Debian Med Packaging Team

At the time of the last Lintian run, the following possible problems were found in packages maintained by Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>, listed by source package. See also the report showing only errors and warnings. Also see their QA overview.

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

abacas

• W manpage-has-errors-from-man
  • usr/share/man/man1/abacas.1.gz 20: warning [p 1, 3.0i, div 'an-div', 0.0i]: cannot adjust line

• X debian-watch-does-not-check-gpg-signature

abyss

• X binary-file-built-without-LFS-support
  • usr/lib/abyss/KAligner
  • usr/lib/abyss/PathConsensus
  • usr/lib/abyss/abyss-align

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://ftp.sanger.ac.uk/pub/project/acedb/SUPPORTED/ACEDB-source\.([0-9.]+)\.tar\.gz
• P source-contains-empty-directory
  • waction/
  • wdemo/database/
  • wdoc/Interfaces/
  • wemap/
  • whelp/syntax/
  • wsyn/
  • wt1/
• I testsuite-autopkgtest-missing

acedb-other

• X binary-file-built-without-LFS-support
  • usr/bin/efetch [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/efetch [amd64, i386]

• X debian-watch-does-not-check-gpg-signature

adapterremoval

• X binary-file-built-without-LFS-support
  • usr/bin/AdapterRemoval
• I hardening-no-fortify-functions
  • usr/bin/AdapterRemoval
• W privacy-breach-generic
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)
• I spelling-error-in-binary
  • usr/bin/AdapterRemoval pres press
• I spelling-error-in-manpage
  • usr/share/man/man1/AdapterRemoval.1.gz ambigious ambiguous
  • usr/share/man/man1/AdapterRemoval.1.gz succesfully successfully

• X debian-watch-does-not-check-gpg-signature

adapterremoval

• I hardening-no-fortify-functions
  • usr/bin/AdapterRemoval
• W privacy-breach-generic
  • usr/share/doc/adapterremoval/README.html [<img alt="coveralls" src="https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg" />] (https://img.shields.io/coveralls/mikkelschubert/adapterremoval.svg)
  • usr/share/doc/adapterremoval/README.html [<img alt="travis" src="https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg" />] (https://img.shields.io/travis/mikkelschubert/adapterremoval/master.svg)
• I spelling-error-in-manpage
  • usr/share/man/man1/AdapterRemoval.1.gz ambigious ambiguous
  • usr/share/man/man1/AdapterRemoval.1.gz succesfully successfully

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

adun-core

• X binary-file-built-without-LFS-support
  • usr/bin/AdunServer
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
  • usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1
  • usr/lib/GNUstep/Frameworks/ULFramework.framework/Versions/0/libULFramework.so.0.6
• X shlib-calls-exit
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13
  • usr/lib/adun.app/libXMLLib.so.0.1
  • usr/lib/adun.app/libadun_base.so.0.0.1
• I spelling-error-in-binary
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 accesible accessible
  • usr/lib/GNUstep/Frameworks/AdunKernel.framework/Versions/0/libAdunKernel.so.0.13 onthe on the
  • usr/lib/GNUstep/Frameworks/MolTalk.framework/Versions/3/libMolTalk.so.3.0.1 CONECT CONNECT

adun.app

• X binary-file-built-without-LFS-support
  • usr/lib/GNUstep/Applications/UL.app/UL
• I wrong-section-according-to-package-name
  • adun.app => gnustep

• I debian-rules-parses-dpkg-parsechangelog
  • (line 5)
• O debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)
• P package-uses-deprecated-source-override-location
• P source-contains-empty-directory
  • data/misc/amel-ogs-vs-ncbi-parseval-html/vendor/
  • data/share/vendor/

aegean

• X binary-file-built-without-LFS-support
  • usr/bin/canon-gff3
  • usr/bin/gaeval
  • usr/bin/locuspocus
  • usr/bin/parseval
  • usr/bin/pmrna
  • usr/bin/tidygff3
  • usr/bin/xtractore

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)
• I testsuite-autopkgtest-missing

aeskulap

• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/aeskulap.desktop [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.aevol.fr/download/
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-does-not-install-examples
  • examples/
• I testsuite-autopkgtest-missing

aevol (5.0-2+b1; main)

• X binary-file-built-without-LFS-support
  • usr/bin/aevol_create [amd64, i386]
  • usr/bin/aevol_misc_ancestor_robustness [amd64, i386]
  • usr/bin/aevol_misc_ancestor_stats [amd64, i386]
  • usr/bin/aevol_misc_create_eps [amd64, i386]
  • usr/bin/aevol_misc_extract [amd64, i386]
  • usr/bin/aevol_misc_lineage [amd64, i386]
  • usr/bin/aevol_misc_mutagenesis [amd64, i386]
  • usr/bin/aevol_misc_robustness [amd64, i386]
  • usr/bin/aevol_misc_view [amd64, i386]
  • usr/bin/aevol_modify [amd64, i386]
  • usr/bin/aevol_propagate [amd64, i386]
  • usr/bin/aevol_run [amd64, i386]
• W binary-without-manpage
  • usr/bin/aevol_misc_ancestor_robustness [amd64, i386]
  • usr/bin/aevol_misc_mutagenesis [amd64, i386]
• W manpage-has-errors-from-man
  • usr/share/man/man1/aevol_misc_ancestor_stats.1.gz 1: warning: macro '/"test' not defined [amd64, i386]
  • usr/share/man/man1/aevol_misc_view.1.gz 1: warning: macro '/"test' not defined [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/aevol_create alignement alignment [amd64, i386]
  • usr/bin/aevol_create coul could [amd64, i386]
  • usr/bin/aevol_create occured occurred [amd64, i386]
  • usr/bin/aevol_create paramater parameter [amd64, i386]
  • usr/bin/aevol_create recepient recipient [amd64, i386]
  • usr/bin/aevol_misc_ancestor_robustness alignement alignment [amd64, i386]
  • usr/bin/aevol_misc_ancestor_robustness coul could [amd64, i386]
  • usr/bin/aevol_misc_ancestor_robustness occured occurred [amd64, i386]
  • usr/bin/aevol_misc_ancestor_robustness paramater parameter [amd64, i386]
  • usr/bin/aevol_misc_ancestor_robustness recepient recipient [amd64, i386]
  • usr/bin/aevol_misc_ancestor_stats alignement alignment [amd64, i386]
  • usr/bin/aevol_misc_ancestor_stats coul could [amd64, i386]
  • usr/bin/aevol_misc_ancestor_stats occured occurred [amd64, i386]
  • usr/bin/aevol_misc_ancestor_stats paramater parameter [amd64, i386]
  • usr/bin/aevol_misc_ancestor_stats recepient recipient [amd64, i386]
  • usr/bin/aevol_misc_create_eps alignement alignment [amd64, i386]
  • usr/bin/aevol_misc_create_eps coul could [amd64, i386]
  • usr/bin/aevol_misc_create_eps occured occurred [amd64, i386]
  • usr/bin/aevol_misc_create_eps paramater parameter [amd64, i386]
  • usr/bin/aevol_misc_create_eps recepient recipient [amd64, i386]
  • usr/bin/aevol_misc_extract alignement alignment [amd64, i386]
  • usr/bin/aevol_misc_extract coul could [amd64, i386]
  • usr/bin/aevol_misc_extract occured occurred [amd64, i386]
  • usr/bin/aevol_misc_extract paramater parameter [amd64, i386]
  • usr/bin/aevol_misc_extract recepient recipient [amd64, i386]
  • usr/bin/aevol_misc_lineage alignement alignment [amd64, i386]
  • usr/bin/aevol_misc_lineage coul could [amd64, i386]
  • usr/bin/aevol_misc_lineage occured occurred [amd64, i386]
  • usr/bin/aevol_misc_lineage paramater parameter [amd64, i386]
  • usr/bin/aevol_misc_lineage recepient recipient [amd64, i386]
  • usr/bin/aevol_misc_mutagenesis alignement alignment [amd64, i386]
  • usr/bin/aevol_misc_mutagenesis coul could [amd64, i386]
  • usr/bin/aevol_misc_mutagenesis occured occurred [amd64, i386]
  • usr/bin/aevol_misc_mutagenesis paramater parameter [amd64, i386]
  • usr/bin/aevol_misc_mutagenesis recepient recipient [amd64, i386]
  • usr/bin/aevol_misc_robustness alignement alignment [amd64, i386]
  • usr/bin/aevol_misc_robustness coul could [amd64, i386]
  • usr/bin/aevol_misc_robustness occured occurred [amd64, i386]
  • usr/bin/aevol_misc_robustness paramater parameter [amd64, i386]
  • usr/bin/aevol_misc_robustness recepient recipient [amd64, i386]
  • usr/bin/aevol_misc_view alignement alignment [amd64, i386]
  • usr/bin/aevol_misc_view coul could [amd64, i386]
  • usr/bin/aevol_misc_view occured occurred [amd64, i386]
  • usr/bin/aevol_misc_view paramater parameter [amd64, i386]
  • usr/bin/aevol_misc_view recepient recipient [amd64, i386]
  • usr/bin/aevol_modify alignement alignment [amd64, i386]
  • usr/bin/aevol_modify coul could [amd64, i386]
  • usr/bin/aevol_modify modifed modified [amd64, i386]
  • usr/bin/aevol_modify occured occurred [amd64, i386]
  • usr/bin/aevol_modify paramater parameter [amd64, i386]
  • usr/bin/aevol_modify recepient recipient [amd64, i386]
  • usr/bin/aevol_propagate alignement alignment [amd64, i386]
  • usr/bin/aevol_propagate coul could [amd64, i386]
  • usr/bin/aevol_propagate occured occurred [amd64, i386]
  • usr/bin/aevol_propagate paramater parameter [amd64, i386]
  • usr/bin/aevol_propagate recepient recipient [amd64, i386]
  • usr/bin/aevol_run alignement alignment [amd64, i386]
  • usr/bin/aevol_run coul could [amd64, i386]
  • usr/bin/aevol_run occured occurred [amd64, i386]
  • usr/bin/aevol_run paramater parameter [amd64, i386]
  • usr/bin/aevol_run recepient recipient [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://johnhommer.com/academic/code/aghermann/source/aghermann-([\d\.]+).tar.xz
• P source-contains-empty-directory
  • m4/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

aghermann

• X binary-file-built-without-LFS-support
  • usr/bin/agh-profile-gen
  • usr/bin/aghermann
  • usr/bin/edfcat
  • usr/bin/edfhed
  • usr/bin/edfhed-gtk
  • usr/lib/i386-linux-gnu/aghermann/libmetrics.so
  • usr/lib/i386-linux-gnu/aghermann/libsigfile.so
• I hardening-no-bindnow
  • usr/bin/agh-profile-gen
  • usr/bin/aghermann
  • usr/bin/edfcat
  • usr/bin/edfhed
  • usr/bin/edfhed-gtk
  • usr/lib/i386-linux-gnu/aghermann/libmetrics.so
  • usr/lib/i386-linux-gnu/aghermann/libsigfile.so
  • usr/lib/i386-linux-gnu/aghermann/libsigproc.so
  • usr/lib/x86_64-linux-gnu/aghermann/libmetrics.so
  • usr/lib/x86_64-linux-gnu/aghermann/libsigfile.so
  • usr/lib/x86_64-linux-gnu/aghermann/libsigproc.so
• I spelling-error-in-binary
  • usr/bin/aghermann unintialized uninitialized
  • usr/lib/i386-linux-gnu/aghermann/libsigproc.so Unitialized Uninitialized

• X debian-watch-does-not-check-gpg-signature

alien-hunter

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• W package-installs-java-bytecode
  • usr/share/alien_hunter/ChangepointLeft$1.class
  • usr/share/alien_hunter/ChangepointLeft.class
  • usr/share/alien_hunter/ChangepointRight$1.class
  • usr/share/alien_hunter/ChangepointRight.class

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 132)
  • debian/changelog (line 134)
  • debian/changelog (line 244)
  • debian/changelog (line 58)
• I testsuite-autopkgtest-missing

altree (1.3.1-7+b1; main)

• I hardening-no-bindnow
  • usr/lib/i386-linux-gnu/perl5/5.28/auto/ALTree/CUtils/CUtils.so
  • usr/lib/x86_64-linux-gnu/perl5/5.28/auto/ALTree/CUtils/CUtils.so
• I spelling-error-in-manpage
  • usr/share/man/man1/altree.1p.gz allows to allows one to

altree-examples

• X duplicate-files
  • usr/share/doc/altree-examples/create_file/phy-paml_file/NUM usr/share/doc/altree-examples/create_file/phy-paml_file/nb_cas_control.txt usr/share/doc/altree-examples/paml/unrooted_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/phylip/ancestor_absent/association/nb_cas_controls.txt usr/share/doc/altree-examples/phylip/outgroup_absent/association/nb_cas_controls.txt
  • usr/share/doc/altree-examples/create_file/phy-paml_file/trio.phy usr/share/doc/altree-examples/create_file/phy-paml_file/trio.prephy
  • usr/share/doc/altree-examples/paml/tree_building_using_phyML/trio2.phy usr/share/doc/altree-examples/paml/unrooted_absent/association/trio2.phy usr/share/doc/altree-examples/paml/unrooted_present/association/trio2.phy usr/share/doc/altree-examples/paml/unrooted_present/localisation/trio2.phy
  • usr/share/doc/altree-examples/paml/tree_building_using_phyML/trio2.phy_phyml_tree.txt usr/share/doc/altree-examples/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt usr/share/doc/altree-examples/paml/unrooted_present/association/trio2.phy_phyml_tree.txt usr/share/doc/altree-examples/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt
  • usr/share/doc/altree-examples/paml/unrooted_absent/association/baseml.ctl usr/share/doc/altree-examples/paml/unrooted_present/association/baseml.ctl
  • usr/share/doc/altree-examples/paml/unrooted_absent/association/rst1 usr/share/doc/altree-examples/paml/unrooted_present/association/rst1 usr/share/doc/altree-examples/paml/unrooted_present/localisation/rst1
  • usr/share/doc/altree-examples/paml/unrooted_present/association/nb_cas_control.txt usr/share/doc/altree-examples/paml/unrooted_present/localisation/nb_cas_controls.txt
  • usr/share/doc/altree-examples/paup/ancestor_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/ancestor_absent/localisation/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_absent/localisation/nb_cas_control.txt usr/share/doc/altree-examples/paup/unrooted_absent/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/unrooted_absent/localisation/nb_cas_control.txt
  • usr/share/doc/altree-examples/paup/ancestor_present/association/caco.paup usr/share/doc/altree-examples/paup/ancestor_present/localisation/caco.paup
  • usr/share/doc/altree-examples/paup/ancestor_present/localisation/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_present/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/outgr_present/localisation/nb_cas_control.txt
  • usr/share/doc/altree-examples/paup/outgr_absent/association/caco.paup usr/share/doc/altree-examples/paup/outgr_absent/localisation/caco.paup usr/share/doc/altree-examples/paup/outgr_present/association/caco.paup usr/share/doc/altree-examples/paup/outgr_present/localisation/caco.paup
  • usr/share/doc/altree-examples/paup/outgr_absent/localisation/caco.loc usr/share/doc/altree-examples/paup/outgr_present/localisation/caco.loc
  • usr/share/doc/altree-examples/paup/unrooted_present/association/nb_cas_control.txt usr/share/doc/altree-examples/paup/unrooted_present/localisation/nb_cas_control.txt
  • usr/share/doc/altree-examples/phylip/outgroup_absent/association/outfile.gz usr/share/doc/altree-examples/phylip/outgroup_present/association/outfile.gz
  • usr/share/doc/altree-examples/phylip/outgroup_absent/association/outtree.gz usr/share/doc/altree-examples/phylip/outgroup_present/association/outtree.gz
  • usr/share/doc/altree-examples/phylip/outgroup_absent/association/trio.phy usr/share/doc/altree-examples/phylip/outgroup_present/association/trio.phy

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 149)

amap-align

• X binary-file-built-without-LFS-support
  • usr/bin/amap [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/amap [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 148)
  • debian/changelog (line 29)
  • debian/changelog (line 293)
  • debian/changelog (line 38)
  • debian/changelog (line 40)
  • debian/changelog (line 41)
  • debian/changelog (line 42)
  • debian/changelog (line 50)
  • debian/changelog (line 75)
  • debian/changelog (line 84)
  • debian/changelog (line 85)
  • debian/control (line 4)
• P source-contains-empty-directory
  • doc/reference/tmpl/
• I testsuite-autopkgtest-missing
• P wiki-copyright-format-uri
  • http://wiki.debian.org/Proposals/CopyrightFormat

amide (1.0.5-12+b1; main)

• X binary-file-built-without-LFS-support
  • usr/bin/amide
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GFDL
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/amide.desktop
• I spelling-error-in-binary
  • usr/bin/amide caculate calculate
  • usr/bin/amide discontinous discontinuous
  • usr/bin/amide reseting resetting

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 111)
  • debian/changelog (line 186)
  • debian/changelog (line 191)
  • debian/rules (line 37)
• P source-contains-empty-directory
  • bin/
• I testsuite-autopkgtest-missing

ampliconnoise

• X binary-file-built-without-LFS-support
  • usr/bin/FCluster [amd64, i386]
  • usr/bin/FastaUnique [amd64, i386]
  • usr/bin/NDist [amd64, i386]
  • usr/bin/Perseus [amd64, i386]
  • usr/bin/PerseusD [amd64, i386]
  • usr/bin/PyroDist [amd64, i386]
  • usr/bin/PyroNoise [amd64, i386]
  • usr/bin/PyroNoiseA [amd64, i386]
  • usr/bin/PyroNoiseM [amd64, i386]
  • usr/bin/SeqDist [amd64, i386]
  • usr/bin/SeqNoise [amd64, i386]
  • usr/bin/SplitClusterClust [amd64, i386]
  • usr/bin/SplitClusterEven [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/FCluster [amd64, i386]
  • usr/bin/FastaUnique [amd64, i386]
  • usr/bin/NDist [amd64, i386]
  • usr/bin/Perseus [amd64, i386]
  • usr/bin/PerseusD [amd64, i386]
  • usr/bin/PyroDist [amd64, i386]
  • usr/bin/PyroNoise [amd64, i386]
  • usr/bin/PyroNoiseA [amd64, i386]
  • usr/bin/PyroNoiseM [amd64, i386]
  • usr/bin/SeqDist [amd64, i386]
  • usr/bin/SeqNoise [amd64, i386]
  • usr/bin/SplitClusterClust [amd64, i386]
  • usr/bin/SplitClusterEven [amd64, i386]

ampliconnoise-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/1d/02c5065511784c6f83d548dc53f7aa46f9dffa.debug
  • usr/lib/debug/.build-id/94/29e99411a34a807f13179d30280fcd2ca002b3.debug

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 97)
• I testsuite-autopkgtest-missing

andi

• X binary-file-built-without-LFS-support
  • usr/bin/andi
• I spelling-error-in-binary
  • usr/bin/andi exlusive exclusive

