arb_consensus_tree
  • usr/lib/arb/bin/arb_convert_aln
  • usr/lib/arb/bin/arb_convert_aln
  • usr/lib/arb/bin/arb_db_server
  • usr/lib/arb/bin/arb_db_server
  • usr/lib/arb/bin/arb_dist
  • usr/lib/arb/bin/arb_dist
  • usr/lib/arb/bin/arb_dnarates
  • usr/lib/arb/bin/arb_dnarates
  • usr/lib/arb/bin/arb_edit4
  • usr/lib/arb/bin/arb_edit4
  • usr/lib/arb/bin/arb_export_rates
  • usr/lib/arb/bin/arb_export_rates
  • usr/lib/arb/bin/arb_export_tree
  • usr/lib/arb/bin/arb_export_tree
  • usr/lib/arb/bin/arb_flush_mem
  • usr/lib/arb/bin/arb_flush_mem
  • usr/lib/arb/bin/arb_gene_probe
  • usr/lib/arb/bin/arb_gene_probe
  • usr/lib/arb/bin/arb_help2xml
  • usr/lib/arb/bin/arb_help2xml
  • usr/lib/arb/bin/arb_message
  • usr/lib/arb/bin/arb_message
  • usr/lib/arb/bin/arb_naligner
  • usr/lib/arb/bin/arb_naligner
  • usr/lib/arb/bin/arb_name_server
  • usr/lib/arb/bin/arb_name_server
  • usr/lib/arb/bin/arb_notify
  • usr/lib/arb/bin/arb_notify
  • usr/lib/arb/bin/arb_ntree
  • usr/lib/arb/bin/arb_ntree
  • usr/lib/arb/bin/arb_pars
  • usr/lib/arb/bin/arb_pars
  • usr/lib/arb/bin/arb_phylo
  • usr/lib/arb/bin/arb_phylo
  • usr/lib/arb/bin/arb_primer
  • usr/lib/arb/bin/arb_primer
  • usr/lib/arb/bin/arb_probe
  • usr/lib/arb/bin/arb_probe
  • usr/lib/arb/bin/arb_proto_2_xsub
  • usr/lib/arb/bin/arb_proto_2_xsub
  • usr/lib/arb/bin/arb_pt_server
  • usr/lib/arb/bin/arb_pt_server
  • usr/lib/arb/bin/arb_read_tree
  • usr/lib/arb/bin/arb_read_tree
  • usr/lib/arb/bin/arb_replace
  • usr/lib/arb/bin/arb_replace
  • usr/lib/arb/bin/arb_rnacma
  • usr/lib/arb/bin/arb_rnacma
  • usr/lib/arb/bin/arb_treegen
  • usr/lib/arb/bin/arb_treegen
  • usr/lib/arb/bin/arb_wetc
  • usr/lib/arb/bin/arb_wetc
  • usr/lib/arb/bin/axml
  • usr/lib/arb/bin/axml
  • usr/lib/arb/bin/clustalv
  • usr/lib/arb/bin/clustalv
  • usr/lib/arb/bin/count
  • usr/lib/arb/bin/count
  • usr/lib/arb/bin/findall
  • usr/lib/arb/bin/findall
  • usr/lib/arb/bin/lsadt
  • usr/lib/arb/bin/lsadt
  • usr/lib/arb/bin/sho_helix
  • usr/lib/arb/bin/sho_helix
  • usr/lib/arb/bin/varpos
  • usr/lib/arb/bin/varpos
• I hardening-no-fortify-functions
  • usr/lib/arb/bin/CAP2
  • usr/lib/arb/bin/CAP2
  • usr/lib/arb/bin/Restriction
  • usr/lib/arb/bin/Restriction
  • usr/lib/arb/bin/Zuk_to_gen
  • usr/lib/arb/bin/Zuk_to_gen
  • usr/lib/arb/bin/arb_a2ps
  • usr/lib/arb/bin/arb_a2ps
  • usr/lib/arb/bin/arb_treegen
  • usr/lib/arb/bin/arb_treegen
  • usr/lib/arb/bin/axml
  • usr/lib/arb/bin/axml
  • usr/lib/arb/bin/clustalv
  • usr/lib/arb/bin/clustalv
  • usr/lib/arb/bin/count
  • usr/lib/arb/bin/count
  • usr/lib/arb/bin/findall
  • usr/lib/arb/bin/findall
  • usr/lib/arb/bin/lsadt
  • usr/lib/arb/bin/lsadt
  • usr/lib/arb/bin/sho_helix
  • usr/lib/arb/bin/sho_helix
  • usr/lib/arb/bin/varpos
  • usr/lib/arb/bin/varpos
• I spelling-error-in-binary
  • usr/lib/arb/bin/arb_consensus_tree lengH length
  • usr/lib/arb/bin/arb_db_server doesnt doesn't
  • usr/lib/arb/bin/arb_db_server doesnt doesn't
  • usr/lib/arb/bin/arb_dist doesnt doesn't
  • usr/lib/arb/bin/arb_dist doesnt doesn't
  • usr/lib/arb/bin/arb_edit4 Wont Won't
  • usr/lib/arb/bin/arb_edit4 Wont Won't
  • usr/lib/arb/bin/arb_edit4 doesnt doesn't
  • usr/lib/arb/bin/arb_edit4 doesnt doesn't
  • usr/lib/arb/bin/arb_export_tree lengH length
  • usr/lib/arb/bin/arb_naligner aligne align
  • usr/lib/arb/bin/arb_naligner aligne align
  • usr/lib/arb/bin/arb_naligner doesnt doesn't
  • usr/lib/arb/bin/arb_naligner doesnt doesn't
  • usr/lib/arb/bin/arb_naligner enought enough
  • usr/lib/arb/bin/arb_naligner enought enough
  • usr/lib/arb/bin/arb_name_server doesnt doesn't
  • usr/lib/arb/bin/arb_name_server doesnt doesn't
  • usr/lib/arb/bin/arb_ntree Likelyhood Likelihood
  • usr/lib/arb/bin/arb_ntree Likelyhood Likelihood
  • usr/lib/arb/bin/arb_ntree Mor More
  • usr/lib/arb/bin/arb_ntree Mor More
  • usr/lib/arb/bin/arb_ntree doesnt doesn't
  • usr/lib/arb/bin/arb_ntree doesnt doesn't
  • usr/lib/arb/bin/arb_ntree lengH length
  • usr/lib/arb/bin/arb_ntree pres press
  • usr/lib/arb/bin/arb_pars doesnt doesn't
  • usr/lib/arb/bin/arb_pars doesnt doesn't
  • usr/lib/arb/bin/arb_probe doesnt doesn't
  • usr/lib/arb/bin/arb_probe doesnt doesn't
  • usr/lib/arb/bin/arb_pt_server doesnt doesn't
  • usr/lib/arb/bin/arb_pt_server doesnt doesn't
• I spelling-error-in-copyright
  • explicite explicit
  • explicite explicit
  • wont won't
  • wont won't

arb-common

• W duplicate-changelog-files
  • usr/share/doc/arb-common/arb_CHANGES.txt.gz usr/share/doc/arb-common/changelog.gz usr/share/doc/arb/arb_CHANGES.txt.gz
• X duplicate-files
  • usr/share/doc/arb-common/arb_LICENSE.txt.gz usr/share/doc/arb/arb_LICENSE.txt.gz
  • usr/share/doc/arb-common/arb_README.txt.gz usr/share/doc/arb/arb_README.txt.gz
  • usr/share/doc/arb-common/examples/demo.arb.gz usr/share/doc/arb/examples/demo.arb.gz
• I package-contains-documentation-outside-usr-share-doc
  • usr/lib/arb/PERL_SCRIPTS/BIOPERL/README
  • usr/lib/arb/SH/README
  • usr/share/arb/motifHack/README
• I spelling-error-in-copyright
  • explicite explicit
  • wont won't
• I unused-override
  • package-contains-timestamped-gzip usr/lib/arb/lib/help/*.gz

arb-doc

• I spelling-error-in-copyright
  • explicite explicit
  • wont won't

libarb

• I hardening-no-bindnow
  • usr/lib/arb/lib/ARB.so
  • usr/lib/arb/lib/ARB.so
  • usr/lib/arb/lib/libARBDB.so
  • usr/lib/arb/lib/libARBDB.so
  • usr/lib/arb/lib/libAWT.so
  • usr/lib/arb/lib/libAWT.so
  • usr/lib/arb/lib/libCORE.so
  • usr/lib/arb/lib/libCORE.so
  • usr/lib/arb/lib/libWINDOW.so
  • usr/lib/arb/lib/libWINDOW.so
• I spelling-error-in-binary
  • usr/lib/arb/lib/libARBDB.so colums columns
  • usr/lib/arb/lib/libARBDB.so colums columns
• I spelling-error-in-copyright
  • explicite explicit
  • explicite explicit
  • wont won't
  • wont won't

libarb-dev

• I spelling-error-in-binary
  • usr/lib/arb/SL/TREE_WRITE/TREE_WRITE.a lengH length
• I spelling-error-in-copyright
  • explicite explicit
  • explicite explicit
  • wont won't
  • wont won't

• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

arden

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• X duplicate-files
  • usr/share/doc/arden/html/frames.html usr/share/doc/arden/html/index.html

• P debian-watch-does-not-check-gpg-signature

ariba (2.13.1+ds-1+b1; main)

• W package-contains-timestamped-gzip
  • usr/lib/python3/dist-packages/ariba/tb_data/NC_000962.3.fa.gz

• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

art-nextgen-simulation-tools

• I spelling-error-in-binary
  • usr/bin/art_454 unreconized unrecognized
  • usr/bin/art_454 unreconized unrecognized
  • usr/bin/art_SOLiD lenght length
  • usr/bin/art_SOLiD lenght length
  • usr/bin/art_SOLiD unreconized unrecognized
  • usr/bin/art_SOLiD unreconized unrecognized

art-nextgen-simulation-tools-profiles

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/art-nextgen-simulation-tools/ART_profiler_454/README
  • usr/share/art-nextgen-simulation-tools/ART_profiler_illumina/README

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 44)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-prebuilt-java-object
  • test/cobertura-lib/asm-6.0.jar
  • test/cobertura-lib/asm-analysis-6.0.jar
  • test/cobertura-lib/asm-commons-6.0.jar
  • test/cobertura-lib/asm-tree-6.0.jar
  • test/cobertura-lib/asm-util-6.0.jar
  • test/cobertura-lib/asm-xml-6.0.jar
  • test/cobertura-lib/cobertura-2.1.1.jar
  • test/cobertura-lib/commons-lang3-3.3.2.jar
  • test/cobertura-lib/hamcrest-core-1.3.jar
  • test/cobertura-lib/jaxen-1.1.4.jar
  • test/cobertura-lib/jetty-6.1.14.jar
  • test/cobertura-lib/jetty-util-6.1.14.jar
  • test/cobertura-lib/junit-4.11.jar
  • test/cobertura-lib/logback-classic-1.0.13.jar
  • test/cobertura-lib/logback-core-1.0.13.jar
  • test/cobertura-lib/oro-2.0.8.jar
  • test/cobertura-lib/servlet-api-2.5-6.1.14.jar
  • test/cobertura-lib/slf4j-api-1.7.5.jar
  • test/evosuite-lib/evosuite-1.0.5.jar
  • test/evosuite-lib/evosuite-standalone-runtime-1.0.5.jar
  • test/evosuite-lib/logback-classic-1.1.3.jar
  • test/evosuite-lib/slf4j-api-1.7.22.jar
  • test/jacoco-lib/jacocoagent.jar
  • test/jacoco-lib/jacocoant.jar
• I testsuite-autopkgtest-missing

• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

• I debian-watch-file-is-missing
• I testsuite-autopkgtest-missing
• I vcs-field-not-canonical
  • https://salsa.debian.org/med-team/assemblytics.git https://salsa.debian.org/med-team/assemblytics

assemblytics

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• P debian-watch-does-not-check-gpg-signature
• P package-does-not-install-examples
  • auxprogs/homGeneMapping/examples/
  • examples/

augustus

• I hardening-no-fortify-functions
  • usr/bin/fastBlockSearch
  • usr/bin/homGeneMapping
  • usr/bin/joingenes
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/augustus/scripts/README.autoAug
• I spelling-error-in-binary
  • usr/bin/bam2wig Allows to Allows one to
  • usr/bin/compileSpliceCands Dont Don't
  • usr/bin/compileSpliceCands arround around
  • usr/bin/joingenes noone no one
• I spelling-error-in-manpage
  • usr/share/man/man1/bam2hints.1.gz separeted separated
  • usr/share/man/man1/bam2wig.1.gz Allows to Allows one to
  • usr/share/man/man1/homGeneMapping.1.gz direcory directory

augustus-data

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/augustus/config/species/ancylostoma_ceylanicum/README.TXT
  • usr/share/augustus/config/species/camponotus_floridanus/README.TXT
  • usr/share/augustus/config/species/chicken/README.TXT
  • usr/share/augustus/config/species/ciona/README.TXT
  • usr/share/augustus/config/species/human/README.TXT
  • usr/share/augustus/config/species/mnemiopsis_leidyi/README.TXT
  • usr/share/augustus/config/species/nematostella_vectensis/README.TXT
  • usr/share/augustus/config/species/pneumocystis/README.TXT
  • usr/share/augustus/config/species/rice/README.TXT
  • usr/share/augustus/config/species/s_aureus/README.TXT
  • usr/share/augustus/config/species/schistosoma2/README.TXT
  • usr/share/augustus/config/species/strongylocentrotus_purpuratus/README.TXT
  • usr/share/augustus/config/species/wheat/README.txt
  • usr/share/augustus/config/species/zebrafish/README.TXT

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://vina.scripps.edu/download.html
• P unversioned-copyright-format-uri
  • http://dep.debian.net/deps/dep5/

autodock-vina (1.1.2-5+b1; main)

• P debian-changelog-line-too-short
  • DEP5 (line 15)
  • DEP5 (line 15)
• I hardening-no-fortify-functions
  • usr/bin/vina
  • usr/bin/vina
• I spelling-error-in-binary
  • usr/bin/vina inconsisent inconsistent
  • usr/bin/vina inconsisent inconsistent

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-2-download-page/
• P file-contains-trailing-whitespace
  • debian/changelog (line 178)
  • debian/changelog (line 211)
  • debian/changelog (line 260)
  • debian/control (line 83)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • autodock/Tests/AutoDockTools/

autodock

• X binary-file-built-without-LFS-support
  • usr/bin/autodock4
• I spelling-error-in-binary
  • usr/bin/autodock4 conect connect
  • usr/bin/autodock4 conect connect
• I spelling-error-in-manpage
  • usr/share/man/man1/autodock4.1.gz perfoms performs
  • usr/share/man/man1/autodock4.1.gz perfoms performs

autogrid

• X binary-file-built-without-LFS-support
  • usr/bin/autogrid4

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://mgltools.scripps.edu/downloads/.*mgltools_source_([0-9.]+)\.tar\.gz
• P no-dep5-copyright
• I testsuite-autopkgtest-missing

autodocktools

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

axe-demultiplexer

• X binary-file-built-without-LFS-support
  • usr/bin/axe-demux
• I spelling-error-in-binary
  • usr/bin/axe-demux confict conflict
  • usr/bin/axe-demux confict conflict
• I spelling-error-in-manpage
  • usr/share/man/man1/axe-demux.1.gz confict conflict
  • usr/share/man/man1/axe-demux.1.gz confict conflict

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 39)
  • debian/rules (line 22)
• I quilt-patch-missing-description
  • fix_example.patch
• I testsuite-autopkgtest-missing

baitfisher

• X binary-file-built-without-LFS-support
  • usr/bin/BaitFisher
• W manpage-has-useless-whatis-entry
  • usr/share/man/man1/BaitFilter.1.gz
  • usr/share/man/man1/BaitFilter.1.gz
  • usr/share/man/man1/BaitFisher.1.gz
  • usr/share/man/man1/BaitFisher.1.gz
• I spelling-error-in-binary
  • usr/bin/BaitFilter FEATUE FEATURE
  • usr/bin/BaitFilter FEATUE FEATURE
  • usr/bin/BaitFilter allows to allows one to
  • usr/bin/BaitFilter allows to allows one to
• I spelling-error-in-manpage
  • usr/share/man/man1/BaitFilter.1.gz allows to allows one to
  • usr/share/man/man1/BaitFilter.1.gz allows to allows one to

• P debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.1.5 (released 2018-07-04) (current is 4.2.1)

bali-phy (3.3+dfsg-1+b1; main)