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bioinf.eva.mpg.de/anfo/
• P file-contains-trailing-whitespace
  • debian/changelog (line 73)
• I testsuite-autopkgtest-missing

anfo

• I spelling-error-in-manpage
  • usr/share/man/man1/anfo-tool.1.gz choosen chosen [amd64, i386]
  • usr/share/man/man1/anfo-tool.1.gz occuring occurring [amd64, i386]
  • usr/share/man/man1/anfo-tool.1.gz representaion representation [amd64, i386]
  • usr/share/man/man1/anfo.1.gz optinally optionally [amd64, i386]

libanfo0

• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libanfo.so.0.0.0
  • usr/lib/x86_64-linux-gnu/libanfo.so.0.0.0
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libanfo.so.0.0.0
  • usr/lib/x86_64-linux-gnu/libanfo.so.0.0.0

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://mbio-serv2.mbioekol.lu.se/ARAGORN/Downloads/aragorn(.*).tgz
• P file-contains-trailing-whitespace
  • debian/changelog (line 68)
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)

aragorn

• X binary-file-built-without-LFS-support
  • usr/bin/aragorn

• I debian-rules-parses-dpkg-parsechangelog
  • (line 9)
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://download.arb-home.de/release/
• P file-contains-trailing-whitespace
  • debian/changelog (line 123)
  • debian/changelog (line 129)
  • debian/changelog (line 174)
  • debian/changelog (line 282)
  • debian/changelog (line 53)
  • debian/changelog (line 725)
  • debian/changelog (line 88)
  • debian/changelog (line 91)
  • debian/rules (line 117)
  • debian/rules (line 4)
  • debian/rules (line 97)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• X maybe-not-arch-all-binnmuable
  • arb -> arb-common
• I missing-explanation-for-contrib-or-non-free-package
• I testsuite-autopkgtest-missing

arb

• I hardening-no-bindnow
  • usr/lib/arb/bin/CAP2 [amd64, i386]
  • usr/lib/arb/bin/Restriction [amd64, i386]
  • usr/lib/arb/bin/Zuk_to_gen [amd64, i386]
  • usr/lib/arb/bin/arb_2_ascii [amd64, i386]
  • usr/lib/arb/bin/arb_2_bin [amd64, i386]
  • usr/lib/arb/bin/arb_a2ps [amd64, i386]
  • usr/lib/arb/bin/arb_consensus_tree [amd64, i386]
  • usr/lib/arb/bin/arb_convert_aln [amd64, i386]
  • usr/lib/arb/bin/arb_db_server [amd64, i386]
  • usr/lib/arb/bin/arb_dist [amd64, i386]
  • usr/lib/arb/bin/arb_dnarates [amd64, i386]
  • usr/lib/arb/bin/arb_edit4 [amd64, i386]
  • usr/lib/arb/bin/arb_export_rates [amd64, i386]
  • usr/lib/arb/bin/arb_export_tree [amd64, i386]
  • usr/lib/arb/bin/arb_flush_mem [amd64, i386]
  • usr/lib/arb/bin/arb_gene_probe [amd64, i386]
  • usr/lib/arb/bin/arb_help2xml [amd64, i386]
  • usr/lib/arb/bin/arb_message [amd64, i386]
  • usr/lib/arb/bin/arb_naligner [amd64, i386]
  • usr/lib/arb/bin/arb_name_server [amd64, i386]
  • usr/lib/arb/bin/arb_notify [amd64, i386]
  • usr/lib/arb/bin/arb_ntree [amd64, i386]
  • usr/lib/arb/bin/arb_pars [amd64, i386]
  • usr/lib/arb/bin/arb_phylo [amd64, i386]
  • usr/lib/arb/bin/arb_primer [amd64, i386]
  • usr/lib/arb/bin/arb_probe [amd64, i386]
  • usr/lib/arb/bin/arb_proto_2_xsub [amd64, i386]
  • usr/lib/arb/bin/arb_pt_server [amd64, i386]
  • usr/lib/arb/bin/arb_read_tree [amd64, i386]
  • usr/lib/arb/bin/arb_replace [amd64, i386]
  • usr/lib/arb/bin/arb_rnacma [amd64, i386]
  • usr/lib/arb/bin/arb_treegen [amd64, i386]
  • usr/lib/arb/bin/arb_wetc [amd64, i386]
  • usr/lib/arb/bin/axml [amd64, i386]
  • usr/lib/arb/bin/clustalv [amd64, i386]
  • usr/lib/arb/bin/count [amd64, i386]
  • usr/lib/arb/bin/findall [amd64, i386]
  • usr/lib/arb/bin/lsadt [amd64, i386]
  • usr/lib/arb/bin/sho_helix [amd64, i386]
  • usr/lib/arb/bin/varpos [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/arb/bin/CAP2 [amd64, i386]
  • usr/lib/arb/bin/Restriction [amd64, i386]
  • usr/lib/arb/bin/Zuk_to_gen [amd64, i386]
  • usr/lib/arb/bin/arb_a2ps [amd64, i386]
  • usr/lib/arb/bin/arb_treegen [amd64, i386]
  • usr/lib/arb/bin/axml [amd64, i386]
  • usr/lib/arb/bin/clustalv [amd64, i386]
  • usr/lib/arb/bin/count [amd64, i386]
  • usr/lib/arb/bin/findall [amd64, i386]
  • usr/lib/arb/bin/lsadt [amd64, i386]
  • usr/lib/arb/bin/sho_helix [amd64, i386]
  • usr/lib/arb/bin/varpos [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/arb/bin/arb_consensus_tree lengH length [amd64, i386]
  • usr/lib/arb/bin/arb_db_server doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_dist doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_edit4 Wont Won't [amd64, i386]
  • usr/lib/arb/bin/arb_edit4 doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_export_tree lengH length [amd64, i386]
  • usr/lib/arb/bin/arb_naligner aligne align [amd64, i386]
  • usr/lib/arb/bin/arb_naligner doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_naligner enought enough [amd64, i386]
  • usr/lib/arb/bin/arb_name_server doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_ntree Likelyhood Likelihood [amd64, i386]
  • usr/lib/arb/bin/arb_ntree Mor More [amd64, i386]
  • usr/lib/arb/bin/arb_ntree doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_ntree lengH length [amd64, i386]
  • usr/lib/arb/bin/arb_ntree pres press [amd64, i386]
  • usr/lib/arb/bin/arb_pars doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_probe doesnt doesn't [amd64, i386]
  • usr/lib/arb/bin/arb_pt_server doesnt doesn't [amd64, i386]
• I spelling-error-in-copyright
  • explicite explicit [amd64, i386]
  • wont won't [amd64, i386]

arb-common

• W duplicate-changelog-files
  • usr/share/doc/arb-common/arb_CHANGES.txt.gz usr/share/doc/arb-common/changelog.gz usr/share/doc/arb/arb_CHANGES.txt.gz
• X duplicate-files
  • usr/share/doc/arb-common/arb_LICENSE.txt.gz usr/share/doc/arb/arb_LICENSE.txt.gz
  • usr/share/doc/arb-common/arb_README.txt.gz usr/share/doc/arb/arb_README.txt.gz
  • usr/share/doc/arb-common/examples/demo.arb.gz usr/share/doc/arb/examples/demo.arb.gz
• I package-contains-documentation-outside-usr-share-doc
  • usr/lib/arb/PERL_SCRIPTS/BIOPERL/README
  • usr/lib/arb/SH/README
  • usr/share/arb/motifHack/README
• I spelling-error-in-copyright
  • explicite explicit
  • wont won't
• I unused-override
  • package-contains-timestamped-gzip usr/lib/arb/lib/help/*.gz

arb-doc

• I spelling-error-in-copyright
  • explicite explicit
  • wont won't

libarb

• I hardening-no-bindnow
  • usr/lib/arb/lib/ARB.so [amd64, i386]
  • usr/lib/arb/lib/libARBDB.so [amd64, i386]
  • usr/lib/arb/lib/libAWT.so [amd64, i386]
  • usr/lib/arb/lib/libCORE.so [amd64, i386]
  • usr/lib/arb/lib/libWINDOW.so [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/arb/lib/libARBDB.so colums columns [amd64, i386]
• I spelling-error-in-copyright
  • explicite explicit [amd64, i386]
  • wont won't [amd64, i386]

libarb-dev

• I spelling-error-in-binary
  • usr/lib/arb/SL/TREE_WRITE/TREE_WRITE.a lengH length
• I spelling-error-in-copyright
  • explicite explicit [amd64, i386]
  • wont won't [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

arden

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• X duplicate-files
  • usr/share/doc/arden/html/frames.html usr/share/doc/arden/html/index.html

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

art-nextgen-simulation-tools

• I spelling-error-in-binary
  • usr/bin/art_454 unreconized unrecognized [amd64, i386]
  • usr/bin/art_SOLiD lenght length [amd64, i386]
  • usr/bin/art_SOLiD unreconized unrecognized [amd64, i386]

art-nextgen-simulation-tools-profiles

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/art-nextgen-simulation-tools/ART_profiler_454/README
  • usr/share/art-nextgen-simulation-tools/ART_profiler_illumina/README

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 44)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-prebuilt-java-object
  • test/cobertura-lib/asm-6.0.jar
  • test/cobertura-lib/asm-analysis-6.0.jar
  • test/cobertura-lib/asm-commons-6.0.jar
  • test/cobertura-lib/asm-tree-6.0.jar
  • test/cobertura-lib/asm-util-6.0.jar
  • test/cobertura-lib/asm-xml-6.0.jar
  • test/cobertura-lib/cobertura-2.1.1.jar
  • test/cobertura-lib/commons-lang3-3.3.2.jar
  • test/cobertura-lib/hamcrest-core-1.3.jar
  • test/cobertura-lib/jaxen-1.1.4.jar
  • test/cobertura-lib/jetty-6.1.14.jar
  • test/cobertura-lib/jetty-util-6.1.14.jar
  • test/cobertura-lib/junit-4.11.jar
  • test/cobertura-lib/logback-classic-1.0.13.jar
  • test/cobertura-lib/logback-core-1.0.13.jar
  • test/cobertura-lib/oro-2.0.8.jar
  • test/cobertura-lib/servlet-api-2.5-6.1.14.jar
  • test/cobertura-lib/slf4j-api-1.7.5.jar
  • test/evosuite-lib/evosuite-1.0.5.jar
  • test/evosuite-lib/evosuite-standalone-runtime-1.0.5.jar
  • test/evosuite-lib/logback-classic-1.1.3.jar
  • test/evosuite-lib/slf4j-api-1.7.22.jar
  • test/jacoco-lib/jacocoagent.jar
  • test/jacoco-lib/jacocoant.jar

artemis

• I arch-dep-package-has-big-usr-share
  • 11283kB 100%
• X package-contains-no-arch-dependent-files

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

assemblytics

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)
• P package-does-not-install-examples
  • auxprogs/homGeneMapping/examples/
  • examples/

augustus

• X binary-file-built-without-LFS-support
  • usr/bin/aln2wig
  • usr/bin/augustus
  • usr/bin/bam2hints
  • usr/bin/compileSpliceCands
  • usr/bin/etraining
  • usr/bin/fastBlockSearch
  • usr/bin/homGeneMapping
• I hardening-no-fortify-functions
  • usr/bin/fastBlockSearch
  • usr/bin/homGeneMapping
  • usr/bin/joingenes
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/augustus/scripts/README.autoAug
• I spelling-error-in-binary
  • usr/bin/bam2wig Allows to Allows one to
  • usr/bin/compileSpliceCands Dont Don't
  • usr/bin/compileSpliceCands arround around
  • usr/bin/joingenes noone no one
• I spelling-error-in-manpage
  • usr/share/man/man1/bam2hints.1.gz separeted separated
  • usr/share/man/man1/bam2wig.1.gz Allows to Allows one to
  • usr/share/man/man1/homGeneMapping.1.gz direcory directory

augustus-data

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/augustus/config/species/ancylostoma_ceylanicum/README.TXT
  • usr/share/augustus/config/species/camponotus_floridanus/README.TXT
  • usr/share/augustus/config/species/chicken/README.TXT
  • usr/share/augustus/config/species/ciona/README.TXT
  • usr/share/augustus/config/species/human/README.TXT
  • usr/share/augustus/config/species/mnemiopsis_leidyi/README.TXT
  • usr/share/augustus/config/species/nematostella_vectensis/README.TXT
  • usr/share/augustus/config/species/pneumocystis/README.TXT
  • usr/share/augustus/config/species/rice/README.TXT
  • usr/share/augustus/config/species/s_aureus/README.TXT
  • usr/share/augustus/config/species/schistosoma2/README.TXT
  • usr/share/augustus/config/species/strongylocentrotus_purpuratus/README.TXT
  • usr/share/augustus/config/species/wheat/README.txt
  • usr/share/augustus/config/species/zebrafish/README.TXT

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://vina.scripps.edu/download.html
• P unversioned-copyright-format-uri
  • http://dep.debian.net/deps/dep5/

autodock-vina (1.1.2-5+b1; main)

• P debian-changelog-line-too-short
  • DEP5 (line 15) [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/vina [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/vina inconsisent inconsistent [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://autodock.scripps.edu/downloads/autodock-registration/autodock-4-2-download-page/
• P file-contains-trailing-whitespace
  • debian/changelog (line 178)
  • debian/changelog (line 211)
  • debian/changelog (line 260)
  • debian/control (line 83)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • autodock/Tests/AutoDockTools/

autodock

• X binary-file-built-without-LFS-support
  • usr/bin/autodock4
• I spelling-error-in-binary
  • usr/bin/autodock4 conect connect [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/autodock4.1.gz perfoms performs [amd64, i386]

autogrid

• X binary-file-built-without-LFS-support
  • usr/bin/autogrid4

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://mgltools.scripps.edu/downloads/.*mgltools_source_([0-9.]+)\.tar\.gz
• P no-dep5-copyright
• I testsuite-autopkgtest-missing

autodocktools

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

axe-demultiplexer

• X binary-file-built-without-LFS-support
  • usr/bin/axe-demux
• I spelling-error-in-binary
  • usr/bin/axe-demux confict conflict
• I spelling-error-in-manpage
  • usr/share/man/man1/axe-demux.1.gz confict conflict

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 39)
  • debian/rules (line 22)
• I quilt-patch-missing-description
  • fix_example.patch
• I testsuite-autopkgtest-missing

baitfisher

• X binary-file-built-without-LFS-support
  • usr/bin/BaitFisher [amd64, i386]
• W manpage-has-useless-whatis-entry
  • usr/share/man/man1/BaitFilter.1.gz [amd64, i386]
  • usr/share/man/man1/BaitFisher.1.gz [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/BaitFilter FEATUE FEATURE [amd64, i386]
  • usr/bin/BaitFilter allows to allows one to [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/BaitFilter.1.gz allows to allows one to [amd64, i386]

• X debian-watch-does-not-check-gpg-signature

bali-phy

• X duplicate-files
  • usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta
• I possible-documentation-but-no-doc-base-registration
• I spelling-error-in-binary
  • usr/bin/bali-phy buil build
  • usr/bin/bali-phy ment meant
  • usr/lib/bali-phy/SMC.so AfE Safe

bali-phy-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/01/947f524ef4c531ec524e0e0115a98e8e0d23b4.debug
  • usr/lib/debug/.build-id/0e/3199e14c60e5a1d01503f3a9e52ef37da1c1fb.debug
  • usr/lib/debug/.build-id/0f/6490d4172510c70afb79089787b4d3fa9d7bd9.debug
  • usr/lib/debug/.build-id/13/a5331d012e764eca44330897b5380ed80a8378.debug
  • usr/lib/debug/.build-id/19/e37dd455de76c88b4a4867673b0ac51c8aa8f9.debug
  • usr/lib/debug/.build-id/21/1b1f8e1733174986c5ec71605f8dd6870e0c7f.debug
  • usr/lib/debug/.build-id/24/fa96fa89008fa00a4ad3bfd221436116dea612.debug
  • usr/lib/debug/.build-id/26/2ee3fd81ec1b80b77da7b2345a8174e73e65ee.debug
  • usr/lib/debug/.build-id/28/53359bd6e19b7a48a145d939ea813c67f545f5.debug
  • usr/lib/debug/.build-id/30/e91c3082c42402cbd02ce83618e88a3fd99377.debug
  • usr/lib/debug/.build-id/3b/f75450e09c0f266058b73b8eabe54b50e80152.debug
  • usr/lib/debug/.build-id/46/c40ef34c09f2bc2b5abc915ba54399f8fc170c.debug
  • usr/lib/debug/.build-id/4d/3571c8ac37af0005d298e2e0fa358ce2b3e407.debug
  • usr/lib/debug/.build-id/5b/9d5eadbfc0ba123d9e1d2376f8adf99469cfb9.debug
  • usr/lib/debug/.build-id/64/315b4ad0fc5ed29840bdfbef9767a20c11e7cc.debug
  • usr/lib/debug/.build-id/6b/b62bfd773fec32d80d7721bb83b37bd98e8160.debug
  • usr/lib/debug/.build-id/75/a1070d05daf84f75f3d65917f233d07d54075f.debug
  • usr/lib/debug/.build-id/7c/1efd7a6c738d1f0a2f8d3704f394c2d846c51b.debug
  • usr/lib/debug/.build-id/7c/9a84caf025ea06a4cd534ddec4bab067244d46.debug
  • usr/lib/debug/.build-id/7e/004cf5006e20d8a3c519b7f51460488b93f628.debug
  • usr/lib/debug/.build-id/7f/a3f58215ad07fdf1a8510d2de820d7a94ec7a9.debug
  • usr/lib/debug/.build-id/83/04bcaa9da27c28a6bc17cc94f7dc7e8b075a9f.debug
  • usr/lib/debug/.build-id/84/138053ed8bf5611c353f9024124ad3a327f89a.debug
  • usr/lib/debug/.build-id/84/927f5a8cc058cc7997148e12e2a7ca767f33a4.debug
  • usr/lib/debug/.build-id/85/74618514cc0ae3babdf260a48d4049fc87161a.debug
  • usr/lib/debug/.build-id/88/cbe83a3f696e2c0dca3ee84b5ef3b2d8a04d9a.debug
  • usr/lib/debug/.build-id/8f/7885dd1c4b232d325392e7b2e6fffdbea787f7.debug
  • usr/lib/debug/.build-id/98/b33ff7907f9c2c9eafb9289ecd1f2f1a1920b9.debug
  • usr/lib/debug/.build-id/9d/cb95c18711d283ea8a9d7475786e2080451407.debug
  • usr/lib/debug/.build-id/a1/aaa6657c24206b1073c27f262849b3a7c8eab4.debug
  • usr/lib/debug/.build-id/a3/2ca6c42f8e95e3f3a65a0701759ec2347a2c70.debug
  • usr/lib/debug/.build-id/aa/f692a136ddeb3272e894f2d4b049882aece77e.debug
  • usr/lib/debug/.build-id/b2/9c6eab17524382981c9aeef31aba0ca9f2c10f.debug
  • usr/lib/debug/.build-id/b4/c56569c0372cceebf5744c43aa265c5d5974e3.debug
  • usr/lib/debug/.build-id/b9/8574e79a5fb719aa94d483bc517714136d9e3c.debug
  • usr/lib/debug/.build-id/bd/137f2bdd562406a1f5b3a0d57491922bbf5228.debug
  • usr/lib/debug/.build-id/c3/c6f899e48a714321ec8afcbce0d38bfa1c7560.debug
  • usr/lib/debug/.build-id/cf/38989d31cc6fb7c8261e0d055f22c25bf6768a.debug
  • usr/lib/debug/.build-id/d2/3e3904eeecbb9d1446eb844c189690bc8d017d.debug
  • usr/lib/debug/.build-id/df/db8cb9ad834030e4b280bf4ea69951e1b19d10.debug
  • usr/lib/debug/.build-id/e0/5c31d091a214dc12f3fd9cfb7224ac86a27f49.debug
  • usr/lib/debug/.build-id/e6/8d0f9edf88d291f057f2d77862c8a175e180bd.debug
  • usr/lib/debug/.build-id/eb/aa66624f4ba1219ffb2ae4e655e15d01811327.debug
  • usr/lib/debug/.build-id/f7/ad46cf829fa4a98abe7c68ca91930b648a40c0.debug

• W changelog-should-mention-nmu
• W debian-rules-should-not-set-CFLAGS-from-noopt
• X debian-watch-does-not-check-gpg-signature
• P duplicate-in-relation-field
  • in source build-depends: dh-python, dh-python
• P file-contains-trailing-whitespace
  • debian/changelog (line 131)
  • debian/changelog (line 247)
  • debian/changelog (line 269)
  • debian/control (line 100)
  • debian/control (line 101)
  • debian/control (line 104)
  • debian/control (line 105)
  • debian/control (line 117)
  • debian/control (line 118)
  • debian/control (line 119)
  • debian/control (line 120)
  • debian/control (line 121)
  • debian/control (line 124)
  • debian/control (line 125)
  • debian/control (line 139)
  • debian/control (line 140)
  • debian/control (line 141)
  • debian/control (line 142)
  • debian/control (line 154)
  • debian/control (line 155)
  • debian/control (line 156)
  • debian/control (line 157)
  • debian/control (line 171)
  • debian/control (line 172)
  • debian/control (line 173)
  • debian/control (line 174)
  • debian/control (line 186)
  • debian/control (line 187)
  • debian/control (line 188)
  • debian/control (line 211)
  • debian/control (line 212)
  • debian/control (line 213)
  • debian/control (line 53)
  • debian/control (line 54)
  • debian/control (line 55)
  • debian/control (line 56)
  • debian/control (line 57)
  • debian/control (line 60)
  • debian/control (line 61)
  • debian/control (line 74)
  • debian/control (line 75)
  • debian/control (line 76)
  • debian/control (line 77)
  • debian/control (line 78)
  • debian/control (line 81)
  • debian/control (line 82)
  • debian/control (line 97)
  • debian/control (line 98)
  • debian/control (line 99)
  • debian/rules (line 1)
  • debian/rules (line 145)
  • debian/rules (line 158)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 9
• W python-foo-but-no-python3-foo
  • python-ball
  • python-ballview
• W source-nmu-has-incorrect-version-number
  • 1.4.3~beta1-3
• W spelling-error-in-patch-description
  • debian/patches/fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch comparision comparison
  • debian/patches/link_against_x11.patch explicitely explicitly
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ball.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ball.git

• W debian-rules-should-not-set-CFLAGS-from-noopt
• X debian-watch-does-not-check-gpg-signature
• P duplicate-in-relation-field
  • in source build-depends: dh-python, dh-python
• P file-contains-trailing-whitespace
  • debian/changelog (line 146)
  • debian/changelog (line 262)
  • debian/changelog (line 284)
  • debian/control (line 100)
  • debian/control (line 101)
  • debian/control (line 104)
  • debian/control (line 105)
  • debian/control (line 117)
  • debian/control (line 118)
  • debian/control (line 119)
  • debian/control (line 120)
  • debian/control (line 121)
  • debian/control (line 124)
  • debian/control (line 125)
  • debian/control (line 139)
  • debian/control (line 140)
  • debian/control (line 141)
  • debian/control (line 142)
  • debian/control (line 154)
  • debian/control (line 155)
  • debian/control (line 156)
  • debian/control (line 157)
  • debian/control (line 171)
  • debian/control (line 172)
  • debian/control (line 173)
  • debian/control (line 174)
  • debian/control (line 186)
  • debian/control (line 187)
  • debian/control (line 188)
  • debian/control (line 211)
  • debian/control (line 212)
  • debian/control (line 213)
  • debian/control (line 53)
  • debian/control (line 54)
  • debian/control (line 55)
  • debian/control (line 56)
  • debian/control (line 57)
  • debian/control (line 60)
  • debian/control (line 61)
  • debian/control (line 74)
  • debian/control (line 75)
  • debian/control (line 76)
  • debian/control (line 77)
  • debian/control (line 78)
  • debian/control (line 81)
  • debian/control (line 82)
  • debian/control (line 97)
  • debian/control (line 98)
  • debian/control (line 99)
  • debian/rules (line 1)
  • debian/rules (line 145)
  • debian/rules (line 158)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 10
• W python-foo-but-no-python3-foo
  • python-ball
  • python-ballview
• W spelling-error-in-patch-description
  • debian/patches/fix-PoseClustering_Test-replace-file-compare-with-deserialize.patch comparision comparison
  • debian/patches/link_against_x11.patch explicitely explicitly
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/ball.git
  • vcs-git https://anonscm.debian.org/git/debian-med/ball.git

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 1)
  • debian/rules (line 133)
• P package-does-not-install-examples
  • doc/examples/
• W python-foo-but-no-python3-foo
  • python-ball
• I testsuite-autopkgtest-missing

ballview

• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/ballview.desktop [amd64, i386]
• W desktop-mime-but-no-exec-code
  • usr/share/applications/ballview.desktop [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/ballview/BALLView [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/ballview/BALLView dont don't [amd64, i386]
  • usr/lib/ballview/BALLView informations information [amd64, i386]

libball1.5

• X binary-file-built-without-LFS-support
  • usr/lib/libBALL.so.1.5
• W dev-pkg-without-shlib-symlink
  • usr/lib/libBALL.so.1.5 usr/lib/libBALL.so [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/libBALL.so.1.5 [amd64, i386]
• I no-symbols-control-file
  • usr/lib/libBALL.so.1.5 [amd64, i386]
• X shlib-calls-exit
  • usr/lib/libBALL.so.1.5 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/libBALL.so.1.5 CONECT CONNECT [amd64, i386]
  • usr/lib/libBALL.so.1.5 Differnt Different [amd64, i386]
  • usr/lib/libBALL.so.1.5 childs children [amd64, i386]
  • usr/lib/libBALL.so.1.5 enought enough [amd64, i386]
  • usr/lib/libBALL.so.1.5 errorneous erroneous [amd64, i386]
  • usr/lib/libBALL.so.1.5 featues features [amd64, i386]
  • usr/lib/libBALL.so.1.5 implmented implemented [amd64, i386]
  • usr/lib/libBALL.so.1.5 paramters parameters [amd64, i386]
  • usr/lib/libBALL.so.1.5 registerd registered [amd64, i386]
  • usr/lib/libBALL.so.1.5 seperator separator [amd64, i386]
  • usr/lib/libBALL.so.1.5 standart standard [amd64, i386]
  • usr/lib/libBALL.so.1.5 unkown unknown [amd64, i386]
  • usr/lib/libBALL.so.1.5 woNT won't [amd64, i386]

libball1.5-dev

• W breaks-without-version
  • libball1.3-dev [amd64, i386]

libball1.5-doc

• X duplicate-files
  • usr/share/doc/libball1.5/html/BALL/d0/d11/a12635.html usr/share/doc/libball1.5/html/BALL/db/d7f/a12638.html
  • usr/share/doc/libball1.5/html/BALL/d0/d15/a12596.html usr/share/doc/libball1.5/html/BALL/da/d87/a12599.html
  • usr/share/doc/libball1.5/html/BALL/d2/d0c/a12611.html usr/share/doc/libball1.5/html/BALL/d4/dbf/a12614.html
  • usr/share/doc/libball1.5/html/BALL/search/all_0.js usr/share/doc/libball1.5/html/BALL/search/groups_0.js
  • usr/share/doc/libball1.5/html/BALL/search/all_1.js usr/share/doc/libball1.5/html/BALL/search/defines_0.js
  • usr/share/doc/libball1.5/html/BALL/search/all_1c.js usr/share/doc/libball1.5/html/BALL/search/functions_1a.js

libballview1.5

• W dev-pkg-without-shlib-symlink
  • usr/lib/libVIEW.so.1.5 usr/lib/libVIEW.so [amd64, i386]
• I hardening-no-fortify-functions
  • usr/lib/libVIEW.so.1.5 [amd64, i386]
• I no-symbols-control-file
  • usr/lib/libVIEW.so.1.5 [amd64, i386]
• O package-name-doesnt-match-sonames
  • libVIEW1.5 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/libVIEW.so.1.5 Dont Don't [amd64, i386]
  • usr/lib/libVIEW.so.1.5 Informations Information [amd64, i386]
  • usr/lib/libVIEW.so.1.5 Uknown Unknown [amd64, i386]
  • usr/lib/libVIEW.so.1.5 an other another [amd64, i386]
  • usr/lib/libVIEW.so.1.5 beeing being [amd64, i386]
  • usr/lib/libVIEW.so.1.5 calulate calculate [amd64, i386]
  • usr/lib/libVIEW.so.1.5 choosen chosen [amd64, i386]
  • usr/lib/libVIEW.so.1.5 correspoding corresponding [amd64, i386]
  • usr/lib/libVIEW.so.1.5 doesnt doesn't [amd64, i386]
  • usr/lib/libVIEW.so.1.5 executeable executable [amd64, i386]
  • usr/lib/libVIEW.so.1.5 mininum minimum [amd64, i386]
  • usr/lib/libVIEW.so.1.5 orgin origin [amd64, i386]
  • usr/lib/libVIEW.so.1.5 reseting resetting [amd64, i386]
  • usr/lib/libVIEW.so.1.5 succesfully successfully [amd64, i386]
  • usr/lib/libVIEW.so.1.5 unkown unknown [amd64, i386]

libballview1.5-dev

• W breaks-without-version
  • libballview1.3-dev [amd64, i386]
• O package-contains-empty-directory
  • usr/lib/ [amd64, i386]

python-ball

• X package-contains-no-arch-dependent-files

• X debian-watch-does-not-check-gpg-signature
• X deprecated-configure-filename
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libbambamc0

• X binary-file-built-without-LFS-support
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
• I hardening-no-bindnow
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
  • usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libbambamc.so.0.0.50
  • usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50

• I debian-rules-contains-unnecessary-get-orig-source-target
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 39)
  • debian/changelog (line 41)

libbamtools-doc

• X duplicate-files
  • usr/share/doc/libbamtools-dev/html/search/all_10.js usr/share/doc/libbamtools-dev/html/search/variables_d.js
  • usr/share/doc/libbamtools-dev/html/search/all_15.js usr/share/doc/libbamtools-dev/html/search/variables_12.js
  • usr/share/doc/libbamtools-dev/html/search/all_17.js usr/share/doc/libbamtools-dev/html/search/variables_13.js
  • usr/share/doc/libbamtools-dev/html/search/all_18.js usr/share/doc/libbamtools-dev/html/search/functions_12.js
  • usr/share/doc/libbamtools-dev/html/search/all_4.js usr/share/doc/libbamtools-dev/html/search/functions_3.js
  • usr/share/doc/libbamtools-dev/html/search/all_7.js usr/share/doc/libbamtools-dev/html/search/functions_6.js
  • usr/share/doc/libbamtools-dev/html/search/all_9.js usr/share/doc/libbamtools-dev/html/search/functions_8.js
  • usr/share/doc/libbamtools-dev/html/search/all_a.js usr/share/doc/libbamtools-dev/html/search/variables_7.js

libbamtools2.5.1

• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libbamtools.so.2.5.1
  • usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1
• X shlib-calls-exit
  • usr/lib/i386-linux-gnu/libbamtools.so.2.5.1
  • usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/control (line 22)
• I testsuite-autopkgtest-missing

bandage

• X binary-file-built-without-LFS-support
  • usr/bin/Bandage
• I hardening-no-bindnow
  • usr/bin/Bandage
• I spelling-error-in-binary
  • usr/bin/Bandage multipled multiplied
  • usr/bin/Bandage occurence occurrence
  • usr/bin/Bandage occurences occurrences

• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 5)
• O debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 3.9.8 (released 2016-04-06) (current is 4.3.0)
• P package-does-not-install-examples
  • examples/

barrnap

• W incorrect-path-for-interpreter
  • usr/bin/barrnap (#!/usr/bin/env perl != /usr/bin/perl)

• X debian-watch-does-not-check-gpg-signature
• I override_dh_auto_test-does-not-check-DEB_BUILD_OPTIONS
  • (line 15)
• X upstream-metadata-file-is-missing

bart

• X binary-file-built-without-LFS-support
  • usr/bin/bart

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

bart-view

• X binary-file-built-without-LFS-support
  • usr/lib/bart/commands/view
• I hardening-no-bindnow
  • usr/lib/bart/commands/view

• X debian-watch-does-not-check-gpg-signature
• P package-does-not-install-examples
  • config/examples/
• P package-uses-old-debhelper-compat-version
  • 10
• I quilt-patch-missing-description
  • add_installed_dir_paths.patch

bcbio

• W binary-without-manpage
  • usr/bin/bcbio_fastq_umi_prep.py
  • usr/bin/bcbio_nextgen.py
  • usr/bin/bcbio_prepare_samples.py
  • usr/bin/bcbio_setup_genome.py
  • usr/bin/cwltool2wdl.py
• W script-not-executable
  • usr/share/bcbio/config/examples/HCC2218-sv-getdata.sh
  • usr/share/bcbio/config/examples/NA12878-exome-methodcmp-getdata.sh
  • usr/share/bcbio/config/examples/NA12878-hg38-validate-getdata.sh
  • usr/share/bcbio/config/examples/NA12878-sv-getdata.sh
  • usr/share/bcbio/config/examples/NA12878-trio-wgs-validate-getdata.sh
  • usr/share/bcbio/config/examples/NA24385-10x-getdata.sh
  • usr/share/bcbio/config/examples/archived/NA12878-trio-sv-getdata.sh
  • usr/share/bcbio/config/examples/cancer-dream-syn3-getdata.sh
  • usr/share/bcbio/config/examples/cancer-giab-na12878-na24385-getdata.sh
  • usr/share/bcbio/config/examples/giab-validate-setup.sh
  • usr/share/bcbio/config/examples/rnaseq-seqc-getdata.sh
  • usr/share/bcbio/config/teaching/cancer-syn3-chr6-prep.sh
• O script-with-language-extension
  • usr/bin/bcbio_fastq_umi_prep.py
  • usr/bin/bcbio_nextgen.py
  • usr/bin/bcbio_prepare_samples.py
  • usr/bin/bcbio_setup_genome.py
  • usr/bin/cwltool2wdl.py
• I spelling-error-in-manpage
  • usr/share/man/man1/bcbio_nextgen.1.gz ceate create

bcbio-doc

• O privacy-breach-generic
  • usr/share/doc/bcbio-doc/html/contents/cwl.html [<img alt="variant calling overview" src="http://i.imgur.com/iyu8viz.png" style="width: 600px; height: 700px;" />] (http://i.imgur.com/iyu8viz.png)

• X debian-watch-does-not-check-gpg-signature
• I unused-override
  • testsuite-dependency-has-unparsable-elements

bcftools

• W binary-without-manpage
  • usr/bin/guess-ploidy.py
  • usr/bin/plot-roh.py
  • usr/bin/run-roh.pl
• X dependency-on-python-version-marked-for-end-of-life
  • (Suggests: python)
• I hardening-no-bindnow
  • usr/bin/bcftools
  • usr/lib/x86_64-linux-gnu/bcftools/GTisec.so
  • usr/lib/x86_64-linux-gnu/bcftools/GTsubset.so
  • usr/lib/x86_64-linux-gnu/bcftools/ad-bias.so
  • usr/lib/x86_64-linux-gnu/bcftools/af-dist.so
  • usr/lib/x86_64-linux-gnu/bcftools/check-ploidy.so
  • usr/lib/x86_64-linux-gnu/bcftools/check-sparsity.so
  • usr/lib/x86_64-linux-gnu/bcftools/color-chrs.so
  • usr/lib/x86_64-linux-gnu/bcftools/contrast.so
  • usr/lib/x86_64-linux-gnu/bcftools/counts.so
  • usr/lib/x86_64-linux-gnu/bcftools/dosage.so
  • usr/lib/x86_64-linux-gnu/bcftools/fill-AN-AC.so
  • usr/lib/x86_64-linux-gnu/bcftools/fill-from-fasta.so
  • usr/lib/x86_64-linux-gnu/bcftools/fill-tags.so
  • usr/lib/x86_64-linux-gnu/bcftools/fixploidy.so
  • usr/lib/x86_64-linux-gnu/bcftools/fixref.so
  • usr/lib/x86_64-linux-gnu/bcftools/frameshifts.so
  • usr/lib/x86_64-linux-gnu/bcftools/guess-ploidy.so
  • usr/lib/x86_64-linux-gnu/bcftools/impute-info.so
  • usr/lib/x86_64-linux-gnu/bcftools/isecGT.so
  • usr/lib/x86_64-linux-gnu/bcftools/mendelian.so
  • usr/lib/x86_64-linux-gnu/bcftools/missing2ref.so
  • usr/lib/x86_64-linux-gnu/bcftools/prune.so
  • usr/lib/x86_64-linux-gnu/bcftools/setGT.so
  • usr/lib/x86_64-linux-gnu/bcftools/smpl-stats.so
  • usr/lib/x86_64-linux-gnu/bcftools/split.so
  • usr/lib/x86_64-linux-gnu/bcftools/tag2tag.so
  • usr/lib/x86_64-linux-gnu/bcftools/trio-stats.so
  • usr/lib/x86_64-linux-gnu/bcftools/trio-switch-rate.so
• W script-with-language-extension
  • usr/bin/color-chrs.pl
  • usr/bin/guess-ploidy.py
  • usr/bin/plot-roh.py
  • usr/bin/run-roh.pl
  • usr/bin/vcfutils.pl
• I spelling-error-in-binary
  • usr/bin/bcftools expresion expression
  • usr/lib/x86_64-linux-gnu/bcftools/fill-from-fasta.so expresion expression
  • usr/lib/x86_64-linux-gnu/bcftools/setGT.so expresion expression
• I spelling-error-in-manpage
  • usr/share/man/man1/bcftools.1.gz allows to allows one to
  • usr/share/man/man1/bcftools.1.gz contruction construction
  • usr/share/man/man1/bcftools.1.gz wich which