• X duplicate-files
  • usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta
  • usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/alignment-cat.1.gz
  • usr/share/man/man1/alignment-cat.1.gz
  • usr/share/man/man1/alignment-chop-internal.1.gz
  • usr/share/man/man1/alignment-chop-internal.1.gz
  • usr/share/man/man1/alignment-consensus.1.gz
  • usr/share/man/man1/alignment-consensus.1.gz
  • usr/share/man/man1/alignment-draw.1.gz
  • usr/share/man/man1/alignment-draw.1.gz
  • usr/share/man/man1/alignment-find.1.gz
  • usr/share/man/man1/alignment-find.1.gz
  • usr/share/man/man1/alignment-gild.1.gz
  • usr/share/man/man1/alignment-gild.1.gz
  • usr/share/man/man1/alignment-indices.1.gz
  • usr/share/man/man1/alignment-indices.1.gz
  • usr/share/man/man1/alignment-info.1.gz
  • usr/share/man/man1/alignment-info.1.gz
  • usr/share/man/man1/alignment-max.1.gz
  • usr/share/man/man1/alignment-max.1.gz
  • usr/share/man/man1/alignment-thin.1.gz
  • usr/share/man/man1/alignment-thin.1.gz
  • usr/share/man/man1/alignment-translate.1.gz
  • usr/share/man/man1/alignment-translate.1.gz
  • usr/share/man/man1/alignments-diff.1.gz
  • usr/share/man/man1/alignments-diff.1.gz
  • usr/share/man/man1/bali-phy.1.gz
  • usr/share/man/man1/bali-phy.1.gz
  • usr/share/man/man1/bp-analyze.1.gz
  • usr/share/man/man1/bp-analyze.1.gz
  • usr/share/man/man1/cut-range.1.gz
  • usr/share/man/man1/cut-range.1.gz
  • usr/share/man/man1/draw-tree.1.gz
  • usr/share/man/man1/draw-tree.1.gz
  • usr/share/man/man1/mctree-mean-lengths.1.gz
  • usr/share/man/man1/mctree-mean-lengths.1.gz
  • usr/share/man/man1/model_P.1.gz
  • usr/share/man/man1/model_P.1.gz
  • usr/share/man/man1/pickout.1.gz
  • usr/share/man/man1/pickout.1.gz
  • usr/share/man/man1/statreport.1.gz
  • usr/share/man/man1/statreport.1.gz
  • usr/share/man/man1/stats-select.1.gz
  • usr/share/man/man1/stats-select.1.gz
  • usr/share/man/man1/subsample.1.gz
  • usr/share/man/man1/subsample.1.gz
  • usr/share/man/man1/tree-mean-lengths.1.gz
  • usr/share/man/man1/tree-mean-lengths.1.gz
  • usr/share/man/man1/tree-tool.1.gz
  • usr/share/man/man1/tree-tool.1.gz
  • usr/share/man/man1/trees-bootstrap.1.gz
  • usr/share/man/man1/trees-bootstrap.1.gz
  • usr/share/man/man1/trees-consensus.1.gz
  • usr/share/man/man1/trees-consensus.1.gz
  • usr/share/man/man1/trees-distances.1.gz
  • usr/share/man/man1/trees-distances.1.gz
  • usr/share/man/man1/trees-to-SRQ.1.gz
  • usr/share/man/man1/trees-to-SRQ.1.gz
• I possible-documentation-but-no-doc-base-registration
• I spelling-error-in-binary
  • usr/bin/bali-phy buil build
  • usr/bin/bali-phy ment meant

bali-phy-dbgsym (3.3+dfsg-1+b1; main)

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/02/cd1ab3a57809d6462d3dc1469112cad95bff4f.debug
  • usr/lib/debug/.build-id/06/8a7368a63a952de916cd06be2dc1e0b0e38638.debug
  • usr/lib/debug/.build-id/12/9b8685c47b565636b00cddd85fdcf565476d49.debug
  • usr/lib/debug/.build-id/20/f907e7d013cad52737e7dd89e4667361e5b98b.debug
  • usr/lib/debug/.build-id/26/5c9ec1c79065405c2da5805e36a0d2c15fd771.debug
  • usr/lib/debug/.build-id/2a/4823af1edffacf26dddd2b773fdefc9f4e8e02.debug
  • usr/lib/debug/.build-id/2e/3e6433b3c51b3bd2625582e8a948c160fc304c.debug
  • usr/lib/debug/.build-id/33/55b52bad2e30ce5bbbe5081343234ba7c4cced.debug
  • usr/lib/debug/.build-id/35/3e05d4e65a79b6f79e14ea5196a950398bdcb1.debug
  • usr/lib/debug/.build-id/35/786a3733d74cdc49bc3847569db71403cd4f88.debug
  • usr/lib/debug/.build-id/36/dcdb43bd5fa800eec87ce7b17f66c4b4c86fc7.debug
  • usr/lib/debug/.build-id/38/e4d41f10f32f9c72bd33dbe4bd1a97d22978b1.debug
  • usr/lib/debug/.build-id/65/8498654d25da14ad240b0ffe91aa2576d57e43.debug
  • usr/lib/debug/.build-id/68/2adbf273a5f0606dcbe53b099d83c0d2e1b5e1.debug
  • usr/lib/debug/.build-id/6a/2868344579a548df192f596509faa84e6ed39c.debug
  • usr/lib/debug/.build-id/6f/73a95e0db8049d55a09af20f8257113f41240f.debug
  • usr/lib/debug/.build-id/7a/3d644241463b4e75dcba771f2e489df1168e2d.debug
  • usr/lib/debug/.build-id/82/f5ba7ca2b588eb8a955470ad7928ea2c7c1cb1.debug
  • usr/lib/debug/.build-id/84/080b799ffd19a98c888856d385b8d6bc324bb3.debug
  • usr/lib/debug/.build-id/85/e58cf02b30f6014be8496e1ee695a471dc8e7c.debug
  • usr/lib/debug/.build-id/8b/eef04168ca1a8dcb7bb0bcf0eec92a791746ad.debug
  • usr/lib/debug/.build-id/93/6dd087fdd3e67f912db5d87107db67c85eb4f5.debug
  • usr/lib/debug/.build-id/94/98b3b692480b14d06181e2e05a18e9a83b1c60.debug
  • usr/lib/debug/.build-id/97/13ee5228d03f2f2a721b1fac7eee2aa1bb7fbf.debug
  • usr/lib/debug/.build-id/97/f099c53864b0514efdab9cff8d9cdcad98b6f6.debug
  • usr/lib/debug/.build-id/98/ba2355e12fa4ecf2a885a1696096e991953f9b.debug
  • usr/lib/debug/.build-id/99/efbce6b3226860624d4e25f977880d221e9d58.debug
  • usr/lib/debug/.build-id/9e/906e648ca1a27fd236a4fb801eaf3a0762c60f.debug
  • usr/lib/debug/.build-id/9f/1e96caf2e2772cf9f8e8fab93451471a205ce5.debug
  • usr/lib/debug/.build-id/a4/6c5c9226e440c4c5a82cca2e4193035743c0f9.debug
  • usr/lib/debug/.build-id/a9/b7c9d39ee7b7d96fa1d1cd6b700dfdc48f023a.debug
  • usr/lib/debug/.build-id/ad/3002c0821163635c9bab1182977bd6cf86c673.debug
  • usr/lib/debug/.build-id/b4/1dada28977a1ca020d23cd0ab9b4133d356eec.debug
  • usr/lib/debug/.build-id/d5/9dc2f6789ffc2aa8dc328daea3b0938f77bced.debug
  • usr/lib/debug/.build-id/d6/2376d07017e34cc9d44ca48eae45767aa8ec06.debug
  • usr/lib/debug/.build-id/e4/204245997d8cbb6b740b21693a58c48a049c15.debug
  • usr/lib/debug/.build-id/ee/5d20538725bb4d2b15c48977e3c43585ba6383.debug
  • usr/lib/debug/.build-id/f8/17743e4b91dd655b4716360f6aa7129ca367af.debug
  • usr/lib/debug/.build-id/fa/e2ad77e6e09753a446867831e61a10e327d343.debug
  • usr/lib/debug/.build-id/fc/7d6c0bf02d2b46ef71299d3a4bbef1c5c50644.debug
  • usr/lib/debug/.build-id/fd/91c302722064b37c34108c87fa4a67d9462ce0.debug
  • usr/lib/debug/.build-id/fe/d01d2a0cae55fed4f008faa27772495d5ecb68.debug

• W changelog-should-mention-nmu
• W debian-rules-should-not-set-CFLAGS-from-noopt
• P debian-watch-does-not-check-gpg-signature
• P duplicate-in-relation-field
  • in source build-depends: dh-python, dh-python
• P file-contains-trailing-whitespace
  • debian/changelog (line 131)
  • debian/changelog (line 247)
  • debian/changelog (line 269)
  • debian/control (line 100)
  • debian/control (line 101)
  • debian/control (line 104)
  • debian/control (line 105)
  • debian/control (line 117)
  • debian/control (line 118)
  • debian/control (line 119)
  • debian/control (line 120)
  • debian/control (line 121)
  • debian/control (line 124)
  • debian/control (line 125)
  • debian/control (line 139)
  • debian/control (line 140)
  • debian/control (line 141)
  • debian/control (line 142)
  • debian/control (line 154)
  • debian/control (line 155)
  • debian/control (line 156)
  • debian/control (line 157)
  • debian/control (line 171)
  • debian/control (line 172)
  • debian/control (line 173)
  • debian/control (line 174)
  • debian/control (line 186)
  • debian/control (line 187)
  • debian/control (line 188)
  • debian/control (line 211)
  • debian/control (line 212)
  • debian/control (line 213)
  • debian/control (line 53)
  • debian/control (line 54)
  • debian/control (line 55)
  • debian/control (line 56)
  • debian/control (line 57)
  • debian/control (line 60)
  • debian/control (line 61)
  • debian/control (line 74)
  • debian/control (line 75)
  • debian/control (line 76)
  • debian/control (line 77)
  • debian/control (line 78)
  • debian/control (line 81)
  • debian/control (line 82)
  • debian/control (line 97)
  • debian/control (line 98)
  • debian/control (line 99)
  • debian/rules (line 1)
  • debian/rules (line 145)
  • debian/rules (line 158)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 9
• W python-foo-but-no-python3-foo
  • python-ball
  • python-ballview
• W source-nmu-has-incorrect-version-number
  • 1.4.3~beta1-3
• W spelling-error-in-patch-description
  • debian/patches/fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch comparision comparison
  • debian/patches/link_against_x11.patch explicitely explicitly
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ball.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ball.git

ballview (1.4.3~beta1-3+b1; main)

• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/ballview.desktop
• W desktop-mime-but-no-exec-code
  • usr/share/applications/ballview.desktop
• I hardening-no-fortify-functions
  • usr/bin/BALLView
• I spelling-error-in-binary
  • usr/bin/BALLView dont don't
  • usr/bin/BALLView informations information
  • usr/bin/BALLView occured occurred

libball1.4 (1.4.3~beta1-3+b1; main)

• X binary-file-built-without-LFS-support
  • usr/lib/libBALL.so.1.4
• W dev-pkg-without-shlib-symlink
  • usr/lib/libBALL.so.1.4 usr/lib/libBALL.so
• I hardening-no-fortify-functions
  • usr/lib/libBALL.so.1.4
• I no-symbols-control-file
  • usr/lib/libBALL.so.1.4
• X shlib-calls-exit
  • usr/lib/libBALL.so.1.4
• I spelling-error-in-binary
  • usr/lib/libBALL.so.1.4 CONECT CONNECT
  • usr/lib/libBALL.so.1.4 childs children
  • usr/lib/libBALL.so.1.4 enought enough
  • usr/lib/libBALL.so.1.4 errorneous erroneous
  • usr/lib/libBALL.so.1.4 featues features
  • usr/lib/libBALL.so.1.4 implmented implemented
  • usr/lib/libBALL.so.1.4 intialization initialization
  • usr/lib/libBALL.so.1.4 occured occurred
  • usr/lib/libBALL.so.1.4 paramters parameters
  • usr/lib/libBALL.so.1.4 registerd registered
  • usr/lib/libBALL.so.1.4 seperator separator
  • usr/lib/libBALL.so.1.4 standart standard
  • usr/lib/libBALL.so.1.4 unkown unknown
  • usr/lib/libBALL.so.1.4 woNT won't

libball1.4-doc

• X duplicate-files
  • usr/share/doc/libball1.4/html/BALL/d0/d00/VIEW_2KERNEL_2kernel_8doc.html usr/share/doc/libball1.4/html/BALL/db/d6a/KERNEL_2kernel_8doc.html
  • usr/share/doc/libball1.4/html/BALL/d0/d85/COMMON_2common_8doc.html usr/share/doc/libball1.4/html/BALL/d0/ded/MOLMEC_2COMMON_2common_8doc.html
  • usr/share/doc/libball1.4/html/BALL/d2/dad/DATATYPE_2datatype_8doc.html usr/share/doc/libball1.4/html/BALL/d4/d2e/VIEW_2DATATYPE_2datatype_8doc.html
  • usr/share/doc/libball1.4/html/BALL/search/all_0.js usr/share/doc/libball1.4/html/BALL/search/groups_0.js
  • usr/share/doc/libball1.4/html/BALL/search/all_1.js usr/share/doc/libball1.4/html/BALL/search/defines_0.js
  • usr/share/doc/libball1.4/html/BALL/search/all_1c.js usr/share/doc/libball1.4/html/BALL/search/functions_1a.js

libballview1.4 (1.4.3~beta1-3+b1; main)

• W dev-pkg-without-shlib-symlink
  • usr/lib/libVIEW.so.1.4 usr/lib/libVIEW.so
• I hardening-no-fortify-functions
  • usr/lib/libVIEW.so.1.4
• I no-symbols-control-file
  • usr/lib/libVIEW.so.1.4
• O package-name-doesnt-match-sonames
  • libVIEW1.4
• I spelling-error-in-binary
  • usr/lib/libVIEW.so.1.4 Dont Don't
  • usr/lib/libVIEW.so.1.4 Informations Information
  • usr/lib/libVIEW.so.1.4 Uknown Unknown
  • usr/lib/libVIEW.so.1.4 an other another
  • usr/lib/libVIEW.so.1.4 beeing being
  • usr/lib/libVIEW.so.1.4 calulate calculate
  • usr/lib/libVIEW.so.1.4 choosen chosen
  • usr/lib/libVIEW.so.1.4 correspoding corresponding
  • usr/lib/libVIEW.so.1.4 doesnt doesn't
  • usr/lib/libVIEW.so.1.4 executeable executable
  • usr/lib/libVIEW.so.1.4 mininum minimum
  • usr/lib/libVIEW.so.1.4 occured occurred
  • usr/lib/libVIEW.so.1.4 orgin origin
  • usr/lib/libVIEW.so.1.4 reseting resetting
  • usr/lib/libVIEW.so.1.4 succesfully successfully
  • usr/lib/libVIEW.so.1.4 sucessfully successfully
  • usr/lib/libVIEW.so.1.4 unkown unknown

libballview1.4-dev (1.4.3~beta1-3+b1; main)

• I package-contains-documentation-outside-usr-share-doc
  • usr/include/BALL/VIEW/UIC/README
• O package-contains-empty-directory
  • usr/lib/

python-ball (1.4.3~beta1-3+b1; main)

• X binary-file-built-without-LFS-support
  • usr/lib/python2.7/dist-packages/BALLCore.i386-linux-gnu.so

• W debian-rules-should-not-set-CFLAGS-from-noopt
• P debian-watch-does-not-check-gpg-signature
• P duplicate-in-relation-field
  • in source build-depends: dh-python, dh-python
• P file-contains-trailing-whitespace
  • debian/changelog (line 146)
  • debian/changelog (line 262)
  • debian/changelog (line 284)
  • debian/control (line 100)
  • debian/control (line 101)
  • debian/control (line 104)
  • debian/control (line 105)
  • debian/control (line 117)
  • debian/control (line 118)
  • debian/control (line 119)
  • debian/control (line 120)
  • debian/control (line 121)
  • debian/control (line 124)
  • debian/control (line 125)
  • debian/control (line 139)
  • debian/control (line 140)
  • debian/control (line 141)
  • debian/control (line 142)
  • debian/control (line 154)
  • debian/control (line 155)
  • debian/control (line 156)
  • debian/control (line 157)
  • debian/control (line 171)
  • debian/control (line 172)
  • debian/control (line 173)
  • debian/control (line 174)
  • debian/control (line 186)
  • debian/control (line 187)
  • debian/control (line 188)
  • debian/control (line 211)
  • debian/control (line 212)
  • debian/control (line 213)
  • debian/control (line 53)
  • debian/control (line 54)
  • debian/control (line 55)
  • debian/control (line 56)
  • debian/control (line 57)
  • debian/control (line 60)
  • debian/control (line 61)
  • debian/control (line 74)
  • debian/control (line 75)
  • debian/control (line 76)
  • debian/control (line 77)
  • debian/control (line 78)
  • debian/control (line 81)
  • debian/control (line 82)
  • debian/control (line 97)
  • debian/control (line 98)
  • debian/control (line 99)
  • debian/rules (line 1)
  • debian/rules (line 145)
  • debian/rules (line 158)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 10
• W python-foo-but-no-python3-foo
  • python-ball
  • python-ballview
• W spelling-error-in-patch-description
  • debian/patches/fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch comparision comparison
  • debian/patches/link_against_x11.patch explicitely explicitly
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ball.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ball.git

ballview

• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/ballview.desktop
• W desktop-mime-but-no-exec-code
  • usr/share/applications/ballview.desktop
• I hardening-no-fortify-functions
  • usr/bin/BALLView
• I spelling-error-in-binary
  • usr/bin/BALLView dont don't
  • usr/bin/BALLView informations information
  • usr/bin/BALLView occured occurred
• W spelling-error-in-changelog
  • upsteam upstream

libball1.4

• W dev-pkg-without-shlib-symlink
  • usr/lib/libBALL.so.1.4 usr/lib/libBALL.so
• I hardening-no-fortify-functions
  • usr/lib/libBALL.so.1.4
• I no-symbols-control-file
  • usr/lib/libBALL.so.1.4
• X shlib-calls-exit
  • usr/lib/libBALL.so.1.4
• I spelling-error-in-binary
  • usr/lib/libBALL.so.1.4 CONECT CONNECT
  • usr/lib/libBALL.so.1.4 childs children
  • usr/lib/libBALL.so.1.4 enought enough
  • usr/lib/libBALL.so.1.4 errorneous erroneous
  • usr/lib/libBALL.so.1.4 featues features
  • usr/lib/libBALL.so.1.4 implmented implemented
  • usr/lib/libBALL.so.1.4 intialization initialization
  • usr/lib/libBALL.so.1.4 occured occurred
  • usr/lib/libBALL.so.1.4 paramters parameters
  • usr/lib/libBALL.so.1.4 registerd registered
  • usr/lib/libBALL.so.1.4 seperator separator
  • usr/lib/libBALL.so.1.4 standart standard
  • usr/lib/libBALL.so.1.4 unkown unknown
  • usr/lib/libBALL.so.1.4 woNT won't
• W spelling-error-in-changelog
  • upsteam upstream

libball1.4-data

• W spelling-error-in-changelog
  • upsteam upstream

libball1.4-dev

• W spelling-error-in-changelog
  • upsteam upstream

libball1.4-doc

• X duplicate-files
  • usr/share/doc/libball1.4/html/BALL/d0/d00/VIEW_2KERNEL_2kernel_8doc.html usr/share/doc/libball1.4/html/BALL/db/d6a/KERNEL_2kernel_8doc.html
  • usr/share/doc/libball1.4/html/BALL/d0/d85/COMMON_2common_8doc.html usr/share/doc/libball1.4/html/BALL/d0/ded/MOLMEC_2COMMON_2common_8doc.html
  • usr/share/doc/libball1.4/html/BALL/d2/dad/DATATYPE_2datatype_8doc.html usr/share/doc/libball1.4/html/BALL/d4/d2e/VIEW_2DATATYPE_2datatype_8doc.html
  • usr/share/doc/libball1.4/html/BALL/search/all_0.js usr/share/doc/libball1.4/html/BALL/search/groups_0.js
  • usr/share/doc/libball1.4/html/BALL/search/all_1.js usr/share/doc/libball1.4/html/BALL/search/defines_0.js
  • usr/share/doc/libball1.4/html/BALL/search/all_1c.js usr/share/doc/libball1.4/html/BALL/search/functions_1a.js
• W spelling-error-in-changelog
  • upsteam upstream

libballview1.4

• W dev-pkg-without-shlib-symlink
  • usr/lib/libVIEW.so.1.4 usr/lib/libVIEW.so
• I hardening-no-fortify-functions
  • usr/lib/libVIEW.so.1.4
• I no-symbols-control-file
  • usr/lib/libVIEW.so.1.4
• O package-name-doesnt-match-sonames
  • libVIEW1.4
• I spelling-error-in-binary
  • usr/lib/libVIEW.so.1.4 Dont Don't
  • usr/lib/libVIEW.so.1.4 Informations Information
  • usr/lib/libVIEW.so.1.4 Uknown Unknown
  • usr/lib/libVIEW.so.1.4 an other another
  • usr/lib/libVIEW.so.1.4 beeing being
  • usr/lib/libVIEW.so.1.4 calulate calculate
  • usr/lib/libVIEW.so.1.4 choosen chosen
  • usr/lib/libVIEW.so.1.4 correspoding corresponding
  • usr/lib/libVIEW.so.1.4 doesnt doesn't
  • usr/lib/libVIEW.so.1.4 executeable executable
  • usr/lib/libVIEW.so.1.4 mininum minimum
  • usr/lib/libVIEW.so.1.4 occured occurred
  • usr/lib/libVIEW.so.1.4 orgin origin
  • usr/lib/libVIEW.so.1.4 reseting resetting
  • usr/lib/libVIEW.so.1.4 succesfully successfully
  • usr/lib/libVIEW.so.1.4 sucessfully successfully
  • usr/lib/libVIEW.so.1.4 unkown unknown
• W spelling-error-in-changelog
  • upsteam upstream

libballview1.4-dev

• I package-contains-documentation-outside-usr-share-doc
  • usr/include/BALL/VIEW/UIC/README
• O package-contains-empty-directory
  • usr/lib/
• W spelling-error-in-changelog
  • upsteam upstream

python-ball

• W spelling-error-in-changelog
  • upsteam upstream

python-ballview

• W spelling-error-in-changelog
  • upsteam upstream

• P debian-watch-does-not-check-gpg-signature
• X deprecated-configure-filename
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libbambamc0

• X binary-file-built-without-LFS-support
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
• I hardening-no-bindnow
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
  • usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
  • usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50

• I debian-rules-contains-unnecessary-get-orig-source-target
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 39)
  • debian/changelog (line 41)

libbamtools-doc

• X duplicate-files
  • usr/share/doc/libbamtools-dev/html/search/all_10.js usr/share/doc/libbamtools-dev/html/search/variables_d.js
  • usr/share/doc/libbamtools-dev/html/search/all_15.js usr/share/doc/libbamtools-dev/html/search/variables_12.js
  • usr/share/doc/libbamtools-dev/html/search/all_17.js usr/share/doc/libbamtools-dev/html/search/variables_13.js
  • usr/share/doc/libbamtools-dev/html/search/all_18.js usr/share/doc/libbamtools-dev/html/search/functions_12.js
  • usr/share/doc/libbamtools-dev/html/search/all_4.js usr/share/doc/libbamtools-dev/html/search/functions_3.js
  • usr/share/doc/libbamtools-dev/html/search/all_7.js usr/share/doc/libbamtools-dev/html/search/functions_6.js
  • usr/share/doc/libbamtools-dev/html/search/all_9.js usr/share/doc/libbamtools-dev/html/search/functions_8.js
  • usr/share/doc/libbamtools-dev/html/search/all_a.js usr/share/doc/libbamtools-dev/html/search/variables_7.js

libbamtools2.5.1

• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libbamtools.so.2.5.1
  • usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1
• X shlib-calls-exit
  • usr/lib/i386-linux-gnu/libbamtools.so.2.5.1
  • usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 22)
• I testsuite-autopkgtest-missing

bandage

• X binary-file-built-without-LFS-support
  • usr/bin/Bandage
• I hardening-no-bindnow
  • usr/bin/Bandage
  • usr/bin/Bandage
• I spelling-error-in-binary
  • usr/bin/Bandage multipled multiplied
  • usr/bin/Bandage multipled multiplied
  • usr/bin/Bandage occurence occurrence
  • usr/bin/Bandage occurence occurrence
  • usr/bin/Bandage occurences occurrences
  • usr/bin/Bandage occurences occurrences

• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 5)
• O debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 3.9.8 (released 2016-04-06) (current is 4.2.1)
• P package-does-not-install-examples
  • examples/

barrnap

• E wrong-path-for-interpreter
  • usr/bin/barrnap (#!/usr/bin/env perl != /usr/bin/perl)

• P debian-watch-does-not-check-gpg-signature
• I override_dh_auto_test-does-not-check-DEB_BUILD_OPTIONS
  • (line 15)
• X upstream-metadata-file-is-missing

bart

• X binary-file-built-without-LFS-support
  • usr/bin/bart

• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 10
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing
• I vcs-field-not-canonical
  • https://salsa.debian.org/med-team/bart-view.git https://salsa.debian.org/med-team/bart-view

bart-view

• X binary-file-built-without-LFS-support
  • usr/lib/bart/commands/view
• I hardening-no-bindnow
  • usr/lib/bart/commands/view
  • usr/lib/bart/commands/view

• P debian-watch-does-not-check-gpg-signature
• I unused-override
  • testsuite-dependency-has-unparsable-elements

bcftools

• W binary-without-manpage
  • usr/bin/guess-ploidy.py
  • usr/bin/plot-roh.py
  • usr/bin/run-roh.pl
• X dependency-on-python-version-marked-for-end-of-life
  • (Suggests: python)
• I hardening-no-bindnow
  • usr/bin/bcftools
  • usr/lib/x86_64-linux-gnu/bcftools/GTisec.so
  • usr/lib/x86_64-linux-gnu/bcftools/GTsubset.so
  • usr/lib/x86_64-linux-gnu/bcftools/ad-bias.so
  • usr/lib/x86_64-linux-gnu/bcftools/af-dist.so
  • usr/lib/x86_64-linux-gnu/bcftools/check-ploidy.so
  • usr/lib/x86_64-linux-gnu/bcftools/check-sparsity.so
  • usr/lib/x86_64-linux-gnu/bcftools/color-chrs.so
  • usr/lib/x86_64-linux-gnu/bcftools/contrast.so
  • usr/lib/x86_64-linux-gnu/bcftools/counts.so
  • usr/lib/x86_64-linux-gnu/bcftools/dosage.so
  • usr/lib/x86_64-linux-gnu/bcftools/fill-AN-AC.so
  • usr/lib/x86_64-linux-gnu/bcftools/fill-from-fasta.so
  • usr/lib/x86_64-linux-gnu/bcftools/fill-tags.so
  • usr/lib/x86_64-linux-gnu/bcftools/fixploidy.so
  • usr/lib/x86_64-linux-gnu/bcftools/fixref.so
  • usr/lib/x86_64-linux-gnu/bcftools/frameshifts.so
  • usr/lib/x86_64-linux-gnu/bcftools/guess-ploidy.so
  • usr/lib/x86_64-linux-gnu/bcftools/impute-info.so
  • usr/lib/x86_64-linux-gnu/bcftools/isecGT.so
  • usr/lib/x86_64-linux-gnu/bcftools/mendelian.so
  • usr/lib/x86_64-linux-gnu/bcftools/missing2ref.so
  • usr/lib/x86_64-linux-gnu/bcftools/prune.so
  • usr/lib/x86_64-linux-gnu/bcftools/setGT.so
  • usr/lib/x86_64-linux-gnu/bcftools/smpl-stats.so
  • usr/lib/x86_64-linux-gnu/bcftools/split.so
  • usr/lib/x86_64-linux-gnu/bcftools/tag2tag.so
  • usr/lib/x86_64-linux-gnu/bcftools/trio-stats.so
  • usr/lib/x86_64-linux-gnu/bcftools/trio-switch-rate.so
• W script-with-language-extension
  • usr/bin/color-chrs.pl
  • usr/bin/guess-ploidy.py
  • usr/bin/plot-roh.py
  • usr/bin/run-roh.pl
  • usr/bin/vcfutils.pl
• I spelling-error-in-binary
  • usr/bin/bcftools expresion expression
  • usr/lib/x86_64-linux-gnu/bcftools/fill-from-fasta.so expresion expression
  • usr/lib/x86_64-linux-gnu/bcftools/setGT.so expresion expression
• I spelling-error-in-manpage
  • usr/share/man/man1/bcftools.1.gz allows to allows one to
  • usr/share/man/man1/bcftools.1.gz contruction construction
  • usr/share/man/man1/bcftools.1.gz wich which

• P debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • src/cimg/
• I testsuite-autopkgtest-missing

beads

• X binary-file-built-without-LFS-support
  • usr/bin/beads
  • usr/bin/qtbeads
• W binary-without-manpage
  • usr/bin/qtbeads
  • usr/bin/qtbeads
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/beads.desktop
  • usr/share/applications/beads.desktop
• I spelling-error-in-binary
  • usr/bin/beads assignement assignment
  • usr/bin/beads assignement assignment
  • usr/bin/qtbeads assignement assignment
  • usr/bin/qtbeads assignement assignment
  • usr/bin/qtbeads developped developed
  • usr/bin/qtbeads developped developed
  • usr/bin/qtbeads occured occurred
  • usr/bin/qtbeads occured occurred
• I spelling-error-in-copyright
  • therefor therefore
  • therefor therefore

• P debian-watch-does-not-check-gpg-signature
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 5.0-180928+dfsg

beagle-doc

• X duplicate-files
  • usr/share/doc/beagle/api/jquery/external/jquery/jquery.js usr/share/doc/beagle/api/jquery/jquery-1.10.2.js
• O embedded-javascript-library
  • usr/share/doc/beagle/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/beagle/api/jquery/jquery-1.10.2.js please use libjs-jquery
  • usr/share/doc/beagle/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/beagle/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/beagle/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/beagle/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 103)
  • debian/control (line 104)
  • debian/control (line 106)
  • debian/control (line 107)
  • debian/control (line 108)
  • debian/control (line 109)
  • debian/control (line 110)
  • debian/control (line 45)
  • debian/control (line 46)
  • debian/control (line 48)
  • debian/control (line 49)
  • debian/control (line 50)
  • debian/control (line 51)
  • debian/control (line 52)
  • debian/control (line 64)
  • debian/control (line 65)
  • debian/control (line 67)
  • debian/control (line 68)
  • debian/control (line 69)
  • debian/control (line 70)
  • debian/control (line 71)
  • debian/control (line 84)
  • debian/control (line 85)
  • debian/control (line 87)
  • debian/control (line 88)
  • debian/control (line 89)
  • debian/control (line 90)
  • debian/control (line 91)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • lib/
  • release/Linux/lib/
  • release_phylogeography/common/lib/
• I testsuite-autopkgtest-missing

beast-mcmc

• W binary-without-manpage
  • usr/bin/beast-tracer
  • usr/bin/loganalyser
  • usr/bin/logcombiner
  • usr/bin/treeannotator
  • usr/bin/treestat

beast-mcmc-doc

• I possible-documentation-but-no-doc-base-registration

beast-mcmc-examples

• X duplicate-files
  • usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/freqs_zs.csv usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/freqs.csv
  • usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/inirates.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/rates_zs.csv.gz

libnucleotidelikelihoodcore0

• I hardening-no-bindnow
  • usr/lib/libNucleotideLikelihoodCore.so.0
  • usr/lib/libNucleotideLikelihoodCore.so.0
• I no-symbols-control-file
  • usr/lib/libNucleotideLikelihoodCore.so.0
  • usr/lib/libNucleotideLikelihoodCore.so.0

libnucleotidelikelihoodcore0-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/80/b24c2b87bfd56a5b0dc5540627bbf59ceb1beb.debug
  • usr/lib/debug/.build-id/a5/6d36e425b496b7bf79ab85f9d6c96cb21e0c90.debug

• P debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • lib/bundler/
• I testsuite-autopkgtest-missing

beast2-mcmc-doc

• I possible-documentation-but-no-doc-base-registration

beast2-mcmc-examples

• X duplicate-files
  • usr/share/doc/beast-mcmc/examples/nexus/26.nex.gz usr/share/doc/beast-mcmc/examples/nexus/gopher.nex.gz

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 27)
  • debian/changelog (line 32)
  • debian/changelog (line 49)
  • debian/changelog (line 56)
  • debian/rules (line 47)
  • debian/rules (line 48)
  • debian/rules (line 49)
• I testsuite-autopkgtest-missing

bedops

• X binary-file-built-without-LFS-support
  • usr/bin/bedextract
  • usr/bin/bedmap
  • usr/bin/bedops
  • usr/bin/closest-features
  • usr/bin/sort-bed
• W binary-without-manpage
  • usr/bin/bam2bed_gnuParallel
  • usr/bin/bam2bed_gnuParallel
  • usr/bin/bam2bed_sge
  • usr/bin/bam2bed_sge
  • usr/bin/bam2bed_slurm
  • usr/bin/bam2bed_slurm
  • usr/bin/bam2starch_gnuParallel
  • usr/bin/bam2starch_gnuParallel
  • usr/bin/bam2starch_sge
  • usr/bin/bam2starch_sge
  • usr/bin/bam2starch_slurm
  • usr/bin/bam2starch_slurm
  • usr/bin/starchcluster_gnuParallel
  • usr/bin/starchcluster_gnuParallel
  • usr/bin/starchcluster_sge
  • usr/bin/starchcluster_sge
  • usr/bin/starchcluster_slurm
  • usr/bin/starchcluster_slurm
• W csh-considered-harmful
  • usr/bin/bam2bed_gnuParallel
  • usr/bin/bam2bed_gnuParallel
  • usr/bin/bam2bed_sge
  • usr/bin/bam2bed_sge
  • usr/bin/bam2bed_slurm
  • usr/bin/bam2bed_slurm
  • usr/bin/bam2starch_gnuParallel
  • usr/bin/bam2starch_gnuParallel
  • usr/bin/bam2starch_sge
  • usr/bin/bam2starch_sge
  • usr/bin/bam2starch_slurm
  • usr/bin/bam2starch_slurm
  • usr/bin/starchcluster_gnuParallel
  • usr/bin/starchcluster_gnuParallel
  • usr/bin/starchcluster_sge
  • usr/bin/starchcluster_sge
  • usr/bin/starchcluster_slurm
  • usr/bin/starchcluster_slurm
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
  • (Depends: python)
• I hardening-no-bindnow
  • usr/bin/convert2bed
  • usr/bin/convert2bed
• I hardening-no-fortify-functions
  • usr/bin/bedextract
  • usr/bin/bedextract
  • usr/bin/bedmap
  • usr/bin/bedmap
  • usr/bin/bedops
  • usr/bin/bedops
  • usr/bin/bedops-starch
  • usr/bin/bedops-starch
  • usr/bin/closest-features
  • usr/bin/closest-features
  • usr/bin/convert2bed
  • usr/bin/convert2bed
  • usr/bin/sort-bed
  • usr/bin/sort-bed
  • usr/bin/starchcat
  • usr/bin/starchcat
  • usr/bin/starchstrip
  • usr/bin/starchstrip
  • usr/bin/unstarch
  • usr/bin/unstarch
• W manpage-has-errors-from-man
  • usr/share/man/man1/bedops-starch.1.gz 30: warning [p 1, 5.3i]: can't break line
  • usr/share/man/man1/bedops-starch.1.gz 30: warning [p 1, 5.3i]: can't break line
  • usr/share/man/man1/starchcat.1.gz 38: warning [p 1, 7.3i]: can't break line
  • usr/share/man/man1/starchcat.1.gz 38: warning [p 1, 7.3i]: can't break line
  • usr/share/man/man1/starchstrip.1.gz 52: warning [p 1, 10.5i]: can't break line
  • usr/share/man/man1/starchstrip.1.gz 52: warning [p 1, 10.5i]: can't break line
  • usr/share/man/man1/unstarch.1.gz 27: warning [p 1, 4.3i]: cannot adjust line
  • usr/share/man/man1/unstarch.1.gz 27: warning [p 1, 4.3i]: cannot adjust line
• W manpage-has-useless-whatis-entry
  • usr/share/man/man1/bam2bed.1.gz
  • usr/share/man/man1/bam2bed.1.gz
  • usr/share/man/man1/bam2starch.1.gz
  • usr/share/man/man1/bam2starch.1.gz
  • usr/share/man/man1/bedextract.1.gz
  • usr/share/man/man1/bedextract.1.gz
  • usr/share/man/man1/bedmap.1.gz
  • usr/share/man/man1/bedmap.1.gz
  • usr/share/man/man1/bedops-starch.1.gz
  • usr/share/man/man1/bedops-starch.1.gz
  • usr/share/man/man1/bedops.1.gz
  • usr/share/man/man1/bedops.1.gz
  • usr/share/man/man1/closest-features.1.gz
  • usr/share/man/man1/closest-features.1.gz
  • usr/share/man/man1/convert2bed.1.gz
  • usr/share/man/man1/convert2bed.1.gz
  • usr/share/man/man1/gff2bed.1.gz
  • usr/share/man/man1/gff2bed.1.gz
  • usr/share/man/man1/gff2starch.1.gz
  • usr/share/man/man1/gff2starch.1.gz
  • usr/share/man/man1/gtf2bed.1.gz
  • usr/share/man/man1/gtf2bed.1.gz
  • usr/share/man/man1/gtf2starch.1.gz
  • usr/share/man/man1/gtf2starch.1.gz
  • usr/share/man/man1/gvf2bed.1.gz
  • usr/share/man/man1/gvf2bed.1.gz
  • usr/share/man/man1/gvf2starch.1.gz
  • usr/share/man/man1/gvf2starch.1.gz
  • usr/share/man/man1/psl2bed.1.gz
  • usr/share/man/man1/psl2bed.1.gz
  • usr/share/man/man1/psl2starch.1.gz
  • usr/share/man/man1/psl2starch.1.gz
  • usr/share/man/man1/rmsk2bed.1.gz
  • usr/share/man/man1/rmsk2bed.1.gz
  • usr/share/man/man1/rmsk2starch.1.gz
  • usr/share/man/man1/rmsk2starch.1.gz
  • usr/share/man/man1/sam2bed.1.gz
  • usr/share/man/man1/sam2bed.1.gz
  • usr/share/man/man1/sam2starch.1.gz
  • usr/share/man/man1/sam2starch.1.gz
  • usr/share/man/man1/sort-bed.1.gz
  • usr/share/man/man1/sort-bed.1.gz
  • usr/share/man/man1/starch-diff.1.gz
  • usr/share/man/man1/starch-diff.1.gz
  • usr/share/man/man1/starchcat.1.gz
  • usr/share/man/man1/starchcat.1.gz
  • usr/share/man/man1/starchstrip.1.gz
  • usr/share/man/man1/starchstrip.1.gz
  • usr/share/man/man1/unstarch.1.gz
  • usr/share/man/man1/unstarch.1.gz
  • usr/share/man/man1/update-sort-bed-migrate-candidates.1.gz
  • usr/share/man/man1/update-sort-bed-migrate-candidates.1.gz
  • usr/share/man/man1/update-sort-bed-slurm.1.gz
  • usr/share/man/man1/update-sort-bed-slurm.1.gz
  • usr/share/man/man1/update-sort-bed-starch-slurm.1.gz
  • usr/share/man/man1/update-sort-bed-starch-slurm.1.gz
  • usr/share/man/man1/vcf2bed.1.gz
  • usr/share/man/man1/vcf2bed.1.gz
  • usr/share/man/man1/vcf2starch.1.gz
  • usr/share/man/man1/vcf2starch.1.gz
  • usr/share/man/man1/wig2bed.1.gz
  • usr/share/man/man1/wig2bed.1.gz
  • usr/share/man/man1/wig2starch.1.gz
  • usr/share/man/man1/wig2starch.1.gz