• X debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • src/cimg/
• I testsuite-autopkgtest-missing

beads

• X binary-file-built-without-LFS-support
  • usr/bin/beads [amd64, i386]
  • usr/bin/qtbeads [amd64, i386]
• W binary-without-manpage
  • usr/bin/qtbeads [amd64, i386]
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/beads.desktop [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/beads assignement assignment [amd64, i386]
  • usr/bin/qtbeads assignement assignment [amd64, i386]
  • usr/bin/qtbeads developped developed [amd64, i386]
  • usr/bin/qtbeads occured occurred [amd64, i386]
• I spelling-error-in-copyright
  • therefor therefore [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 5.0-180928+dfsg

beagle-doc

• X duplicate-files
  • usr/share/doc/beagle/api/jquery/external/jquery/jquery.js usr/share/doc/beagle/api/jquery/jquery-1.10.2.js
• O embedded-javascript-library
  • usr/share/doc/beagle/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/beagle/api/jquery/jquery-1.10.2.js please use libjs-jquery
  • usr/share/doc/beagle/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/beagle/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/beagle/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/beagle/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• X debian-watch-does-not-check-gpg-signature
• I file-contains-fixme-placeholder
  • debian/rules:51 FIXME
• P source-contains-empty-directory
  • lib/
  • release_phylogeography/common/lib/
• I testsuite-autopkgtest-missing

beast-mcmc

• W binary-without-manpage
  • usr/bin/beast-tracer
  • usr/bin/loganalyser
  • usr/bin/logcombiner
  • usr/bin/treeannotator
  • usr/bin/treestat

beast-mcmc-examples

• X duplicate-files
  • usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/freqs_zs.csv usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/freqs.csv
  • usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/inirates.csv.gz usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/rates_zs.csv.gz

libnucleotidelikelihoodcore0

• I hardening-no-bindnow
  • usr/lib/libNucleotideLikelihoodCore.so.0 [amd64, i386]
• I no-symbols-control-file
  • usr/lib/libNucleotideLikelihoodCore.so.0 [amd64, i386]

libnucleotidelikelihoodcore0-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/11/336cba535f09f330aa77ab501ab24505e96674.debug
  • usr/lib/debug/.build-id/ab/aa72b0f526f2d22d2ebef6b661b7be5e6c1454.debug

• X debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • lib/bundler/
• I testsuite-autopkgtest-missing

beast2-mcmc-doc

• I possible-documentation-but-no-doc-base-registration

beast2-mcmc-examples

• X duplicate-files
  • usr/share/doc/beast-mcmc/examples/nexus/26.nex.gz usr/share/doc/beast-mcmc/examples/nexus/gopher.nex.gz

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 27)
  • debian/changelog (line 32)
  • debian/changelog (line 49)
  • debian/changelog (line 56)
  • debian/rules (line 47)
  • debian/rules (line 48)
  • debian/rules (line 49)
• I testsuite-autopkgtest-missing

bedops

• X binary-file-built-without-LFS-support
  • usr/bin/bedextract
  • usr/bin/bedmap
  • usr/bin/bedops
  • usr/bin/closest-features
  • usr/bin/sort-bed
• W binary-without-manpage
  • usr/bin/bam2bed_gnuParallel [amd64, i386]
  • usr/bin/bam2bed_sge [amd64, i386]
  • usr/bin/bam2bed_slurm [amd64, i386]
  • usr/bin/bam2starch_gnuParallel [amd64, i386]
  • usr/bin/bam2starch_sge [amd64, i386]
  • usr/bin/bam2starch_slurm [amd64, i386]
  • usr/bin/starchcluster_gnuParallel [amd64, i386]
  • usr/bin/starchcluster_sge [amd64, i386]
  • usr/bin/starchcluster_slurm [amd64, i386]
• W csh-considered-harmful
  • usr/bin/bam2bed_gnuParallel [amd64, i386]
  • usr/bin/bam2bed_sge [amd64, i386]
  • usr/bin/bam2bed_slurm [amd64, i386]
  • usr/bin/bam2starch_gnuParallel [amd64, i386]
  • usr/bin/bam2starch_sge [amd64, i386]
  • usr/bin/bam2starch_slurm [amd64, i386]
  • usr/bin/starchcluster_gnuParallel [amd64, i386]
  • usr/bin/starchcluster_sge [amd64, i386]
  • usr/bin/starchcluster_slurm [amd64, i386]
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python) [amd64, i386]
• I hardening-no-bindnow
  • usr/bin/convert2bed [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/bedextract [amd64, i386]
  • usr/bin/bedmap [amd64, i386]
  • usr/bin/bedops [amd64, i386]
  • usr/bin/bedops-starch [amd64, i386]
  • usr/bin/closest-features [amd64, i386]
  • usr/bin/convert2bed [amd64, i386]
  • usr/bin/sort-bed [amd64, i386]
  • usr/bin/starchcat [amd64, i386]
  • usr/bin/starchstrip [amd64, i386]
  • usr/bin/unstarch [amd64, i386]
• W manpage-has-errors-from-man
  • usr/share/man/man1/bedops-starch.1.gz 30: warning [p 1, 5.3i]: can't break line [amd64, i386]
  • usr/share/man/man1/starchcat.1.gz 38: warning [p 1, 7.3i]: can't break line [amd64, i386]
  • usr/share/man/man1/starchstrip.1.gz 52: warning [p 1, 10.5i]: can't break line [amd64, i386]
  • usr/share/man/man1/unstarch.1.gz 27: warning [p 1, 4.3i]: cannot adjust line [amd64, i386]
• W manpage-has-useless-whatis-entry
  • usr/share/man/man1/bam2bed.1.gz [amd64, i386]
  • usr/share/man/man1/bam2starch.1.gz [amd64, i386]
  • usr/share/man/man1/bedextract.1.gz [amd64, i386]
  • usr/share/man/man1/bedmap.1.gz [amd64, i386]
  • usr/share/man/man1/bedops-starch.1.gz [amd64, i386]
  • usr/share/man/man1/bedops.1.gz [amd64, i386]
  • usr/share/man/man1/closest-features.1.gz [amd64, i386]
  • usr/share/man/man1/convert2bed.1.gz [amd64, i386]
  • usr/share/man/man1/gff2bed.1.gz [amd64, i386]
  • usr/share/man/man1/gff2starch.1.gz [amd64, i386]
  • usr/share/man/man1/gtf2bed.1.gz [amd64, i386]
  • usr/share/man/man1/gtf2starch.1.gz [amd64, i386]
  • usr/share/man/man1/gvf2bed.1.gz [amd64, i386]
  • usr/share/man/man1/gvf2starch.1.gz [amd64, i386]
  • usr/share/man/man1/psl2bed.1.gz [amd64, i386]
  • usr/share/man/man1/psl2starch.1.gz [amd64, i386]
  • usr/share/man/man1/rmsk2bed.1.gz [amd64, i386]
  • usr/share/man/man1/rmsk2starch.1.gz [amd64, i386]
  • usr/share/man/man1/sam2bed.1.gz [amd64, i386]
  • usr/share/man/man1/sam2starch.1.gz [amd64, i386]
  • usr/share/man/man1/sort-bed.1.gz [amd64, i386]
  • usr/share/man/man1/starch-diff.1.gz [amd64, i386]
  • usr/share/man/man1/starchcat.1.gz [amd64, i386]
  • usr/share/man/man1/starchstrip.1.gz [amd64, i386]
  • usr/share/man/man1/unstarch.1.gz [amd64, i386]
  • usr/share/man/man1/update-sort-bed-migrate-candidates.1.gz [amd64, i386]
  • usr/share/man/man1/update-sort-bed-slurm.1.gz [amd64, i386]
  • usr/share/man/man1/update-sort-bed-starch-slurm.1.gz [amd64, i386]
  • usr/share/man/man1/vcf2bed.1.gz [amd64, i386]
  • usr/share/man/man1/vcf2starch.1.gz [amd64, i386]
  • usr/share/man/man1/wig2bed.1.gz [amd64, i386]
  • usr/share/man/man1/wig2starch.1.gz [amd64, i386]

bedops-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/37/04cd41caac58f0a9e98e4fe25e131c9da357f0.debug
  • usr/lib/debug/.build-id/df/68589f8dcf01355d227a9dc6affe683ba7ab92.debug

bedops-doc

• X duplicate-files
  • usr/share/doc/bedops/html/_images/reference_bedextract_mechanism.png usr/share/doc/bedops/html/_images/reference_bedextract_mechanism1.png

• X debian-watch-does-not-check-gpg-signature

bedtools

• W binary-without-manpage
  • usr/bin/annotateBed [amd64, i386]
  • usr/bin/bamToBed [amd64, i386]
  • usr/bin/bamToFastq [amd64, i386]
  • usr/bin/bed12ToBed6 [amd64, i386]
  • usr/bin/bedToBam [amd64, i386]
  • usr/bin/bedToIgv [amd64, i386]
  • usr/bin/bedpeToBam [amd64, i386]
  • usr/bin/bedtools [amd64, i386]
  • usr/bin/closestBed [amd64, i386]
  • usr/bin/clusterBed [amd64, i386]
  • usr/bin/complementBed [amd64, i386]
  • usr/bin/coverageBed [amd64, i386]
  • usr/bin/expandCols [amd64, i386]
  • usr/bin/fastaFromBed [amd64, i386]
  • usr/bin/flankBed [amd64, i386]
  • usr/bin/genomeCoverageBed [amd64, i386]
  • usr/bin/getOverlap [amd64, i386]
  • usr/bin/groupBy [amd64, i386]
  • usr/bin/intersectBed [amd64, i386]
  • usr/bin/linksBed [amd64, i386]
  • usr/bin/mapBed [amd64, i386]
  • usr/bin/maskFastaFromBed [amd64, i386]
  • usr/bin/mergeBed [amd64, i386]
  • usr/bin/multiBamCov [amd64, i386]
  • usr/bin/multiIntersectBed [amd64, i386]
  • usr/bin/nucBed [amd64, i386]
  • usr/bin/pairToBed [amd64, i386]
  • usr/bin/pairToPair [amd64, i386]
  • usr/bin/randomBed [amd64, i386]
  • usr/bin/shiftBed [amd64, i386]
  • usr/bin/shuffleBed [amd64, i386]
  • usr/bin/slopBed [amd64, i386]
  • usr/bin/sortBed [amd64, i386]
  • usr/bin/subtractBed [amd64, i386]
  • usr/bin/tagBam [amd64, i386]
  • usr/bin/unionBedGraphs [amd64, i386]
  • usr/bin/windowBed [amd64, i386]
  • usr/bin/windowMaker [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/bedtools coul could [amd64, i386]
  • usr/bin/bedtools ment meant [amd64, i386]
  • usr/bin/bedtools postive positive [amd64, i386]

bedtools-test

• W executable-not-elf-or-script
  • usr/share/bedtools/data/knownGene.hg18.chr21.bed
  • usr/share/bedtools/test/sort/b.bed
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/bedtools/test/fisher/README.md
• W script-not-executable
  • usr/share/bedtools/test/bamtobed/test-bamtobed.sh
  • usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
  • usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
  • usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/closest/test-closest.sh
  • usr/share/bedtools/test/cluster/test-cluster.sh
  • usr/share/bedtools/test/complement/test-complement.sh
  • usr/share/bedtools/test/expand/test-expand.sh
  • usr/share/bedtools/test/fisher/cmp.sh
  • usr/share/bedtools/test/fisher/get.sh
  • usr/share/bedtools/test/fisher/shuf.sh
  • usr/share/bedtools/test/fisher/test-fisher.sh
  • usr/share/bedtools/test/flank/test-flank.sh
  • usr/share/bedtools/test/general/test-general.sh
  • usr/share/bedtools/test/getfasta/test-getfasta.sh
  • usr/share/bedtools/test/groupby/test-groupby.sh
  • usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
  • usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
  • usr/share/bedtools/test/intersect/test-intersect.sh
  • usr/share/bedtools/test/jaccard/test-jaccard.sh
  • usr/share/bedtools/test/makewindows/test-makewindows.sh
  • usr/share/bedtools/test/map/test-map.sh
  • usr/share/bedtools/test/merge/test-merge.sh
  • usr/share/bedtools/test/multicov/test-multicov.sh
  • usr/share/bedtools/test/negativecontrol/test-negativecontrol.sh
  • usr/share/bedtools/test/reldist/test-reldist.sh
  • usr/share/bedtools/test/sample/test-sample.sh
  • usr/share/bedtools/test/shift/test-shift.sh
  • usr/share/bedtools/test/shuffle/test-shuffle.sh
  • usr/share/bedtools/test/slop/test-slop.sh
  • usr/share/bedtools/test/sort/test-sort.sh
  • usr/share/bedtools/test/spacing/test-spacing.sh
  • usr/share/bedtools/test/split/test-split.sh
  • usr/share/bedtools/test/subtract/test-subtract.sh

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 36)
  • debian/changelog (line 39)
  • debian/changelog (line 41)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.1.3 (released 2017-12-27) (current is 4.3.0)
• I testsuite-autopkgtest-missing

berkeley-express (1.5.2+dfsg-1+b2; main)

• X binary-file-built-without-LFS-support
  • usr/lib/debian-med/bin/express

• X debian-watch-does-not-check-gpg-signature

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 13)
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)
• I tar-errors-from-source
  • Ignoring unknown extended header keyword 'LIBARCHIVE.creationtime'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.dev'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.ino'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
  • Ignoring unknown extended header keyword 'SCHILY.nlink'
• I testsuite-autopkgtest-missing

bio-rainbow

• P debian-changelog-line-too-short
  • DEP3 (line 17) [amd64, i386]
  • DEP5 (line 18) [amd64, i386]
• O script-with-language-extension
  • usr/bin/select_all_rbcontig.pl [amd64, i386]
  • usr/bin/select_best_rbcontig.pl [amd64, i386]
  • usr/bin/select_best_rbcontig_plus_read1.pl [amd64, i386]
  • usr/bin/select_sec_rbcontig.pl [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/bio-rainbow similiarity similarity [amd64, i386]
  • usr/bin/rbasm similiarity similarity [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/rbasm.1.gz similiarity similarity [amd64, i386]

• X debian-watch-does-not-check-gpg-signature

bio-tradis

• X application-in-library-section
  • perl usr/bin/add_tradis_tags usr/bin/bacteria_tradis usr/bin/check_tradis_tags usr/bin/combine_tradis_plots usr/bin/filter_tradis_tags usr/bin/remove_tradis_tags usr/bin/tradis_comparison usr/bin/tradis_comparison.R usr/bin/tradis_essentiality usr/bin/tradis_essentiality.R usr/bin/tradis_gene_insert_sites usr/bin/tradis_merge_plots usr/bin/tradis_plot
• W binary-without-manpage
  • usr/bin/tradis_comparison.R
  • usr/bin/tradis_essentiality.R

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.bioinformatics.org/biococoa/downloads/
• P file-contains-trailing-whitespace
  • debian/changelog (line 87)
• P package-does-not-use-debhelper-or-cdbs
• P source-contains-empty-directory
  • BCAppKit/2.0-cleanup/
  • BCFoundation/2.0-cleanup/
  • BCFoundation/Tests/TestFiles/
• I testsuite-autopkgtest-missing

libbiococoa-dev (2.2.2-4+b1; main)

• P debian-changelog-line-too-short
  • DEP5 (line 4) [amd64, i386]
• I possible-documentation-but-no-doc-base-registration

libbiococoa2 (2.2.2-4+b1; main)

• X binary-file-built-without-LFS-support
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
• P debian-changelog-line-too-short
  • DEP5 (line 4) [amd64, i386]
• I hardening-no-bindnow
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 [amd64, i386]
• X shlib-calls-exit
  • usr/lib/GNUstep/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2 [amd64, i386]

libbiococoa2-dbgsym (2.2.2-4+b1; main)

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/25/4436612893978a6efabcfe669210232d8d43d7.debug
  • usr/lib/debug/.build-id/9c/c8ea88fd296f6ce77fb4915fac219023d3d5a5.debug

• X debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • reports/
• I testsuite-autopkgtest-missing

libbiojava-java

• I javalib-but-no-public-jars
• I possible-documentation-but-no-doc-base-registration

libbiojava-java-demos

• X duplicate-files
  • usr/share/doc/libbiojava-java-demos/examples/dp/fake.fasta.gz usr/share/doc/libbiojava-java-demos/examples/files/fake.fasta.gz
  • usr/share/doc/libbiojava-java-demos/examples/dp/fakepromoter.xml.gz usr/share/doc/libbiojava-java-demos/examples/files/fakepromoter.xml.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/AL121903.embl.gz usr/share/doc/libbiojava-java-demos/examples/gff/AL121903.embl.gz usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.embl.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/AL121903.genbank.gz usr/share/doc/libbiojava-java-demos/examples/seq/AL121903.genbank.gz
  • usr/share/doc/libbiojava-java-demos/examples/files/varC4-2.gff.gz usr/share/doc/libbiojava-java-demos/examples/gff/varC4-2.gff.gz

libbiojava-java-doc

• X duplicate-files
  • usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js usr/share/doc/libbiojava-java/api/jquery/jquery-3.3.1.js
• W embedded-javascript-library
  • usr/share/doc/libbiojava-java/api/jquery/external/jquery/jquery.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-3.3.1.js please use libjs-jquery
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.js please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.css please use libjs-jquery-ui
  • usr/share/doc/libbiojava-java/api/jquery/jquery-ui.min.js please use libjs-jquery-ui

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 108)
• W patch-file-present-but-not-mentioned-in-series
  • fix_code_to_support_latest_jmol
  • fix_uselog4j1
  • java8_compatibility.patch
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libbiojava4-java

• O empty-binary-package
• O javalib-but-no-public-jars

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 5
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 13)
  • debian/changelog (line 3)
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)

python3-biomaj3

• X application-in-library-section
  • python usr/bin/biomaj_migrate_database.py
• W binary-without-manpage
  • usr/bin/biomaj_migrate_database.py
• X library-package-name-for-application
  • usr/bin/biomaj_migrate_database.py
• W script-with-language-extension
  • usr/bin/biomaj_migrate_database.py
• I unknown-field-in-control
  • python-egg-name

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 7)
• I out-of-date-standards-version
  • 4.1.3 (released 2017-12-27) (current is 4.3.0)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

python3-biomaj3-cli

• X application-in-library-section
  • python usr/bin/biomaj-cli usr/bin/biomaj-cli.py
• W binary-without-manpage
  • usr/bin/biomaj-cli
  • usr/bin/biomaj-cli.py
• X library-package-name-for-application
  • usr/bin/biomaj-cli usr/bin/biomaj-cli.py
• W script-with-language-extension
  • usr/bin/biomaj-cli.py
• I unknown-field-in-control
  • python-egg-name