bedops-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/37/04cd41caac58f0a9e98e4fe25e131c9da357f0.debug
  • usr/lib/debug/.build-id/df/68589f8dcf01355d227a9dc6affe683ba7ab92.debug

bedops-doc

• X duplicate-files
  • usr/share/doc/bedops/html/_images/reference_bedextract_mechanism.png usr/share/doc/bedops/html/_images/reference_bedextract_mechanism1.png

• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 7)
  • (line 8)
• P debian-watch-does-not-check-gpg-signature
• W dep5-copyright-license-name-not-unique
  • (paragraph at line 100)
  • mit (paragraph at line 28)
• W dep5-file-paragraph-references-header-paragraph
  • gpl-2 (paragraph at line 22)
• P file-contains-trailing-whitespace
  • debian/changelog (line 23)
  • debian/rules (line 43)
• I out-of-date-standards-version
  • 3.9.8 (released 2016-04-06) (current is 4.2.1)
• P package-uses-old-debhelper-compat-version
  • 10
• I unused-license-paragraph-in-dep5-copyright
  • gpl-3+ (paragraph at line 100)
  • mit (paragraph at line 100)
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bedtools.git
  • vcs-git https://anonscm.debian.org/git/debian-med/bedtools.git

bedtools

• W binary-without-manpage
  • usr/bin/annotateBed
  • usr/bin/bamToBed
  • usr/bin/bamToFastq
  • usr/bin/bed12ToBed6
  • usr/bin/bedToBam
  • usr/bin/bedToIgv
  • usr/bin/bedpeToBam
  • usr/bin/bedtools
  • usr/bin/closestBed
  • usr/bin/clusterBed
  • usr/bin/complementBed
  • usr/bin/coverageBed
  • usr/bin/expandCols
  • usr/bin/fastaFromBed
  • usr/bin/flankBed
  • usr/bin/genomeCoverageBed
  • usr/bin/getOverlap
  • usr/bin/groupBy
  • usr/bin/intersectBed
  • usr/bin/linksBed
  • usr/bin/mapBed
  • usr/bin/maskFastaFromBed
  • usr/bin/mergeBed
  • usr/bin/multiBamCov
  • usr/bin/multiIntersectBed
  • usr/bin/nucBed
  • usr/bin/pairToBed
  • usr/bin/pairToPair
  • usr/bin/randomBed
  • usr/bin/shiftBed
  • usr/bin/shuffleBed
  • usr/bin/slopBed
  • usr/bin/sortBed
  • usr/bin/subtractBed
  • usr/bin/tagBam
  • usr/bin/unionBedGraphs
  • usr/bin/windowBed
  • usr/bin/windowMaker
• I spelling-error-in-binary
  • usr/bin/bedtools postive positive

bedtools-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/16/d99793d5cd655de9bbcb393f482abb96d0a419.debug

bedtools-test

• W executable-not-elf-or-script
  • usr/share/bedtools/data/knownGene.hg18.chr21.bed
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/bedtools/test/fisher/README.md
• W script-not-executable
  • usr/share/bedtools/test/bamtobed/test-bamtobed.sh
  • usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
  • usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
  • usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/closest/test-closest.sh
  • usr/share/bedtools/test/cluster/test-cluster.sh
  • usr/share/bedtools/test/complement/test-complement.sh
  • usr/share/bedtools/test/coverage/test-coverage.sh
  • usr/share/bedtools/test/expand/test-expand.sh
  • usr/share/bedtools/test/fisher/cmp.sh
  • usr/share/bedtools/test/fisher/get.sh
  • usr/share/bedtools/test/fisher/shuf.sh
  • usr/share/bedtools/test/fisher/test-fisher.sh
  • usr/share/bedtools/test/flank/test-flank.sh
  • usr/share/bedtools/test/general/test-general.sh
  • usr/share/bedtools/test/getfasta/test-getfasta.sh
  • usr/share/bedtools/test/groupBy/test-groupby.sh
  • usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
  • usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/intersect/test-intersect.sh
  • usr/share/bedtools/test/jaccard/test-jaccard.sh
  • usr/share/bedtools/test/makewindows/test-makewindows.sh
  • usr/share/bedtools/test/map/test-map.sh
  • usr/share/bedtools/test/merge/test-merge.sh
  • usr/share/bedtools/test/multicov/test-multicov.sh
  • usr/share/bedtools/test/reldist/test-reldist.sh
  • usr/share/bedtools/test/sample/test-sample.sh
  • usr/share/bedtools/test/shift/test-shift.sh
  • usr/share/bedtools/test/shuffle/test-shuffle.sh
  • usr/share/bedtools/test/slop/test-slop.sh
  • usr/share/bedtools/test/sort/test-sort.sh
  • usr/share/bedtools/test/spacing/test-spacing.sh
  • usr/share/bedtools/test/split/test-split.sh
  • usr/share/bedtools/test/subtract/test-subtract.sh
  • usr/share/bedtools/test/test.sh

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 49)

bedtools

• W binary-without-manpage
  • usr/bin/annotateBed
  • usr/bin/bamToBed
  • usr/bin/bamToFastq
  • usr/bin/bed12ToBed6
  • usr/bin/bedToBam
  • usr/bin/bedToIgv
  • usr/bin/bedpeToBam
  • usr/bin/bedtools
  • usr/bin/closestBed
  • usr/bin/clusterBed
  • usr/bin/complementBed
  • usr/bin/coverageBed
  • usr/bin/expandCols
  • usr/bin/fastaFromBed
  • usr/bin/flankBed
  • usr/bin/genomeCoverageBed
  • usr/bin/getOverlap
  • usr/bin/groupBy
  • usr/bin/intersectBed
  • usr/bin/linksBed
  • usr/bin/mapBed
  • usr/bin/maskFastaFromBed
  • usr/bin/mergeBed
  • usr/bin/multiBamCov
  • usr/bin/multiIntersectBed
  • usr/bin/nucBed
  • usr/bin/pairToBed
  • usr/bin/pairToPair
  • usr/bin/randomBed
  • usr/bin/shiftBed
  • usr/bin/shuffleBed
  • usr/bin/slopBed
  • usr/bin/sortBed
  • usr/bin/subtractBed
  • usr/bin/tagBam
  • usr/bin/unionBedGraphs
  • usr/bin/windowBed
  • usr/bin/windowMaker
• I spelling-error-in-binary
  • usr/bin/bedtools postive positive

bedtools-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/80/ff25dec4eb06f32356c685e18a4efc19d49099.debug

bedtools-test

• W executable-not-elf-or-script
  • usr/share/bedtools/data/knownGene.hg18.chr21.bed
  • usr/share/bedtools/test/sort/b.bed
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/bedtools/test/fisher/README.md
• W script-not-executable
  • usr/share/bedtools/test/bamtobed/test-bamtobed.sh
  • usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
  • usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
  • usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/closest/test-closest.sh
  • usr/share/bedtools/test/cluster/test-cluster.sh
  • usr/share/bedtools/test/complement/test-complement.sh
  • usr/share/bedtools/test/expand/test-expand.sh
  • usr/share/bedtools/test/fisher/cmp.sh
  • usr/share/bedtools/test/fisher/get.sh
  • usr/share/bedtools/test/fisher/shuf.sh
  • usr/share/bedtools/test/fisher/test-fisher.sh
  • usr/share/bedtools/test/flank/test-flank.sh
  • usr/share/bedtools/test/general/test-general.sh
  • usr/share/bedtools/test/getfasta/test-getfasta.sh
  • usr/share/bedtools/test/groupby/test-groupby.sh
  • usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
  • usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/intersect/test-intersect.sh
  • usr/share/bedtools/test/jaccard/test-jaccard.sh
  • usr/share/bedtools/test/makewindows/test-makewindows.sh
  • usr/share/bedtools/test/map/test-map.sh
  • usr/share/bedtools/test/merge/test-merge.sh
  • usr/share/bedtools/test/multicov/test-multicov.sh
  • usr/share/bedtools/test/negativecontrol/test-negativecontrol.sh
  • usr/share/bedtools/test/reldist/test-reldist.sh
  • usr/share/bedtools/test/sample/test-sample.sh
  • usr/share/bedtools/test/shift/test-shift.sh
  • usr/share/bedtools/test/shuffle/test-shuffle.sh
  • usr/share/bedtools/test/slop/test-slop.sh
  • usr/share/bedtools/test/sort/test-sort.sh
  • usr/share/bedtools/test/spacing/test-spacing.sh
  • usr/share/bedtools/test/split/test-split.sh
  • usr/share/bedtools/test/subtract/test-subtract.sh

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 36)
  • debian/changelog (line 39)
  • debian/changelog (line 41)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.1.3 (released 2017-12-27) (current is 4.2.1)
• I testsuite-autopkgtest-missing

berkeley-express (1.5.2+dfsg-1+b2; main)

• X binary-file-built-without-LFS-support
  • usr/lib/debian-med/bin/express

• P debian-watch-does-not-check-gpg-signature

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 13)
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.2.1)
• I tar-errors-from-source
  • Ignoring unknown extended header keyword 'LIBARCHIVE.creationtime'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
• I testsuite-autopkgtest-missing

bio-rainbow

• P debian-changelog-line-too-short
  • DEP3 (line 17)
  • DEP3 (line 17)
  • DEP5 (line 18)
  • DEP5 (line 18)
• W manpage-has-errors-from-man
  • usr/share/man/man1/bio-rainbow.1.gz 35: warning [p 1, 6.2i]: cannot adjust line
  • usr/share/man/man1/bio-rainbow.1.gz 35: warning [p 1, 6.2i]: cannot adjust line
• O script-with-language-extension
  • usr/bin/select_all_rbcontig.pl
  • usr/bin/select_all_rbcontig.pl
  • usr/bin/select_best_rbcontig.pl
  • usr/bin/select_best_rbcontig.pl
  • usr/bin/select_best_rbcontig_plus_read1.pl
  • usr/bin/select_best_rbcontig_plus_read1.pl
  • usr/bin/select_sec_rbcontig.pl
  • usr/bin/select_sec_rbcontig.pl
• I spelling-error-in-binary
  • usr/bin/bio-rainbow similiarity similarity
  • usr/bin/bio-rainbow similiarity similarity
  • usr/bin/rbasm similiarity similarity
  • usr/bin/rbasm similiarity similarity
• I spelling-error-in-manpage
  • usr/share/man/man1/rbasm.1.gz similiarity similarity
  • usr/share/man/man1/rbasm.1.gz similiarity similarity

• P debian-watch-does-not-check-gpg-signature

bio-tradis

• X application-in-library-section
  • perl usr/bin/add_tradis_tags usr/bin/bacteria_tradis usr/bin/check_tradis_tags usr/bin/combine_tradis_plots usr/bin/filter_tradis_tags usr/bin/remove_tradis_tags usr/bin/tradis_comparison usr/bin/tradis_comparison.R usr/bin/tradis_essentiality usr/bin/tradis_essentiality.R usr/bin/tradis_gene_insert_sites usr/bin/tradis_merge_plots usr/bin/tradis_plot
• W binary-without-manpage
  • usr/bin/tradis_comparison.R
  • usr/bin/tradis_essentiality.R

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.bioinformatics.org/biococoa/downloads/
• P file-contains-trailing-whitespace
  • debian/changelog (line 87)
• P package-does-not-use-debhelper-or-cdbs
• P source-contains-empty-directory
  • BCAppKit/2.0-cleanup/
  • BCFoundation/2.0-cleanup/
  • BCFoundation/Tests/TestFiles/
• I testsuite-autopkgtest-missing

libbiococoa-dev

• P debian-changelog-line-too-short
  • DEP5 (line 4)
  • DEP5 (line 4)
• I possible-documentation-but-no-doc-base-registration

libbiococoa2

• X binary-file-built-without-LFS-support
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
• P debian-changelog-line-too-short
  • DEP5 (line 4)
  • DEP5 (line 4)
• I hardening-no-bindnow
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
• X shlib-calls-exit
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2

libbiococoa2-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/9e/240c2acd1d1758b59d3cd7b5ea6c810fd07772.debug
  • usr/lib/debug/.build-id/c8/bf26a7cdd663f043b62c90c2865a970612fe64.debug

• P debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • reports/
• I testsuite-autopkgtest-missing

libbiojava-java

• I javalib-but-no-public-jars
• I possible-documentation-but-no-doc-base-registration

libbiojava-java-demos

• X duplicate-files
  • usr/share/doc/libbiojava-java-demos/examples/dp/fake.fasta.gz usr/share/doc/libbiojava-java-demos/examples/files/fake.fasta.gz
  • usr/share/doc/libbiojava-java-demos/examples/dp/fakepromoter.xml.gz usr/share/doc/libbiojava-java-demos/examples/files/fakepromoter.xml.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/AL121903.embl.gz usr/share/doc/libbiojava-java-demos/examples/gff/AL121903.embl.gz usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.embl.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/AL121903.genbank.gz usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.genbank.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/varC4-2.gff.gz usr/share/doc/libbiojava-java-demos/examples/gff/varC4-2.gff.gz

libbiojava-java-doc

• X duplicate-files
  • usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js usr/share/doc/libbiojava-java/api/jquery/jquery-3.3.1.js
• W embedded-javascript-library
  • usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 10)
  • debian/changelog (line 17)
  • debian/changelog (line 3)
  • debian/changelog (line 33)
  • debian/changelog (line 59)
  • debian/changelog (line 65)
  • debian/rules (line 97)
• W global-files-wildcard-not-first-paragraph-in-dep5-copyright
  • (paragraph at line 36)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I missing-explanation-for-repacked-upstream-tarball
• I override_dh_auto_test-does-not-check-DEB_BUILD_OPTIONS
  • (line 58)
• P package-uses-old-debhelper-compat-version
  • 10
• W patch-file-present-but-not-mentioned-in-series
  • fix_code_to_support_latest_jmol
  • fix_uselog4j1
  • java8_compatibility.patch
• W spelling-error-in-patch-description
  • debian/patches/fix_itext_class_updates an other another
• I testsuite-autopkgtest-missing
• I unused-file-paragraph-in-dep5-copyright
  • paragraph at line 14
  • paragraph at line 5
• X upstream-metadata-file-is-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/biojava4-live.git
  • vcs-git https://anonscm.debian.org/git/debian-med/biojava4-live.git
• I wildcard-matches-nothing-in-dep5-copyright
  • biojava-forester (paragraph at line 14)
  • biojava-jcolorbrewer (paragraph at line 5)

libbiojava4-java

• O empty-binary-package
• I javalib-but-no-public-jars

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 5
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 7)
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.2.1)

python3-biomaj3

• X application-in-library-section
  • python usr/bin/biomaj_migrate_database.py
• W binary-without-manpage
  • usr/bin/biomaj_migrate_database.py
• X library-package-name-for-application
  • usr/bin/biomaj_migrate_database.py
• W script-with-language-extension
  • usr/bin/biomaj_migrate_database.py
• I unknown-field-in-control
  • python-egg-name