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 3)
  • debian/changelog (line 9)
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)
• X upstream-metadata-file-is-missing

python3-biomaj3-core

• I unknown-field-in-control
  • python-egg-name

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 3)
• I out-of-date-standards-version
  • 4.1.3 (released 2017-12-27) (current is 4.3.0)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing

python3-biomaj3-daemon

• X application-in-library-section
  • python usr/bin/biomaj-daemon-consumer usr/bin/biomaj-daemon-web usr/bin/biomaj_daemon_consumer.py
• W binary-without-manpage
  • usr/bin/biomaj-daemon-consumer
  • usr/bin/biomaj-daemon-web
  • usr/bin/biomaj_daemon_consumer.py
• X library-package-name-for-application
  • usr/bin/biomaj-daemon-consumer usr/bin/biomaj-daemon-web usr/bin/biomaj_daemon_consumer.py
• W script-with-language-extension
  • usr/bin/biomaj_daemon_consumer.py
• I unknown-field-in-control
  • python-egg-name

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 3)
• X upstream-metadata-file-is-missing

python3-biomaj3-download

• X application-in-library-section
  • python usr/bin/biomaj-download-consumer usr/bin/biomaj-download-web usr/bin/biomaj_download_consumer.py
• W binary-without-manpage
  • usr/bin/biomaj-download-consumer
  • usr/bin/biomaj-download-web
  • usr/bin/biomaj_download_consumer.py
• X library-package-name-for-application
  • usr/bin/biomaj-download-consumer usr/bin/biomaj-download-web usr/bin/biomaj_download_consumer.py
• W script-with-language-extension
  • usr/bin/biomaj_download_consumer.py
• I unknown-field-in-control
  • python-egg-name

• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 14)
  • debian/changelog (line 3)
• I out-of-date-standards-version
  • 4.1.3 (released 2017-12-27) (current is 4.3.0)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

python3-biomaj3-process

• X application-in-library-section
  • python usr/bin/biomaj-process-consumer usr/bin/biomaj-process-web usr/bin/biomaj_process_consumer.py
• W binary-without-manpage
  • usr/bin/biomaj-process-consumer
  • usr/bin/biomaj-process-web
  • usr/bin/biomaj_process_consumer.py
• X library-package-name-for-application
  • usr/bin/biomaj-process-consumer usr/bin/biomaj-process-web usr/bin/biomaj_process_consumer.py
• W script-with-language-extension
  • usr/bin/biomaj_process_consumer.py
• I unknown-field-in-control
  • python-egg-name

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 3)
• X upstream-metadata-file-is-missing

python3-biomaj3-user

• X application-in-library-section
  • python usr/bin/biomaj-users usr/bin/biomaj-users-web usr/bin/biomaj-users.py
• W binary-without-manpage
  • usr/bin/biomaj-users
  • usr/bin/biomaj-users-web
  • usr/bin/biomaj-users.py
• X library-package-name-for-application
  • usr/bin/biomaj-users usr/bin/biomaj-users-web usr/bin/biomaj-users.py
• O script-with-language-extension
  • usr/bin/biomaj-users.py
• I unknown-field-in-control
  • python-egg-name

• P co-maintained-package-with-no-vcs-fields
• W debian-rules-sets-DEB_BUILD_OPTIONS
  • line 3
• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.0.0 (released 2017-05-28) (current is 4.3.0)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

python3-biomaj3-zipkin

• I extended-description-is-probably-too-short
• I unknown-field-in-control
  • python-egg-name

• X debian-watch-does-not-check-gpg-signature

libbio-perl-perl

• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Root::Exception.3pm.gz
  • usr/share/man/man3/Bio::Root::IO.3pm.gz
  • usr/share/man/man3/Bio::Root::Root.3pm.gz
  • usr/share/man/man3/Bio::Root::RootI.3pm.gz
  • usr/share/man/man3/Bio::Root::Storable.3pm.gz
  • usr/share/man/man3/Bio::Root::Test.3pm.gz
  • usr/share/man/man3/Bio::Root::Utilities.3pm.gz
  • usr/share/man/man3/Bio::Root::Version.3pm.gz
  • usr/share/man/man3/Bio::Tools::SeqPattern::Backtranslate.3pm.gz
  • usr/share/man/man3/Bio::TreeIO::NewickParser.3pm.gz
  • usr/share/man/man3/Bio::TreeIO::newick.3pm.gz
• W manpage-has-errors-from-man
  • usr/share/man/man3/Bio::SeqIO::bsml.3pm.gz 299: warning [p 4, 0.2i]: can't break line
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/perl5/Bio/Symbol/README.Symbol
  • usr/share/perl5/Bio/Tools/Run/README
• I spelling-error-in-manpage
  • usr/share/man/man3/Bio::Seq::LargeSeqI.3pm.gz resetable resettable
  • usr/share/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3pm.gz desribe describe
  • usr/share/man/man3/Bio::Tools::Run::Phylo::PhyloBase.3pm.gz desribe describe
  • usr/share/man/man3/Bio::Tools::Run::WrapperBase::CommandExts.3pm.gz contruction construction

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 119)
  • debian/changelog (line 167)
• X libmodule-build-perl-needs-to-be-in-build-depends
• X upstream-metadata-file-is-missing

bioperl-run

• O script-with-language-extension
  • usr/bin/bp_multi_hmmsearch.pl
  • usr/bin/bp_panalysis.pl
  • usr/bin/bp_papplmaker.pl
  • usr/bin/bp_run_neighbor.pl
  • usr/bin/bp_run_protdist.pl
• I unused-override
  • script-with-language-extension usr/bin/bp_bioperl_application_installer.pl

libbio-perl-run-perl

• I extended-description-is-probably-too-short
• W manpage-has-bad-whatis-entry
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Blat.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::FastTree.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Raxml.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Primate.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Prints.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Profile.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Signalp.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::TribeMCL.3pm.gz
  • usr/share/man/man3/Bio::Tools::Run::Vista.3pm.gz
• W manpage-has-errors-from-pod2man
  • usr/share/man/man3/Bio::DB::SoapEUtilities::Result.3pm.gz:419
  • usr/share/man/man3/Bio::Tools::Run::ERPIN.3pm.gz:321
• I spelling-error-in-manpage
  • usr/share/man/man3/Bio::Tools::Run::Alignment::Exonerate.3pm.gz arugment argument
  • usr/share/man/man3/Bio::Tools::Run::Analysis::soap.3pm.gz allows to allows one to
  • usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm.gz argment argument
  • usr/share/man/man3/Bio::Tools::Run::EMBOSSacd.3pm.gz retrive retrieve
  • usr/share/man/man3/Bio::Tools::Run::Hmmer.3pm.gz specifiy specify
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phast::PhyloFit.3pm.gz flexability flexibility
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::Neighbor.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm.gz documetation documentation
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz bootstap bootstrap
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz orginal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3pm.gz orgininal original
  • usr/share/man/man3/Bio::Tools::Run::Phylo::Phyml.3pm.gz explicitely explicitly
  • usr/share/man/man3/Bio::Tools::Run::StandAloneBlastPlus.3pm.gz exeception exception

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://eddylab.org/software/squid/
• P file-contains-trailing-whitespace
  • debian/changelog (line 127)
  • debian/changelog (line 36)
  • debian/changelog (line 38)
  • debian/changelog (line 39)
  • debian/changelog (line 41)
  • debian/changelog (line 42)
  • debian/changelog (line 44)
  • debian/changelog (line 45)
  • debian/changelog (line 46)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • Scripts/
  • Shiva/

biosquid

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/revcomp [amd64, i386]

libsquid-dev

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]

libsquid1

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libsquid.so.1.0.0
  • usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 [amd64, i386]
• X shlib-calls-exit
  • usr/lib/i386-linux-gnu/libsquid.so.1.0.0
  • usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• W inconsistent-appstream-metadata-license
  • doc/biosyntax-gedit.metainfo.xml (cc0-1.0 != gpl-3)
  • doc/biosyntax-vim.metainfo.xml (cc0-1.0 != gpl-3)
• I testsuite-autopkgtest-missing

biosyntax-example

• I duplicated-compressed-file
  • usr/share/doc/biosyntax/examples/nt-seq/test2.fq.gz

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 79)
  • debian/rules (line 80)
• I testsuite-autopkgtest-missing

bitseq

• W binary-without-manpage
  • usr/bin/biocUpdate [amd64, i386]
  • usr/bin/checkTR [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/LGPL [amd64, i386]
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python) [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

blasr

• I hardening-no-bindnow
  • usr/bin/blasr
  • usr/bin/sawriter
• O hardening-no-fortify-functions
  • usr/bin/blasr

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/blimps-([0-9.]+)\.tar\.gz
• I testsuite-autopkgtest-missing

blimps-examples

• X duplicate-files
  • usr/share/doc/blimps-examples/examples/processor/distribution/fasta.in.seqs usr/share/doc/blimps-examples/examples/processor/distribution/stockholm.in.seqs
• X package-contains-no-arch-dependent-files

blimps-utils

• X duplicate-files
  • usr/share/doc/blimps-utils/html/biased_blocks.html usr/share/doc/blimps-utils/html/biassed_blocks.html

libblimps3

• I no-symbols-control-file
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0
• X shlib-calls-exit
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0
• I spelling-error-in-binary
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 nam name
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 occured occurred
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 outputing outputting
  • usr/lib/x86_64-linux-gnu/libblimps.so.3.0.0 retur return

• X debian-watch-does-not-check-gpg-signature

bolt-lmm (2.3.2+dfsg-3+b1; main)

• I spelling-error-in-binary
  • usr/bin/bolt helpFull helpful

• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 11)
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 130)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I override_dh_auto_test-does-not-check-DEB_BUILD_OPTIONS
  • (line 45)
• P package-uses-old-debhelper-compat-version
  • 9
• W spelling-error-in-patch-description
  • debian/patches/gcc-64bit.patch unfortunatly unfortunately
• I vcs-field-uses-insecure-uri
  • vcs-svn svn://anonscm.debian.org/debian-med/trunk/packages/bowtie/trunk/
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/viewvc/debian-med/trunk/packages/bowtie/trunk/
  • vcs-svn svn://anonscm.debian.org/debian-med/trunk/packages/bowtie/trunk/

bowtie-examples

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/LGPL

• X debian-watch-does-not-check-gpg-signature

bowtie

• O binary-without-manpage
  • usr/bin/bowtie-align-l
  • usr/bin/bowtie-align-l-debug
  • usr/bin/bowtie-align-s
  • usr/bin/bowtie-align-s-debug
  • usr/bin/bowtie-build-l
  • usr/bin/bowtie-build-l-debug
  • usr/bin/bowtie-build-s
  • usr/bin/bowtie-build-s-debug
  • usr/bin/bowtie-inspect-l
  • usr/bin/bowtie-inspect-l-debug
  • usr/bin/bowtie-inspect-s
  • usr/bin/bowtie-inspect-s-debug
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• X duplicate-files
  • usr/share/doc/bowtie/tests/example1.out usr/share/doc/bowtie/tests/example3.out usr/share/doc/bowtie/tests/example8.out
  • usr/share/doc/bowtie/tests/example6.out usr/share/doc/bowtie/tests/example9.out

• W ancient-standards-version
  • 3.9.6 (released 2014-09-17) (current is 4.3.0)
• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 3)
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 131)
  • debian/changelog (line 132)
  • debian/changelog (line 138)
  • debian/changelog (line 145)
  • debian/changelog (line 152)
  • debian/changelog (line 153)
  • debian/changelog (line 170)
  • debian/changelog (line 29)
  • debian/changelog (line 71)
  • debian/changelog (line 72)
  • debian/changelog (line 73)
  • debian/changelog (line 79)
  • debian/changelog (line 90)
  • debian/control (line 24)
  • debian/control (line 25)
  • debian/control (line 26)
  • debian/control (line 27)
  • debian/control (line 30)
  • debian/control (line 39)
  • debian/control (line 40)
  • debian/control (line 41)
  • debian/control (line 42)
  • debian/control (line 45)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 9
• W patch-file-present-but-not-mentioned-in-series
  • fix_makefile_machine_detection.patch
• W unnecessary-testsuite-autopkgtest-field
• I vcs-field-uses-insecure-uri
  • vcs-git git://anonscm.debian.org/debian-med/bowtie2.git
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/bowtie2.git
  • vcs-git git://anonscm.debian.org/debian-med/bowtie2.git

bowtie2-examples

• I example-incorrect-path-for-interpreter
  • usr/share/doc/bowtie2/examples/scripts/debug_wrapper.pl (#!/usr/bin/env perl != /usr/bin/perl)

• X debian-watch-does-not-check-gpg-signature

bowtie2

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• X debian-watch-does-not-check-gpg-signature

boxshade

• X binary-file-built-without-LFS-support
  • usr/lib/boxshade/boxshade

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 6)
  • debian/changelog (line 73)
  • debian/rules (line 12)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

bppphyview

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I extended-description-is-probably-too-short
• I spelling-error-in-copyright
  • therefor therefore [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 153)
  • debian/changelog (line 48)
  • debian/changelog (line 54)
• I testsuite-autopkgtest-missing

bppsuite

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/bppdist [amd64, i386]
  • usr/bin/bppmixedlikelihoods [amd64, i386]
  • usr/bin/bpppopstats [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/bppalnscore occurence occurrence [amd64, i386]
  • usr/bin/bppancestor particularily particularly [amd64, i386]
  • usr/bin/bppmixedlikelihoods particularily particularly [amd64, i386]
  • usr/bin/bppml particularily particularly [amd64, i386]
  • usr/bin/bpppopstats ouptut output [amd64, i386]
  • usr/bin/bppseqgen begining beginning [amd64, i386]
  • usr/bin/bpptreedraw controler controller [amd64, i386]
• I spelling-error-in-copyright
  • therefor therefore [amd64, i386]

bppsuite-examples

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• X duplicate-files
  • usr/share/doc/bppsuite-examples/examples/MaximumLikelihood/Nucleotides/Homogeneous/Ancestor.bpp usr/share/doc/bppsuite-examples/examples/MaximumLikelihood/Nucleotides/NonHomogeneousGeneral/Ancestor.bpp
• I spelling-error-in-copyright
  • therefor therefore

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)
• P source-contains-empty-directory
  • bin/
  • lib/
• I testsuite-autopkgtest-missing

brig

• W bad-jar-name
  • usr/share/java/BRIG-0.95.jar [amd64, i386]
• W binary-without-manpage
  • usr/bin/brig [amd64, i386]
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL [amd64, i386]
• X package-contains-no-arch-dependent-files

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)

bwa

• I spelling-error-in-manpage
  • usr/share/man/man1/bwa.1.gz extentions extensions
  • usr/share/man/man1/bwa.1.gz occurence occurrence
  • usr/share/man/man1/bwa.1.gz openning opening
  • usr/share/man/man1/bwa.1.gz ouptut output
  • usr/share/man/man1/bwa.1.gz overriden overridden

• I debian-rules-parses-dpkg-parsechangelog
  • (line 9)
• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 7)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

cain

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/cain.desktop
• I package-contains-documentation-outside-usr-share-doc
  • usr/include/cain/loki/readme.txt

cain-examples

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/cain/examples/cain/dsmts23/Readme.txt
  • usr/share/cain/examples/sbml/dsmts31/README.txt

• X debian-watch-does-not-check-gpg-signature
• P package-does-not-install-examples
  • sdk/libraries/qtpropertybrowser/examples/

libcamitk-dev

• W breaks-without-version
  • libvtk6-dev [amd64, i386]
  • libvtk6-java [amd64, i386]
  • libvtk6-jni [amd64, i386]
  • libvtk6-qt-dev [amd64, i386]
• X development-package-ships-elf-binary-in-path
  • usr/bin/camitk-cepgenerator [amd64, i386]
  • usr/bin/camitk-testactions [amd64, i386]
  • usr/bin/camitk-testcomponents [amd64, i386]
  • usr/bin/camitk-wizard [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/camitk-testcomponents [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/camitk-wizard exemple example [amd64, i386]
  • usr/bin/camitk-wizard leAT least [amd64, i386]
  • usr/bin/camitk-wizard wether whether [amd64, i386]

libcamitk4

• I no-symbols-control-file
  • usr/lib/libcamitkcore.so.4.1.2 [amd64, i386]
  • usr/lib/libmonitoring.so.4.1.2 [amd64, i386]
• O package-name-doesnt-match-sonames
  • libcamitkcore4 libmonitoring4 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/camitk-4.1/actions/libmml.so.4.1.2 Pres Press
  • usr/lib/camitk-4.1/components/libdicom.so.4.1.2 Serie Series [amd64, i386]
  • usr/lib/libcamitkcore.so.4.1.2 Substract Subtract [amd64, i386]
  • usr/lib/libmonitoring.so.4.1.2 Pres Press
  • usr/lib/libmonitoring.so.4.1.2 ment meant

libcamitk4-data

• I duplicated-compressed-file
  • usr/share/camitk-4.1/testdata/BigEndianCompressed.img.gz

libqtpropertybrowser-dev

• X package-contains-no-arch-dependent-files

libqtpropertybrowser4

• I no-symbols-control-file
  • usr/lib/libqtpropertybrowser.so.4.1.2 [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 24)
  • debian/changelog (line 27)
  • debian/changelog (line 4)
  • debian/rules (line 18)
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libcamp0.8

• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libcamp.so.0.8.2
  • usr/lib/x86_64-linux-gnu/libcamp.so.0.8.2

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing
• I wildcard-matches-nothing-in-dep5-copyright
  • src/falcon_sense/* (paragraph at line 22)

canu

• I spelling-error-in-binary
  • usr/lib/canu/bin/alignGFA misformed malformed
  • usr/lib/canu/bin/bogart beacuse because
  • usr/lib/canu/bin/bogart upto up to
  • usr/lib/canu/bin/overlapInCorePartition interally internally
  • usr/lib/canu/bin/sequence seperated separated
  • usr/lib/canu/bin/splitReads ouput output
  • usr/lib/canu/bin/sqStoreCreate nam name
  • usr/lib/canu/bin/trimReads ouput output