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 7)
• I out-of-date-standards-version
  • 4.1.3 (released 2017-12-27) (current is 4.2.1)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

python3-biomaj3-cli

• X application-in-library-section
  • python usr/bin/biomaj-cli usr/bin/biomaj-cli.py
• W binary-without-manpage
  • usr/bin/biomaj-cli
  • usr/bin/biomaj-cli.py
• X library-package-name-for-application
  • usr/bin/biomaj-cli usr/bin/biomaj-cli.py
• W script-with-language-extension
  • usr/bin/biomaj-cli.py
• I unknown-field-in-control
  • python-egg-name

• P debian-watch-does-not-check-gpg-signature
• X upstream-metadata-file-is-missing

python3-biomaj3-core

• I unknown-field-in-control
  • python-egg-name

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• P debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.1.3 (released 2017-12-27) (current is 4.2.1)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

python3-biomaj3-daemon

• X application-in-library-section
  • python usr/bin/biomaj-daemon-consumer usr/bin/biomaj-daemon-web usr/bin/biomaj_daemon_consumer.py
• W binary-without-manpage
  • usr/bin/biomaj-daemon-consumer
  • usr/bin/biomaj-daemon-web
  • usr/bin/biomaj_daemon_consumer.py
• X library-package-name-for-application
  • usr/bin/biomaj-daemon-consumer usr/bin/biomaj-daemon-web usr/bin/biomaj_daemon_consumer.py
• W script-with-language-extension
  • usr/bin/biomaj_daemon_consumer.py
• I unknown-field-in-control
  • python-egg-name

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 8)
• I out-of-date-standards-version
  • 4.1.3 (released 2017-12-27) (current is 4.2.1)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

python3-biomaj3-download

• X application-in-library-section
  • python usr/bin/biomaj-download-consumer usr/bin/biomaj-download-web usr/bin/biomaj_download_consumer.py
• W binary-without-manpage
  • usr/bin/biomaj-download-consumer
  • usr/bin/biomaj-download-web
  • usr/bin/biomaj_download_consumer.py
• X library-package-name-for-application
  • usr/bin/biomaj-download-consumer usr/bin/biomaj-download-web usr/bin/biomaj_download_consumer.py
• W script-with-language-extension
  • usr/bin/biomaj_download_consumer.py
• I unknown-field-in-control
  • python-egg-name

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 8)
• I out-of-date-standards-version
  • 4.1.3 (released 2017-12-27) (current is 4.2.1)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

python3-biomaj3-process

• X application-in-library-section
  • python usr/bin/biomaj-process-consumer usr/bin/biomaj-process-web usr/bin/biomaj_process_consumer.py
• W binary-without-manpage
  • usr/bin/biomaj-process-consumer
  • usr/bin/biomaj-process-web
  • usr/bin/biomaj_process_consumer.py
• X library-package-name-for-application
  • usr/bin/biomaj-process-consumer usr/bin/biomaj-process-web usr/bin/biomaj_process_consumer.py
• W script-with-language-extension
  • usr/bin/biomaj_process_consumer.py
• I unknown-field-in-control
  • python-egg-name

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.0.0 (released 2017-05-28) (current is 4.2.1)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/biomaj3-user.git
  • vcs-git https://anonscm.debian.org/git/debian-med/biomaj3-user.git

python3-biomaj3-user

• X application-in-library-section
  • python usr/bin/biomaj-users usr/bin/biomaj-users-web usr/bin/biomaj-users.py
• W binary-without-manpage
  • usr/bin/biomaj-users
  • usr/bin/biomaj-users-web
  • usr/bin/biomaj-users.py
• X library-package-name-for-application
  • usr/bin/biomaj-users usr/bin/biomaj-users-web usr/bin/biomaj-users.py
• W script-with-language-extension
  • usr/bin/biomaj-users.py
• I unknown-field-in-control
  • python-egg-name

• P co-maintained-package-with-no-vcs-fields
• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.0.0 (released 2017-05-28) (current is 4.2.1)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

python3-biomaj3-zipkin

• I extended-description-is-probably-too-short
• I unknown-field-in-control
  • python-egg-name

• P debian-watch-does-not-check-gpg-signature

bioperl

• W binary-without-manpage
  • usr/bin/bp_das_server
  • usr/bin/bp_seqfeature_delete
  • usr/bin/bp_seqfeature_gff3

libbio-perl-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Root::Build.3pm.gz
  • usr/share/man/man3/Bio::Root::Exception.3pm.gz
  • usr/share/man/man3/Bio::Root::IO.3pm.gz
  • usr/share/man/man3/Bio::Root::Root.3pm.gz
  • usr/share/man/man3/Bio::Root::RootI.3pm.gz
  • usr/share/man/man3/Bio::Root::Storable.3pm.gz
  • usr/share/man/man3/Bio::Root::Test.3pm.gz
  • usr/share/man/man3/Bio::Root::Utilities.3pm.gz
  • usr/share/man/man3/Bio::Root::Version.3pm.gz
  • usr/share/man/man3/Bio::SearchIO::hmmer3.3pm.gz
  • usr/share/man/man3/Bio::Tools::SeqPattern::Backtranslate.3pm.gz
  • usr/share/man/man3/Bio::TreeIO::NewickParser.3pm.gz
  • usr/share/man/man3/Bio::TreeIO::newick.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/Bio::SeqIO::bsml.3pm.gz 357: warning [p 4, 0.2i]: can't break line
• X perl-module-name-not-mentioned-in-description
  • Bio::Perl
• I spelling-error-in-manpage
  • usr/share/man/man3/Bio::LiveSeq::AARange.3pm.gz everytime every time
  • usr/share/man/man3/Bio::PhyloNetwork::muVector.3pm.gz substract subtract
  • usr/share/man/man3/Bio::PopGen::HtSNP.3pm.gz happend happened
  • usr/share/man/man3/Bio::Seq::LargeSeqI.3pm.gz resetable resettable
  • usr/share/man/man3/Bio::Structure::Entry.3pm.gz Conect Connect
  • usr/share/man/man3/Bio::Structure::Entry.3pm.gz conect connect
  • usr/share/man/man3/Bio::Structure::Entry.3pm.gz conect connect
  • usr/share/man/man3/Bio::Structure::Entry.3pm.gz conect connect
  • usr/share/man/man3/Bio::Structure::Entry.3pm.gz conect connect
  • usr/share/man/man3/Bio::Tools::Analysis::Protein::ELM.3pm.gz concensus consensus

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 108)
  • debian/changelog (line 156)
• X libmodule-build-perl-needs-to-be-in-build-depends
• X upstream-metadata-file-is-missing

bioperl-run

• O script-with-language-extension
  • usr/bin/bp_bioperl_application_installer.pl
  • usr/bin/bp_multi_hmmsearch.pl
  • usr/bin/bp_panalysis.pl
  • usr/bin/bp_papplmaker.pl
  • usr/bin/bp_run_neighbor.pl
  • usr/bin/bp_run_protdist.pl

libbio-perl-run-perl

• I extended-description-is-probably-too-short
• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::FastTree.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Raxml.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Primate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Prints.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Profile.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Signalp.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::TribeMCL.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Vista.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::DB::SoapEUtilities::Result.3pm.gz:415
  • usr/share/man/man3/Bio::Tools::Run::ERPIN.3pm.gz:317
• I spelling-error-in-manpage
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz arugment argument
  • usr/share/man/man3/Bio::Tools::Run::Analysis::soap.3pm.gz allows to allows one to
  • usr/share/man/man3/Bio::Tools::Run::BWA.3pm.gz contruction construction
  • usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm.gz argment argument
  • usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm.gz retrive retrieve
  • usr/share/man/man3/Bio::Tools::Run::Hmmer.3pm.gz specifiy specify
  • usr/share/man/man3/Bio::Tools::Run::Maq.3pm.gz contruction construction
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phast::PhyloFit.3pm.gz flexability flexibility
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Neighbor.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm.gz documetation documentation
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz bootstap bootstrap
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz orginal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3pm.gz desribe describe
  • usr/share/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3pm.gz desribe describe
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phyml.3pm.gz explicitely explicitly
  • usr/share/man/man3/Bio::Tools::Run::StandAloneBlastPlus.3pm.gz exeception exception
  • usr/share/man/man3/Bio::Tools::Run::WrapperBase::CommandExts.3pm.gz contruction construction

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://eddylab.org/software/squid/
• P file-contains-trailing-whitespace
  • debian/changelog (line 127)
  • debian/changelog (line 36)
  • debian/changelog (line 38)
  • debian/changelog (line 39)
  • debian/changelog (line 41)
  • debian/changelog (line 42)
  • debian/changelog (line 44)
  • debian/changelog (line 45)
  • debian/changelog (line 46)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • Scripts/
  • Shiva/

biosquid

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
  • usr/share/common-licenses/GPL
• I hardening-no-fortify-functions
  • usr/bin/revcomp
  • usr/bin/revcomp

libsquid-dev

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
  • usr/share/common-licenses/GPL

libsquid1

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
  • usr/share/common-licenses/GPL
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libsquid.so.1.0.0
  • usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0
• X shlib-calls-exit
  • usr/lib/i386-linux-gnu/libsquid.so.1.0.0
  • usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0

• P debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

biosyntax-example

• I duplicated-compressed-file
  • usr/share/doc/biosyntax/examples/nt-seq/test2.fq.gz

• I debian-rules-contains-unnecessary-get-orig-source-target
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 83)
• P package-uses-old-debhelper-compat-version
  • 10
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bitseq.git
  • vcs-git https://anonscm.debian.org/git/debian-med/bitseq.git

bitseq

• W binary-without-manpage
  • usr/bin/biocUpdate
  • usr/bin/biocUpdate
  • usr/bin/checkTR
  • usr/bin/checkTR
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/LGPL
  • usr/share/common-licenses/LGPL
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
  • (Depends: python)

• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • libcpp/
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/blasr.git
  • vcs-git https://anonscm.debian.org/git/debian-med/blasr.git

blasr

• W binary-without-manpage
  • usr/bin/bam2bax
  • usr/bin/bam2plx
  • usr/bin/bax2bam
• I hardening-no-bindnow
  • usr/bin/bam2bax
  • usr/bin/bam2plx
  • usr/bin/bax2bam
  • usr/bin/blasr
  • usr/bin/loadPulses
  • usr/bin/pls2fasta
  • usr/bin/samFilter
  • usr/bin/samtoh5
  • usr/bin/samtom4
  • usr/bin/sawriter
  • usr/bin/sdpMatcher
  • usr/bin/toAfg
• I hardening-no-fortify-functions
  • usr/bin/bam2bax
  • usr/bin/bam2plx
  • usr/bin/blasr
• I spelling-error-in-binary
  • usr/bin/bam2bax ouptut output
  • usr/bin/bam2plx ouptut output
  • usr/bin/loadPulses defualt default
  • usr/bin/loadPulses opiton option
• I spelling-error-in-manpage
  • usr/share/man/man1/loadPulses.1.gz Defualt Default

• I debian-rules-contains-unnecessary-get-orig-source-target
• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/blimps-([0-9.]+)\.tar\.gz
• I out-of-date-standards-version
  • 4.1.1 (released 2017-09-27) (current is 4.2.1)
• P package-uses-old-debhelper-compat-version
  • 10
• P source-contains-prebuilt-binary
  • bin/Linux/LAMA
  • bin/Linux/LAMA_search
  • bin/Linux/addseqs
  • bin/Linux/biassed_blocks_finder
  • bin/Linux/blalign
  • bin/Linux/blastdat
  • bin/Linux/bldist
  • bin/Linux/blimps
  • bin/Linux/blk2mot
  • bin/Linux/blk2pssm
  • bin/Linux/blk2slx
  • bin/Linux/blkprob
  • bin/Linux/blksort
  • bin/Linux/block_vis
  • bin/Linux/blocks_search
  • bin/Linux/blosum
  • bin/Linux/blweight
  • bin/Linux/cobbler
  • bin/Linux/codehop
  • bin/Linux/coduse
  • bin/Linux/fastaseqs
  • bin/Linux/find_biassed_blocks
  • bin/Linux/format_block
  • bin/Linux/getblock
  • bin/Linux/getseq
  • bin/Linux/htmlize-LAMA
  • bin/Linux/htmlize-codehop
  • bin/Linux/interpro
  • bin/Linux/lisblk
  • bin/Linux/mablock
  • bin/Linux/makeblockmap
  • bin/Linux/makelis
  • bin/Linux/makelogob
  • bin/Linux/matrix_logob
  • bin/Linux/motifj
  • bin/Linux/motomat
  • bin/Linux/multimat
  • bin/Linux/narrow
  • bin/Linux/oligo_melt
  • bin/Linux/papssm
  • bin/Linux/prints2blocks
  • bin/Linux/pssmBL
  • bin/Linux/pssmdist
  • bin/Linux/rank_matrix
  • bin/Linux/retblock
  • bin/Linux/show_aligned_blocks
  • bin/Linux/uextract
  • bin/Sun_intel/LAMA
  • bin/Sun_intel/LAMA_search
  • bin/Sun_intel/addseqs
  • bin/Sun_intel/biassed_blocks_finder
  • bin/Sun_intel/blalign
  • bin/Sun_intel/blastdat
  • bin/Sun_intel/bldist
  • bin/Sun_intel/blimps
  • bin/Sun_intel/blk2mot
  • bin/Sun_intel/blk2pssm
  • bin/Sun_intel/blk2slx
  • bin/Sun_intel/blkprob
  • bin/Sun_intel/blksort
  • bin/Sun_intel/block_vis
  • bin/Sun_intel/blocks_search
  • bin/Sun_intel/blosum
  • bin/Sun_intel/blweight
  • bin/Sun_intel/cobbler
  • bin/Sun_intel/codehop
  • bin/Sun_intel/coduse
  • bin/Sun_intel/fastaseqs
  • bin/Sun_intel/find_biassed_blocks
  • bin/Sun_intel/format_block
  • bin/Sun_intel/getblock
  • bin/Sun_intel/getseq
  • bin/Sun_intel/htmlize-LAMA
  • bin/Sun_intel/htmlize-codehop
  • bin/Sun_intel/interpro
  • bin/Sun_intel/lisblk
  • bin/Sun_intel/mablock
  • bin/Sun_intel/makeblockmap
  • bin/Sun_intel/makelis
  • bin/Sun_intel/makelogob
  • bin/Sun_intel/matrix_logob
  • bin/Sun_intel/motifj
  • bin/Sun_intel/motomat
  • bin/Sun_intel/multimat
  • bin/Sun_intel/narrow
  • bin/Sun_intel/oligo_melt
  • bin/Sun_intel/papssm
  • bin/Sun_intel/prints2blocks
  • bin/Sun_intel/pssmBL
  • bin/Sun_intel/pssmdist
  • bin/Sun_intel/rank_matrix
  • bin/Sun_intel/retblock
  • bin/Sun_intel/show_aligned_blocks
  • bin/Sun_intel/uextract
  • bin/Sun_sparc/LAMA
  • bin/Sun_sparc/LAMA_search
  • bin/Sun_sparc/addseqs
  • bin/Sun_sparc/biassed_blocks_finder
  • bin/Sun_sparc/blalign
  • bin/Sun_sparc/blastdat
  • bin/Sun_sparc/bldist
  • bin/Sun_sparc/blimps
  • bin/Sun_sparc/blk2lis
  • bin/Sun_sparc/blk2mot
  • bin/Sun_sparc/blk2pssm
  • bin/Sun_sparc/blk2slx
  • bin/Sun_sparc/blkprob
  • bin/Sun_sparc/blksort
  • bin/Sun_sparc/block_vis
  • bin/Sun_sparc/blocks_search
  • bin/Sun_sparc/blosum
  • bin/Sun_sparc/blweight
  • bin/Sun_sparc/cobbler
  • bin/Sun_sparc/codehop
  • bin/Sun_sparc/coduse
  • bin/Sun_sparc/fastaseqs
  • bin/Sun_sparc/find_biassed_blocks
  • bin/Sun_sparc/format_block
  • bin/Sun_sparc/getblock
  • bin/Sun_sparc/getseq
  • bin/Sun_sparc/htmlize-LAMA
  • bin/Sun_sparc/htmlize-codehop
  • bin/Sun_sparc/interpro
  • bin/Sun_sparc/lisblk
  • bin/Sun_sparc/lislis
  • bin/Sun_sparc/mablock
  • bin/Sun_sparc/makeblockmap
  • bin/Sun_sparc/makelis
  • bin/Sun_sparc/makelogob
  • bin/Sun_sparc/matrix_logob
  • bin/Sun_sparc/motifj
  • bin/Sun_sparc/motmisc.o
  • bin/Sun_sparc/motomat
  • bin/Sun_sparc/multimat
  • bin/Sun_sparc/narrow
  • bin/Sun_sparc/oligo_melt
  • bin/Sun_sparc/papssm
  • bin/Sun_sparc/prints2blocks
  • bin/Sun_sparc/protxblk
  • bin/Sun_sparc/pssmBL
  • bin/Sun_sparc/pssmdist
  • bin/Sun_sparc/rank_matrix
  • bin/Sun_sparc/retblock
  • bin/Sun_sparc/show_aligned_blocks
  • bin/Sun_sparc/uextract
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/blimps.git
  • vcs-git https://anonscm.debian.org/git/debian-med/blimps.git

blimps-examples

• X duplicate-files
  • usr/share/doc/blimps-examples/examples/processor/distribution/fasta.in.seqs usr/share/doc/blimps-examples/examples/processor/distribution/stockholm.in.seqs
• X package-contains-no-arch-dependent-files

blimps-utils

• X duplicate-files
  • usr/share/doc/blimps-utils/html/biased_blocks.html usr/share/doc/blimps-utils/html/biassed_blocks.html
• I hardening-no-bindnow
  • usr/bin/fastaseqs
• W privacy-breach-generic
  • usr/share/doc/blimps-utils/html/thanks.html [<img src="http://www.nigms.nih.gov/nigms.nih.gov/images/banner_nigms.gif" height="45" width="300">] (http://www.nigms.nih.gov/nigms.nih.gov/images/banner_nigms.gif)
• W zero-byte-file-in-doc-directory
  • usr/share/doc/blimps-utils/html/bin/marks
  • usr/share/doc/blimps-utils/html/bin/wave

blimps-utils-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/b3/1fe833082cf677db5fb84acfdb8765e4ad9dcf.debug

libblimps3

• I hardening-no-bindnow
  • usr/lib/libblimps.so.3.0.0
• I no-symbols-control-file
  • usr/lib/libblimps.so.3.0.0
• X shlib-calls-exit
  • usr/lib/libblimps.so.3.0.0
• I spelling-error-in-binary
  • usr/lib/libblimps.so.3.0.0 nam name
  • usr/lib/libblimps.so.3.0.0 occured occurred
  • usr/lib/libblimps.so.3.0.0 outputing outputting
  • usr/lib/libblimps.so.3.0.0 retur return

libblimps3-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/d7/e047413df8095339461122e593b24b553cf656.debug