• X debian-watch-does-not-check-gpg-signature

libcassie-dev

• X package-contains-no-arch-dependent-files

libcassie-doc

• X duplicate-files
  • usr/share/doc/cassiopee/html/search/all_2.js usr/share/doc/cassiopee/html/search/variables_2.js
  • usr/share/doc/cassiopee/html/search/all_3.js usr/share/doc/cassiopee/html/search/functions_1.js
  • usr/share/doc/cassiopee/html/search/all_4.js usr/share/doc/cassiopee/html/search/functions_2.js
  • usr/share/doc/cassiopee/html/search/all_6.js usr/share/doc/cassiopee/html/search/functions_4.js
  • usr/share/doc/cassiopee/html/search/all_8.js usr/share/doc/cassiopee/html/search/variables_5.js
  • usr/share/doc/cassiopee/html/search/all_9.js usr/share/doc/cassiopee/html/search/functions_5.js
  • usr/share/doc/cassiopee/html/search/all_b.js usr/share/doc/cassiopee/html/search/functions_6.js

libcassie1v5

• I no-symbols-control-file
  • usr/lib/libcassie.so.1.0.0 [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• W debian-watch-file-should-mangle-version
  • line 3
• P source-contains-empty-directory
  • bin/lib/
  • db/cogs/
  • db/comparison_genomes/
  • sample_projects/sample_project_1/analysis/
  • sample_projects/sample_project_2/analysis/
  • sample_projects/sample_project_3/analysis/
  • sample_projects/sample_project_4/blast/
  • sample_projects/sample_project_5/analysis/
  • sample_projects/sample_project_5/blast/
  • sample_projects/sample_project_6/analysis/
  • sample_projects/sample_project_6/features/
  • sample_projects/test_blastn/analysis/
  • sample_projects/test_blastn/features/
  • sample_projects/test_blastp/analysis/
  • sample_projects/test_blastp/blast/blast_db/
  • sample_projects/test_blastp/blast/blast_results_local/
  • sample_projects/test_blastp/comparison_genomes/proteins/
  • sample_projects/test_blastp/features/
  • sample_projects/test_blastx/analysis/
  • sample_projects/test_blastx/blast/blast_db/
  • sample_projects/test_blastx/blast/blast_results_local/
  • sample_projects/test_blastx/comparison_genomes/proteins/
  • sample_projects/test_blastx/features/
  • sample_projects/test_orfs/analysis/
  • sample_projects/test_orfs/blast/
  • sample_projects/test_orfs/comparison_genomes/
  • sample_projects/test_orfs/features/
  • sample_projects/test_plots/analysis/
  • sample_projects/test_plots/blast/
  • sample_projects/test_plots/comparison_genomes/
  • sample_projects/test_plots/features/
  • sample_projects/test_tblastn/analysis/
  • sample_projects/test_tblastn/features/
  • sample_projects/test_tblastx/analysis/
  • sample_projects/test_tblastx/features/

cct

• W executable-not-elf-or-script
  • usr/share/cct/lib/assign_cogs/assign_cogs.pl
  • usr/share/cct/lib/cgview_xml_builder/cgview_xml_builder.pl
  • usr/share/cct/lib/convert_vcf_to_features/test.sh
• I package-contains-documentation-outside-usr-share-doc
  • usr/share/cct/lib/assign_cogs/README.txt
  • usr/share/cct/lib/cgview_xml_builder/README.txt
  • usr/share/cct/lib/convert_vcf_to_features/README.txt
  • usr/share/cct/lib/get_cds/README.txt
  • usr/share/cct/lib/get_orfs/README.txt
  • usr/share/cct/lib/local_blast_client/README.txt
  • usr/share/cct/lib/ncbi_search/README.txt
  • usr/share/cct/lib/sequence_to_multi_fasta/README.txt

cct-examples

• X duplicate-files
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_2/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_3/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_4/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_5/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/sample_project_6/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastn/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastp/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_blastx/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_orfs/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_plots/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_tblastn/cgview_xml_builder.pl.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/cgview_xml_builder.pl.gz
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_a.png usr/share/doc/cct/examples/sample_projects/sample_project_1/maps/sample_project_1_project_settings_b.png
  • usr/share/doc/cct/examples/sample_projects/sample_project_3/comparison_genomes/NC_000913.gbk.gz usr/share/doc/cct/examples/sample_projects/sample_project_5/comparison_genomes/E_coli.gbk.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nhr
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_end_of_orf_rev_comp.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf.fasta_split.nhr usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nhr
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastn/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq usr/share/doc/cct/examples/sample_projects/test_tblastx/blast/blast_db/match_start_of_orf_rev_comp.fasta_split.nsq
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_end_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_end_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_end_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_end_of_orf_rev_comp.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_start_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_start_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_start_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/match_start_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/match_start_of_orf_rev_comp.fasta usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/match_start_of_orf_rev_comp.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_end_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_end_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_end_of_orf.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_end_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_end_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_end_of_orf_rev_comp.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_start_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_start_of_orf.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_start_of_orf.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/comparison_genomes/split/match_start_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastn/comparison_genomes/split/match_start_of_orf_rev_comp.fasta_split usr/share/doc/cct/examples/sample_projects/test_tblastx/comparison_genomes/split/match_start_of_orf_rev_comp.fasta_split
  • usr/share/doc/cct/examples/sample_projects/test_blastn/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_blastp/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_blastx/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_plots/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_tblastn/maps/medium.html usr/share/doc/cct/examples/sample_projects/test_tblastx/maps/medium.html
  • usr/share/doc/cct/examples/sample_projects/test_blastn/maps/medium.png usr/share/doc/cct/examples/sample_projects/test_blastx/maps/medium.png usr/share/doc/cct/examples/sample_projects/test_tblastx/maps/medium.png
  • usr/share/doc/cct/examples/sample_projects/test_blastn/reference_genome/split/two_copies_of_long_ORF_opposite_directions.fasta_split.gz usr/share/doc/cct/examples/sample_projects/test_blastx/reference_genome/split/two_copies_of_long_ORF_opposite_directions.fasta_split.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/reference_genome/split/two_copies_of_long_ORF_opposite_directions.fasta_split.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastn/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_blastp/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_blastx/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_tblastn/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/reference_genome/two_copies_of_long_ORF_opposite_directions.fasta.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastp/comparison_genomes/match_end_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_blastx/comparison_genomes/match_end_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastp/comparison_genomes/match_start_of_orf.fasta usr/share/doc/cct/examples/sample_projects/test_blastx/comparison_genomes/match_start_of_orf.fasta
  • usr/share/doc/cct/examples/sample_projects/test_blastp/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs.gz usr/share/doc/cct/examples/sample_projects/test_tblastn/reference_genome/orfs/two_copies_of_long_ORF_opposite_directions.fasta_orfs.gz
  • usr/share/doc/cct/examples/sample_projects/test_blastx/maps/cgview_xml/medium.xml.gz usr/share/doc/cct/examples/sample_projects/test_tblastx/maps/cgview_xml/medium.xml.gz
• I package-contains-empty-directory
  • usr/share/doc/cct/examples/sample_projects/sample_project_1/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_2/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_3/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_4/blast/
  • usr/share/doc/cct/examples/sample_projects/sample_project_5/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_5/blast/
  • usr/share/doc/cct/examples/sample_projects/sample_project_6/analysis/
  • usr/share/doc/cct/examples/sample_projects/sample_project_6/features/
  • usr/share/doc/cct/examples/sample_projects/test_blastn/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_blastn/features/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/blast/blast_db/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/blast/blast_results_local/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/comparison_genomes/proteins/
  • usr/share/doc/cct/examples/sample_projects/test_blastp/features/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/blast/blast_db/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/blast/blast_results_local/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/comparison_genomes/proteins/
  • usr/share/doc/cct/examples/sample_projects/test_blastx/features/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/blast/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/comparison_genomes/
  • usr/share/doc/cct/examples/sample_projects/test_orfs/features/
  • usr/share/doc/cct/examples/sample_projects/test_plots/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_plots/blast/
  • usr/share/doc/cct/examples/sample_projects/test_plots/comparison_genomes/
  • usr/share/doc/cct/examples/sample_projects/test_plots/features/
  • usr/share/doc/cct/examples/sample_projects/test_tblastn/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_tblastn/features/
  • usr/share/doc/cct/examples/sample_projects/test_tblastx/analysis/
  • usr/share/doc/cct/examples/sample_projects/test_tblastx/features/

• I debian-rules-parses-dpkg-parsechangelog
  • (line 12)
  • (line 13)
• X debian-watch-does-not-check-gpg-signature
• I file-contains-fixme-placeholder
  • debian/rules:71 FIXME
• P file-contains-trailing-whitespace
  • debian/changelog (line 95)
  • debian/control (line 26)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

cd-hit

• X binary-file-built-without-LFS-support
  • usr/lib/cd-hit/cd-hit [amd64, i386]
  • usr/lib/cd-hit/cd-hit-2d [amd64, i386]
  • usr/lib/cd-hit/cd-hit-454 [amd64, i386]
  • usr/lib/cd-hit/cd-hit-div [amd64, i386]
  • usr/lib/cd-hit/cd-hit-est [amd64, i386]
  • usr/lib/cd-hit/cd-hit-est-2d [amd64, i386]
• W binary-without-manpage
  • usr/bin/cdhit [amd64, i386]
  • usr/bin/cdhit-2d [amd64, i386]
  • usr/bin/cdhit-454 [amd64, i386]
  • usr/bin/cdhit-est [amd64, i386]
  • usr/bin/cdhit-est-2d [amd64, i386]
  • usr/bin/clstr2tree [amd64, i386]
  • usr/bin/clstr_merge [amd64, i386]
  • usr/bin/clstr_merge_noorder [amd64, i386]
  • usr/bin/clstr_reduce [amd64, i386]
  • usr/bin/clstr_renumber [amd64, i386]
  • usr/bin/clstr_rev [amd64, i386]
  • usr/bin/clstr_sort_by [amd64, i386]
  • usr/bin/clstr_sort_prot_by [amd64, i386]
  • usr/bin/make_multi_seq [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/cd-hit/cd-hit-div writen written [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/cd-hit-2d-para.1.gz requred required [amd64, i386]
  • usr/share/man/man1/cd-hit-para.1.gz requred required [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 42)
  • debian/changelog (line 50)
• P hyphen-in-upstream-part-of-debian-changelog-version
  • 0.99-20100722
• I testsuite-autopkgtest-missing

cdbfasta

• I hardening-no-fortify-functions
  • usr/bin/cdbfasta [amd64, i386]
  • usr/bin/cdbyank [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P package-uses-old-debhelper-compat-version
  • 10
• I testsuite-autopkgtest-missing
• W vcs-obsolete-in-debian-infrastructure
  • vcs-browser https://anonscm.debian.org/cgit/debian-med/centrifuge.git
  • vcs-git https://anonscm.debian.org/git/debian-med/centrifuge.git

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

centrifuge

• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/GPL
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I hardening-no-fortify-functions
  • usr/lib/centrifuge/centrifuge-build-bin
  • usr/lib/centrifuge/centrifuge-class
  • usr/lib/centrifuge/centrifuge-inspect-bin
• I possible-documentation-but-no-doc-base-registration
• W zero-byte-file-in-doc-directory
  • usr/share/doc/centrifuge/html/manual.inc.html

• W build-depends-on-python-sphinx-only
• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)
• W python-foo-but-no-python3-foo
  • python-cfflib
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

• X debian-watch-does-not-check-gpg-signature
• P insane-line-length-in-source-file
  • src/ca/ualberta/stothard/cgview/includes/overlib.js line length is 562 characters (>512)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• P source-contains-empty-directory
  • ca/ualberta/stothard/cgview/
  • lib/
• P source-contains-prebuilt-javascript-object
  • src/ca/ualberta/stothard/cgview/includes/overlib.js line length is 562 characters (>512)
• O source-is-missing
  • src/ca/ualberta/stothard/cgview/includes/overlib.js line length is 562 characters (>512)
• I testsuite-autopkgtest-missing

cgview

• X package-contains-no-arch-dependent-files

• X debian-watch-does-not-check-gpg-signature

changeo

• W binary-without-manpage
  • usr/bin/AlignRecords.py
  • usr/bin/AssignGenes.py
  • usr/bin/BuildTrees.py
  • usr/bin/ConvertDb.py
  • usr/bin/CreateGermlines.py
  • usr/bin/DefineClones.py
  • usr/bin/MakeDb.py
  • usr/bin/ParseDb.py
• O script-with-language-extension
  • usr/bin/AlignRecords.py
  • usr/bin/AssignGenes.py
  • usr/bin/BuildTrees.py
  • usr/bin/ConvertDb.py
  • usr/bin/CreateGermlines.py
  • usr/bin/DefineClones.py
  • usr/bin/MakeDb.py
  • usr/bin/ParseDb.py

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

libcharls2

• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libCharLS.so.2.0
  • usr/lib/x86_64-linux-gnu/libCharLS.so.2.0
• I symbols-file-missing-build-depends-package-field

• X debian-watch-does-not-check-gpg-signature

• X debian-watch-does-not-check-gpg-signature

• X debian-watch-does-not-check-gpg-signature

libcifti0

• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libCifti.so.1.5
  • usr/lib/x86_64-linux-gnu/libCifti.so.1.5
• I no-symbols-control-file
  • usr/lib/i386-linux-gnu/libCifti.so.1.5
  • usr/lib/x86_64-linux-gnu/libCifti.so.1.5

• X debian-watch-does-not-check-gpg-signature

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://circos.ca/software/download

circos

• X duplicate-files
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.10e6.txt.gz usr/share/doc/circos/examples/data/heatmap.hs.rn.10e6.txt.gz
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.20e6.txt.gz usr/share/doc/circos/examples/data/heatmap.hs.rn.20e6.txt.gz
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.50e6.txt usr/share/doc/circos/examples/data/heatmap.hs.rn.50e6.txt
  • usr/share/doc/circos/examples/data/heatmap.hs.mm.5e6.txt.gz usr/share/doc/circos/examples/data/heatmap.hs.rn.5e6.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.arabidopsis.tair10.txt usr/share/doc/circos/examples/data/karyotype/karyotype.arabidopsis.txt
  • usr/share/doc/circos/examples/data/karyotype/karyotype.chimp.pt4.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.chimp.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.drosophila.lowres.dm3.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.drosophila.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.human.hg19.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.human.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.mouse.mm10.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.mouse.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.rat.rn4.txt.gz usr/share/doc/circos/examples/data/karyotype/karyotype.rat.txt.gz
  • usr/share/doc/circos/examples/data/karyotype/karyotype.rm.3.txt usr/share/doc/circos/examples/data/karyotype/karyotype.rm.txt
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/circos.1.gz
• I spelling-error-in-manpage
  • usr/share/man/man1/circos.1.gz overide override
  • usr/share/man/man1/circos.1.gz unuseable unusable

fonts-circos-symbols

• I font-outside-font-dir
  • usr/share/circos/fonts/symbols/circossymbols.otf

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://circos.ca/software/download
• P source-contains-empty-directory
  • tools/binlinks/doc/
  • tools/resample/etc/
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

circos-tools

• I package-contains-documentation-outside-usr-share-doc
  • usr/share/circos/tools/clustal2link/1/README
  • usr/share/circos/tools/clustal2link/README
  • usr/share/circos/tools/connectogram/README
  • usr/share/circos/tools/tableviewer/README
• I package-contains-empty-directory
  • usr/share/circos/tools/binlinks/doc/
  • usr/share/circos/tools/resample/etc/

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bioinformatics.hungry.com/clearcut/clearcut-([0-9.]+).tar.gz
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)

clearcut

• X binary-file-built-without-LFS-support
  • usr/bin/clearcut [amd64, i386]
• I hardening-no-bindnow
  • usr/bin/clearcut [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/clearcut [amd64, i386]

clearcut-dbgsym

• W debug-file-with-no-debug-symbols
  • usr/lib/debug/.build-id/5d/5ed8df2679ea71a3917b066eec40301d815c63.debug
  • usr/lib/debug/.build-id/97/6ed010e96903595889314c49b1a36f953a3ae5.debug

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.xavierdidelot.xtreemhost.com/clonalframe.htm
• I testsuite-autopkgtest-missing

clonalframe

• X binary-file-built-without-LFS-support
  • usr/bin/ClonalFrame

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

clonalframeml

• I hardening-no-fortify-functions
  • usr/bin/ClonalFrameML [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

clonalorigin

• X binary-file-built-without-LFS-support
  • usr/bin/warg
• W binary-without-manpage
  • usr/bin/blocksplit
  • usr/bin/computeMedians
  • usr/bin/makeMauveWargFile
• I spelling-error-in-binary
  • usr/bin/warg lik link

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/omega/clustal-omega-(.*)\.tar\.gz
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

clustalo

• X binary-file-built-without-LFS-support
  • usr/bin/clustalo
• I spelling-error-in-binary
  • usr/bin/clustalo exceded exceeded
  • usr/bin/clustalo occured occurred

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/download/current/clustalw-([\.\d]*).tar.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 123)
  • debian/changelog (line 155)
  • debian/changelog (line 202)
  • debian/changelog (line 274)
  • debian/changelog (line 345)
  • debian/changelog (line 377)
  • debian/changelog (line 385)
  • debian/control (line 33)
  • debian/rules (line 19)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

clustalw

• X binary-file-built-without-LFS-support
  • usr/bin/clustalw

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.clustal.org/download/current/clustalx-([\.\d]*).tar.gz
• I testsuite-autopkgtest-missing

clustalx

• X binary-file-built-without-LFS-support
  • usr/bin/clustalx [amd64, i386]
• I desktop-entry-lacks-keywords-entry
  • usr/share/applications/clustalx.desktop [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/clustalx Pres Press [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://bonsai.hgc.jp/~mdehoon/software/cluster/software.htm
• P file-contains-trailing-whitespace
  • debian/changelog (line 93)
  • debian/rules (line 26)
• I testsuite-autopkgtest-missing

• X debian-watch-does-not-check-gpg-signature
• W spelling-error-in-patch-description
  • debian/patches/controldir Forwaded Forwarded

cnvkit

• I arch-dep-package-has-big-usr-share
  • 22243kB 97%
• W binary-without-manpage
  • usr/bin/cnvkit-cnv_annotate
  • usr/bin/cnvkit-cnv_expression_correlate
  • usr/bin/cnvkit-cnv_updater
  • usr/bin/cnvkit-cnv_ztest
  • usr/bin/cnvkit-guess_baits
  • usr/bin/cnvkit-skg_convert
  • usr/bin/snpfilter.sh
• W manpage-has-errors-from-man
  • usr/share/man/man1/cnvkit.1.gz 8: warning [p 1, 1.7i]: cannot adjust line
• W script-with-language-extension
  • usr/bin/snpfilter.sh

• O debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)
• P package-uses-deprecated-source-override-location
• I testsuite-autopkgtest-missing

codonw

• X binary-file-built-without-LFS-support
  • usr/bin/codonw
• I hardening-no-bindnow
  • usr/bin/codonw

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 89)

ncoils

• X binary-file-built-without-LFS-support
  • usr/bin/ncoils [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/ncoils [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• O debian-watch-file-should-mangle-version
  • line 3
• P source-contains-empty-directory
  • bin/
  • lib/

concavity

• X binary-file-built-without-LFS-support
  • usr/bin/concavity [amd64, i386]
• X non-consecutive-debian-revision
  • 0.1+dfsg.1-4 -> 0.1+dfsg.1-2 [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • tools/Darwin/
  • tools/Linux/
  • tools/win32/
• X upstream-metadata-file-is-missing