• P debian-watch-does-not-check-gpg-signature

bolt-lmm (2.3.2+dfsg-3+b1; main)

• I spelling-error-in-binary
  • usr/bin/bolt helpFull helpful

• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 11)
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 130)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I override_dh_auto_test-does-not-check-DEB_BUILD_OPTIONS
  • (line 45)
• P package-uses-old-debhelper-compat-version
  • 9
• W spelling-error-in-patch-description
  • debian/patches/gcc-64bit.patch unfortunatly unfortunately
• I vcs-field-uses-insecure-uri
  • vcs-svn svn://anonscm.debian.org/debian-med/trunk/packages/bowtie/trunk/
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/viewvc/debian-med/trunk/packages/bowtie/trunk/
  • vcs-svn svn://anonscm.debian.org/debian-med/trunk/packages/bowtie/trunk/

bowtie-examples

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/LGPL

• P debian-watch-does-not-check-gpg-signature

bowtie

• O binary-without-manpage
  • usr/bin/bowtie-align-l
  • usr/bin/bowtie-align-l-debug
  • usr/bin/bowtie-align-s
  • usr/bin/bowtie-align-s-debug
  • usr/bin/bowtie-build-l
  • usr/bin/bowtie-build-l-debug
  • usr/bin/bowtie-build-s
  • usr/bin/bowtie-build-s-debug
  • usr/bin/bowtie-inspect-l
  • usr/bin/bowtie-inspect-l-debug
  • usr/bin/bowtie-inspect-s
  • usr/bin/bowtie-inspect-s-debug
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• X duplicate-files
  • usr/share/doc/bowtie/tests/example1.out usr/share/doc/bowtie/tests/example3.out usr/share/doc/bowtie/tests/example8.out
  • usr/share/doc/bowtie/tests/example6.out usr/share/doc/bowtie/tests/example9.out

• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.2.1)
• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 3)
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 131)
  • debian/changelog (line 132)
  • debian/changelog (line 138)
  • debian/changelog (line 145)
  • debian/changelog (line 152)
  • debian/changelog (line 153)
  • debian/changelog (line 170)
  • debian/changelog (line 29)
  • debian/changelog (line 71)
  • debian/changelog (line 72)
  • debian/changelog (line 73)
  • debian/changelog (line 79)
  • debian/changelog (line 90)
  • debian/control (line 24)
  • debian/control (line 25)
  • debian/control (line 26)
  • debian/control (line 27)
  • debian/control (line 30)
  • debian/control (line 39)
  • debian/control (line 40)
  • debian/control (line 41)
  • debian/control (line 42)
  • debian/control (line 45)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 9
• W patch-file-present-but-not-mentioned-in-series
  • fix_makefile_machine_detection.patch
• W unnecessary-testsuite-autopkgtest-field
• I vcs-field-uses-insecure-uri
  • vcs-git git://anonscm.debian.org/debian-med/bowtie2.git
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bowtie2.git
  • vcs-git git://anonscm.debian.org/debian-med/bowtie2.git

bowtie2-examples

• E wrong-path-for-interpreter
  • usr/share/doc/bowtie2/examples/scripts/debug_wrapper.pl (#!/usr/bin/env perl != /usr/bin/perl)

• P debian-watch-does-not-check-gpg-signature

bowtie2

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• P debian-watch-does-not-check-gpg-signature

boxshade

• X binary-file-built-without-LFS-support
  • usr/lib/boxshade/boxshade

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 6)
  • debian/changelog (line 73)
  • debian/rules (line 12)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

bppphyview

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
  • usr/share/common-licenses/GPL
• I extended-description-is-probably-too-short
• I spelling-error-in-copyright
  • therefor therefore
  • therefor therefore

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 153)
  • debian/changelog (line 48)
  • debian/changelog (line 54)
• I testsuite-autopkgtest-missing

bppsuite

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
  • usr/share/common-licenses/GPL
• I hardening-no-fortify-functions
  • usr/bin/bppdist
  • usr/bin/bppdist
  • usr/bin/bppmixedlikelihoods
  • usr/bin/bppmixedlikelihoods
  • usr/bin/bpppopstats
  • usr/bin/bpppopstats
• I spelling-error-in-binary
  • usr/bin/bppalnscore occurence occurrence
  • usr/bin/bppalnscore occurence occurrence
  • usr/bin/bppancestor particularily particularly
  • usr/bin/bppancestor particularily particularly
  • usr/bin/bppmixedlikelihoods particularily particularly
  • usr/bin/bppmixedlikelihoods particularily particularly
  • usr/bin/bppml particularily particularly
  • usr/bin/bppml particularily particularly
  • usr/bin/bpppopstats ouptut output
  • usr/bin/bpppopstats ouptut output
  • usr/bin/bppseqgen begining beginning
  • usr/bin/bppseqgen begining beginning
  • usr/bin/bpptreedraw controler controller
  • usr/bin/bpptreedraw controler controller
• I spelling-error-in-copyright
  • therefor therefore
  • therefor therefore

bppsuite-examples

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• X duplicate-files
  • usr/share/doc/bppsuite-examples/examples/MaximumLikelihood/Nucleotides/Homogeneous/Ancestor.bpp usr/share/doc/bppsuite-examples/examples/MaximumLikelihood/Nucleotides/NonHomogeneousGeneral/Ancestor.bpp
• I spelling-error-in-copyright
  • therefor therefore

• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.2.1)
• P source-contains-empty-directory
  • bin/
  • lib/
• I testsuite-autopkgtest-missing

brig

• W bad-jar-name
  • usr/share/java/BRIG-0.95.jar
  • usr/share/java/BRIG-0.95.jar
• W binary-without-manpage
  • usr/bin/brig
  • usr/bin/brig
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
  • usr/share/common-licenses/GPL

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 188)
  • debian/changelog (line 39)
  • debian/changelog (line 41)
  • debian/changelog (line 43)
  • debian/control (line 52)

bwa

• I spelling-error-in-manpage
  • usr/share/man/man1/bwa.1.gz extentions extensions
  • usr/share/man/man1/bwa.1.gz occurence occurrence
  • usr/share/man/man1/bwa.1.gz openning opening
  • usr/share/man/man1/bwa.1.gz ouptut output
  • usr/share/man/man1/bwa.1.gz overriden overridden

• I debian-rules-parses-dpkg-parsechangelog
  • (line 9)
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 7)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

cain

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/cain.desktop
• I package-contains-documentation-outside-usr-share-doc
  • usr/include/cain/loki/readme.txt

cain-examples

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/cain/examples/cain/dsmts23/Readme.txt
  • usr/share/cain/examples/sbml/dsmts31/README.txt

• P debian-watch-does-not-check-gpg-signature
• P package-does-not-install-examples
  • sdk/libraries/qtpropertybrowser/examples/

libcamitk-dev

• X development-package-ships-elf-binary-in-path
  • usr/bin/camitk-cepgenerator
  • usr/bin/camitk-testactions
  • usr/bin/camitk-testcomponents
  • usr/bin/camitk-wizard
• I hardening-no-fortify-functions
  • usr/bin/camitk-testcomponents
• I spelling-error-in-binary
  • usr/bin/camitk-wizard exemple example
  • usr/bin/camitk-wizard leAT least
  • usr/bin/camitk-wizard wether whether
• X development-package-ships-elf-binary-in-path
  • usr/bin/camitk-cepgenerator
  • usr/bin/camitk-testactions
  • usr/bin/camitk-testcomponents
  • usr/bin/camitk-wizard
• I hardening-no-fortify-functions
  • usr/bin/camitk-testcomponents
• I spelling-error-in-binary
  • usr/bin/camitk-wizard exemple example
  • usr/bin/camitk-wizard leAT least
  • usr/bin/camitk-wizard wether whether

libcamitk4

• I no-symbols-control-file
  • usr/lib/libcamitkcore.so.4.1.2
  • usr/lib/libmonitoring.so.4.1.2
• O package-name-doesnt-match-sonames
  • libcamitkcore4 libmonitoring4
• I spelling-error-in-binary
  • usr/lib/camitk-4.1/actions/libmml.so.4.1.2 Pres Press
  • usr/lib/camitk-4.1/components/libdicom.so.4.1.2 Serie Series
  • usr/lib/libcamitkcore.so.4.1.2 Substract Subtract
  • usr/lib/libmonitoring.so.4.1.2 Pres Press
  • usr/lib/libmonitoring.so.4.1.2 ment meant
• I no-symbols-control-file
  • usr/lib/libcamitkcore.so.4.1.2
  • usr/lib/libmonitoring.so.4.1.2
• O package-name-doesnt-match-sonames
  • libcamitkcore4 libmonitoring4
• I spelling-error-in-binary
  • usr/lib/camitk-4.1/components/libdicom.so.4.1.2 Serie Series
  • usr/lib/libcamitkcore.so.4.1.2 Substract Subtract

libcamitk4-data

• I duplicated-compressed-file
  • usr/share/camitk-4.1/testdata/BigEndianCompressed.img.gz

libqtpropertybrowser4

• I no-symbols-control-file
  • usr/lib/libqtpropertybrowser.so.4.1.2
  • usr/lib/libqtpropertybrowser.so.4.1.2

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 24)
  • debian/changelog (line 27)
  • debian/changelog (line 4)
  • debian/rules (line 18)
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libcamp0.8

• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libcamp.so.0.8.2
  • usr/lib/x86_64-linux-gnu/libcamp.so.0.8.2

• P debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing
• I wildcard-matches-nothing-in-dep5-copyright
  • src/falcon_sense/* (paragraph at line 22)

canu

• I spelling-error-in-binary
  • usr/lib/canu/bin/alignGFA misformed malformed
  • usr/lib/canu/bin/bogart beacuse because
  • usr/lib/canu/bin/bogart upto up to
  • usr/lib/canu/bin/overlapInCorePartition interally internally
  • usr/lib/canu/bin/sequence seperated separated
  • usr/lib/canu/bin/splitReads ouput output
  • usr/lib/canu/bin/sqStoreCreate nam name
  • usr/lib/canu/bin/trimReads ouput output

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 22)
  • debian/changelog (line 24)
  • debian/changelog (line 3)
  • debian/changelog (line 37)
  • debian/changelog (line 43)
  • debian/changelog (line 76)
  • debian/changelog (line 83)
  • debian/changelog (line 89)
  • debian/changelog (line 9)
  • debian/rules (line 13)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.1.0 (released 2017-08-21) (current is 4.2.1)
• P package-uses-old-debhelper-compat-version
  • 10
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/cassiopee.git
  • vcs-git https://anonscm.debian.org/git/debian-med/cassiopee.git

libcassie-doc

• X duplicate-files
  • usr/share/doc/cassiopee/html/search/all_2.js usr/share/doc/cassiopee/html/search/variables_2.js
  • usr/share/doc/cassiopee/html/search/all_3.js usr/share/doc/cassiopee/html/search/functions_1.js
  • usr/share/doc/cassiopee/html/search/all_4.js usr/share/doc/cassiopee/html/search/functions_2.js
  • usr/share/doc/cassiopee/html/search/all_6.js usr/share/doc/cassiopee/html/search/functions_4.js
  • usr/share/doc/cassiopee/html/search/all_8.js usr/share/doc/cassiopee/html/search/variables_5.js
  • usr/share/doc/cassiopee/html/search/all_9.js usr/share/doc/cassiopee/html/search/functions_5.js
  • usr/share/doc/cassiopee/html/search/all_b.js usr/share/doc/cassiopee/html/search/functions_6.js

libcassie1v5 (1.0.9-1+b1; main)

• I no-symbols-control-file
  • usr/lib/libcassie.so.1.0.0
  • usr/lib/libcassie.so.1.0.0
• I wrong-section-according-to-package-name
  • libcassie1v5 => libs
  • libcassie1v5 => libs

• P debian-watch-does-not-check-gpg-signature
• W debian-watch-file-should-mangle-version
  • line 3
• P source-contains-empty-directory
  • bin/lib/
  • db/cogs/
  • db/comparison_genomes/
  • sample_projects/sample_project_1/analysis/
  • sample_projects/sample_project_2/analysis/
  • sample_projects/sample_project_3/analysis/
  • sample_projects/sample_project_4/blast/
  • sample_projects/sample_project_5/analysis/
  • sample_projects/sample_project_5/blast/
  • sample_projects/sample_project_6/analysis/
  • sample_projects/sample_project_6/features/
  • sample_projects/test_blastn/analysis/
  • sample_projects/test_blastn/features/
  • sample_projects/test_blastp/analysis/
  • sample_projects/test_blastp/blast/blast_db/
  • sample_projects/test_blastp/blast/blast_results_local/
  • sample_projects/test_blastp/comparison_genomes/proteins/
  • sample_projects/test_blastp/features/
  • sample_projects/test_blastx/analysis/
  • sample_projects/test_blastx/blast/blast_db/
  • sample_projects/test_blastx/blast/blast_results_local/
  • sample_projects/test_blastx/comparison_genomes/proteins/
  • sample_projects/test_blastx/features/
  • sample_projects/test_orfs/analysis/
  • sample_projects/test_orfs/blast/
  • sample_projects/test_orfs/comparison_genomes/
  • sample_projects/test_orfs/features/
  • sample_projects/test_plots/analysis/
  • sample_projects/test_plots/blast/
  • sample_projects/test_plots/comparison_genomes/
  • sample_projects/test_plots/features/
  • sample_projects/test_tblastn/analysis/
  • sample_projects/test_tblastn/features/
  • sample_projects/test_tblastx/analysis/
  • sample_projects/test_tblastx/features/

cct

• W executable-not-elf-or-script
  • usr/share/cct/lib/assign_cogs/assign_cogs.pl
  • usr/share/cct/lib/cgview_xml_builder/cgview_xml_builder.pl
  • usr/share/cct/lib/convert_vcf_to_features/test.sh
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/cct/lib/assign_cogs/README.txt
  • usr/share/cct/lib/cgview_xml_builder/README.txt
  • usr/share/cct/lib/convert_vcf_to_features/README.txt
  • usr/share/cct/lib/get_cds/README.txt
  • usr/share/cct/lib/get_orfs/README.txt
  • usr/share/cct/lib/local_blast_client/README.txt
  • usr/share/cct/lib/ncbi_search/README.txt
  • usr/share/cct/lib/sequence_to_multi_fasta/README.txt

cct-examples

• X duplicate-files
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_2/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_3/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_4/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_5/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_6/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastn/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastp/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastx/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_orfs/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_plots/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_tblastn/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/cgview_xml_builder.pl.gz
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_a.png usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_b.png
  • usr/share/doc/cct/examples/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk.gz usr/share/doc/cct/examples/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_end_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_end_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_end_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_end_of_orf_rev_comp.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_start_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_start_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_start_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_start_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_start_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_start_of_orf_rev_comp.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_end_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_end_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_end_of_orf.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_end_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_end_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_end_of_orf_rev_comp.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_start_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_start_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_start_of_orf.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_start_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_start_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_start_of_orf_rev_comp.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_blastp/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_blastx/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_plots/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_tblastn/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_tblastx/maps/medium.html
  • usr/share/doc/cct/examples/sample_projects/test_blastn/maps/medium.png usr/share/doc/cct/examples/sample_projects/test_blastx/maps/medium.png usr/share/doc/cct/examples/sample_projects/test_tblastx/maps/medium.png
  • usr/share/doc/cct/examples/sample_projects/test_blastn/reference_genome/split/two_copies_of_long_ORF_opposite_directions.fasta_split.gz usr/share/doc/cct/examples/sample_projects/test_blastx/reference_genome/split/two_copies_of_long_ORF_opposite_directions.fasta_split.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/reference_genome/split/two_copies_of_long_ORF_opposite_directions.fasta_split.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastn/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_blastp/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_blastx/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_tblastn/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastp/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_blastx/comparison_genomes/match_end_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastp/comparison_genomes/match_start_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_blastx/comparison_genomes/match_start_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastp/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs.gz usr/share/doc/cct/examples/sample_projects/test_tblastn/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastx/maps/cgview_xml/medium.xml.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/maps/cgview_xml/medium.xml.gz
• I package-contains-empty-directory
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_2/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_3/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_4/blast/
  • usr/share/doc/cct/examples/sample_projects/sample_project_5/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_5/blast/
  • usr/share/doc/cct/examples/sample_projects/sample_project_6/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_6/features/
  • usr/share/doc/cct/examples/sample_projects/test_blastn/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_blastn/features/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/blast/blast_db/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/blast/blast_results_local/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/comparison_genomes/proteins/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/features/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/blast/blast_db/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/blast/blast_results_local/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/comparison_genomes/proteins/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/features/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/blast/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/comparison_genomes/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/features/
  • usr/share/doc/cct/examples/sample_projects/test_plots/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_plots/blast/
  • usr/share/doc/cct/examples/sample_projects/test_plots/comparison_genomes/
  • usr/share/doc/cct/examples/sample_projects/test_plots/features/
  • usr/share/doc/cct/examples/sample_projects/test_tblastn/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_tblastn/features/
  • usr/share/doc/cct/examples/sample_projects/test_tblastx/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_tblastx/features/

• I debian-rules-parses-dpkg-parsechangelog
  • (line 12)
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• P debian-watch-does-not-check-gpg-signature
• I file-contains-fixme-placeholder
  • debian/rules:71 FIXME
• P file-contains-trailing-whitespace
  • debian/changelog (line 95)
  • debian/control (line 26)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

cd-hit

• X binary-file-built-without-LFS-support
  • usr/lib/cd-hit/cd-hit
  • usr/lib/cd-hit/cd-hit-2d
  • usr/lib/cd-hit/cd-hit-454
  • usr/lib/cd-hit/cd-hit-div
  • usr/lib/cd-hit/cd-hit-est
  • usr/lib/cd-hit/cd-hit-est-2d
• W binary-without-manpage
  • usr/bin/cdhit
  • usr/bin/cdhit
  • usr/bin/cdhit-2d
  • usr/bin/cdhit-2d
  • usr/bin/cdhit-454
  • usr/bin/cdhit-454
  • usr/bin/cdhit-est
  • usr/bin/cdhit-est
  • usr/bin/cdhit-est-2d
  • usr/bin/cdhit-est-2d
  • usr/bin/clstr2tree
  • usr/bin/clstr2tree
  • usr/bin/clstr_merge
  • usr/bin/clstr_merge
  • usr/bin/clstr_merge_noorder
  • usr/bin/clstr_merge_noorder
  • usr/bin/clstr_reduce
  • usr/bin/clstr_reduce
  • usr/bin/clstr_renumber
  • usr/bin/clstr_renumber
  • usr/bin/clstr_rev
  • usr/bin/clstr_rev
  • usr/bin/clstr_sort_by
  • usr/bin/clstr_sort_by
  • usr/bin/clstr_sort_prot_by
  • usr/bin/clstr_sort_prot_by
  • usr/bin/make_multi_seq
  • usr/bin/make_multi_seq
• I spelling-error-in-binary
  • usr/lib/cd-hit/cd-hit-div writen written
  • usr/lib/cd-hit/cd-hit-div writen written
• I spelling-error-in-manpage
  • usr/share/man/man1/cd-hit-2d-para.1.gz requred required
  • usr/share/man/man1/cd-hit-2d-para.1.gz requred required
  • usr/share/man/man1/cd-hit-para.1.gz requred required
  • usr/share/man/man1/cd-hit-para.1.gz requred required

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 42)
  • debian/changelog (line 50)
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 0.99-20100722
• I testsuite-autopkgtest-missing

cdbfasta

• I hardening-no-fortify-functions
  • usr/bin/cdbfasta
  • usr/bin/cdbfasta
  • usr/bin/cdbyank
  • usr/bin/cdbyank

• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 10
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/centrifuge.git
  • vcs-git https://anonscm.debian.org/git/debian-med/centrifuge.git

• P debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/centrifuge.git
  • vcs-git https://anonscm.debian.org/git/debian-med/centrifuge.git

centrifuge

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I hardening-no-fortify-functions
  • usr/lib/centrifuge/centrifuge-build-bin
  • usr/lib/centrifuge/centrifuge-class
  • usr/lib/centrifuge/centrifuge-inspect-bin
• I package-contains-documentation-outside-usr-share-doc
  • usr/lib/centrifuge/share/centrifuge/doc/README
• I possible-documentation-but-no-doc-base-registration
• W script-not-executable
  • usr/lib/centrifuge/share/centrifuge/doc/strip_markdown.pl
• E wrong-path-for-interpreter
  • usr/lib/centrifuge/centrifuge (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-BuildSharedSequence.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-RemoveEmptySequence.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-RemoveN.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-compress.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-kreport (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/centrifuge/centrifuge-sort-nt.pl (#!/usr/bin/env perl != /usr/bin/perl)
  • usr/lib/centrifuge/share/centrifuge/doc/strip_markdown.pl (#!/usr/bin/env perl != /usr/bin/perl)
• W zero-byte-file-in-doc-directory
  • usr/share/doc/centrifuge/html/manual.inc.html

• W build-depends-on-python-sphinx-only
• P debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.2.1)
• W python-foo-but-no-python3-foo
  • python-cfflib
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

• P debian-watch-does-not-check-gpg-signature
• P insane-line-length-in-source-file
  • src/ca/ualberta/stothard/cgview/includes/overlib.js line length is 562 characters (>512)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • ca/ualberta/stothard/cgview/
  • lib/
• P source-contains-prebuilt-javascript-object
  • src/ca/ualberta/stothard/cgview/includes/overlib.js line length is 562 characters (>512)
• O source-is-missing
  • src/ca/ualberta/stothard/cgview/includes/overlib.js line length is 562 characters (>512)
• I testsuite-autopkgtest-missing

• P debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libcharls1

• I symbols-file-missing-build-depends-package-field

• P debian-watch-does-not-check-gpg-signature

• P debian-watch-does-not-check-gpg-signature

• P debian-watch-does-not-check-gpg-signature

libcifti0 (1.5.1-3+b1; main)

• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libCifti.so.1.5
  • usr/lib/x86_64-linux-gnu/libCifti.so.1.5
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libCifti.so.1.5
  • usr/lib/x86_64-linux-gnu/libCifti.so.1.5

• P debian-watch-does-not-check-gpg-signature

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://circos.ca/software/download

circos

• X duplicate-files
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.10e6.txt.gz usr/share/doc/circos/examples/data/heatmap.hs.rn.10e6.txt.gz
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.20e6.txt.gz usr/share/doc/circos/examples/data/heatmap.hs.rn.20e6.txt.gz
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.50e6.txt usr/share/doc/circos/examples/data/heatmap.hs.rn.50e6.txt
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.5e6.txt.gz usr/share/doc/circos/examples/data/heatmap.hs.rn.5e6.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.arabidopsis.tair10.txt usr/share/doc/circos/examples/data/karyotype/karyotype.arabidopsis.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.chimp.pt4.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.chimp.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.drosophila.lowres.dm3.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.drosophila.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.human.hg19.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.human.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.mouse.mm10.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.mouse.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.rat.rn4.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.rat.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.rm.3.txt usr/share/doc/circos/examples/data/karyotype/karyotype.rm.txt
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/circos.1.gz
• I spelling-error-in-manpage
  • usr/share/man/man1/circos.1.gz overide override
  • usr/share/man/man1/circos.1.gz unuseable unusable

fonts-circos-symbols

• I font-outside-font-dir
  • usr/share/circos/fonts/symbols/circossymbols.otf

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://circos.ca/software/download
• P source-contains-empty-directory
  • tools/binlinks/doc/
  • tools/resample/etc/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

circos-tools

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/circos/tools/clustal2link/1/README
  • usr/share/circos/tools/clustal2link/README
  • usr/share/circos/tools/connectogram/README
  • usr/share/circos/tools/tableviewer/README
• I package-contains-empty-directory
  • usr/share/circos/tools/binlinks/doc/
  • usr/share/circos/tools/resample/etc/

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bioinformatics.hungry.com/clearcut/clearcut-([0-9.]+).tar.gz
• P file-contains-trailing-whitespace
  • debian/control (line 20)
• I testsuite-autopkgtest-missing

clearcut

• X binary-file-built-without-LFS-support
  • usr/bin/clearcut
• I hardening-no-bindnow
  • usr/bin/clearcut
  • usr/bin/clearcut
• I hardening-no-fortify-functions
  • usr/bin/clearcut
  • usr/bin/clearcut

clearcut-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/68/c8f38bc26ee538663ba37be7dc0a2b32d43fc3.debug
  • usr/lib/debug/.build-id/ab/e44ff7c76203600a4e5783ff9ede636abb8086.debug

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.xavierdidelot.xtreemhost.com/clonalframe.htm
• I testsuite-autopkgtest-missing

clonalframe

• X binary-file-built-without-LFS-support
  • usr/bin/ClonalFrame

• P debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

clonalframeml

• I hardening-no-fortify-functions
  • usr/bin/ClonalFrameML
  • usr/bin/ClonalFrameML

• P debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 10
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/clonalorigin.git
  • vcs-git https://anonscm.debian.org/git/debian-med/clonalorigin.git

clonalorigin

• X binary-file-built-without-LFS-support
  • usr/bin/warg
• W binary-without-manpage
  • usr/bin/blocksplit
  • usr/bin/blocksplit
  • usr/bin/computeMedians
  • usr/bin/computeMedians
  • usr/bin/makeMauveWargFile
  • usr/bin/makeMauveWargFile
• I spelling-error-in-binary
  • usr/bin/warg lik link
  • usr/bin/warg lik link

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/omega/clustal-omega-(.*)\.tar\.gz
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

clustalo

• X binary-file-built-without-LFS-support
  • usr/bin/clustalo
• I spelling-error-in-binary
  • usr/bin/clustalo exceded exceeded
  • usr/bin/clustalo exceded exceeded
  • usr/bin/clustalo occured occurred
  • usr/bin/clustalo occured occurred

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/download/current/clustalw-([\.\d]*).tar.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 123)
  • debian/changelog (line 155)
  • debian/changelog (line 202)
  • debian/changelog (line 274)
  • debian/changelog (line 345)
  • debian/changelog (line 377)
  • debian/changelog (line 385)
  • debian/control (line 33)
  • debian/rules (line 19)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

clustalw

• X binary-file-built-without-LFS-support
  • usr/bin/clustalw

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/download/current/clustalx-([\.\d]*).tar.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 223)
  • debian/changelog (line 294)
  • debian/changelog (line 326)
  • debian/changelog (line 334)
• I testsuite-autopkgtest-missing

clustalx

• X binary-file-built-without-LFS-support
  • usr/bin/clustalx
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/clustalx.desktop
  • usr/share/applications/clustalx.desktop
• I hardening-no-fortify-functions
  • usr/bin/clustalx
  • usr/bin/clustalx
• I spelling-error-in-binary
  • usr/bin/clustalx Pres Press

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bonsai.hgc.jp/~mdehoon/software/cluster/software.htm
• P file-contains-trailing-whitespace
  • debian/changelog (line 34)
  • debian/changelog (line 52)
  • debian/changelog (line 57)
  • debian/changelog (line 61)
  • debian/changelog (line 76)
  • debian/rules (line 23)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 23)
  • debian/rules (line 43)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

cnvkit

• W binary-without-manpage
  • usr/bin/cnvkit-cnv_annotate
  • usr/bin/cnvkit-cnv_expression_correlate
  • usr/bin/cnvkit-cnv_updater
  • usr/bin/cnvkit-cnv_ztest
  • usr/bin/cnvkit-guess_baits
  • usr/bin/cnvkit-skg_convert
  • usr/bin/cnvkit-snpfilter.sh
  • usr/bin/snpfilter.sh
• W executable-not-elf-or-script
  • usr/bin/cnvkit-cnv_expression_correlate
• W manpage-has-errors-from-man
  • usr/share/man/man1/cnvkit.1.gz 8: warning [p 1, 1.7i]: cannot adjust line
• W script-with-language-extension
  • usr/bin/cnvkit-snpfilter.sh
  • usr/bin/snpfilter.sh
• I spelling-error-in-manpage
  • usr/share/man/man1/cnvkit-batch.1.gz excecutable executable
  • usr/share/man/man1/cnvkit-segment.1.gz excecutable executable

• O debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.2.1)
• P package-uses-deprecated-source-override-location
• I testsuite-autopkgtest-missing

codonw

• X binary-file-built-without-LFS-support
  • usr/bin/codonw
• I hardening-no-bindnow
  • usr/bin/codonw
  • usr/bin/codonw

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 89)

ncoils

• X binary-file-built-without-LFS-support
  • usr/bin/ncoils
• I hardening-no-fortify-functions
  • usr/bin/ncoils
  • usr/bin/ncoils

• P debian-watch-does-not-check-gpg-signature
• O debian-watch-file-should-mangle-version
  • line 3
• P source-contains-empty-directory
  • bin/
  • lib/

concavity

• X binary-file-built-without-LFS-support
  • usr/bin/concavity
• X non-consecutive-debian-revision
  • 0.1+dfsg.1-4 -> 0.1+dfsg.1-2
  • 0.1+dfsg.1-4 -> 0.1+dfsg.1-2

• P debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • tools/Darwin/
  • tools/Linux/
  • tools/win32/
• X upstream-metadata-file-is-missing

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 28)
  • debian/changelog (line 31)
  • debian/rules (line 55)

conservation-code

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://gforge.inria.fr/frs/?group_id=3008
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

crac

• W binary-without-manpage
  • usr/bin/crac-client
  • usr/bin/crac-index
• X duplicate-files
  • usr/share/doc/crac/examples/test_f/bug/bug-15677-genome.conf usr/share/doc/crac/examples/test_f/bug/bug-16581-genome.conf
  • usr/share/doc/crac/examples/test_f/bug/bug-15677-genome.ssa.gz usr/share/doc/crac/examples/test_f/bug/bug-16581-genome.ssa.gz
  • usr/share/doc/crac/examples/test_f/index_genomes.sh.trs usr/share/doc/crac/examples/test_f/launch_sg.sh.trs usr/share/doc/crac/examples/test_f/test_index.sh.trs
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/crac.1.gz
• I spelling-error-in-binary
  • usr/bin/crac Erorr Error
  • usr/bin/crac alignement alignment
  • usr/bin/crac informations information
  • usr/bin/crac-index informations information
• I spelling-error-in-copyright
  • therefor therefore
• I spelling-error-in-manpage
  • usr/share/man/man1/crac.1.gz alignement alignment
  • usr/share/man/man1/crac.1.gz differents different
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz softwares software

• W ancient-python-version-field
  • x-python-version 2.6
  • x-python3-version 3.2
• P debian-control-has-unusual-field-spacing
  • line 27
• P debian-watch-does-not-check-gpg-signature

ctdconverter

• W manpage-has-errors-from-man
  • usr/share/man/man1/CTDConverter.1.gz 75: warning [p 2, 4.2i]: can't break line

• W ancient-python-version-field
  • x-python-version 2.6
  • x-python3-version 3.2
• P debian-watch-does-not-check-gpg-signature
• X upstream-metadata-file-is-missing
• I vcs-field-not-canonical
  • https://salsa.debian.org/med-team/ctdopts.git https://salsa.debian.org/med-team/ctdopts

• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 186)
  • debian/changelog (line 187)
  • debian/changelog (line 228)
  • debian/changelog (line 252)
  • debian/changelog (line 258)
  • debian/changelog (line 266)
  • debian/changelog (line 272)
  • debian/changelog (line 280)
  • debian/changelog (line 282)
  • debian/changelog (line 302)
  • debian/changelog (line 304)
  • debian/changelog (line 316)
  • debian/changelog (line 320)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