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 28)
  • debian/changelog (line 31)
  • debian/rules (line 55)

conservation-code

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://gforge.inria.fr/frs/?group_id=3008
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

crac

• W binary-without-manpage
  • usr/bin/crac-client
  • usr/bin/crac-index
• X duplicate-files
  • usr/share/doc/crac/examples/test_f/bug/bug-15677-genome.conf usr/share/doc/crac/examples/test_f/bug/bug-16581-genome.conf
  • usr/share/doc/crac/examples/test_f/bug/bug-15677-genome.ssa.gz usr/share/doc/crac/examples/test_f/bug/bug-16581-genome.ssa.gz
  • usr/share/doc/crac/examples/test_f/index_genomes.sh.trs usr/share/doc/crac/examples/test_f/launch_sg.sh.trs usr/share/doc/crac/examples/test_f/test_index.sh.trs
• W manpage-has-bad-whatis-entry
  • usr/share/man/man1/crac.1.gz
• I spelling-error-in-binary
  • usr/bin/crac Erorr Error
  • usr/bin/crac alignement alignment
  • usr/bin/crac informations information
  • usr/bin/crac sould should
  • usr/bin/crac-index informations information
• I spelling-error-in-copyright
  • therefor therefore
• I spelling-error-in-manpage
  • usr/share/man/man1/crac.1.gz alignement alignment
  • usr/share/man/man1/crac.1.gz differents different
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz informations information
  • usr/share/man/man1/crac.1.gz softwares software

• W ancient-python-version-field
  • x-python-version 2.6
  • x-python3-version 3.2
• P debian-control-has-unusual-field-spacing
  • line 27
• X debian-watch-does-not-check-gpg-signature

ctdconverter

• W manpage-has-errors-from-man
  • usr/share/man/man1/CTDConverter.1.gz 75: warning [p 2, 4.2i]: can't break line

• W ancient-python-version-field
  • x-python-version 2.6
  • x-python3-version 3.2
• X debian-watch-does-not-check-gpg-signature
• X upstream-metadata-file-is-missing
• I vcs-field-not-canonical
  • https://salsa.debian.org/med-team/ctdopts.git https://salsa.debian.org/med-team/ctdopts

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 186)
  • debian/changelog (line 187)
  • debian/changelog (line 228)
  • debian/changelog (line 252)
  • debian/changelog (line 258)
  • debian/changelog (line 266)
  • debian/changelog (line 272)
  • debian/changelog (line 280)
  • debian/changelog (line 282)
  • debian/changelog (line 302)
  • debian/changelog (line 304)
  • debian/changelog (line 316)
  • debian/changelog (line 320)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
• I testsuite-autopkgtest-missing

ctn (3.2.0~dfsg-6+b1; main)

• X binary-file-built-without-LFS-support
  • usr/bin/archive_agent
  • usr/bin/archive_cleaner
  • usr/bin/archive_server
  • usr/bin/clone_study
  • usr/bin/commit_agent
  • usr/bin/create_greyscale_module
  • usr/bin/create_print_entry
  • usr/bin/ctndisp
  • usr/bin/ctnnetwork
  • usr/bin/dcm_add_fragments
  • usr/bin/dcm_create_object
  • usr/bin/dcm_ctnto10
  • usr/bin/dcm_diff
  • usr/bin/dcm_dump_compressed
  • usr/bin/dcm_dump_element
  • usr/bin/dcm_dump_file
  • usr/bin/dcm_make_object
  • usr/bin/dcm_map_to_8
  • usr/bin/dcm_mask_image
  • usr/bin/dcm_modify_elements
  • usr/bin/dcm_modify_object
  • usr/bin/dcm_print_dictionary
  • usr/bin/dcm_resize
  • usr/bin/dcm_rm_element
  • usr/bin/dcm_rm_group
  • usr/bin/dcm_snoop
  • usr/bin/dcm_strip_odd_groups
  • usr/bin/dcm_template
  • usr/bin/dcm_to_html
  • usr/bin/dcm_to_text
  • usr/bin/dcm_verify
  • usr/bin/dcm_vr_patterns
  • usr/bin/dcm_x_disp
  • usr/bin/dicom_echo
  • usr/bin/dump_commit_requests
  • usr/bin/enq_ctndisp
  • usr/bin/enq_ctnnetwork
  • usr/bin/ex1_initiator
  • usr/bin/ex2_initiator
  • usr/bin/ex3_acceptor
  • usr/bin/ex3_initiator
  • usr/bin/ex4_acceptor
  • usr/bin/ex4_initiator
  • usr/bin/fillImageDB
  • usr/bin/fillRSA
  • usr/bin/fillRSAImpInterp
  • usr/bin/fis_server
  • usr/bin/gqinitq
  • usr/bin/gqkillq
  • usr/bin/icon_append_file
  • usr/bin/icon_append_index
  • usr/bin/icon_dump_file
  • usr/bin/icon_dump_index
  • usr/bin/image_server
  • usr/bin/kill_ctndisp
  • usr/bin/kill_ctnnetwork
  • usr/bin/load_control
  • usr/bin/mwlQuery
  • usr/bin/pq_ctndisp
  • usr/bin/pq_ctnnetwork
  • usr/bin/print_client
  • usr/bin/print_mgr
  • usr/bin/print_server
  • usr/bin/print_server_display
  • usr/bin/ris_gateway
  • usr/bin/send_image
  • usr/bin/send_results
  • usr/bin/send_study
  • usr/bin/simple_pacs
  • usr/bin/simple_storage
  • usr/bin/snp_to_files
  • usr/bin/storage_classes
  • usr/bin/storage_commit
• I spelling-error-in-binary
  • usr/bin/archive_agent Unexepected Unexpected
  • usr/bin/archive_agent ment meant
  • usr/bin/archive_agent tranport transport
  • usr/bin/archive_agent uniqe unique
  • usr/bin/archive_cleaner Unexepected Unexpected
  • usr/bin/archive_cleaner ment meant
  • usr/bin/archive_cleaner tranport transport
  • usr/bin/archive_cleaner uniqe unique
  • usr/bin/archive_server Unexepected Unexpected
  • usr/bin/archive_server ment meant
  • usr/bin/archive_server tranport transport
  • usr/bin/archive_server uniqe unique
  • usr/bin/clone_study uniqe unique
  • usr/bin/commit_agent Unexepected Unexpected
  • usr/bin/commit_agent ment meant
  • usr/bin/commit_agent tranport transport
  • usr/bin/commit_agent uniqe unique
  • usr/bin/create_greyscale_module ment meant
  • usr/bin/create_print_entry Unexepected Unexpected
  • usr/bin/create_print_entry ment meant
  • usr/bin/create_print_entry tranport transport
  • usr/bin/create_print_entry uniqe unique
  • usr/bin/ctndisp ment meant
  • usr/bin/dcm_add_fragments ment meant
  • usr/bin/dcm_create_object ment meant
  • usr/bin/dcm_ctnto10 ment meant
  • usr/bin/dcm_diff ment meant
  • usr/bin/dcm_dump_compressed ment meant
  • usr/bin/dcm_dump_element ment meant
  • usr/bin/dcm_dump_file ment meant
  • usr/bin/dcm_make_object ment meant
  • usr/bin/dcm_map_to_8 ment meant
  • usr/bin/dcm_mask_image ment meant
  • usr/bin/dcm_modify_elements ment meant
  • usr/bin/dcm_modify_object decription description
  • usr/bin/dcm_modify_object ment meant
  • usr/bin/dcm_print_dictionary uniqe unique
  • usr/bin/dcm_resize ment meant
  • usr/bin/dcm_rm_element ment meant
  • usr/bin/dcm_rm_group ment meant
  • usr/bin/dcm_snoop ment meant
  • usr/bin/dcm_snoop tranport transport
  • usr/bin/dcm_snoop uniqe unique
  • usr/bin/dcm_strip_odd_groups ment meant
  • usr/bin/dcm_template ment meant
  • usr/bin/dcm_to_html ment meant
  • usr/bin/dcm_to_text ment meant
  • usr/bin/dcm_verify ment meant
  • usr/bin/dcm_vr_patterns ment meant
  • usr/bin/dcm_x_disp ment meant
  • usr/bin/dicom_echo Unexepected Unexpected
  • usr/bin/dicom_echo ment meant
  • usr/bin/dicom_echo pres press
  • usr/bin/dicom_echo tranport transport
  • usr/bin/dicom_echo uniqe unique
  • usr/bin/ex1_initiator ment meant
  • usr/bin/ex1_initiator tranport transport
  • usr/bin/ex1_initiator uniqe unique
  • usr/bin/ex2_initiator ment meant
  • usr/bin/ex2_initiator tranport transport
  • usr/bin/ex2_initiator uniqe unique
  • usr/bin/ex3_acceptor ment meant
  • usr/bin/ex3_acceptor tranport transport
  • usr/bin/ex3_acceptor uniqe unique
  • usr/bin/ex3_initiator ment meant
  • usr/bin/ex3_initiator tranport transport
  • usr/bin/ex3_initiator uniqe unique
  • usr/bin/ex4_acceptor ment meant
  • usr/bin/ex4_acceptor tranport transport
  • usr/bin/ex4_acceptor uniqe unique
  • usr/bin/ex4_initiator ment meant
  • usr/bin/ex4_initiator tranport transport
  • usr/bin/ex4_initiator uniqe unique
  • usr/bin/fillImageDB ment meant
  • usr/bin/fillRSA uniqe unique
  • usr/bin/fis_server Unexepected Unexpected
  • usr/bin/fis_server ment meant
  • usr/bin/fis_server tranport transport
  • usr/bin/fis_server uniqe unique
  • usr/bin/icon_append_file ment meant
  • usr/bin/icon_append_index ment meant
  • usr/bin/image_server Unexepected Unexpected
  • usr/bin/image_server ment meant
  • usr/bin/image_server tranport transport
  • usr/bin/image_server uniqe unique
  • usr/bin/mwlQuery Unexepected Unexpected
  • usr/bin/mwlQuery ment meant
  • usr/bin/mwlQuery tranport transport
  • usr/bin/mwlQuery uniqe unique
  • usr/bin/print_client Sofware Software
  • usr/bin/print_client Unexepected Unexpected
  • usr/bin/print_client ment meant
  • usr/bin/print_client pres press
  • usr/bin/print_client tranport transport
  • usr/bin/print_client uniqe unique
  • usr/bin/print_mgr Sofware Software
  • usr/bin/print_mgr Unexepected Unexpected
  • usr/bin/print_mgr ment meant
  • usr/bin/print_mgr pres press
  • usr/bin/print_mgr tranport transport
  • usr/bin/print_mgr uniqe unique
  • usr/bin/print_server Sofware Software
  • usr/bin/print_server Unexepected Unexpected
  • usr/bin/print_server ment meant
  • usr/bin/print_server tranport transport
  • usr/bin/print_server uniqe unique
  • usr/bin/print_server_display Sofware Software
  • usr/bin/print_server_display ment meant
  • usr/bin/print_server_display successfull successful
  • usr/bin/ris_gateway Unexepected Unexpected
  • usr/bin/ris_gateway ment meant
  • usr/bin/ris_gateway tranport transport
  • usr/bin/ris_gateway uniqe unique
  • usr/bin/send_image Unexepected Unexpected
  • usr/bin/send_image ment meant
  • usr/bin/send_image sensitve sensitive
  • usr/bin/send_image tranport transport
  • usr/bin/send_image uniqe unique
  • usr/bin/send_results Unexepected Unexpected
  • usr/bin/send_results ment meant
  • usr/bin/send_results tranport transport
  • usr/bin/send_results uniqe unique
  • usr/bin/send_study Unexepected Unexpected
  • usr/bin/send_study ment meant
  • usr/bin/send_study tranport transport
  • usr/bin/send_study uniqe unique
  • usr/bin/simple_pacs Unexepected Unexpected
  • usr/bin/simple_pacs ment meant
  • usr/bin/simple_pacs tranport transport
  • usr/bin/simple_pacs uniqe unique
  • usr/bin/simple_storage Unexepected Unexpected
  • usr/bin/simple_storage ment meant
  • usr/bin/simple_storage tranport transport
  • usr/bin/simple_storage uniqe unique
  • usr/bin/storage_classes tranport transport
  • usr/bin/storage_classes uniqe unique
  • usr/bin/storage_commit Unexepected Unexpected
  • usr/bin/storage_commit ment meant
  • usr/bin/storage_commit tranport transport
  • usr/bin/storage_commit uniqe unique

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://ctsim.org/download.html
• P file-contains-trailing-whitespace
  • debian/changelog (line 167)
  • debian/changelog (line 179)
  • debian/changelog (line 210)
  • debian/changelog (line 243)
  • debian/changelog (line 342)
  • debian/changelog (line 418)
  • debian/changelog (line 424)
  • debian/changelog (line 483)
  • debian/changelog (line 494)
  • debian/changelog (line 512)
  • debian/changelog (line 523)
  • debian/changelog (line 545)
  • debian/changelog (line 565)
  • debian/changelog (line 622)
  • debian/changelog (line 638)
  • debian/control (line 41)
  • debian/control (line 44)
  • debian/control (line 56)
• P package-uses-old-debhelper-compat-version
  • 10
• X upstream-metadata-file-is-missing

ctsim

• X binary-file-built-without-LFS-support
  • usr/bin/ctsim
  • usr/bin/ctsimtext

ctsim-doc

• W privacy-breach-generic
  • usr/share/doc/ctsim-doc/examples/simulate.html [<link rel="stylesheet" href="http://www.ctsim.org/main.css" type="text/css">] (http://www.ctsim.org/main.css)

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

cufflinks (2.2.1+dfsg.1-3+b1; non-free)

• X binary-file-built-without-LFS-support
  • usr/bin/compress_gtf
  • usr/bin/cuffcompare
  • usr/bin/cuffdiff
  • usr/bin/cufflinks
  • usr/bin/cuffnorm
  • usr/bin/cuffquant
  • usr/bin/gffread
  • usr/bin/gtf_to_sam
• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I spelling-error-in-binary
  • usr/bin/cuffdiff constrasts contrasts
• I spelling-error-in-manpage
  • usr/share/man/man1/cuffdiff.1.gz constrasts contrasts

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/rules (line 39)
• P package-uses-old-debhelper-compat-version
  • 10

cwltool

• O package-contains-documentation-outside-usr-share-doc
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.0/README.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.0/concepts.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.0/contrib.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.0/intro.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.0/invocation.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.0/salad/schema_salad/metaschema/import_include.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.0/salad/schema_salad/metaschema/salad.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.0/userguide-intro.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.1.0-dev1/README.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.1.0-dev1/concepts.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.1.0-dev1/contrib.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.1.0-dev1/intro.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.1.0-dev1/invocation.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/import_include.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.1.0-dev1/salad/schema_salad/metaschema/salad.md
  • usr/lib/python3/dist-packages/cwltool/schemas/v1.1.0-dev1/userguide-intro.md

• X debian-watch-does-not-check-gpg-signature
• P file-contains-trailing-whitespace
  • debian/changelog (line 222)
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

cycle

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python)
• I possible-documentation-but-no-doc-base-registration

• X debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • htslib/

python-cyvcf2

• I spelling-error-in-binary
  • usr/lib/python2.7/dist-packages/cyvcf2/cyvcf2.i386-linux-gnu.so UKNOWN UNKNOWN
  • usr/lib/python2.7/dist-packages/cyvcf2/cyvcf2.i386-linux-gnu.so wether whether
  • usr/lib/python2.7/dist-packages/cyvcf2/cyvcf2.x86_64-linux-gnu.so UKNOWN UNKNOWN
  • usr/lib/python2.7/dist-packages/cyvcf2/cyvcf2.x86_64-linux-gnu.so wether whether

python3-cyvcf2

• X application-in-library-section
  • python usr/bin/cyvcf2 [amd64, i386]
• W binary-without-manpage
  • usr/bin/cyvcf2 [amd64, i386]
• X library-package-name-for-application
  • usr/bin/cyvcf2 [amd64, i386]
• I spelling-error-in-binary
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-37m-i386-linux-gnu.so UKNOWN UNKNOWN [amd64, i386]
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-37m-i386-linux-gnu.so wether whether [amd64, i386]
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-37m-x86_64-linux-gnu.so UKNOWN UNKNOWN
  • usr/lib/python3/dist-packages/cyvcf2/cyvcf2.cpython-37m-x86_64-linux-gnu.so wether whether

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

daligner

• X binary-file-built-without-LFS-support
  • usr/bin/HPC.daligner [amd64, i386]
  • usr/bin/LAcat [amd64, i386]
  • usr/bin/LAcheck [amd64, i386]
  • usr/bin/LAdump [amd64, i386]
  • usr/bin/LAindex [amd64, i386]
  • usr/bin/LAmerge [amd64, i386]
  • usr/bin/LAshow [amd64, i386]
  • usr/bin/LAsort [amd64, i386]
  • usr/bin/LAsplit [amd64, i386]
  • usr/bin/daligner [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/HPC.daligner occurences occurrences [amd64, i386]
  • usr/bin/HPC.daligner previos previous [amd64, i386]
  • usr/bin/LAcat occurences occurrences [amd64, i386]
  • usr/bin/LAcat previos previous [amd64, i386]
  • usr/bin/LAcheck occurences occurrences [amd64, i386]
  • usr/bin/LAcheck previos previous [amd64, i386]
  • usr/bin/LAdump occurences occurrences [amd64, i386]
  • usr/bin/LAdump previos previous [amd64, i386]
  • usr/bin/LAindex occurences occurrences [amd64, i386]
  • usr/bin/LAindex previos previous [amd64, i386]
  • usr/bin/LAmerge occurences occurrences [amd64, i386]
  • usr/bin/LAmerge previos previous [amd64, i386]
  • usr/bin/LAshow occurences occurrences [amd64, i386]
  • usr/bin/LAshow previos previous [amd64, i386]
  • usr/bin/LAsort occurences occurrences [amd64, i386]
  • usr/bin/LAsort previos previous [amd64, i386]
  • usr/bin/LAsplit occurences occurrences [amd64, i386]
  • usr/bin/LAsplit previos previous [amd64, i386]
  • usr/bin/daligner occurences occurrences [amd64, i386]
  • usr/bin/daligner previos previous [amd64, i386]
  • usr/bin/daligner supression suppression [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

dascrubber

• X binary-file-built-without-LFS-support
  • usr/bin/DAScover [amd64, i386]
  • usr/bin/DASedit [amd64, i386]
  • usr/bin/DASmap [amd64, i386]
  • usr/bin/DASpatch [amd64, i386]
  • usr/bin/DASqv [amd64, i386]
  • usr/bin/DASrealign [amd64, i386]
  • usr/bin/DAStrim [amd64, i386]
  • usr/bin/REPcover [amd64, i386]
  • usr/bin/REPqv [amd64, i386]
  • usr/bin/REPtrim [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/DAScover occurences occurrences [amd64, i386]
  • usr/bin/DAScover previos previous [amd64, i386]
  • usr/bin/DASedit occurences occurrences [amd64, i386]
  • usr/bin/DASedit previos previous [amd64, i386]
  • usr/bin/DASmap occurences occurrences [amd64, i386]
  • usr/bin/DASmap previos previous [amd64, i386]
  • usr/bin/DASpatch occurences occurrences [amd64, i386]
  • usr/bin/DASpatch previos previous [amd64, i386]
  • usr/bin/DASqv occurences occurrences [amd64, i386]
  • usr/bin/DASqv previos previous [amd64, i386]
  • usr/bin/DASrealign occurences occurrences [amd64, i386]
  • usr/bin/DASrealign previos previous [amd64, i386]
  • usr/bin/DAStrim occurences occurrences [amd64, i386]
  • usr/bin/DAStrim previos previous [amd64, i386]
  • usr/bin/REPcover occurences occurrences [amd64, i386]
  • usr/bin/REPcover previos previous [amd64, i386]
  • usr/bin/REPqv occurences occurrences [amd64, i386]
  • usr/bin/REPqv previos previous [amd64, i386]
  • usr/bin/REPtrim occurences occurrences [amd64, i386]
  • usr/bin/REPtrim previos previous [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I file-contains-fixme-placeholder
  • debian/rules:25 FIXME

dawg

• X binary-file-built-without-LFS-support
  • usr/bin/dawg [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/dawg Unreconized Unrecognized [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

dazzdb

• X binary-file-built-without-LFS-support
  • usr/bin/Catrack
  • usr/bin/DAM2fasta
  • usr/bin/DB2arrow
  • usr/bin/DB2fasta
  • usr/bin/DB2quiva
  • usr/bin/DBdump
  • usr/bin/DBdust
  • usr/bin/DBmv
  • usr/bin/DBrm
  • usr/bin/DBshow
  • usr/bin/DBsplit
  • usr/bin/DBstats
  • usr/bin/DBtrim
  • usr/bin/DBwipe
  • usr/bin/arrow2DB
  • usr/bin/dsimulator
  • usr/bin/fasta2DAM
  • usr/bin/fasta2DB
  • usr/bin/quiva2DB
• I spelling-error-in-binary
  • usr/bin/Catrack occurences occurrences
  • usr/bin/Catrack previos previous
  • usr/bin/DAM2fasta occurences occurrences
  • usr/bin/DAM2fasta previos previous
  • usr/bin/DB2arrow occurences occurrences
  • usr/bin/DB2arrow previos previous
  • usr/bin/DB2fasta occurences occurrences
  • usr/bin/DB2fasta previos previous
  • usr/bin/DB2quiva occurences occurrences
  • usr/bin/DB2quiva previos previous
  • usr/bin/DBdump occurences occurrences
  • usr/bin/DBdump previos previous
  • usr/bin/DBdust occurences occurrences
  • usr/bin/DBdust previos previous
  • usr/bin/DBmv occurences occurrences
  • usr/bin/DBmv previos previous
  • usr/bin/DBrm occurences occurrences
  • usr/bin/DBrm previos previous
  • usr/bin/DBshow occurences occurrences
  • usr/bin/DBshow previos previous
  • usr/bin/DBsplit occurences occurrences
  • usr/bin/DBsplit previos previous
  • usr/bin/DBstats occurences occurrences
  • usr/bin/DBstats previos previous
  • usr/bin/DBtrim occurences occurrences
  • usr/bin/DBtrim previos previous
  • usr/bin/DBwipe occurences occurrences
  • usr/bin/DBwipe previos previous
  • usr/bin/arrow2DB occurences occurrences
  • usr/bin/arrow2DB previos previous
  • usr/bin/dsimulator occurences occurrences
  • usr/bin/dsimulator previos previous
  • usr/bin/fasta2DAM occurences occurrences
  • usr/bin/fasta2DAM previos previous
  • usr/bin/fasta2DB occurences occurrences
  • usr/bin/fasta2DB previos previous
  • usr/bin/quiva2DB Coul Could
  • usr/bin/quiva2DB occurences occurrences
  • usr/bin/quiva2DB previos previous

• X debian-watch-does-not-check-gpg-signature
• P source-contains-empty-directory
  • dcm_qa/
  • dcm_qa_nih/
  • dcm_qa_uih/
• I testsuite-autopkgtest-missing

dcm2niix

• X binary-file-built-without-LFS-support
  • usr/bin/dcm2niibatch
  • usr/bin/dcm2niix
• I spelling-error-in-binary
  • usr/bin/dcm2niibatch ment meant
  • usr/bin/dcm2niix ment meant

• I debian-rules-contains-unnecessary-get-orig-source-target
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • ftp://dicom.offis.de/pub/dicom/offis/software/dcmtk/current/dcmtk-(.*)\.tar\.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 22)
  • debian/changelog (line 23)
  • debian/changelog (line 24)
  • debian/changelog (line 693)
  • debian/rules (line 10)
  • debian/rules (line 67)
  • debian/rules (line 68)
  • debian/rules (line 78)
• I out-of-date-standards-version
  • 4.1.5 (released 2018-07-04) (current is 4.3.0)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing
• I wildcard-matches-nothing-in-dep5-copyright
  • dcmsr/include/dcmtk/dcmsr/cmr/dsrdnflt.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/dsritcsr.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/dsritcsr.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/dsrprdcc.h (paragraph at line 399)
  • dcmsr/include/dcmtk/dcmsr/cmr/tid1409m.h (paragraph at line 399)
  • dcmsr/libcmr/dsrdnflt.cc (paragraph at line 399)
  • dcmsr/libcmr/dsritcsr.cc (paragraph at line 399)
  • dcmsr/libcmr/dsritcsr.cc (paragraph at line 399)
  • dcmsr/libcmr/dsrprdcc.cc (paragraph at line 399)
  • dcmsr/libcmr/tid1409m.cc (paragraph at line 399)
  • dcmsr/libcmr/tid300cc.cc (paragraph at line 399)

dcmtk

• X binary-file-built-without-LFS-support
  • usr/bin/dcm2pdf
  • usr/bin/dcm2pnm
  • usr/bin/dcmftest
  • usr/bin/dcmj2pnm
  • usr/bin/dcml2pnm
  • usr/bin/dcmmklut
  • usr/bin/dcmp2pgm
  • usr/bin/dcmprscp
  • usr/bin/dcmprscu
  • usr/bin/dcmpsprt
  • usr/bin/dcmpsrcv
  • usr/bin/dcmpssnd
  • usr/bin/dcmsign
  • usr/bin/dump2dcm
  • usr/bin/storescp
  • usr/bin/xml2dcm
• I hardening-no-fortify-functions
  • usr/bin/dcmftest
  • usr/bin/dump2dcm
• I spelling-error-in-binary
  • usr/bin/dcmcjpls threshhold threshold
  • usr/bin/dcmodify occurences occurrences
  • usr/bin/dcmprscu occured occurred
  • usr/bin/dcmpsmk additonal additional
  • usr/bin/dcmpsprt pres press
  • usr/bin/storescu pres press
• I spelling-error-in-manpage
  • usr/share/man/man1/dcmcjpeg.1.gz truely truly
  • usr/share/man/man1/dcmcjpls.1.gz threshhold threshold
  • usr/share/man/man1/dcmcjpls.1.gz threshhold threshold
  • usr/share/man/man1/dcmcjpls.1.gz threshhold threshold
  • usr/share/man/man1/dcmp2pgm.1.gz allows to allows one to
  • usr/share/man/man1/dcmprscp.1.gz allows to allows one to
  • usr/share/man/man1/dcmpsmk.1.gz allow to allow one to

dcmtk-doc

• X duplicate-files
  • usr/share/doc/dcmtk-doc/html/search/all_1b.js usr/share/doc/dcmtk-doc/html/search/functions_1a.js

libdcmtk14

• X binary-file-built-without-LFS-support
  • usr/lib/i386-linux-gnu/libdcmdata.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmimgle.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmnet.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmpstat.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmqrdb.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmwlm.so.14.3.6.4
  • usr/lib/i386-linux-gnu/liboflog.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libofstd.so.14.3.6.4
• O embedded-library
  • usr/lib/i386-linux-gnu/libijg12.so.14.3.6.4: libjpeg
  • usr/lib/i386-linux-gnu/libijg16.so.14.3.6.4: libjpeg
  • usr/lib/i386-linux-gnu/libijg8.so.14.3.6.4: libjpeg
  • usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4: libjpeg
  • usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4: libjpeg
  • usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4: libjpeg
• I hardening-no-fortify-functions
  • usr/lib/i386-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmtls.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4
• O no-symbols-control-file
  • usr/lib/i386-linux-gnu/libcmr.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmdata.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmfg.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmimage.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmimgle.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmiod.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmjpeg.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmjpls.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmnet.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmpmap.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmpstat.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmqrdb.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmrt.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmseg.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmsr.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmtls.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmtract.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libdcmwlm.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libi2d.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/i386-linux-gnu/liboflog.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libofstd.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libcmr.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmdata.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmdsig.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmfg.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmimage.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmiod.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmjpeg.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmjpls.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmpmap.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmpstat.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmqrdb.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmrt.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmseg.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmsr.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmtls.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmtract.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libdcmwlm.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libi2d.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/liboflog.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4
• O package-name-doesnt-match-sonames
  • libcmr14 libdcmdata14 libdcmdsig14 libdcmfg14 libdcmimage14 libdcmimgle14 libdcmiod14 libdcmjpeg14 libdcmjpls14 libdcmnet14 libdcmpmap14 libdcmpstat14 libdcmqrdb14 libdcmrt14 libdcmseg14 libdcmsr14 libdcmtls14 libdcmtract14 libdcmwlm14 libi2d14 libijg12-14 libijg16-14 libijg8-14 liboflog14 libofstd14
• X shlib-calls-exit
  • usr/lib/i386-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/i386-linux-gnu/libofstd.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg12.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg16.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libijg8.so.14.3.6.4
  • usr/lib/x86_64-linux-gnu/libofstd.so.14.3.6.4
• I spelling-error-in-binary
  • usr/lib/i386-linux-gnu/libdcmnet.so.14.3.6.4 pres press
  • usr/lib/x86_64-linux-gnu/libdcmimgle.so.14.3.6.4 AfE Safe
  • usr/lib/x86_64-linux-gnu/libdcmnet.so.14.3.6.4 pres press

• P file-contains-trailing-whitespace
  • debian/changelog (line 10)
  • debian/changelog (line 126)
  • debian/changelog (line 127)
  • debian/changelog (line 165)
  • debian/changelog (line 166)
  • debian/changelog (line 195)
  • debian/changelog (line 196)
  • debian/changelog (line 313)
  • debian/changelog (line 314)
  • debian/changelog (line 387)
  • debian/changelog (line 388)
  • debian/changelog (line 612)
  • debian/changelog (line 663)
  • debian/changelog (line 872)
  • debian/changelog (line 9)
  • debian/changelog (line 907)
  • debian/changelog (line 924)
  • debian/changelog (line 953)
  • debian/changelog (line 967)
  • debian/control (line 1761)
• P no-dep5-copyright
• I testsuite-autopkgtest-missing

med-config

• P maintainer-script-without-set-e
  • config
  • postinst
• I unused-debconf-template
  • shared/med-config/usermenus

med-epi

• O description-possibly-contains-homepage
  • http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf

med-tasks

• O description-possibly-contains-homepage
  • https://blends.debian.org/med/tasks/

• X debian-watch-does-not-check-gpg-signature
• P source-contains-prebuilt-binary
  • r9/training/realign

deepnano

• X dependency-on-python-version-marked-for-end-of-life
  • (Depends: python) [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I testsuite-autopkgtest-missing

delly

• I hardening-no-fortify-functions
  • usr/bin/delly [amd64, i386]
  • usr/bin/dpe [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://dialign.gobics.de/download/dialign-(.*)-linux\.i586\.tar\.gz
• P file-contains-trailing-whitespace
  • debian/changelog (line 148)
• P insecure-copyright-format-uri
  • http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/

dialign

• X binary-file-built-without-LFS-support
  • usr/bin/dialign2-2
• P copyright-refers-to-symlink-license
  • usr/share/common-licenses/LGPL

• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://dialign-tx.gobics.de/download
• X maybe-not-arch-all-binnmuable
  • dialign-tx -> dialign-tx-data
• P source-contains-empty-directory
  • bin/

dialign-tx

• X binary-file-built-without-LFS-support
  • usr/bin/dialign-tx [amd64, i386]
• W spelling-error-in-readme-debian
  • acces access [amd64, i386]

• X debian-watch-does-not-check-gpg-signature
• I out-of-date-standards-version
  • 4.2.1 (released 2018-08-25) (current is 4.3.0)
• I testsuite-autopkgtest-missing

diamond-aligner

• I spelling-error-in-binary
  • usr/lib/debian-med/bin/diamond characte character

• I debian-rules-contains-unnecessary-get-orig-source-target
• I debian-rules-parses-dpkg-parsechangelog
  • (line 10)
• X debian-watch-does-not-check-gpg-signature
• I debian-watch-uses-insecure-uri
  • http://www.dclunie.com/dicom3tools/workinprogress/
• P file-contains-trailing-whitespace
  • debian/changelog (line 3)
• I out-of-date-standards-version
  • 4.1.4 (released 2018-04-05) (current is 4.3.0)
• P package-uses-old-debhelper-compat-version
  • 9
• I testsuite-autopkgtest-missing
• X upstream-metadata-file-is-missing

dicom3tools

• I hardening-no-bindnow
  • usr/bin/andump [amd64, i386]
  • usr/bin/dcdirdmp [amd64, i386]
  • usr/bin/dcdump [amd64, i386]
  • usr/bin/dcentvfy [amd64, i386]
  • usr/bin/dcfile [amd64, i386]
  • usr/bin/dchist [amd64, i386]
  • usr/bin/dciodvfy [amd64, i386]
  • usr/bin/dckey [amd64, i386]
  • usr/bin/dcposn [amd64, i386]
  • usr/bin/dcsort [amd64, i386]
  • usr/bin/dcsrdump [amd64, i386]
  • usr/bin/dcstats [amd64, i386]
  • usr/bin/dctable [amd64, i386]
  • usr/bin/dctopgm8 [amd64, i386]
  • usr/bin/dctopgx [amd64, i386]
  • usr/bin/dctopnm [amd64, i386]
  • usr/bin/jpegdump [amd64, i386]
• I hardening-no-fortify-functions
  • usr/bin/andump [amd64, i386]
  • usr/bin/dcdirdmp [amd64, i386]
  • usr/bin/dcdump [amd64, i386]
  • usr/bin/dcentvfy [amd64, i386]
  • usr/bin/dcfile [amd64, i386]
  • usr/bin/dchist [amd64, i386]
  • usr/bin/dciodvfy [amd64, i386]
  • usr/bin/dckey [amd64, i386]
  • usr/bin/dcposn [amd64, i386]
  • usr/bin/dcsort [amd64, i386]
  • usr/bin/dcsrdump [amd64, i386]
  • usr/bin/dcstats [amd64, i386]
  • usr/bin/dctable [amd64, i386]
  • usr/bin/dctopgm8 [amd64, i386]
  • usr/bin/dctopgx [amd64, i386]
  • usr/bin/dctopnm [amd64, i386]
• I spelling-error-in-binary
  • usr/bin/andump Dependant Dependent [amd64, i386]
  • usr/bin/andump Unkown Unknown [amd64, i386]
  • usr/bin/dcdirdmp Dependant Dependent [amd64, i386]
  • usr/bin/dcdirdmp Unkown Unknown [amd64, i386]
  • usr/bin/dcdirdmp convertor converter [amd64, i386]
  • usr/bin/dcdump Dependant Dependent [amd64, i386]
  • usr/bin/dcdump Unkown Unknown [amd64, i386]
  • usr/bin/dcdump convertor converter [amd64, i386]
  • usr/bin/dcentvfy AMMENDMENT AMENDMENT [amd64, i386]
  • usr/bin/dcentvfy Dependant Dependent [amd64, i386]
  • usr/bin/dcentvfy Unkown Unknown [amd64, i386]
  • usr/bin/dcentvfy convertor converter [amd64, i386]
  • usr/bin/dcfile Dependant Dependent [amd64, i386]
  • usr/bin/dcfile Unkown Unknown [amd64, i386]
  • usr/bin/dchist Dependant Dependent [amd64, i386]
  • usr/bin/dchist Unkown Unknown [amd64, i386]
  • usr/bin/dchist convertor converter [amd64, i386]
  • usr/bin/dciodvfy AMMENDMENT AMENDMENT [amd64, i386]
  • usr/bin/dciodvfy Dependant Dependent [amd64, i386]
  • usr/bin/dciodvfy Unkown Unknown [amd64, i386]
  • usr/bin/dciodvfy convertor converter [amd64, i386]
  • usr/bin/dckey Dependant Dependent [amd64, i386]
  • usr/bin/dckey Unkown Unknown [amd64, i386]
  • usr/bin/dckey convertor converter [amd64, i386]
  • usr/bin/dcposn Dependant Dependent [amd64, i386]
  • usr/bin/dcposn Unkown Unknown [amd64, i386]
  • usr/bin/dcposn convertor converter [amd64, i386]
  • usr/bin/dcsort Dependant Dependent [amd64, i386]
  • usr/bin/dcsort Unkown Unknown [amd64, i386]
  • usr/bin/dcsort convertor converter [amd64, i386]
  • usr/bin/dcsrdump Dependant Dependent [amd64, i386]
  • usr/bin/dcsrdump Unkown Unknown [amd64, i386]
  • usr/bin/dcsrdump convertor converter [amd64, i386]
  • usr/bin/dcstats Dependant Dependent [amd64, i386]
  • usr/bin/dcstats Unkown Unknown [amd64, i386]
  • usr/bin/dcstats convertor converter [amd64, i386]
  • usr/bin/dctable Dependant Dependent [amd64, i386]
  • usr/bin/dctable Unkown Unknown [amd64, i386]
  • usr/bin/dctable convertor converter [amd64, i386]
  • usr/bin/dctopgm8 Dependant Dependent [amd64, i386]
  • usr/bin/dctopgm8 Unkown Unknown [amd64, i386]
  • usr/bin/dctopgm8 convertor converter [amd64, i386]
  • usr/bin/dctopgx Dependant Dependent [amd64, i386]
  • usr/bin/dctopgx Unkown Unknown [amd64, i386]
  • usr/bin/dctopgx convertor converter [amd64, i386]
  • usr/bin/dctopnm Dependant Dependent [amd64, i386]
  • usr/bin/dctopnm Unkown Unknown [amd64, i386]
  • usr/bin/dctopnm convertor converter [amd64, i386]
• I spelling-error-in-manpage
  • usr/share/man/man1/dcsrdump.1.gz Preceed Precede [amd64, i386]
  • usr/share/man/man1/dctopgm8.1.gz supresses suppresses [amd64, i386]
  • usr/share/man/man1/dctopgm8.1.gz supresses suppresses [amd64, i386]