ctn

• X binary-file-built-without-LFS-support
  • usr/bin/archive_agent
  • usr/bin/archive_cleaner
  • usr/bin/archive_server
  • usr/bin/clone_study
  • usr/bin/commit_agent
  • usr/bin/create_greyscale_module
  • usr/bin/create_print_entry
  • usr/bin/ctndisp
  • usr/bin/ctnnetwork
  • usr/bin/dcm_add_fragments
  • usr/bin/dcm_create_object
  • usr/bin/dcm_ctnto10
  • usr/bin/dcm_diff
  • usr/bin/dcm_dump_compressed
  • usr/bin/dcm_dump_element
  • usr/bin/dcm_dump_file
  • usr/bin/dcm_make_object
  • usr/bin/dcm_map_to_8
  • usr/bin/dcm_mask_image
  • usr/bin/dcm_modify_elements
  • usr/bin/dcm_modify_object
  • usr/bin/dcm_print_dictionary
  • usr/bin/dcm_resize
  • usr/bin/dcm_rm_element
  • usr/bin/dcm_rm_group
  • usr/bin/dcm_snoop
  • usr/bin/dcm_strip_odd_groups
  • usr/bin/dcm_template
  • usr/bin/dcm_to_html
  • usr/bin/dcm_to_text
  • usr/bin/dcm_verify
  • usr/bin/dcm_vr_patterns
  • usr/bin/dcm_x_disp
  • usr/bin/dicom_echo
  • usr/bin/dump_commit_requests
  • usr/bin/enq_ctndisp
  • usr/bin/enq_ctnnetwork
  • usr/bin/ex1_initiator
  • usr/bin/ex2_initiator
  • usr/bin/ex3_acceptor
  • usr/bin/ex3_initiator
  • usr/bin/ex4_acceptor
  • usr/bin/ex4_initiator
  • usr/bin/fillImageDB
  • usr/bin/fillRSA
  • usr/bin/fillRSAImpInterp
  • usr/bin/fis_server
  • usr/bin/gqinitq
  • usr/bin/gqkillq
  • usr/bin/icon_append_file
  • usr/bin/icon_append_index
  • usr/bin/icon_dump_file
  • usr/bin/icon_dump_index
  • usr/bin/image_server
  • usr/bin/kill_ctndisp
  • usr/bin/kill_ctnnetwork
  • usr/bin/load_control
  • usr/bin/mwlQuery
  • usr/bin/pq_ctndisp
  • usr/bin/pq_ctnnetwork
  • usr/bin/print_client
  • usr/bin/print_mgr
  • usr/bin/print_server
  • usr/bin/print_server_display
  • usr/bin/ris_gateway
  • usr/bin/send_image
  • usr/bin/send_results
  • usr/bin/send_study
  • usr/bin/simple_pacs
  • usr/bin/simple_storage
  • usr/bin/snp_to_files
  • usr/bin/storage_classes
  • usr/bin/storage_commit
• I spelling-error-in-binary
  • usr/bin/archive_agent tranport transport
  • usr/bin/archive_agent tranport transport
  • usr/bin/archive_agent uniqe unique
  • usr/bin/archive_agent uniqe unique
  • usr/bin/archive_cleaner tranport transport
  • usr/bin/archive_cleaner tranport transport
  • usr/bin/archive_cleaner uniqe unique
  • usr/bin/archive_cleaner uniqe unique
  • usr/bin/archive_server tranport transport
  • usr/bin/archive_server tranport transport
  • usr/bin/archive_server uniqe unique
  • usr/bin/archive_server uniqe unique
  • usr/bin/clone_study uniqe unique
  • usr/bin/clone_study uniqe unique
  • usr/bin/commit_agent tranport transport
  • usr/bin/commit_agent tranport transport
  • usr/bin/commit_agent uniqe unique
  • usr/bin/commit_agent uniqe unique
  • usr/bin/create_print_entry tranport transport
  • usr/bin/create_print_entry tranport transport
  • usr/bin/create_print_entry uniqe unique
  • usr/bin/create_print_entry uniqe unique
  • usr/bin/dcm_modify_object decription description
  • usr/bin/dcm_modify_object decription description
  • usr/bin/dcm_print_dictionary uniqe unique
  • usr/bin/dcm_print_dictionary uniqe unique
  • usr/bin/dcm_snoop tranport transport
  • usr/bin/dcm_snoop tranport transport
  • usr/bin/dcm_snoop uniqe unique
  • usr/bin/dcm_snoop uniqe unique
  • usr/bin/dicom_echo pres press
  • usr/bin/dicom_echo tranport transport
  • usr/bin/dicom_echo tranport transport
  • usr/bin/dicom_echo uniqe unique
  • usr/bin/dicom_echo uniqe unique
  • usr/bin/ex1_initiator tranport transport
  • usr/bin/ex1_initiator tranport transport
  • usr/bin/ex1_initiator uniqe unique
  • usr/bin/ex1_initiator uniqe unique
  • usr/bin/ex2_initiator tranport transport
  • usr/bin/ex2_initiator tranport transport
  • usr/bin/ex2_initiator uniqe unique
  • usr/bin/ex2_initiator uniqe unique
  • usr/bin/ex3_acceptor tranport transport
  • usr/bin/ex3_acceptor tranport transport
  • usr/bin/ex3_acceptor uniqe unique
  • usr/bin/ex3_acceptor uniqe unique
  • usr/bin/ex3_initiator tranport transport
  • usr/bin/ex3_initiator tranport transport
  • usr/bin/ex3_initiator uniqe unique
  • usr/bin/ex3_initiator uniqe unique
  • usr/bin/ex4_acceptor tranport transport
  • usr/bin/ex4_acceptor tranport transport
  • usr/bin/ex4_acceptor uniqe unique
  • usr/bin/ex4_acceptor uniqe unique
  • usr/bin/ex4_initiator tranport transport
  • usr/bin/ex4_initiator tranport transport
  • usr/bin/ex4_initiator uniqe unique
  • usr/bin/ex4_initiator uniqe unique
  • usr/bin/fillRSA uniqe unique
  • usr/bin/fillRSA uniqe unique
  • usr/bin/fis_server tranport transport
  • usr/bin/fis_server tranport transport
  • usr/bin/fis_server uniqe unique
  • usr/bin/fis_server uniqe unique
  • usr/bin/image_server tranport transport
  • usr/bin/image_server tranport transport
  • usr/bin/image_server uniqe unique
  • usr/bin/image_server uniqe unique
  • usr/bin/mwlQuery tranport transport
  • usr/bin/mwlQuery tranport transport
  • usr/bin/mwlQuery uniqe unique
  • usr/bin/mwlQuery uniqe unique
  • usr/bin/print_client Sofware Software
  • usr/bin/print_client Sofware Software
  • usr/bin/print_client pres press
  • usr/bin/print_client tranport transport
  • usr/bin/print_client tranport transport
  • usr/bin/print_client uniqe unique
  • usr/bin/print_client uniqe unique
  • usr/bin/print_mgr Sofware Software
  • usr/bin/print_mgr Sofware Software
  • usr/bin/print_mgr pres press
  • usr/bin/print_mgr tranport transport
  • usr/bin/print_mgr tranport transport
  • usr/bin/print_mgr uniqe unique
  • usr/bin/print_mgr uniqe unique
  • usr/bin/print_server Sofware Software
  • usr/bin/print_server Sofware Software
  • usr/bin/print_server tranport transport
  • usr/bin/print_server tranport transport
  • usr/bin/print_server uniqe unique
  • usr/bin/print_server uniqe unique
  • usr/bin/print_server_display Sofware Software
  • usr/bin/print_server_display Sofware Software
  • usr/bin/print_server_display successfull successful
  • usr/bin/print_server_display successfull successful
  • usr/bin/ris_gateway tranport transport
  • usr/bin/ris_gateway tranport transport
  • usr/bin/ris_gateway uniqe unique
  • usr/bin/ris_gateway uniqe unique
  • usr/bin/send_image sensitve sensitive
  • usr/bin/send_image sensitve sensitive
  • usr/bin/send_image tranport transport
  • usr/bin/send_image tranport transport
  • usr/bin/send_image uniqe unique
  • usr/bin/send_image uniqe unique
  • usr/bin/send_results tranport transport
  • usr/bin/send_results tranport transport
  • usr/bin/send_results uniqe unique
  • usr/bin/send_results uniqe unique
  • usr/bin/send_study tranport transport
  • usr/bin/send_study tranport transport
  • usr/bin/send_study uniqe unique
  • usr/bin/send_study uniqe unique
  • usr/bin/simple_pacs tranport transport
  • usr/bin/simple_pacs tranport transport
  • usr/bin/simple_pacs uniqe unique
  • usr/bin/simple_pacs uniqe unique
  • usr/bin/simple_storage tranport transport
  • usr/bin/simple_storage tranport transport
  • usr/bin/simple_storage uniqe unique
  • usr/bin/simple_storage uniqe unique
  • usr/bin/storage_classes tranport transport
  • usr/bin/storage_classes tranport transport
  • usr/bin/storage_classes uniqe unique
  • usr/bin/storage_classes uniqe unique
  • usr/bin/storage_commit tranport transport
  • usr/bin/storage_commit tranport transport
  • usr/bin/storage_commit uniqe unique
  • usr/bin/storage_commit uniqe unique

• P debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://ctsim.org/download.html
• P file-contains-trailing-whitespace
  • debian/changelog (line 167)
  • debian/changelog (line 179)
  • debian/changelog (line 210)
  • debian/changelog (line 243)
  • debian/changelog (line 342)
  • debian/changelog (line 418)
  • debian/changelog (line 424)
  • debian/changelog (line 483)
  • debian/changelog (line 494)
  • debian/changelog (line 512)
  • debian/changelog (line 523)
  • debian/changelog (line 545)
  • debian/changelog (line 565)
  • debian/changelog (line 622)
  • debian/changelog (line 638)
  • debian/control (line 41)
  • debian/control (line 44)
  • debian/control (line 56)
• P package-uses-old-debhelper-compat-version
  • 10
• X upstream-metadata-file-is-missing

ctsim

• X binary-file-built-without-LFS-support
  • usr/bin/ctsim
  • usr/bin/ctsimtext

ctsim-doc

• W privacy-breach-generic
  • usr/share/doc/ctsim-doc/examples/simulate.html [<link rel="stylesheet" href="http://www.ctsim.org/main.css" type="text/css">] (http://www.ctsim.org/main.css)

• P debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

cufflinks (2.2.1+dfsg.1-3+b1; non-free)

• X binary-file-built-without-LFS-support
  • usr/bin/compress_gtf
  • usr/bin/cuffcompare
  • usr/bin/cuffdiff
  • usr/bin/cufflinks
  • usr/bin/cuffnorm
  • usr/bin/cuffquant
  • usr/bin/gffread
  • usr/bin/gtf_to_sam
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
  • (Depends: python)
• I spelling-error-in-binary
  • usr/bin/cuffdiff constrasts contrasts
  • usr/bin/cuffdiff constrasts contrasts
• I spelling-error-in-manpage
  • usr/share/man/man1/cuffdiff.1.gz constrasts contrasts
  • usr/share/man/man1/cuffdiff.1.gz constrasts contrasts

• W ancient-python-version-field
  • x-python-version 2.7
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 86)
  • debian/rules (line 26)
• I override_dh_auto_test-does-not-check-DEB_BUILD_OPTIONS
  • (line 19)
• P package-uses-old-debhelper-compat-version
  • 10
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/cwltool.git
  • vcs-git https://anonscm.debian.org/git/debian-med/cwltool.git

cwltool

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• W executable-not-elf-or-script
  • usr/lib/python2.7/dist-packages/cwltool/tests/wf/count-lines1-wf.cwl
  • usr/lib/python2.7/dist-packages/cwltool/tests/wf/scatter-job2.json
• I package-contains-documentation-outside-usr-share-doc
  • usr/lib/python2.7/dist-packages/cwltool/schemas/draft-3/README.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/draft-3/concepts.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/draft-3/contrib.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/draft-3/intro.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/draft-3/invocation.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/draft-3/salad/schema_salad/metaschema/import_include.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/draft-3/salad/schema_salad/metaschema/salad.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/draft-3/userguide-intro.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.0/README.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.0/concepts.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.0/contrib.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.0/intro.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.0/invocation.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.0/salad/schema_salad/metaschema/import_include.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.0/salad/schema_salad/metaschema/salad.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.0/userguide-intro.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.1.0-dev1/README.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.1.0-dev1/concepts.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.1.0-dev1/contrib.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.1.0-dev1/intro.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.1.0-dev1/invocation.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/import_include.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/salad.md
  • usr/lib/python2.7/dist-packages/cwltool/schemas/v1.1.0-dev1/userguide-intro.md
• W script-not-executable
  • usr/lib/python2.7/dist-packages/cwltool/tests/wf/cat-tool.cwl
  • usr/lib/python2.7/dist-packages/cwltool/tests/wf/iwdr-entry.cwl
  • usr/lib/python2.7/dist-packages/test.txt
• E unknown-file-in-python-module-directory
  • usr/lib/python2.7/dist-packages/output
  • usr/lib/python2.7/dist-packages/response.txt
  • usr/lib/python2.7/dist-packages/test.txt
  • usr/lib/python2.7/dist-packages/value

• W debian-source-options-has-custom-compression-settings
  • compression = "bzip2" (line 2)
  • compression-level = 7 (line 3)
• P debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 106)
  • debian/changelog (line 139)
  • debian/changelog (line 145)
  • debian/changelog (line 150)
  • debian/changelog (line 158)
  • debian/changelog (line 160)
  • debian/changelog (line 162)
  • debian/changelog (line 166)
  • debian/changelog (line 167)
  • debian/changelog (line 204)
  • debian/changelog (line 206)
  • debian/changelog (line 94)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/cycle.git
  • vcs-git https://anonscm.debian.org/git/debian-med/cycle.git

cycle

• P debian-changelog-line-too-short
  • DEP3 (line 9)
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I possible-documentation-but-no-doc-base-registration

• P debian-watch-does-not-check-gpg-signature
• P package-uses-old-debhelper-compat-version
  • 10

python-cyvcf2

• X binary-file-built-without-LFS-support
  • usr/lib/python2.7/dist-packages/cyvcf2/cyvcf2.i386-linux-gnu.so
• I spelling-error-in-binary
  • usr/lib/python2.7/dist-packages/cyvcf2/cyvcf2.i386-linux-gnu.so UKNOWN UNKNOWN
  • usr/lib/python2.7/dist-packages/cyvcf2/cyvcf2.i386-linux-gnu.so wether whether
  • usr/lib/python2.7/dist-packages/cyvcf2/cyvcf2.x86_64-linux-gnu.so UKNOWN UNKNOWN
  • usr/lib/python2.7/dist-packages/cyvcf2/cyvcf2.x86_64-linux-gnu.so wether whether
• I wrong-section-according-to-package-name
  • python-cyvcf2 => python
  • python-cyvcf2 => python

python3-cyvcf2

• X binary-file-built-without-LFS-support
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-36m-i386-linux-gnu.so
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-37m-i386-linux-gnu.so
• W binary-without-manpage
  • usr/bin/cyvcf2
  • usr/bin/cyvcf2
• X library-package-name-for-application
  • usr/bin/cyvcf2
  • usr/bin/cyvcf2
• I spelling-error-in-binary
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-36m-i386-linux-gnu.so UKNOWN UNKNOWN
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-36m-i386-linux-gnu.so wether whether
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-36m-x86_64-linux-gnu.so UKNOWN UNKNOWN
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-36m-x86_64-linux-gnu.so wether whether
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-37m-i386-linux-gnu.so UKNOWN UNKNOWN
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-37m-i386-linux-gnu.so wether whether
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-37m-x86_64-linux-gnu.so UKNOWN UNKNOWN
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-37m-x86_64-linux-gnu.so wether whether
• I wrong-section-according-to-package-name
  • python3-cyvcf2 => python
  • python3-cyvcf2 => python

• P debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

daligner

• X binary-file-built-without-LFS-support
  • usr/bin/HPC.daligner
  • usr/bin/LAcat
  • usr/bin/LAcheck
  • usr/bin/LAdump
  • usr/bin/LAindex
  • usr/bin/LAmerge
  • usr/bin/LAshow
  • usr/bin/LAsort
  • usr/bin/LAsplit
  • usr/bin/daligner
• I spelling-error-in-binary
  • usr/bin/HPC.daligner occurences occurrences
  • usr/bin/HPC.daligner occurences occurrences
  • usr/bin/HPC.daligner previos previous
  • usr/bin/HPC.daligner previos previous
  • usr/bin/LAcat occurences occurrences
  • usr/bin/LAcat occurences occurrences
  • usr/bin/LAcat previos previous
  • usr/bin/LAcat previos previous
  • usr/bin/LAcheck occurences occurrences
  • usr/bin/LAcheck occurences occurrences
  • usr/bin/LAcheck previos previous
  • usr/bin/LAcheck previos previous
  • usr/bin/LAdump occurences occurrences
  • usr/bin/LAdump occurences occurrences
  • usr/bin/LAdump previos previous
  • usr/bin/LAdump previos previous
  • usr/bin/LAindex occurences occurrences
  • usr/bin/LAindex occurences occurrences
  • usr/bin/LAindex previos previous
  • usr/bin/LAindex previos previous
  • usr/bin/LAmerge occurences occurrences
  • usr/bin/LAmerge occurences occurrences
  • usr/bin/LAmerge previos previous
  • usr/bin/LAmerge previos previous
  • usr/bin/LAshow occurences occurrences
  • usr/bin/LAshow occurences occurrences
  • usr/bin/LAshow previos previous
  • usr/bin/LAshow previos previous
  • usr/bin/LAsort occurences occurrences
  • usr/bin/LAsort occurences occurrences
  • usr/bin/LAsort previos previous
  • usr/bin/LAsort previos previous
  • usr/bin/LAsplit occurences occurrences
  • usr/bin/LAsplit occurences occurrences
  • usr/bin/LAsplit previos previous
  • usr/bin/LAsplit previos previous
  • usr/bin/daligner occurences occurrences
  • usr/bin/daligner occurences occurrences
  • usr/bin/daligner previos previous
  • usr/bin/daligner previos previous

• P debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

dascrubber

• X binary-file-built-without-LFS-support
  • usr/bin/DAScover
  • usr/bin/DASedit
  • usr/bin/DASmap
  • usr/bin/DASpatch
  • usr/bin/DASqv
  • usr/bin/DASrealign
  • usr/bin/DAStrim
  • usr/bin/REPcover
  • usr/bin/REPqv
  • usr/bin/REPtrim
• I spelling-error-in-binary
  • usr/bin/DAScover occurences occurrences
  • usr/bin/DAScover occurences occurrences
  • usr/bin/DAScover previos previous
  • usr/bin/DAScover previos previous
  • usr/bin/DASedit occurences occurrences
  • usr/bin/DASedit occurences occurrences
  • usr/bin/DASedit previos previous
  • usr/bin/DASedit previos previous
  • usr/bin/DASmap occurences occurrences
  • usr/bin/DASmap occurences occurrences
  • usr/bin/DASmap previos previous
  • usr/bin/DASmap previos previous
  • usr/bin/DASpatch occurences occurrences
  • usr/bin/DASpatch occurences occurrences
  • usr/bin/DASpatch previos previous
  • usr/bin/DASpatch previos previous
  • usr/bin/DASqv occurences occurrences
  • usr/bin/DASqv occurences occurrences
  • usr/bin/DASqv previos previous
  • usr/bin/DASqv previos previous
  • usr/bin/DASrealign occurences occurrences
  • usr/bin/DASrealign occurences occurrences
  • usr/bin/DASrealign previos previous
  • usr/bin/DASrealign previos previous
  • usr/bin/DAStrim occurences occurrences
  • usr/bin/DAStrim occurences occurrences
  • usr/bin/DAStrim previos previous
  • usr/bin/DAStrim previos previous
  • usr/bin/REPcover occurences occurrences
  • usr/bin/REPcover occurences occurrences
  • usr/bin/REPcover previos previous
  • usr/bin/REPcover previos previous
  • usr/bin/REPqv occurences occurrences
  • usr/bin/REPqv occurences occurrences
  • usr/bin/REPqv previos previous
  • usr/bin/REPqv previos previous
  • usr/bin/REPtrim occurences occurrences
  • usr/bin/REPtrim occurences occurrences
  • usr/bin/REPtrim previos previous
  • usr/bin/REPtrim previos previous